JDK 11 compliance

Reviewed-on: #6

.classpath

@@ -1,36 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<classpath>
-	<classpathentry kind="src" output="target/classes" path="src/main/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/classes" path="src/main/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="src" output="target/test-classes" path="src/test/java">
-		<attributes>
-			<attribute name="optional" value="true"/>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry excluding="**" kind="src" output="target/test-classes" path="src/test/resources">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
-		<attributes>
-			<attribute name="maven.pomderived" value="true"/>
-		</attributes>
-	</classpathentry>
-	<classpathentry kind="output" path="target/classes"/>
-</classpath>

.settings/.gitignore

@@ -0,0 +1 @@
+/org.eclipse.jdt.core.prefs

.settings/org.eclipse.jdt.core.prefs

@@ -1,5 +0,0 @@
-eclipse.preferences.version=1
-org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
-org.eclipse.jdt.core.compiler.compliance=1.8
-org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
-org.eclipse.jdt.core.compiler.source=1.8

CHANGELOG.md

@@ -0,0 +1,20 @@
+This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
+
+# Changelog for org.gcube.data.transfer.sis-geotk-plugin
+
+## [v1.3.1] 2021-03-25
+Fixes [#20760](https://support.d4science.org/issues/20760) https endpoints
+
+
+## [v1.3.0] 2021-03-25
+Use of EPSG Dataset
+Proxy support
+
+## [v1.2.0] 2020-09-07
+Upgrade to apache-sis 1.0
+
+## [v1.1.3] 2020-09-07
+
+### Fixes
+
+- Integration with gcube distribution (https://support.d4science.org/issues/19612)

FUNDING.md

@@ -0,0 +1,26 @@
+# Acknowledgments
+
+The projects leading to this software have received funding from a series of European Union programmes including:
+
+- the Sixth Framework Programme for Research and Technological Development
+    - [DILIGENT](https://cordis.europa.eu/project/id/004260) (grant no. 004260).
+- the Seventh Framework Programme for research, technological development and demonstration 
+    - [D4Science](https://cordis.europa.eu/project/id/212488) (grant no. 212488);
+    - [D4Science-II](https://cordis.europa.eu/project/id/239019) (grant no.239019);
+    - [ENVRI](https://cordis.europa.eu/project/id/283465) (grant no. 283465);
+    - [iMarine](https://cordis.europa.eu/project/id/283644) (grant no. 283644);
+    - [EUBrazilOpenBio](https://cordis.europa.eu/project/id/288754) (grant no. 288754).
+- the H2020 research and innovation programme 
+    - [SoBigData](https://cordis.europa.eu/project/id/654024) (grant no. 654024);
+    - [PARTHENOS](https://cordis.europa.eu/project/id/654119) (grant no. 654119);
+    - [EGI-Engage](https://cordis.europa.eu/project/id/654142) (grant no. 654142);
+    - [ENVRI PLUS](https://cordis.europa.eu/project/id/654182) (grant no. 654182);
+    - [BlueBRIDGE](https://cordis.europa.eu/project/id/675680) (grant no. 675680);
+    - [PerformFISH](https://cordis.europa.eu/project/id/727610) (grant no. 727610);
+    - [AGINFRA PLUS](https://cordis.europa.eu/project/id/731001) (grant no. 731001);
+    - [DESIRA](https://cordis.europa.eu/project/id/818194) (grant no. 818194);
+    - [ARIADNEplus](https://cordis.europa.eu/project/id/823914) (grant no. 823914);
+    - [RISIS 2](https://cordis.europa.eu/project/id/824091) (grant no. 824091);
+    - [EOSC-Pillar](https://cordis.europa.eu/project/id/857650) (grant no. 857650);
+    - [Blue Cloud](https://cordis.europa.eu/project/id/862409) (grant no. 862409);
+    - [SoBigData-PlusPlus](https://cordis.europa.eu/project/id/871042) (grant no. 871042);

