Fixing update properties
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/information-system/resource-registry@134816 82a268e6-3cf1-43bd-a215-b396298e98cf
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@ -52,6 +52,7 @@ import com.tinkerpop.blueprints.Direction;
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import com.tinkerpop.blueprints.Edge;
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import com.tinkerpop.blueprints.Element;
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import com.tinkerpop.blueprints.Vertex;
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import com.tinkerpop.blueprints.impls.orient.OrientBaseGraph;
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import com.tinkerpop.blueprints.impls.orient.OrientEdge;
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import com.tinkerpop.blueprints.impls.orient.OrientGraph;
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import com.tinkerpop.blueprints.impls.orient.OrientVertex;
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@ -62,6 +63,52 @@ import com.tinkerpop.blueprints.impls.orient.OrientVertex;
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*/
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public class EntityManagementImpl implements EntityManagement {
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public static final Set<String> RELATION_IGNORE_KEYS;
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public static final Set<String> RELATION_IGNORE_START_WITH_KEYS;
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public static final Set<String> ENTITY_IGNORE_KEYS;
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public static final Set<String> ENTITY_IGNORE_START_WITH_KEYS;
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public static final Set<String> EMBEDDED_IGNORE_KEYS;
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public static final Set<String> EMBEDDED_IGNORE_START_WITH_KEYS;
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public static final String AT = "@";
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public static final String UNDERSCORE = "_";
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static {
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RELATION_IGNORE_KEYS = new HashSet<String>();
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RELATION_IGNORE_KEYS.add(Relation.HEADER_PROPERTY);
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RELATION_IGNORE_KEYS.add(Relation.TARGET_PROPERTY);
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RELATION_IGNORE_KEYS.add(Relation.SOURCE_PROPERTY);
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RELATION_IGNORE_KEYS.add(OrientBaseGraph.CONNECTION_IN.toLowerCase());
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RELATION_IGNORE_KEYS.add(OrientBaseGraph.CONNECTION_OUT.toLowerCase());
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RELATION_IGNORE_KEYS.add(OrientBaseGraph.CONNECTION_IN.toUpperCase());
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RELATION_IGNORE_KEYS.add(OrientBaseGraph.CONNECTION_OUT.toUpperCase());
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RELATION_IGNORE_START_WITH_KEYS = new HashSet<String>();
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RELATION_IGNORE_START_WITH_KEYS.add(AT);
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RELATION_IGNORE_START_WITH_KEYS.add(UNDERSCORE);
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ENTITY_IGNORE_KEYS = new HashSet<String>();
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ENTITY_IGNORE_KEYS.add(Entity.HEADER_PROPERTY);
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ENTITY_IGNORE_START_WITH_KEYS = new HashSet<String>();
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ENTITY_IGNORE_START_WITH_KEYS.add(OrientVertex.CONNECTION_IN_PREFIX.toLowerCase());
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ENTITY_IGNORE_START_WITH_KEYS.add(OrientVertex.CONNECTION_OUT_PREFIX.toLowerCase());
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ENTITY_IGNORE_START_WITH_KEYS.add(OrientVertex.CONNECTION_IN_PREFIX.toUpperCase());
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ENTITY_IGNORE_START_WITH_KEYS.add(OrientVertex.CONNECTION_OUT_PREFIX.toUpperCase());
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ENTITY_IGNORE_START_WITH_KEYS.add(AT);
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ENTITY_IGNORE_START_WITH_KEYS.add(UNDERSCORE);
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EMBEDDED_IGNORE_KEYS = new HashSet<String>();
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EMBEDDED_IGNORE_START_WITH_KEYS = new HashSet<String>();
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ENTITY_IGNORE_START_WITH_KEYS.add(AT);
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ENTITY_IGNORE_START_WITH_KEYS.add(UNDERSCORE);
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}
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private static Logger logger = LoggerFactory
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.getLogger(EntityManagementImpl.class);
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@ -210,7 +257,7 @@ public class EntityManagementImpl implements EntityManagement {
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throw new ResourceRegistryException(
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"An embedded object cannot have an Header");
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}
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ODocument oDocument = new ODocument(type);
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return oDocument.fromJSON(jsonNode.toString());
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@ -277,29 +324,36 @@ public class EntityManagementImpl implements EntityManagement {
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}
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public static Map<String, Object> getPropertyMap(JsonNode jsonNode,
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Set<String> ignoreKeys) throws JsonProcessingException, IOException {
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Set<String> ignoreKeys, Set<String> ignoreStartWith) throws JsonProcessingException, IOException {
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Map<String, Object> map = new HashMap<>();
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if (ignoreKeys == null) {
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ignoreKeys = new HashSet<>();
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}
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if (ignoreStartWith == null) {
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ignoreStartWith = new HashSet<>();
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}
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Iterator<Entry<String, JsonNode>> fields = jsonNode.fields();
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OUTER_WHILE:
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while (fields.hasNext()) {
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Entry<String, JsonNode> entry = fields.next();
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String key = entry.getKey();
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if (key.compareTo(Entity.HEADER_PROPERTY) == 0) {
