Fixing resource-registry due to model redesign
This commit is contained in:
parent
10e5feb9d9
commit
495cba3145
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@ -4,19 +4,26 @@ import java.io.File;
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import java.io.InputStream;
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import java.net.URL;
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import java.security.Key;
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import java.util.ArrayList;
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import java.util.HashMap;
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import java.util.List;
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import java.util.Map;
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import java.util.Properties;
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import java.util.ServiceLoader;
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import java.util.UUID;
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import org.gcube.common.encryption.SymmetricKey;
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import org.gcube.informationsystem.base.reference.AccessType;
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import org.gcube.informationsystem.base.reference.ISConstants;
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import org.gcube.informationsystem.base.reference.ISManageable;
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import org.gcube.informationsystem.resourceregistry.context.ContextUtility;
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import org.gcube.informationsystem.resourceregistry.context.security.AdminSecurityContext;
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import org.gcube.informationsystem.resourceregistry.context.security.ContextSecurityContext;
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import org.gcube.informationsystem.resourceregistry.context.security.SchemaSecurityContext;
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import org.gcube.informationsystem.resourceregistry.context.security.SecurityContext.PermissionMode;
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import org.gcube.informationsystem.types.reference.TypeDefinition;
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import org.gcube.informationsystem.utils.discovery.ISMDiscovery;
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import org.gcube.informationsystem.utils.discovery.RegistrationProvider;
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import org.gcube.informationsystem.utils.discovery.SchemaAction;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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@ -202,8 +209,27 @@ public class DatabaseEnvironment {
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schemaSecurityContext.create();
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List<Package> packages = new ArrayList<Package>();
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@SuppressWarnings("rawtypes")
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Class<TypeDefinition> tdClz = TypeDefinition.class;
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packages.add(tdClz.getPackage());
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AccessType[] accessTypes = AccessType.values();
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for(AccessType accessType : accessTypes) {
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Class<ISManageable> clz = accessType.getTypeClass();
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packages.add(clz.getPackage());
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}
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ServiceLoader<? extends RegistrationProvider> regsitrationProviders = ServiceLoader
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.load(RegistrationProvider.class);
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for(RegistrationProvider registrationProvider : regsitrationProviders) {
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packages.addAll(registrationProvider.getPackagesToRegister());
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}
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SchemaAction schemaAction = new SchemaActionImpl();
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ISMDiscovery.manageISM(schemaAction);
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ISMDiscovery.manageISM(schemaAction, packages);
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}
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logger.info("Database Connection has been properly initialized");
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@ -44,7 +44,7 @@ public class SchemaActionImpl implements SchemaAction {
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} else if(IsRelatedTo.class.isAssignableFrom(r)) {
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schemaManagement.create(json, AccessType.IS_RELATED_TO);
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} else {
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schemaManagement.create(json, AccessType.RELATION);
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schemaManagement.create(json, AccessType.BASE_RELATION);
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}
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} catch(SchemaAlreadyPresentException sape) {
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logger.warn("{} already exists. It will be ignored", TypeBinder.getType(r));
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@ -66,7 +66,7 @@ public class SchemaActionImpl implements SchemaAction {
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} else if(Resource.class.isAssignableFrom(e)) {
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schemaManagement.create(json, AccessType.RESOURCE);
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} else {
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schemaManagement.create(json, AccessType.ENTITY);
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schemaManagement.create(json, AccessType.BASE_ENTITY);
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}
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} catch(SchemaAlreadyPresentException sape) {
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logger.warn("{} already exists. It will be ignored", TypeBinder.getType(e));
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@ -82,7 +82,7 @@ public class SchemaActionImpl implements SchemaAction {
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((SchemaManagementImpl) schemaManagement).setTypeName(TypeBinder.getType(e));
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String json = TypeBinder.serializeType(e);
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logger.trace(json);
