resource-registry/src/main/java/org/gcube/informationsystem/resourceregistry/queries/templates/QueryTemplateManagement.java

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package org.gcube.informationsystem.resourceregistry.queries.templates;
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import org.gcube.com.fasterxml.jackson.core.JsonProcessingException;
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import org.gcube.com.fasterxml.jackson.databind.JsonNode;
import org.gcube.com.fasterxml.jackson.databind.ObjectMapper;
import org.gcube.com.fasterxml.jackson.databind.node.ArrayNode;
import org.gcube.com.fasterxml.jackson.databind.node.ObjectNode;
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import org.gcube.informationsystem.base.reference.AccessType;
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import org.gcube.informationsystem.queries.templates.reference.entities.QueryTemplate;
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import org.gcube.informationsystem.resourceregistry.api.exceptions.AlreadyPresentException;
import org.gcube.informationsystem.resourceregistry.api.exceptions.NotFoundException;
import org.gcube.informationsystem.resourceregistry.api.exceptions.ResourceRegistryException;
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import org.gcube.informationsystem.resourceregistry.api.exceptions.queries.InvalidQueryException;
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import org.gcube.informationsystem.resourceregistry.api.exceptions.types.SchemaViolationException;
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import org.gcube.informationsystem.resourceregistry.contexts.security.QueryTemplatesSecurityContext;
import org.gcube.informationsystem.resourceregistry.contexts.security.SecurityContext;
import org.gcube.informationsystem.resourceregistry.instances.base.ElementManagementUtility;
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import org.gcube.informationsystem.resourceregistry.instances.base.entities.EntityElementManagement;
import org.gcube.informationsystem.resourceregistry.queries.json.JsonQuery;
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import org.gcube.informationsystem.resourceregistry.utils.DBUtility;
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import org.gcube.informationsystem.serialization.ElementMapper;
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import org.gcube.informationsystem.types.reference.entities.EntityType;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
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import com.arcadedb.database.Document;
import com.arcadedb.graph.Vertex;
import com.arcadedb.query.sql.executor.Result;
import com.arcadedb.query.sql.executor.ResultSet;
import com.arcadedb.remote.RemoteDatabase;
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/**
* @author Luca Frosini (ISTI - CNR)
*/
public class QueryTemplateManagement extends EntityElementManagement<QueryTemplate, EntityType> {
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private static Logger logger = LoggerFactory.getLogger(QueryTemplateManagement.class);
protected String name;
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protected JsonNode params;
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public QueryTemplateManagement() {
super(AccessType.QUERY_TEMPLATE);
this.typeName = QueryTemplate.NAME;
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}
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public QueryTemplateManagement(RemoteDatabase database) throws ResourceRegistryException {
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this();
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this.database = database;
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getWorkingContext();
}
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protected void checkERMatch() throws ResourceRegistryException {
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getDocumentType();
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}
protected void checkNameMatch() throws ResourceRegistryException {
if(jsonNode!=null && name!=null) {
String jsonName = jsonNode.get(QueryTemplate.NAME_PROPERTY).asText();
if(name.compareTo(jsonName)!=0) {
String error = String.format(
"Name provided in json (%s) differs from the one (%s) used to identify the %s instance",
jsonName, name, typeName);
throw new ResourceRegistryException(error);
}
}
}
public void setName(String name) throws ResourceRegistryException {
this.name = name;
checkNameMatch();
}
protected void checkJsonNode() throws ResourceRegistryException {
super.checkJsonNode();
checkNameMatch();
}
public String getName() {
if (name == null) {
if (element == null) {
if (jsonNode != null) {
name = jsonNode.get(QueryTemplate.NAME_PROPERTY).asText();
}
} else {
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name = element.getString(QueryTemplate.NAME_PROPERTY);
}
}
return name;
}
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@Override
protected SecurityContext getWorkingContext() throws ResourceRegistryException {
if (workingContext == null) {
workingContext = QueryTemplatesSecurityContext.getInstance();
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}
return workingContext;
}
@Override
protected JsonNode createCompleteJsonNode() throws ResourceRegistryException {
try {
JsonNode queryTemplate = serializeSelfAsJsonNode();
ObjectMapper objectMapper = new ObjectMapper();
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String templateString = element.getString(QueryTemplate.TEMPLATE_PROPERTY);
JsonNode templateJsonNode = objectMapper.readTree(templateString);
((ObjectNode) queryTemplate).replace(QueryTemplate.TEMPLATE_PROPERTY, templateJsonNode);
return queryTemplate;
}catch (ResourceRegistryException e) {
throw e;
}catch (Exception e) {
throw new ResourceRegistryException(e);
}
}
protected StringBuffer getSelectQuery() {
StringBuffer select = new StringBuffer();
select.append("SELECT FROM ");
select.append(QueryTemplate.NAME);
select.append(" WHERE ");
select.append(QueryTemplate.NAME_PROPERTY);
select.append(" = ");
select.append("\"");
select.append(getName());
select.append("\"");
return select;
}
protected void checkIfNameAlreadyExists() throws AlreadyPresentException {
StringBuffer select = getSelectQuery();
StringBuffer errorMessage = new StringBuffer();
errorMessage.append("A ");
errorMessage.append(QueryTemplate.NAME);
errorMessage.append(" with ");
errorMessage.append(this.getName());
errorMessage.append(" already exists");
logger.trace("Checking if {} -> {}", errorMessage, select);
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ResultSet resultSet = database.command("sql", select.toString());
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if (resultSet != null) {
try {
if(resultSet.hasNext()) {