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continue;
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}
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if (key.startsWith("@") || key.startsWith("_")) {
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continue;
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}
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if (ignoreKeys.contains(key)) {
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continue;
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}
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for(String prefix : ignoreStartWith){
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if(key.startsWith(prefix)){
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break OUTER_WHILE;
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}
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}
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JsonNode value = entry.getValue();
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Object object = null;
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try {
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@ -318,10 +372,9 @@ public class EntityManagementImpl implements EntityManagement {
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private Map<String, Object> getVertexProperties(JsonNode node)
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throws ResourceRegistryException {
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Set<String> ignoreKeys = new HashSet<>();
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Map<String, Object> vertexProperties = null;
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try {
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vertexProperties = getPropertyMap(node, ignoreKeys);
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vertexProperties = getPropertyMap(node, ENTITY_IGNORE_KEYS, ENTITY_IGNORE_START_WITH_KEYS);
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} catch (Exception e) {
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String error = "Error while parsing json to get Relation properties";
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logger.error(error, e);
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@ -332,14 +385,9 @@ public class EntityManagementImpl implements EntityManagement {
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private Map<String, Object> getEdgeProperties(JsonNode node)
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throws ResourceRegistryException {
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Set<String> ignoreKeys = new HashSet<>();
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ignoreKeys.add(Relation.TARGET_PROPERTY);
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ignoreKeys.add(Relation.SOURCE_PROPERTY);
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ignoreKeys.add(Relation.HEADER_PROPERTY);
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Map<String, Object> edgeProperties = null;
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try {
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edgeProperties = getPropertyMap(node, ignoreKeys);
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edgeProperties = getPropertyMap(node, RELATION_IGNORE_KEYS, RELATION_IGNORE_START_WITH_KEYS);
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} catch (Exception e) {
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String error = "Error while parsing json to get Relation properties";
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logger.error(error, e);
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@ -348,6 +396,62 @@ public class EntityManagementImpl implements EntityManagement {
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return edgeProperties;
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}
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private Element updateProperties(Element element, JsonNode jsonNode)
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throws ResourceRegistryException {
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Set<String> ignoreKeys = null;
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Set<String> ignoreStartWithKeys = null;
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Set<String> oldKeys = element.getPropertyKeys();
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Map<String, Object> properties;
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if (element instanceof Vertex) {
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properties = getVertexProperties(jsonNode);
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ignoreKeys = EMBEDDED_IGNORE_KEYS;
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ignoreStartWithKeys = EMBEDDED_IGNORE_START_WITH_KEYS;
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} else if (element instanceof Edge) {
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properties = getEdgeProperties(jsonNode);
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ignoreKeys = RELATION_IGNORE_KEYS;
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ignoreStartWithKeys = RELATION_IGNORE_START_WITH_KEYS;
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} else {
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String error = String.format("Error while updating {} properties",
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element.toString());
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throw new ResourceRegistryException(error);
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}
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oldKeys.removeAll(properties.keySet());
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for (String key : properties.keySet()) {
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try {
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element.setProperty(key, properties.get(key));
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} catch (Exception e) {
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String error = String.format(
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"Error while setting property %s : %s", key, properties
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.get(key).toString());
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logger.error(error);
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throw new ResourceRegistryException(error, e);
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}
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}
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OUTER_FOR:
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for (String key : oldKeys) {
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if (ignoreKeys.contains(key)) {
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continue;
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}
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for(String prefix : ignoreStartWithKeys){
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if(key.startsWith(prefix)){
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break OUTER_FOR;
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}
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}
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element.removeProperty(key);
