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target
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target
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.classpath
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.classpath
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.project
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.project
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/.DS_Store
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/org.eclipse.jdt.core.prefs
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@ -1,4 +1,6 @@
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eclipse.preferences.version=1
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eclipse.preferences.version=1
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||||||
encoding//src/main/java=UTF-8
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encoding//src/main/java=UTF-8
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||||||
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encoding//src/main/resources=UTF-8
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encoding//src/test/java=UTF-8
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encoding//src/test/java=UTF-8
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encoding//src/test/resources=UTF-8
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encoding/<project>=UTF-8
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encoding/<project>=UTF-8
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@ -1,2 +0,0 @@
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||||||
eclipse.preferences.version=1
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||||||
org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
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@ -1,12 +1,23 @@
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||||||
<?xml version="1.0" encoding="UTF-8"?><project-modules id="moduleCoreId" project-version="1.5.0">
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<?xml version="1.0" encoding="UTF-8"?><project-modules id="moduleCoreId" project-version="1.5.0">
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<wb-module deploy-name="grsf-publisher-ws">
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<wb-module deploy-name="grsf-publisher-ws-1.12.1-SNAPSHOT">
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||||||
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<wb-resource deploy-path="/" source-path="/target/m2e-wtp/web-resources"/>
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<wb-resource deploy-path="/" source-path="/target/m2e-wtp/web-resources"/>
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||||||
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<wb-resource deploy-path="/" source-path="/src/main/webapp" tag="defaultRootSource"/>
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<wb-resource deploy-path="/" source-path="/src/main/webapp" tag="defaultRootSource"/>
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||||||
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||||||
<wb-resource deploy-path="/WEB-INF/classes" source-path="/src/main/java"/>
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<wb-resource deploy-path="/WEB-INF/classes" source-path="/src/main/java"/>
|
||||||
<dependent-module archiveName="grsf-common-library-1.0.3-SNAPSHOT.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/grsf-common-library/grsf-common-library">
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<dependent-module archiveName="storagehub-model-1.1.0.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/storagehub-model/storagehub-model">
|
||||||
<dependency-type>uses</dependency-type>
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<dependency-type>uses</dependency-type>
|
||||||
</dependent-module>
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</dependent-module>
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||||||
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<dependent-module archiveName="common-gcube-calls-1.3.1-SNAPSHOT.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/common-gcube-calls/common-gcube-calls">
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||||||
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<dependency-type>uses</dependency-type>
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||||||
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</dependent-module>
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||||||
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||||||
<property name="context-root" value="grsf-publisher-ws"/>
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<property name="context-root" value="grsf-publisher-ws"/>
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||||||
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||||||
<property name="java-output-path" value="/grsf-publisher-ws/target/classes"/>
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<property name="java-output-path" value="/grsf-publisher-ws/target/classes"/>
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||||||
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</wb-module>
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</wb-module>
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||||||
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||||||
</project-modules>
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</project-modules>
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||||||
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@ -0,0 +1,139 @@
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||||||
|
# Changelog
|
||||||
|
|
||||||
|
All notable changes to this project will be documented in this file.