LICENSE.md

@@ -0,0 +1,312 @@
+# European Union Public Licence V. 1.1
+
+
+EUPL © the European Community 2007
+
+
+This European Union Public Licence (the “EUPL”) applies to the Work or Software
+(as defined below) which is provided under the terms of this Licence. Any use of
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+
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+subject to the jurisdiction of the Court of Justice of the European Communities,
+as laid down in article 238 of the Treaty establishing the European Community.
+
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+
+
+## 15. Applicable Law
+
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+
+This licence shall be governed by the Belgian law if:
+
+- a litigation arises between the European Commission, as a Licensor, and any
+- Licensee; the Licensor, other than the European Commission, has no residence
+- or registered office inside a European Union country.
+
+
+
+## Appendix
+
+
+
+“Compatible Licences” according to article 5 EUPL are:
+
+
+- GNU General Public License (GNU GPL) v. 2
+
+- Open Software License (OSL) v. 2.1, v. 3.0
+
+- Common Public License v. 1.0
+
+- Eclipse Public License v. 1.0
+
+- Cecill v. 2.0
+

README.md

@@ -0,0 +1,51 @@
+Data Transfer - Plugin Framework
+--------------------------------------------------
+ 
+Data Transfer Plugin Framework is one of the subsystems forming the gCube Data Transfer Facilities. It aims to provide gCube Applications a common layer for efficient and transparent data transfer towards gCube SmartGear nodes. It's designed as a client service architecture exploiting plugin design pattern.
+ 
+## Built with
+* [OpenJDK](https://openjdk.java.net/) - The JDK used
+* [JAX-RS](https://github.com/eclipse-ee4j/jaxrs-api) - Java™ API for RESTful Web Services
+* [Jersey](https://jersey.github.io/) - JAX-RS runtime
+* [Maven](https://maven.apache.org/) - Dependency Management
+
+## Documentation
+
+Documentation can be found [here](https://gcube.wiki.gcube-system.org/gcube/Data_Transfer_2).
+
+## Change log
+
+See [CHANGELOG.md](CHANGELOG.md).
+
+## License
+
+This project is licensed under the EUPL V.1.1 License - see the [LICENSE.md](LICENSE.md) file for details.
+ 
+## About the gCube Framework
+This software is part of the [gCubeFramework](https://www.gcube-system.org/ "gCubeFramework"): an
+open-source software toolkit used for building and operating Hybrid Data
+Infrastructures enabling the dynamic deployment of Virtual Research Environments
+by favouring the realisation of reuse oriented policies.
+ 
+The projects leading to this software have received funding from a series of European Union programmes including:
+
+- the Sixth Framework Programme for Research and Technological Development
+    - DILIGENT (grant no. 004260).
+- the Seventh Framework Programme for research, technological development and demonstration 
+    - D4Science (grant no. 212488);
+    - D4Science-II (grant no.239019);
+    - ENVRI (grant no. 283465);
+    - iMarine(grant no. 283644);
+    - EUBrazilOpenBio (grant no. 288754).
+- the H2020 research and innovation programme 
+    - SoBigData (grant no. 654024);
+    - PARTHENOS (grant no. 654119);
+    - EGIEngage (grant no. 654142);
+    - ENVRIplus (grant no. 654182);
+    - BlueBRIDGE (grant no. 675680);
+    - PerformFish (grant no. 727610);
+    - AGINFRAplus (grant no. 731001);
+    - DESIRA (grant no. 818194);
+    - ARIADNEplus (grant no. 823914);
+    - RISIS2 (grant no. 824091);
+

pom.xml

@@ -1,4 +1,5 @@
-<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+<project xmlns="http://maven.apache.org/POM/4.0.0"
+	xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
 	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
 	<modelVersion>4.0.0</modelVersion>
 	<parent>
@@ -8,30 +9,45 @@
 	</parent>
 	<groupId>org.gcube.data.transfer</groupId>
 	<artifactId>sis-geotk-plugin</artifactId>
-	<version>1.1.2</version>
+	<version>1.3.1</version>
 	<name>Sis/GeoToolkit plugin</name>
 	<description>Apache Sis/Geotk plugin for data-transfer-service</description>
 
 	<properties>
-		<distroDirectory>${project.basedir}/distro</distroDirectory>
-		<svnBaseUrl>http://svn.research-infrastructures.eu/d4science/gcube/trunk/data-transfer/${project.artifactId}</svnBaseUrl>
-		<sis.version>0.7</sis.version>
+		<sis.version>1.0</sis.version>
 		<sis.utils.modules>${sis.version}</sis.utils.modules>
+		<gitBaseUrl>https://code-repo.d4science.org/gCubeSystem</gitBaseUrl>
+		<netcdfJavaVersion>5.3.3</netcdfJavaVersion>
 	</properties>
 