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schemaManagement.create(json, AccessType.PROPERTY);
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schemaManagement.create(json, AccessType.BASE_PROPERTY);
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} catch(SchemaAlreadyPresentException sape) {
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logger.warn("{} already exists. It will be ignored", TypeBinder.getType(e));
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} catch(Exception ex) {
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@ -80,6 +80,7 @@ public class SchemaManager {
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AccessType accessType = null;
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String firstGotType = null;
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try {
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@SuppressWarnings("unchecked")
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Set<String> superClasses = TypeBinder.deserializeTypeDefinition(json).getSuperClasses();
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if(superClasses.size()==0) {
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throw new ResourceRegistryException("No superclasses defined");
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@ -3,9 +3,9 @@ package org.gcube.informationsystem.resourceregistry.schema;
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import java.util.Iterator;
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import org.gcube.informationsystem.base.reference.AccessType;
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import org.gcube.informationsystem.model.reference.entities.Entity;
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import org.gcube.informationsystem.model.reference.properties.Property;
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import org.gcube.informationsystem.model.reference.relations.Relation;
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import org.gcube.informationsystem.base.reference.entities.BaseEntity;
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import org.gcube.informationsystem.base.reference.properties.BaseProperty;
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import org.gcube.informationsystem.base.reference.relations.BaseRelation;
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import org.gcube.informationsystem.resourceregistry.api.exceptions.schema.SchemaException;
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import org.gcube.informationsystem.resourceregistry.api.exceptions.schema.SchemaNotFoundException;
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import org.gcube.informationsystem.resourceregistry.context.ContextUtility;
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@ -63,13 +63,13 @@ public class SchemaContextManagement implements SchemaManagement {
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orientGraph = adminSecurityContext.getGraph(PermissionMode.WRITER);
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@SuppressWarnings("rawtypes")
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TypeDefinition<? extends TypeDefinition> typeDefinition = TypeBinder.deserializeTypeDefinition(json);
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TypeDefinition typeDefinition = TypeBinder.deserializeTypeDefinition(json);
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if(Entity.class.isAssignableFrom(baseType.getTypeClass())) {
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if(BaseEntity.class.isAssignableFrom(baseType.getTypeClass())) {
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OrientVertex orientVertex = orientGraph.addVertex("class:" + typeDefinition.getName());
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orientVertex.setProperty(SCHEMA, json);
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orientVertex.save();
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} else if(Relation.class.isAssignableFrom(baseType.getTypeClass())) {
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} else if(BaseRelation.class.isAssignableFrom(baseType.getTypeClass())) {
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@SuppressWarnings("rawtypes")
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String sourceClass = ((RelationTypeDefinition) typeDefinition).getSourceType();
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Vertex source = getVertex(orientGraph, sourceClass);
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@ -82,7 +82,7 @@ public class SchemaContextManagement implements SchemaManagement {
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orientEdge.setProperty(SCHEMA, json);
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orientEdge.save();
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} else if(Property.class.isAssignableFrom(baseType.getTypeClass())) {
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} else if(BaseProperty.class.isAssignableFrom(baseType.getTypeClass())) {
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ODocument doc = new ODocument(typeDefinition.getName());
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doc.field(SCHEMA, json);
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doc.save();
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@ -5,6 +5,7 @@ package org.gcube.informationsystem.resourceregistry.schema;
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import java.util.ArrayList;
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import java.util.Collection;
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import java.util.Iterator;
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import java.util.List;
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import java.util.Set;
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import java.util.concurrent.Callable;
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@ -16,6 +17,9 @@ import javax.activation.UnsupportedDataTypeException;
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import org.gcube.informationsystem.base.reference.AccessType;
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import org.gcube.informationsystem.base.reference.ISManageable;
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import org.gcube.informationsystem.base.reference.entities.BaseEntity;
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import org.gcube.informationsystem.base.reference.properties.BaseProperty;
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import org.gcube.informationsystem.base.reference.relations.BaseRelation;
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import org.gcube.informationsystem.model.reference.entities.Entity;
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import org.gcube.informationsystem.model.reference.entities.Resource;