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}
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return element;
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}
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private Vertex getOrCreateTargetVertex(OrientGraph orientGraph,
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@SuppressWarnings("rawtypes") Class<? extends Relation> relation,
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JsonNode target) throws ResourceRegistryException {
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@ -745,48 +849,6 @@ public class EntityManagementImpl implements EntityManagement {
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}
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}
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private Element updateProperties(Element element, JsonNode jsonNode)
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throws ResourceRegistryException {
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Set<String> oldKeys = element.getPropertyKeys();
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Map<String, Object> properties;
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if (element instanceof Vertex) {
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properties = getVertexProperties(jsonNode);
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} else if (element instanceof Edge) {
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properties = getEdgeProperties(jsonNode);
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} else {
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String error = String.format("Error while updating {} properties",
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element.toString());
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throw new ResourceRegistryException(error);
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}
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oldKeys.removeAll(properties.keySet());
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for (String key : properties.keySet()) {
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try {
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element.setProperty(key, properties.get(key));
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} catch (Exception e) {
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String error = String.format(
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"Error while setting property %s : %s", key, properties
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.get(key).toString());
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logger.error(error);
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throw new ResourceRegistryException(error, e);
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}
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}
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for (String key : oldKeys) {
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if (key.startsWith("@") || key.startsWith("_")) {
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continue;
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}
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if (key.compareTo(Facet.HEADER_PROPERTY) == 0) {
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continue;
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}
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element.removeProperty(key);
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}
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return element;
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}
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protected Vertex updateFacet(OrientGraph orientGraph, UUID uuid,
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JsonNode jsonNode) throws ResourceRegistryException {
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logger.debug("Trying to update {} with UUID {} usign {}", Facet.NAME,
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@ -9,6 +9,8 @@ import java.io.FileReader;
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import java.io.IOException;
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import java.lang.management.ManagementFactory;
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import java.lang.management.OperatingSystemMXBean;
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import java.net.InetAddress;
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import java.net.UnknownHostException;
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import java.nio.file.FileStore;
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import java.nio.file.Files;
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import java.nio.file.Paths;
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@ -25,8 +27,13 @@ import org.gcube.informationsystem.impl.embedded.HeaderImpl;
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import org.gcube.informationsystem.impl.entity.facet.CPUFacetImpl;
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import org.gcube.informationsystem.impl.entity.facet.ContainerStateFacetImpl;
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import org.gcube.informationsystem.impl.entity.facet.MemoryFacetImpl;
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import org.gcube.informationsystem.impl.entity.facet.NetworkingFacetImpl;
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import org.gcube.informationsystem.impl.entity.facet.SimplePropertyFacetImpl;
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import org.gcube.informationsystem.impl.entity.facet.SoftwareFacetImpl;
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import org.gcube.informationsystem.impl.entity.resource.HostingNodeImpl;
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import org.gcube.informationsystem.impl.relation.IsIdentifiedByImpl;
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import org.gcube.informationsystem.impl.relation.consistsof.HasPersistentMemoryImpl;
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import org.gcube.informationsystem.impl.relation.consistsof.HasVolatileMemoryImpl;
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import org.gcube.informationsystem.impl.utils.Entities;
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import org.gcube.informationsystem.model.embedded.Header;
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import org.gcube.informationsystem.model.entity.Facet;
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@ -35,10 +42,14 @@ import org.gcube.informationsystem.model.entity.facet.CPUFacet;
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import org.gcube.informationsystem.model.entity.facet.ContainerStateFacet;
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import org.gcube.informationsystem.model.entity.facet.MemoryFacet;
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import org.gcube.informationsystem.model.entity.facet.MemoryFacet.MemoryUnit;
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import org.gcube.informationsystem.model.entity.facet.NetworkingFacet;
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import org.gcube.informationsystem.model.entity.facet.SimplePropertyFacet;
