See https://support.d4science.org/issues/26459 wb3 ecosystem

Dockerfile

@@ -5,6 +5,17 @@ LABEL org.d4science.image.licenses="EUPL-1.2" \
       org.d4science.image.vendor="D4Science <https://www.d4science.org>" \
       org.d4science.image.authors="Andrea Dell'Amico <andrea.dellamico@isti.cnr.it>"
 
+# R and python3 packages required by wb3 ecosystem https://support.d4science.org/issues/26459
+COPY wb3-install2r-packages.txt /rocker_scripts
+RUN for f in `cat //rocker_scripts/wb3-install2r-packages.txt` ; do install2.r --error --skipinstalled --ncpus -1 $f || exit 1 ; done
+
+RUN pip3 install \
+    numpy \
+    mbtr \
+    pandas \
+    pickle
+
+# Rstudio settings
 COPY rsession.conf /etc/rstudio/rsession.conf
 RUN chmod 0644 /etc/rstudio/rsession.conf
 RUN curl -o "${R_HOME}/etc/Rprofile.site" "https://code-repo.d4science.org/gCubeSystem/rstudio-rprofile/raw/branch/master/jupyter-Rprofile.site"

Jenkinsfile-wb3-ecosystem

@@ -0,0 +1,65 @@
+// REMEMBER TO FILL THE environment section with your values.
+// the following filed should be filled: imagename, git_url
+// REMEMBER to put your Dockerfile in the root folder of your project
+// The related jenkinsjob template is here: 
+
+
+pipeline {
+  agent {
+      label 'docker'
+  }
+  environment {
+    imagename = "hub.d4science.org/rstudio/rstudio-wb3-ecosystem"
+    registryUrl 'https://hub.d4science.org'
+    registryCredential = 'cccd3cf5-9d6c-4044-85d6-59bede0c43f4'
+    dockerImage = ''
+    git_url='https://code-repo.d4science.org/gCubeSystem/rstudio-d4science.git'
+  }
+  stages {
+    // stage('Cloning Git') {
+    //   steps {
+    //     git([url: git_url, branch: 'wb3-ecosystem', credentialsId: '88b54962-1c0e-49cb-8155-22276860f346'])
+    //   }
+    // }
+    stage('Building image') {
+      steps{
+        script {
+          dockerImage = docker.build imagename
+        }
+      }
+    }
+    stage('Deploy Image') {
+      steps{
+        script {
+          docker.withRegistry( 'https://hub.d4science.org', registryCredential ) {
+            dockerImage.push("$BUILD_NUMBER")
+            dockerImage.push('wb3-ecosystem')
+          }
+        }
+      }
+    }
+    stage('Remove Unused docker image') {
+      steps{
+        sh "docker rmi $imagename:$BUILD_NUMBER"
+        sh "docker rmi $imagename:wb3-ecosystem"
+
+      }
+    }
+  }
+          // post-build actions
+    post {
+        success {
+            echo 'The docker pipeline worked!'
+            emailext to: 'jenkinsbuilds@d4science.org',
+                    subject: "[Jenkins DockerPipeline D4S] build ${currentBuild.fullDisplayName} worked",
+                    body: "Build time: ${currentBuild.durationString}. See ${env.BUILD_URL}"
+        }
+        failure {
+            echo 'The docker pipeline has failed'
+            emailext attachLog: true,
+                    to: 'jenkinsbuilds@d4science.org',
+                    subject: "[Jenkins DockerPipeline D4S] build ${currentBuild.fullDisplayName} failed for image  ${imagename}",
+                    body: "Something is wrong with ${env.BUILD_URL}"
+        }
+    }
+}

wb3-install2r-packages.txt

@@ -0,0 +1,28 @@
+abind
+caret
+corrplot
+devtools
+dendextend
+ncdf4
+parallel
+pdftools
+rgbif
+reticulate
+tidyverse
+tidymodels
+raster
+DALEX
+DALEXtra
+xgboost
+RSQLite
+feather
+vroom
+virtualspecies
+usdm
+robis
+RColorBrewer
+fields
+pastecs
+ecospat
+mvrsquared
+bestNormalize