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import org.gcube.informationsystem.model.reference.properties.Property;
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@ -28,12 +32,20 @@ import org.gcube.informationsystem.resourceregistry.api.exceptions.schema.Schema
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import org.gcube.informationsystem.resourceregistry.context.ContextUtility;
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import org.gcube.informationsystem.resourceregistry.context.security.AdminSecurityContext;
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import org.gcube.informationsystem.resourceregistry.context.security.SecurityContext.PermissionMode;
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import org.gcube.informationsystem.types.Type;
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import org.gcube.informationsystem.types.TypeBinder;
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import org.gcube.informationsystem.types.reference.TypeDefinition;
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import org.gcube.informationsystem.types.reference.entities.EntityTypeDefinition;
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import org.gcube.informationsystem.types.reference.properties.PropertyDefinition;
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import org.gcube.informationsystem.types.reference.properties.PropertyTypeDefinition;
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import org.gcube.informationsystem.types.reference.relations.RelationTypeDefinition;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import com.fasterxml.jackson.databind.JsonNode;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import com.fasterxml.jackson.databind.node.ArrayNode;
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import com.fasterxml.jackson.databind.node.ObjectNode;
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import com.orientechnologies.orient.core.db.ODatabaseSession;
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import com.orientechnologies.orient.core.exception.OSchemaException;
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import com.orientechnologies.orient.core.metadata.OMetadata;
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@ -127,28 +139,54 @@ public class SchemaManagementImpl implements SchemaManagement {
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}
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}
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protected static <ISM extends ISManageable> TypeDefinition<ISM> getTypeDefinition(OClass oClass) throws SchemaException {
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@SuppressWarnings("rawtypes")
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protected static TypeDefinition getTypeDefinition(OClass oClass) throws SchemaException {
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// TODO OrientSerilizatoin is not acceptable anymore since TypeDefiniton introduction
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ODocument oDocument = ((OClassImpl) oClass).toStream();
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String json = oDocument.toJSON();
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try {
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return TypeBinder.deserializeTypeDefinition(json);
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ObjectMapper mapper = new ObjectMapper();
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ObjectNode node = (ObjectNode) mapper.readTree(json);
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if(oClass.isSubClassOf(BaseProperty.NAME)) {
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node.put(ISManageable.CLASS_PROPERTY, PropertyTypeDefinition.NAME);
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} else if(oClass.isSubClassOf(BaseEntity.NAME)) {
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node.put(ISManageable.CLASS_PROPERTY, EntityTypeDefinition.NAME);
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} else if(oClass.isSubClassOf(BaseRelation.NAME)) {
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node.put(ISManageable.CLASS_PROPERTY, RelationTypeDefinition.NAME);
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}
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ArrayNode arrayNode = (ArrayNode) node.get(TypeDefinition.PROPERTIES_PROPERTY);
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Iterator<JsonNode> iterator = arrayNode.iterator();
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while(iterator.hasNext()) {
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ObjectNode propertyNode = (ObjectNode) iterator.next();
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propertyNode.put(ISManageable.CLASS_PROPERTY, PropertyDefinition.NAME);
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}
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String managedJson = mapper.writeValueAsString(node);
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logger.trace("{} -> {}", json, managedJson);
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return TypeBinder.deserializeTypeDefinition(managedJson);
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} catch(Exception e) {
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throw new SchemaException(e);
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}
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}
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protected static <ISM extends ISManageable> String getTypeDefinitionAsString(OClass oClass) throws SchemaException {
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@SuppressWarnings({"rawtypes"})
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protected static String getTypeDefinitionAsString(OClass oClass) throws SchemaException {
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try {
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TypeDefinition<ISM> typeDefinition = getTypeDefinition(oClass);
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TypeDefinition typeDefinition = getTypeDefinition(oClass);
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return TypeBinder.serializeTypeDefinition(typeDefinition);
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} catch(Exception e) {
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throw new SchemaException(e);
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}
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}
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protected <ISM extends ISManageable> List<OClass> getSuperclassesAndCheckCompliancy(ODatabaseSession oDatabaseSession,
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TypeDefinition<ISM> typeDefinition, String baseType) throws SchemaException {