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import org.gcube.informationsystem.model.entity.facet.SoftwareFacet;
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import org.gcube.informationsystem.model.entity.resource.EService;
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import org.gcube.informationsystem.model.entity.resource.HostingNode;
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import org.gcube.informationsystem.model.relation.ConsistsOf;
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import org.gcube.informationsystem.model.relation.IsIdentifiedBy;
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import org.gcube.informationsystem.model.relation.consistsof.HasPersistentMemory;
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import org.gcube.informationsystem.model.relation.consistsof.HasVolatileMemory;
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import org.gcube.informationsystem.resourceregistry.api.exceptions.ResourceRegistryException;
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import org.junit.Test;
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@ -107,7 +118,6 @@ public class SmartgearResourcesTest {
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Header header = new HeaderImpl(uuid);
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hostingNode.setHeader(header);
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/*
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NetworkingFacet networkingFacet = new NetworkingFacetImpl();
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try {
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networkingFacet.setIPAddress(InetAddress.getLocalHost().getHostAddress());
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@ -138,37 +148,28 @@ public class SmartgearResourcesTest {
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SimplePropertyFacet simplePropertyFacet = addEnvironmentVariables();
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hostingNode.addFacet(simplePropertyFacet);
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*/
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ContainerStateFacet containerStateFacet = getContainerStateFacet(null);
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hostingNode.addFacet(containerStateFacet);
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/*
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MemoryFacet ramFacet = getRamInfo(null);
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HasVolatileMemory<HostingNode, MemoryFacet> hasVolatileRAMMemory =
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new HasVolatileMemoryImpl<HostingNode, MemoryFacet>(
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hostingNode, ramFacet, null);
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hasVolatileRAMMemory.setAdditionalProperty(MEMORY_TYPE, MEMORY_TYPE_RAM);
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hostingNode.addFacet(hasVolatileRAMMemory);
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*/
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/*
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MemoryFacet jvmMemoryFacet = getJVMMemoryInfo(null);
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HasVolatileMemory<HostingNode, MemoryFacet> hasVolatileJVMMemory =
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new HasVolatileMemoryImpl<HostingNode, MemoryFacet>(
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hostingNode, jvmMemoryFacet, null);
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hasVolatileJVMMemory.setAdditionalProperty(MEMORY_TYPE, MEMORY_TYPE_JVM);
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hostingNode.addFacet(hasVolatileJVMMemory);
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*/
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/*
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MemoryFacet disk = getDiskSpace(null);
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HasPersistentMemory<HostingNode, MemoryFacet> hasPersistentMemory =
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new HasPersistentMemoryImpl<HostingNode, MemoryFacet>(hostingNode, disk, null);
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hostingNode.addFacet(hasPersistentMemory);
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*/
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String json = entityManagementImpl.createResource(HostingNode.NAME, Entities.marshal(hostingNode));
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@ -179,40 +180,33 @@ public class SmartgearResourcesTest {
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List<ConsistsOf<? extends Resource, ? extends Facet>> consistsOfList = hostingNodeToUpdate.getConsistsOf();
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for(ConsistsOf<? extends Resource, ? extends Facet> c : consistsOfList){
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/*
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if(c.getTarget() instanceof ContainerStateFacet){
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containerStateFacet = (ContainerStateFacet) c.getTarget();
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containerStateFacet = getContainerStateFacet(containerStateFacet);
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continue;
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}
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*/
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if(c instanceof HasVolatileMemory){
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/*
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String memoryType = (String) c.getAdditionalProperty(MEMORY_TYPE);
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if(memoryType.compareTo(MEMORY_TYPE_RAM)==0){
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ramFacet = (MemoryFacet) c.getTarget();
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ramFacet = getRamInfo(ramFacet);
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continue;
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}
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*/
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/*
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if(memoryType.compareTo(MEMORY_TYPE_JVM)==0){
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jvmMemoryFacet = (MemoryFacet) c.getTarget();
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jvmMemoryFacet = getJVMMemoryInfo(jvmMemoryFacet);
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continue;
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}
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*/
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}
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/*
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if(c instanceof HasPersistentMemory){
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disk = (MemoryFacet) c.getTarget();
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disk = getDiskSpace(disk);
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continue;
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}
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*/
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consistsOfToRemove.add(c);
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