|
||||||
|
This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
|
||||||
|
|
||||||
|
## [v1.13.3]
|
||||||
|
|
||||||
|
- Adding support for "FAO SDG 14.4.1 Questionnaire" source [#23670]
|
||||||
|
|
||||||
|
|
||||||
|
## [v1.13.2]
|
||||||
|
|
||||||
|
- Migrated request to social-service-client [#23679]
|
||||||
|
- Added "Assessment Methods" as Group [#23409]
|
||||||
|
|
||||||
|
|
||||||
|
## [v1.13.1]
|
||||||
|
|
||||||
|
- Aligned code and wiki to the new requirements [#23167]
|
||||||
|
- Changed group assign strategy [#23211] [#23215]
|
||||||
|
- Tag are added also to legacy records [#23216]
|
||||||
|
- Fixed code which generated groups id from name [#23215]
|
||||||
|
|
||||||
|
|
||||||
|
## [v1.13.0]
|
||||||
|
|
||||||
|
### Added
|
||||||
|
|
||||||
|
- Added support to not include in records time dependant metadata [#21995]
|
||||||
|
|
||||||
|
### Changed
|
||||||
|
|
||||||
|
- Switched dependency management to gcube-bom 2.0.0
|
||||||
|
- Migrated code to storagehub [#21432]
|
||||||
|
|
||||||
|
|
||||||
|
## [v1.12.0] - 2020-06-19
|
||||||
|
|
||||||
|
### Added
|
||||||
|
|
||||||
|
**Features**
|
||||||
|
|
||||||
|
- [#19166] Added support for GRSF_pre VRE with the behaviour of GRSF Admin
|
||||||
|
|
||||||
|
## [v1.11.0] - 2020-03-30
|
||||||
|
|
||||||
|
### Changed
|
||||||
|
|
||||||
|
- [#18293] Traceability flag is assigned only to Fishery records
|
||||||
|
|
||||||
|
## [v1.10.0] - 2019-11-11
|
||||||
|
|
||||||
|
### Changed
|
||||||
|
|
||||||
|
- [#17965] Tags longer than 100 characters are truncated instead of skipped
|
||||||
|
|
||||||
|
## [v1.9.0] - 2019-05-27
|
||||||
|
|
||||||
|
### Changed
|
||||||
|
|
||||||
|
- [#13347] refers_to can be null while publishing legacy records
|
||||||
|
|
||||||
|
- [#12421] Removed the non-ascii clean from extra fields
|
||||||
|
|
||||||
|
- [#12421] Properly supporting UTF-8 characters
|
||||||
|
|
||||||
|
- [#16395] Title is updated according to Stock/Fishery Name
|
||||||
|
|
||||||
|
## [v1.8.0] - 2019-02-26
|
||||||
|
|
||||||
|
### Changed
|
||||||
|
|
||||||
|
- [#12861] The sources in GRSF VRE are calculated using 'database_sources' field
|
||||||
|
|
||||||
|
## [v1.7.0] - 2018-10-10
|
||||||
|
|
||||||
|
### Changed
|
||||||
|
|
||||||
|
- [#12510] Fixed pom to exclude libraries already provided by the container
|
||||||
|
|
||||||
|
## [v1.6.0] - 2018-07-18
|
||||||
|
|
||||||
|
### Changed
|
||||||
|
|
||||||
|
- [#11464] Added biomass timeseries support to stock data
|
||||||
|
- [#11749] Added 'With Similarities'-'No Similarities' tag to GRSF Records
|
||||||
|
- [#11748] Added Tag for 'Fishing Gears' and 'Flag State' fields
|
||||||
|
- [#11766] Added 'Connected'-'Not Connected' tag to GRSF Records
|
||||||
|
- [#11767] Added group for SDG flag
|
||||||
|
- [#11811] Added citation field
|
||||||
|
- [#11832] Added sub-groups support for available time series related to GRSF Type "Assessment Unit"
|
||||||
|
- [#11967] Added Biomass group
|
||||||
|
- [#11968] Changed 'State and trend of Marine Resource' to 'State and Trend'
|
||||||
|
- [#11969] Changed 'Scientific advice' to 'Scientific Advice'
|
||||||
|
|
||||||
|
## [v1.5.0] - 2017-01-10
|
||||||
|
|
||||||
|
### Changed
|
||||||
|
|
||||||
|
- Model enhancements
|
||||||
|
|
||||||
|
## [v1.4.0] - 2017-11-02
|
||||||
|
|
||||||
|
### Changed
|
||||||
|
|
||||||
|
- Some fixes and improvements: added a common library between service and management widget
|
||||||
|
|
||||||
|
## [v1.3.0] - 2017-08-01
|
||||||
|
|
||||||
|
### Changed
|
||||||
|
|
||||||
|
- Model upgrade
|
||||||
|
|
||||||
|
## [v1.2.0] - 2017-07-01
|
||||||
