rstudio-d4science/Dockerfile

FROM d4science/rstudio-base:2023-03-R4-2

LABEL org.d4science.image.licenses="EUPL-1.2" \
      org.d4science.image.source="https://code-repo.d4science.org/gCubeSystem/rstudio-d4science" \
      org.d4science.image.vendor="D4Science <https://www.d4science.org>" \
      org.d4science.image.authors="Andrea Dell'Amico <andrea.dellamico@isti.cnr.it>"

# R and python3 packages required by wb3 ecosystem https://support.d4science.org/issues/26459
COPY wb3-install2r-packages.txt /rocker_scripts
RUN for f in `cat /rocker_scripts/wb3-install2r-packages.txt` ; do install2.r --error --skipinstalled --ncpus -1 $f || exit 1 ; done

RUN pip3 install \
    numpy \
    mbtr \
    pandas

ENV DEBIAN_FRONTEND noninteractive
# Upgrade, install some R dependencies and base python3
# Add libcurl4-gnutls-dev and remove libcurl4-openssl-dev because
#
# libraptor2-dev : Depends: libcurl4-gnutls-dev but it is not installable
RUN apt-get update --yes && \
    apt-get install --yes --no-install-recommends \
    libglpk40

RUN mkdir -p /opt/workspace-lib
RUN mkdir /var/log/workspace-lib
ADD https://maven.d4science.org/nexus/content/repositories/gcube-snapshots/org/gcube/data-access/sh-fuse-integration/2.0.0-SNAPSHOT/sh-fuse-integration-2.0.0-20211005.090627-1-jar-with-dependencies.jar /opt/workspace-lib/fuse-workspace.jar
RUN chmod 0644 /opt/workspace-lib/fuse-workspace.jar

# Rstudio settings
COPY rsession.conf /etc/rstudio/rsession.conf
RUN chmod 0644 /etc/rstudio/rsession.conf
RUN curl -o "${R_HOME}/etc/Rprofile.site" "https://code-repo.d4science.org/gCubeSystem/rstudio-rprofile/raw/branch/master/jupyter-Rprofile.site"