 	<scm>
-    		<connection>scm:git:https://code-repo.d4science.org/gCubeSystem/${project.artifactId}.git</connection>
-    		<developerConnection>scm:git:https://code-repo.d4science.org/gCubeSystem/${project.artifactId}.git</developerConnection>
-    		<url>https://code-repo.d4science.org/gCubeSystem/${project.artifactId}</url>
+		<connection>scm:git:${gitBaseUrl}/${project.artifactId}.git</connection>
+		<developerConnection>scm:git:${gitBaseUrl}/${project.artifactId}.git</developerConnection>
+		<url>${gitBaseUrl}/${project.artifactId}.git</url>
 	</scm>
 
 
 	<dependencyManagement>
 		<dependencies>
 			<dependency>
-				<groupId>org.gcube.data.transfer</groupId>
-				<artifactId>data-transfer-bom</artifactId>
-				<version>LATEST</version>
+				<groupId>org.gcube.distribution</groupId>
+				<artifactId>gcube-smartgears-bom</artifactId>
+				<version>2.2.0</version>
+				<type>pom</type>
+				<scope>import</scope>
+			</dependency>
+			<dependency>
+				<groupId>org.gcube.distribution</groupId>
+				<artifactId>gcube-bom</artifactId>
+				<version>2.1.0</version>
+				<type>pom</type>
+				<scope>import</scope>
+			</dependency>
+			<!-- https://mvnrepository.com/artifact/org.apache.sis/storage -->
+			<dependency>
+				<groupId>org.apache.sis</groupId>
+				<artifactId>storage</artifactId>
+				<version>1.0</version>
 				<type>pom</type>
 				<scope>import</scope>
 			</dependency>
@@ -42,13 +58,12 @@
 		<dependency>
 			<groupId>org.gcube.data.transfer</groupId>
 			<artifactId>data-transfer-plugin-framework</artifactId>
+			<version>[1.0.2,2.0.0)</version>
 		</dependency>
 
 		<dependency>
 			<groupId>org.slf4j</groupId>
 			<artifactId>slf4j-api</artifactId>
-			<version>1.7.5</version>
-			<scope>provided</scope>
 		</dependency>
 
 		<dependency>
@@ -60,16 +75,12 @@
 			<artifactId>common-encryption</artifactId>
 		</dependency>
 
-		<!-- <dependency> -->
-		<!-- <groupId>org.gcube.spatial.data</groupId> -->
-		<!-- <artifactId>geonetwork</artifactId> -->
-		<!-- <version>[3.0.0-SNAPSHOT,4.0.0-SNAPSHOT)</version> -->
-		<!-- </dependency> -->
 
 		<dependency>
 			<groupId>org.gcube.spatial.data</groupId>
 			<artifactId>sdi-library</artifactId>
-			<version>[1.0.0-SNAPSHOT,2.0.0-SNAPSHOT)</version>
+			<version>[1.0.0,1.0.2]</version>
+<!-- 			<version>[1.0.0,2.0)</version> -->
 		</dependency>
 
 		<!-- SMARTGEARS -->
@@ -96,13 +107,55 @@
 			<artifactId>sis-netcdf</artifactId>
 			<version>${sis.utils.modules}</version>
 		</dependency>
+		<dependency>
+			<groupId>org.apache.sis.storage</groupId>
+			<artifactId>sis-earth-observation</artifactId>
+			<version>${sis.utils.modules}</version>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.sis.storage</groupId>
+			<artifactId>sis-geotiff</artifactId>
+			<version>${sis.utils.modules}</version>
+		</dependency>
+
+
+		<!-- SIS EXTERNALS -->
+		<!-- https://mvnrepository.com/artifact/com.esri.geometry/esri-geometry-api -->
+		<!-- <dependency> -->
+		<!-- <groupId>com.esri.geometry</groupId> -->
+		<!-- <artifactId>esri-geometry-api</artifactId> -->
+		<!-- </dependency> -->
+
+		<!-- https://mvnrepository.com/artifact/edu.ucar/cdm -->
+		<dependency>
+			<groupId>edu.ucar</groupId>
+			<artifactId>cdm</artifactId>
+			<scope>compile</scope>
+		</dependency>
+
+
+		<!-- EPSG DATASET -->
+
+		<dependency>
+			<groupId>org.apache.sis.non-free</groupId>
+			<artifactId>sis-embedded-data</artifactId>
+			<version>${sis.version}</version>
+			<scope>runtime</scope>
+		</dependency>
+		<dependency>
+			<groupId>org.apache.derby</groupId>
+			<artifactId>derby</artifactId>
+			<scope>runtime</scope>
+		</dependency>
+
+
 