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@SuppressWarnings({"unchecked", "rawtypes"})
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protected List<OClass> getSuperclassesAndCheckCompliancy(ODatabaseSession oDatabaseSession,
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TypeDefinition typeDefinition, String baseType) throws SchemaException {
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Set<String> superClasses = typeDefinition.getSuperClasses();
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if(baseType != null) {
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@ -182,15 +220,35 @@ public class SchemaManagementImpl implements SchemaManagement {
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return oSuperclasses;
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}
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private static List<String> baseTypes;
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private static List<String> typeDefinitionTypes;
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static {
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baseTypes = new ArrayList<String>();
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baseTypes.add(BaseProperty.NAME);
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baseTypes.add(BaseEntity.NAME);
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baseTypes.add(BaseRelation.NAME);
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typeDefinitionTypes = new ArrayList<String>();
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typeDefinitionTypes.add(PropertyTypeDefinition.NAME);
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typeDefinitionTypes.add(EntityTypeDefinition.NAME);
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typeDefinitionTypes.add(RelationTypeDefinition.NAME);
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}
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protected String registerTypeSchema(String jsonSchema, AccessType baseType) throws SchemaException {
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ODatabaseSession oDatabaseSession = null;
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try {
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logger.info("Trying to register {} {}", baseType.getName(), jsonSchema);
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@SuppressWarnings("rawtypes")
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TypeDefinition<? extends TypeDefinition> typeDefinition = TypeBinder.deserializeTypeDefinition(jsonSchema);
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TypeDefinition typeDefinition = null;
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try {
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typeDefinition = TypeBinder.deserializeTypeDefinition(jsonSchema);
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logger.info("Trying to register {} {} : {}", baseType.getName(), typeDefinition.getName(), jsonSchema);
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}catch (Exception e) {
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logger.error("Error while trying to register {} {}", baseType.getName(), jsonSchema);
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throw e;
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}
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if(typeName.compareTo(typeDefinition.getName())!=0) {
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String error = String.format("Provided type name path argument %s does not match with the type name in the definition %S. Please be coherent.", typeName, typeDefinition.getName());
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@ -206,9 +264,9 @@ public class SchemaManagementImpl implements SchemaManagement {
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OClass oClass = null;
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if(Entity.class.isAssignableFrom(baseType.getTypeClass())) {
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if(BaseEntity.class.isAssignableFrom(baseType.getTypeClass())) {
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oClass = oDatabaseSession.createVertexClass(typeDefinition.getName());
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} else if(Relation.class.isAssignableFrom(baseType.getTypeClass())) {
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} else if(BaseRelation.class.isAssignableFrom(baseType.getTypeClass())) {
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oClass = oDatabaseSession.createEdgeClass(typeDefinition.getName());
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/*
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@ -217,7 +275,7 @@ public class SchemaManagementImpl implements SchemaManagement {
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* typeDefinition.getInBaseType();
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*/
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} else if(Property.class.isAssignableFrom(baseType.getTypeClass())) {
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} else if(BaseProperty.class.isAssignableFrom(baseType.getTypeClass())) {
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oClass = oSchema.createClass(typeDefinition.getName());
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} else {
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String error = String.format("Allowed superclass are %s, %s, %s, or any subclasses of them.",
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@ -247,31 +305,41 @@ public class SchemaManagementImpl implements SchemaManagement {
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typeDefinition.getName());
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}
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if(typeDefinition.getName().compareTo(Property.NAME) != 0) {
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if(! baseTypes.contains(typeDefinition.getName())) {
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List<OClass> oSuperclasses = getSuperclassesAndCheckCompliancy(oDatabaseSession, typeDefinition,
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baseType.getName());
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oClass.setSuperClasses(oSuperclasses);
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}
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if(Resource.class.isAssignableFrom(baseType.getTypeClass())) {
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@SuppressWarnings("unchecked")
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Set<PropertyDefinition> propertyDefinitions = typeDefinition.getProperties();
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if(Resource.class.isAssignableFrom(baseType.getTypeClass())) {
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if(propertyDefinitions != null && propertyDefinitions.size() > 0) {
