New list of packages, required by SRA+

install2r-packages.txt

@@ -1,9 +1,12 @@
+BH
 Benchmarking
 DBI
 DEoptimR
 DT
 DescTools
+FishLife
 GA
+HDInterval
 Hmisc
 LaF
 MASS
@@ -15,66 +18,113 @@ R2HTML
 R2OpenBUGS
 R2WinBUGS
 R2jags
+R6
+RColorBrewer
 RCurl
 RJSONIO
 RPostgreSQL
 RPostgres
+RSQLite
 Rcpp
 RcppEigen
+RcppParallel
+RcppRoll
 Rserve
+StanHeaders
 TH.data
 TMB
+TMBhelper
+ThorsonUtilities
 TropFishR
 VSURF
 XML
 abind
 animation
+arkdb
+arrayhelpers
+askpass
+assertthat
+backports
 base64enc
+bayesplot
 baysemix
+bit
+bit64
 bitops
+blob
+brio
+bslib
+cachem
 calibrate
+callr
 caret
+checkmate
 chron
 cleangeo
+cli
+clipr
 coda
 colorspace
+colourpicker
+commonmark
 compiler
 copula
 corrplot
 cowplot
+cpp11
+crayon
+crosstalk
 curl
 d4storagehub4R
 data.table
 datasets
+dbplyr
+desc
 devtools
 dichromat
+diffobj
 digest
 diptest
 dismo
 distr
+distributional
 doBy
 doMC
 doParallel
 dplyr
+dygraphs
 earth
 ellipse
+ellipsis
 evaluate
+fansi
+farver
+fastmap
 fdth
 fields
 fishmethods
 flexmix
 flr/FLash
 flr/FLash2
+fontawesome
 foreach
 fpc
+fs
 gam
 gdata
+generics
 geojsonio
 geometa
 geonapi
 geosapi
 geosphere
+ggdist
 ggplot2
+ggridges
+gh
+gitcreds
+globals
+glue
 googleVis
 gplots
 grDevices
@@ -84,20 +134,33 @@ gridExtra
 gridGraphics
 gsl
 gtable
+gtools
+hardhat
 hdf5r
 highlight
+hms
 htmltools
 htmlwidgets
+httpuv
 httr
 igraph
+ini
+inline
+isoband
+iterators
+jquerylib
 jsonlite
 kernlab
 knitr
 kobe
 labeling
+later
 lattice
+lazyeval
+lifecycle
 lme4
 locfit
+loo
 lowess
 lubridate
 lwgeom
@@ -107,6 +170,8 @@ mapdata
 mapplots
 maps
 maptools
+markdown
+matrixStats
 maxent
 mc2d
 mclust
@@ -114,35 +179,58 @@ mefa4
 memoise
 methods
 mgcv
+mime
 miniCRAN
+miniUI
 minqa
 mnormt
 modeltools
 msm
 multcomp
 munsell
+mvtnorm
 ncdf4
 nloptr
 nnet
 numDeriv
+openssl
 openxlsx
 osmdata
 ows4R
 parallel
+parsnip
+patchwork
+pillar
+pkgbuild
+pkgconfig
+pkgload
+plogr
 plotly
 plotrix
 plyr
+posterior
 prabclus
+praise
+prettyunits
+processx
+progress
+promises
+ps
+purrr
 r4ss
 rDEA
 rJava
 random
+ranger
+rappdirs
 raster
 rasterVis
 readr
 readxl
+rematch2
 reshape
 reshape2
+rfishbase
 rgdal
 rgeos
 rgl
@@ -152,42 +240,72 @@ rmarkdown
 robis
 robustbase
 rpart
+rprojroot
 rsdmx
 rstan
+rstanarm
+rstantools
+rstudioapi
 runjags
 rworldmap
 sandwich
+sass
 scales
 sf
+shape
 shapefiles
 shiny
+shinyjs
+shinystan
+shinythemes
 smatr
 sn
 snow
 snpar
 sodium
+sourcetools
 sp
 spam
 splines
 sqldf
 stats
 stats4
+stringi
 stringr
 survival
+svUnit
 svglite
+sys
 tclust
+tensorA
+testthat
+threejs
+tibble
+tidybayes
 tidyr
+tidyselect
 tidyverse
+tmbstan
 tools
 triangle
 trimcluster
+truncnorm
+tzdb
 urltools
+utf8
 utils
+vctrs
 viridis
+viridisLite
+vroom
+waldo
 whisker
 wicket
 withr
 writexl
+xfun
 xtable
 xts
+yaml
 zen4R
+zoo