 		<!-- TEST -->
 		<dependency>
 			<groupId>org.slf4j</groupId>
 			<artifactId>slf4j-log4j12</artifactId>
 			<version>1.6.4</version>
-			<scope>provided</scope>
+			<scope>test</scope>
 		</dependency>
 		<dependency>
 			<groupId>junit</groupId>
@@ -112,15 +165,38 @@
 		<dependency>
 			<groupId>org.gcube.data.transfer</groupId>
 			<artifactId>data-transfer-library</artifactId>
-			<version>[1.2.0-SNAPSHOT,2.0.0-SNAPSHOT)</version>
+			<version>[1.2.0,2.0.0-SNAPSHOT)</version>
 			<scope>test</scope>
 		</dependency>
 
+		<dependency>
+			<groupId>javax.xml.bind</groupId>
+			<artifactId>jaxb-api</artifactId>
+		</dependency>
+
+		<dependency>
+			<groupId>org.opengis</groupId>
+			<artifactId>geoapi-conformance</artifactId>
+			<scope>test</scope>
+		</dependency>
+
+
 	</dependencies>
 
+	<repositories>
+		<repository>
+			<id>unidata-all</id>
+			<name>Unidata All</name>
+
+			<url>https://nexus.d4science.org/nexus/content/repositories/unidata/</url>
+		</repository>
+	</repositories>
+
+
+
 	<build>
 		<plugins>
-			
+
 			<plugin>
 				<groupId>org.apache.maven.plugins</groupId>
 				<artifactId>maven-assembly-plugin</artifactId>

src/.gitignore

@@ -0,0 +1 @@
+/.DS_Store

src/main/java/org/gcube/data/transfer/plugins/thredds/ISOMetadataMarshalling.java

@@ -0,0 +1,74 @@
+package org.gcube.data.transfer.plugins.thredds;
+
+import static java.util.Collections.singletonMap;
+
+import java.io.File;
+import java.io.FileWriter;
+import java.io.IOException;
+
+import javax.xml.bind.JAXBException;
+import javax.xml.transform.stream.StreamResult;
+
+import org.apache.sis.xml.MarshallerPool;
+import org.apache.sis.xml.XML;
+import org.opengis.metadata.Metadata;
+
+import lombok.Synchronized;
+import lombok.extern.slf4j.Slf4j;
+
+@Slf4j
+public class ISOMetadataMarshalling {
+
+	
+	private static MarshallerPool pool=null;
+	
+//	static {
+//		
+//		File temp=new File(System.getProperty("java.io.tmpdir")+"/EPSG");
+//		temp.mkdirs();
+//		
+//		EmbeddedConnectionPoolDataSource ds = new EmbeddedConnectionPoolDataSource();
+//		ds.setConnectionAttributes("create=true");
+//		
+//		ds.setDatabaseName(temp.getAbsolutePath()+"/SpatialMetadata");
+//		
+////		ds.setDataSourceName(arg0);
+////		  ds.setServerName("someHost");
+////		  ds.setPortNumber("1527");
+////		  ds.setDatabaseName("someDB");
+//		
+//		Configuration.current().setDatabase(new Supplier<DataSource>() {
+//			@Override
+//			public DataSource get() {
+//				return ds;
+//			}
+//		});
+//		
+//		
+//	}
+	
+	
+	
+	@Synchronized
+	private static MarshallerPool getPool() throws JAXBException {
+		if(pool==null)
+			pool=new MarshallerPool(
+					singletonMap(XML.METADATA_VERSION,"2007"));
+		
+		return pool;
+	}
+	
+	public static final File asXML(Metadata meta) throws JAXBException, IOException {
+		File tmp=File.createTempFile("tmp_meta_", ".xml");
+		try (FileWriter fw=new FileWriter(tmp)){
+
+			getPool().acquireMarshaller().marshal(meta,new StreamResult(fw));
+			
+//			XML.marshal(meta, new StreamResult(fw), singletonMap(XML.METADATA_VERSION,"2007"));
+		}
+		return tmp;		
+	}
+	
+	
+	
+}

src/main/java/org/gcube/data/transfer/plugins/thredds/ThreddsInstanceManager.java