throw new AlreadyPresentException(errorMessage.toString());
}
}finally {
resultSet.close();
}
}
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}
protected void tryTemplate() throws Exception {
QueryTemplate queryTemplate = ElementMapper.unmarshal(QueryTemplate.class, jsonNode.toString());
JsonNode jsonQueryNode = queryTemplate.getJsonQuery();
JsonQuery jsonQuery = new JsonQuery();
jsonQuery.setJsonQuery(jsonQueryNode);
try {
jsonQuery.query();
}catch (ResourceRegistryException e) {
throw e;
}catch (Exception e) {
throw new ResourceRegistryException(e);
}
}
@Override
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public Vertex retrieveElement() throws NotFoundException, ResourceRegistryException {
try {
StringBuffer select = getSelectQuery();
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ResultSet resultSet = database.query("sql", select.toString());
if(resultSet == null || !resultSet.hasNext()) {
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if(resultSet!=null) {
resultSet.close();
}
throw new NotFoundException("Error retrieving " + QueryTemplate.NAME + " with name " + getName());
}
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Result result = resultSet.next();
Vertex queryTemplate = ElementManagementUtility.getElementFromOptional(result.getVertex());
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logger.trace("{} representing vertex is {}", QueryTemplate.NAME, DBUtility.getAsStringForLogging(queryTemplate));
if(resultSet.hasNext()) {
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resultSet.close();
throw new NotFoundException("Found more than one " + QueryTemplate.NAME + " with name " + name + ". This should not occur, please contact the administrator");
}
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resultSet.close();
return queryTemplate;
} catch(NotFoundException e) {
throw getSpecificNotFoundException(e);
} catch(ResourceRegistryException e) {
throw e;
} catch(Exception e) {
throw new ResourceRegistryException(e);
}
}
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@Override
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protected Vertex reallyCreate() throws AlreadyPresentException, InvalidQueryException, ResourceRegistryException {
try {
checkIfNameAlreadyExists();
tryTemplate();
createVertex();
return getElement();
} catch(ResourceRegistryException e) {
throw e;
} catch(Exception e) {
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logger.trace("Error while creating {} for {} ({}) using {}", Vertex.class.getSimpleName(),
accessType.getName(), typeName, jsonNode, e);
throw new ResourceRegistryException("Error Creating " + typeName + " with " + jsonNode, e.getCause());
}
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}
@Override
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protected Vertex reallyUpdate() throws NotFoundException, ResourceRegistryException {
try {
tryTemplate();
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Vertex queryTemplate = getElement();
queryTemplate = (Vertex) updateProperties(documentType, queryTemplate, jsonNode, ignoreKeys, ignoreStartWithKeys);
return getElement();
} catch(ResourceRegistryException e) {
throw e;
} catch(Exception e) {
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logger.trace("Error while creating {} for {} ({}) using {}", Vertex.class.getSimpleName(),
accessType.getName(), typeName, jsonNode, e);
throw new ResourceRegistryException("Error Creating " + typeName + " with " + jsonNode, e.getCause());
}
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}
@Override
protected void reallyDelete() throws NotFoundException, ResourceRegistryException {
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logger.debug("Going to delete {} with name {}", accessType.getName(), name);
getElement().delete();
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}
@Override
protected NotFoundException getSpecificNotFoundException(NotFoundException e) {
return new NotFoundException(e);
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}
@Override
protected AlreadyPresentException getSpecificAlreadyPresentException(String message) {
return new AlreadyPresentException(message);
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}
@Override
public String reallyGetAll(boolean polymorphic) throws ResourceRegistryException {
ObjectMapper objectMapper = new ObjectMapper();
ArrayNode arrayNode = objectMapper.createArrayNode();
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Iterable<Document> iterable = database.browseClass(typeName, polymorphic);
for (Document vertex : iterable) {
QueryTemplateManagement queryTemplateManagement = new QueryTemplateManagement();
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queryTemplateManagement.setElement((Vertex) vertex);
try {
JsonNode jsonObject = queryTemplateManagement.serializeAsJsonNode();
arrayNode.add(jsonObject);
} catch (ResourceRegistryException e) {
logger.error("Unable to correctly serialize {}. It will be excluded from results. {}",
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vertex.toString(), DBUtility.SHOULD_NOT_OCCUR_ERROR_MESSAGE);
}
}
try {
return objectMapper.writeValueAsString(arrayNode);
} catch (JsonProcessingException e) {
throw new ResourceRegistryException(e);
}
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}
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public void setParams(String params) throws ResourceRegistryException {
try {
if(params!=null && params.compareTo("")!=0) {
ObjectMapper objectMapper = new ObjectMapper();
JsonNode jsonNode = objectMapper.readTree(params);
setParams(jsonNode);
}
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} catch (ResourceRegistryException e) {
throw e;
} catch (Exception e) {
throw new ResourceRegistryException(e);
}
}
public void setParams(JsonNode params) throws ResourceRegistryException {
this.params = params;
}
/**
* Run the query after having replaced query parameter with the provided values
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* @return the result as JSON string
* @throws Exception
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*/
public String run() throws ResourceRegistryException {
try {
String read = read();
QueryTemplate queryTemplate = ElementMapper.unmarshal(QueryTemplate.class, read);
JsonNode query = null;
if(params!=null) {
query = queryTemplate.getJsonQuery(params);
}else {
query = queryTemplate.getJsonQuery();
}
JsonQuery jsonQuery = new JsonQuery();
jsonQuery.setJsonQuery(query);
return jsonQuery.query();
} catch (ResourceRegistryException e) {
throw e;
} catch (Exception e) {
throw new ResourceRegistryException(e);
}
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}
public void sanityCheck() throws SchemaViolationException, ResourceRegistryException {
// No sanity check required
}
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}