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throw new SchemaCreationException("A Resource cannot contains any properties.");
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}
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} else {
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for(PropertyDefinition propertyDefinition : typeDefinition.getProperties()) {
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for(PropertyDefinition propertyDefinition : propertyDefinitions) {
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OType oType = OType.getById(propertyDefinition.getType().byteValue());
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/*
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* Types update is not allowed,
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* hence bug https://github.com/orientechnologies/orientdb/issues/7354 cannot occur
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* Excluding the check from types used for type definition
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*
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*/
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if(!typeDefinitionTypes.contains(typeDefinition.getName())) {
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switch(oType) {
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case EMBEDDEDLIST:
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throw new UnsupportedDataTypeException(oType.name()
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throw new UnsupportedDataTypeException(Type.OType.PROPERTYLIST
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+ " support is currently disabled due to OrientDB bug see https://github.com/orientechnologies/orientdb/issues/7354");
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case EMBEDDEDSET:
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throw new UnsupportedDataTypeException(oType.name()
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throw new UnsupportedDataTypeException(Type.OType.PROPERTYSET
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+ " support is currently disabled due to OrientDB bug see https://github.com/orientechnologies/orientdb/issues/7354");
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default:
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break;
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}
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}
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OProperty op = oClass.createProperty(propertyDefinition.getName(), oType);
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op.setDescription(propertyDefinition.getDescription());
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@ -342,6 +410,7 @@ public class SchemaManagementImpl implements SchemaManagement {
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}
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}
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@SuppressWarnings("unchecked")
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protected <ISM extends ISManageable> String getSchema(String type, boolean includeSubtypes) throws SchemaNotFoundException, SchemaException {
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ODatabaseSession oDatabaseSession = null;
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try {
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@ -49,15 +49,21 @@ public class ContextTest {
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}
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// PARENT_DEFAULT_TEST_SCOPE = "/pred4s"
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// DEFAULT_TEST_SCOPE_NAME = PARENT_DEFAULT_TEST_SCOPE + "preprod";
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// DEFAULT_TEST_SCOPE_NAME = PARENT_DEFAULT_TEST_SCOPE + "/preprod";
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// ALTERNATIVE_TEST_SCOPE = DEFAULT_TEST_SCOPE_NAME + "/preVRE";
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PARENT_DEFAULT_TEST_SCOPE = "/gcube";
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DEFAULT_TEST_SCOPE = PARENT_DEFAULT_TEST_SCOPE + "devNext";
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DEFAULT_TEST_SCOPE = PARENT_DEFAULT_TEST_SCOPE + "/devNext";
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ALTERNATIVE_TEST_SCOPE = DEFAULT_TEST_SCOPE + "/NextNext";
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DEFAULT_TEST_SCOPE_ANOTHER_USER = "lucio.lelii_" + DEFAULT_TEST_SCOPE;
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try {
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setContextByName(DEFAULT_TEST_SCOPE);
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} catch(Exception e) {
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throw new RuntimeException(e);
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}
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}
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public static String getCurrentScope(String token) throws ObjectNotFound, Exception {
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@ -34,7 +34,7 @@ public class DiscoveryTest {
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StringBuilder stringBuilder = new StringBuilder();
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stringBuilder.append("[");
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boolean first = true;
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for (Class<Resource> resource : resourceDiscovery.getDiscovered()) {
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for (Class<? extends Resource> resource : resourceDiscovery.getDiscovered()) {
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if(first) {
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first = false;
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}else {
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@ -60,7 +60,8 @@ public class SchemaManagementImplTest {
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public void getFacetSchema() throws Exception {
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String json = new SchemaManagementImpl().read(ContactFacet.NAME, false);
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logger.info(json);
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List<TypeDefinition<ContactFacet>> typeDefinitions = TypeBinder.deserializeTypeDefinitions(json);
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@SuppressWarnings("rawtypes")
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List<TypeDefinition> typeDefinitions = TypeBinder.deserializeTypeDefinitions(json);
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logger.info("{}", typeDefinitions);
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}
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