@@ -71,7 +71,18 @@ public class ThreddsInstanceManager {
 	protected ThreddsInstanceManager(DataTransferContext context) {
 		log.warn("Instance Creation. Should happen only once. Loading information from context..");
 		this.ctx=context;
-		currentHostname=ctx.getCtx().container().configuration().hostname();
+		try {
+			log.info("Loading proxy configuration..");
+			currentHostname=ctx.getCtx().configuration().proxyAddress().hostname();
+			if(currentHostname==null||currentHostname.isEmpty()) throw new Exception("Proxy is : "+currentHostname);
+		}catch(Exception e) {
+			log.info("Unable to get proxy..",e);
+			currentHostname=ctx.getCtx().container().configuration().hostname();
+		}
+		log.info("Hostname to be used is "+currentHostname);
+		
+		
+		
 		currentGHNId=ctx.getCtx().container().id();
 		String tomcatSecurityPath=System.getenv("WEB_CONTAINER_HOME")+"/conf/tomcat-users.xml";
 
@@ -121,7 +132,7 @@ public class ThreddsInstanceManager {
 			info.setHostname(currentHostname);
 			info.setGhnId(currentGHNId);
 			info.setLocalBasePath(threddsPersistenceLocation);
-			info.setInstanceBaseUrl("http://"+info.getHostname()+"/thredds");
+			info.setInstanceBaseUrl("https://"+info.getHostname()+"/thredds");
 
 
 			String mainCatalogPath=threddsContentRoot+"/catalog.xml";

src/main/java/org/gcube/data/transfer/plugins/thredds/sis/SISPluginFactory.java

@@ -20,7 +20,7 @@ public class SISPluginFactory extends AbstractPluginFactory<SisPlugin> {
 
 
 
-	static final String PLUGIN_ID="SIS/GEOTK";
+	public static final String PLUGIN_ID="SIS/GEOTK";
 
 	public static final String SOURCE_PARAMETER="SOURCE_FILE";
 	public static final String GEONETWORK_CATEGORY="GEONETWORK_CATEGORY";

src/main/java/org/gcube/data/transfer/plugins/thredds/sis/SisPlugin.java

@@ -16,6 +16,7 @@ import org.gcube.data.transfer.model.plugins.thredds.ThreddsCatalog;
 import org.gcube.data.transfer.plugin.AbstractPlugin;
 import org.gcube.data.transfer.plugin.fails.PluginCleanupException;
 import org.gcube.data.transfer.plugin.fails.PluginExecutionException;
+import org.gcube.data.transfer.plugins.thredds.ISOMetadataMarshalling;
 import org.gcube.data.transfer.plugins.thredds.ThreddsInstanceManager;
 import org.gcube.spatial.data.sdi.model.metadata.MetadataPublishOptions;
 import org.gcube.spatial.data.sdi.model.metadata.MetadataReport;
@@ -69,9 +70,7 @@ public class SisPlugin extends AbstractPlugin {
 			log.debug("Extracting meta from {} ",dataStore.getAbsolutePath());
 			Metadata meta=getMetaFromFile(dataStore);
 			
-			tmp=File.createTempFile("tmp_meta_", ".xml");
-
-			XML.marshal(meta,tmp);
+			tmp=ISOMetadataMarshalling.asXML(meta);
 			
 			org.gcube.spatial.data.sdi.interfaces.Metadata metadataInterface=SDIAbstractPlugin.metadata().build();
 			

src/test/java/org/gcube/data/transfer/plugins/sis/PublishTest.java

@@ -0,0 +1,80 @@
+package org.gcube.data.transfer.plugins.sis;
+
+import java.io.File;
+import java.io.FilenameFilter;
+import java.net.MalformedURLException;
+import java.net.URL;
+import java.nio.file.Paths;
+import java.util.Collections;
+import java.util.Set;
+
+import org.gcube.data.transfer.library.DataTransferClient;
+import org.gcube.data.transfer.library.TransferResult;
+import org.gcube.data.transfer.library.faults.DestinationNotSetException;
+import org.gcube.data.transfer.library.faults.FailedTransferException;
+import org.gcube.data.transfer.library.faults.InitializationException;
+import org.gcube.data.transfer.library.faults.InvalidDestinationException;
+import org.gcube.data.transfer.library.faults.InvalidSourceException;
+import org.gcube.data.transfer.library.faults.SourceNotSetException;
+import org.gcube.data.transfer.model.Destination;
+import org.gcube.data.transfer.model.DestinationClashPolicy;
+import org.gcube.data.transfer.model.PluginInvocation;
+import org.gcube.data.transfer.plugins.thredds.sis.SISPluginFactory;
+
+
+public class PublishTest {
+
+	public static void main(String[] args) throws MalformedURLException, Exception, InvalidSourceException, SourceNotSetException, FailedTransferException, InitializationException, InvalidDestinationException, DestinationNotSetException {
+
+		TokenSetter.set("/pred4s/preprod/preVRE");
+		
+		
+		
+		String hostname="";
+				// Not yet released sdi refactoring
+		// new URL(SDIAbstractPlugin.management().build().getConfiguration().getByEngine(Engine.TH_ENGINE).get(0).getBaseEndpoint()).getHost();
+		
+		DataTransferClient client=DataTransferClient.getInstanceByEndpoint("https://"+hostname);
+		
+		
+		File metadata=Paths.get("src/test/resources/toPublishMeta").toFile();
+//		for(File f:metadata.listFiles(new FilenameFilter() {			
+//			@Override
+//			public boolean accept(File dir, String name) {
+//				return name.endsWith(".xml");
+//			}
+//		})) {
+//			for(File f:new File[] {
+//					new File("/Users/FabioISTI/Downloads/NASA_Surface_Air_Temperature_1950_2100_rcp45.nc")
+//			}) {
+		
+			for(URL url:new URL[] {
+					new URL("https://thredds.d4science.org/thredds/fileServer/public/netcdf/ClimateChange/NASA_Precipitations_1950_2100_rcp45.nc")
+			}) {
+			
+			// if not present, generate with sis/geotk
+			Destination toSetDestination=new Destination();
+			toSetDestination.setCreateSubfolders(true);
+			toSetDestination.setDestinationFileName("another_dataset");
+			toSetDestination.setOnExistingFileName(DestinationClashPolicy.REWRITE);
+			toSetDestination.setOnExistingSubFolder(DestinationClashPolicy.APPEND);
+			toSetDestination.setPersistenceId("thredds");
+
+			//NB ITEM IS SUPPOSED TO HAVE REMOTE PATH 
+			String fileLocation="public/netcdf/test_"+System.currentTimeMillis();
+			toSetDestination.setSubFolder(fileLocation);
+			
+			PluginInvocation inv=new PluginInvocation(SISPluginFactory.PLUGIN_ID);
+			inv.setParameters(Collections.singletonMap(SISPluginFactory.VALIDATE_PARAMETER, "false"));
+			
+			System.out.println(
+//					client.localFile(f, toSetDestination, Collections.singleton(new PluginInvocation(SISPluginFactory.PLUGIN_ID))));
+					client.httpSource(url, toSetDestination, inv));
+					
+		}
+
+	}
+
+	
+	
+}

src/test/java/org/gcube/data/transfer/plugins/sis/TestGetMetadata.java

@@ -2,67 +2,144 @@ package org.gcube.data.transfer.plugins.sis;
 
 import java.io.File;
 import java.io.FileInputStream;
-import java.io.FileNotFoundException;
 import java.io.FileOutputStream;
 import java.io.IOException;
 import java.io.InputStream;
 import java.io.OutputStream;
-import java.net.MalformedURLException;
+import java.net.URL;
 import java.nio.file.Files;
 import java.nio.file.StandardCopyOption;
 import java.security.MessageDigest;
 import java.security.NoSuchAlgorithmException;
 
+import javax.xml.bind.JAXBException;
+
 import org.apache.sis.storage.DataStoreException;
 import org.apache.sis.storage.UnsupportedStorageException;
-import org.gcube.data.transfer.model.TransferTicket.Status;
+import org.gcube.data.transfer.plugins.thredds.ISOMetadataMarshalling;
 import org.gcube.data.transfer.plugins.thredds.sis.SisPlugin;
 
+import ucar.nc2.NetcdfFile;
+import ucar.nc2.dataset.NetcdfDataset;
+
 public class TestGetMetadata {
 
-	public static void main(String[] args) throws UnsupportedStorageException, DataStoreException, IOException, NoSuchAlgorithmException {
+	public static void main(String[] args) throws UnsupportedStorageException, DataStoreException, IOException, NoSuchAlgorithmException, JAXBException {
+		String[] toCheckFiles=new String[] {
+				
+				
+				// ********** HDF - NETCDF 4
+				"/Users/FabioISTI/Downloads/NASA_Surface_Air_Temperature_1950_2100_rcp45.nc",
+				
+//				"https://thredds.d4science.org/thredds/fileServer/public/netcdf/ClimateChange/NASA_Precipitations_1950_2100_rcp45.nc",
+//				"https://thredds.d4science.org/thredds/fileServer/public/netcdf/ClimateChange/NASA_Precipitations_1950_2100_rcp85.nc",
+//				"https://thredds.d4science.org/thredds/fileServer/public/netcdf/ClimateChange/NASA_Surface_Air_Temperature_1950_2100_rcp45.nc",
+//				"https://thredds.d4science.org/thredds/fileServer/public/netcdf/ClimateChange/NASA_Surface_Air_Temperature_1950_2100_rcp85.nc",
+//				"https://thredds.d4science.org/thredds/fileServer/public/netcdf/ClimateChange/hcaf_v6_1950_2100.nc",
+				
+				
+				// *********** NETCDF 3
+				
+				"/Users/FabioISTI/Downloads/Aaptos_aaptos.nc",
+				"/Users/FabioISTI/Downloads/dataset-armor-3d-rep-monthly_20181115T1200Z_P20190301T0000Z.nc",
+				//"/Users/FabioISTI/Downloads/data_retro_Run_10026_911.nc",
+				//"/Users/FabioISTI/Downloads/2BPR6_2021_a_NRT_Gosud_V3.nc",
+				"/Users/FabioISTI/Downloads/GO_WTEP_2015_TRAJ.nc"
+				
+		};
 		
-		File temp=File.createTempFile("temp", ".temp");
-		File original=new File("/home/fabio/Downloads/oscar_vel2011_180.nc");
-		File copied=File.createTempFile("copied", ".nc");
-		transferStream(new FileInputStream(original),new FileOutputStream(temp));
-		System.out.println("copied. Moving..");	
-		
-		System.out.println("Checksum original : "+getChecksum(original));
-		System.out.println("Checksum temp : "+getChecksum(temp));
+		for(String f:toCheckFiles) {
+			System.out.println("checking "+f);
+			try{
+				check(false,f);
+			}catch(Exception e) {
+				System.err.println(e.getMessage());
+				System.out.println("Trying opening "+f+" manually");
+				open(f);
+			}
+		}
+		System.out.println("Done");
+	}
+
+	
+	private static void open(String path) throws IOException, UnsupportedStorageException, DataStoreException {
+		System.out.println("Opening "+path);
+		NetcdfFile f=NetcdfFile.open(path);
+		System.out.println(f.getFileTypeDescription()+"\t"+f.getFileTypeId());
 		
 		
+		NetcdfDataset ncDs=NetcdfDataset.openDataset(path);
+//		NcMLReaderNew.
+//		
+		System.out.println(ncDs.getFileTypeDescription()+"\t"+ncDs.getFileTypeId());
+		
+//		NetcdfDatasets.openFile(path,null);
+		
+		
+	}
+	
+	
+	private static void check(boolean checkCopy,String src) throws UnsupportedStorageException, DataStoreException, IOException, NoSuchAlgorithmException, JAXBException {
+
+		File original=new File(src);
+		
+		File dataset=original;
+		
+		if(checkCopy) {
+			File temp=File.createTempFile("temp", ".temp");
+			File copied=File.createTempFile("copied", ".nc");			
+			transferStream(new FileInputStream(original),new FileOutputStream(temp));
+			System.out.println("copied. Moving..");	
+
+			System.out.println("Checksum original : "+getChecksum(original));
+			System.out.println("Checksum temp : "+getChecksum(temp));
+
+
+
+			Files.move(temp.toPath(), copied.toPath(),StandardCopyOption.ATOMIC_MOVE,StandardCopyOption.REPLACE_EXISTING);
+			if(copied.length()<original.length()) throw new RuntimeException("Different size after moving");
+			
+			dataset=copied;
+			
+		}
+
+
+		if(dataset.exists())
+			System.out.println(
+					ISOMetadataMarshalling.asXML(SisPlugin.getMetaFromFile(dataset)).getAbsolutePath());
+		else {
+			System.out.println(
+					ISOMetadataMarshalling.asXML(SisPlugin.getMetaFromFile(new URL(src))).getAbsolutePath());
+		}
 		
-		Files.move(temp.toPath(), copied.toPath(),StandardCopyOption.ATOMIC_MOVE,StandardCopyOption.REPLACE_EXISTING);
-		if(copied.length()<original.length()) throw new RuntimeException("Different size after moving");
-		System.out.println(SisPlugin.getMetaFromFile(copied));
 
 	}
 
-
 	
+	
+
 	private static String getChecksum(File datafile) throws NoSuchAlgorithmException, IOException {
 		MessageDigest md = MessageDigest.getInstance("SHA1");
-		 FileInputStream fis = new FileInputStream(datafile);
-		    byte[] dataBytes = new byte[1024];
+		FileInputStream fis = new FileInputStream(datafile);
+		byte[] dataBytes = new byte[1024];
 
-		    int nread = 0;
+		int nread = 0;
 
-		    while ((nread = fis.read(dataBytes)) != -1) {
-		      md.update(dataBytes, 0, nread);
-		    };
+		while ((nread = fis.read(dataBytes)) != -1) {
+			md.update(dataBytes, 0, nread);
+		};
 
-		    byte[] mdbytes = md.digest();
+		byte[] mdbytes = md.digest();
 
-		    //convert the byte to hex format
-		    StringBuffer sb = new StringBuffer("");
-		    for (int i = 0; i < mdbytes.length; i++) {
-		    	sb.append(Integer.toString((mdbytes[i] & 0xff) + 0x100, 16).substring(1));
-		    }
+		//convert the byte to hex format
+		StringBuffer sb = new StringBuffer("");
+		for (int i = 0; i < mdbytes.length; i++) {
+			sb.append(Integer.toString((mdbytes[i] & 0xff) + 0x100, 16).substring(1));
+		}
 
 		return sb.toString();
 	}
-	
+
 
 	private static void transferStream(InputStream in, OutputStream out){
 
@@ -74,12 +151,12 @@ public class TestGetMetadata {
 			while ((received=in.read(internalBuf))!=-1){
 				out.write(internalBuf,0,received);
 				receivedTotal+=received;
-								            
+
 			}
 			out.flush();
 		}catch(IOException e){			
 			throw new RuntimeException("Unable to read from source.");
 		}		
 	}
-	
+
 }

src/test/java/org/gcube/data/transfer/plugins/sis/TokenSetter.java

@@ -0,0 +1,33 @@
+package org.gcube.data.transfer.plugins.sis;
+
+import java.util.Properties;
+
+import org.gcube.common.authorization.library.provider.SecurityTokenProvider;
+import org.gcube.common.scope.api.ScopeProvider;
+
+import lombok.extern.slf4j.Slf4j;
+@Slf4j
+public class TokenSetter {
+
+	
+private static Properties props=new Properties();
+	
+	static{
+		try {
+			props.load(TokenSetter.class.getResourceAsStream("/tokens.properties"));
+		} catch (Exception e) {
+			throw new RuntimeException("YOU NEED TO SET TOKEN FILE IN CONFIGURATION");
+		}
+	}
+	
+
+	public static void set(String scope){
+		try{
+			if(!props.containsKey(scope)) throw new RuntimeException("No token found for scope : "+scope);
+			SecurityTokenProvider.instance.set(props.getProperty(scope));
+		}catch(Throwable e){
+			log.warn("Unable to set token for scope "+scope,e);
+		}
+		ScopeProvider.instance.set(scope);
+	}
+}