|
|
||||||
|
### Changed
|
||||||
|
|
||||||
|
- [#8719] Model changed
|
||||||
|
|
||||||
|
## [v1.1.2] - 2017-05-15
|
||||||
|
|
||||||
|
- [#8719] Updates for ticket
|
||||||
|
- Minor fixes
|
||||||
|
|
||||||
|
## [v1.1.1] - 2017-04-02
|
||||||
|
|
||||||
|
- Minor fixes
|
||||||
|
|
||||||
|
## [v1.1.0] - 2017-02-28
|
||||||
|
|
||||||
|
- Model update
|
||||||
|
|
||||||
|
## [v1.0.1] - 2017-02-10
|
||||||
|
|
||||||
|
- Minor fixes
|
||||||
|
|
||||||
|
## [v1.0.0] - 2016-12-10
|
||||||
|
|
||||||
|
- First Release
|
|
@ -0,0 +1,312 @@
|
||||||
|
# European Union Public Licence V. 1.1
|
||||||
|
|
||||||
|
|
||||||
|
EUPL © the European Community 2007
|
||||||
|
|
||||||
|
|
||||||
|
This European Union Public Licence (the “EUPL”) applies to the Work or Software
|
||||||
|
(as defined below) which is provided under the terms of this Licence. Any use of
|
||||||
|
the Work, other than as authorised under this Licence is prohibited (to the
|
||||||
|
extent such use is covered by a right of the copyright holder of the Work).
|
||||||
|
|
||||||
|
The Original Work is provided under the terms of this Licence when the Licensor
|
||||||
|
(as defined below) has placed the following notice immediately following the
|
||||||
|
copyright notice for the Original Work:
|
||||||
|
|
||||||
|
Licensed under the EUPL V.1.1
|
||||||
|
|
||||||
|
or has expressed by any other mean his willingness to license under the EUPL.
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
## 1. Definitions
|
||||||
|
|
||||||
|
In this Licence, the following terms have the following meaning:
|
||||||
|
|
||||||
|
- The Licence: this Licence.
|
||||||
|
|
||||||
|
- The Original Work or the Software: the software distributed and/or
|
||||||
|
communicated by the Licensor under this Licence, available as Source Code and
|
||||||
|
also as Executable Code as the case may be.
|
||||||
|
|
||||||
|
- Derivative Works: the works or software that could be created by the Licensee,
|
||||||
|
based upon the Original Work or modifications thereof. This Licence does not
|
||||||
|
define the extent of modification or dependence on the Original Work required
|
||||||
|
in order to classify a work as a Derivative Work; this extent is determined by
|
||||||
|
copyright law applicable in the country mentioned in Article 15.
|
||||||
|
|
||||||
|
- The Work: the Original Work and/or its Derivative Works.
|
||||||
|
|
||||||
|
- The Source Code: the human-readable form of the Work which is the most
|
||||||
|
convenient for people to study and modify.
|
||||||
|
|
||||||
|
- The Executable Code: any code which has generally been compiled and which is
|
||||||
|
meant to be interpreted by a computer as a program.
|
||||||
|
|
||||||
|
- The Licensor: the natural or legal person that distributes and/or communicates
|
||||||
|
the Work under the Licence.
|
||||||
|
|
||||||
|
- Contributor(s): any natural or legal person who modifies the Work under the
|
||||||
|
Licence, or otherwise contributes to the creation of a Derivative Work.
|
||||||
|
|
||||||
|
- The Licensee or “You”: any natural or legal person who makes any usage of the
|
||||||
|
Software under the terms of the Licence.
|
||||||
|
|
||||||
|
- Distribution and/or Communication: any act of selling, giving, lending,
|
||||||
|
renting, distributing, communicating, transmitting, or otherwise making
|
||||||
|
available, on-line or off-line, copies of the Work or providing access to its
|
||||||
|
essential functionalities at the disposal of any other natural or legal
|
||||||
|
person.
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
## 2. Scope of the rights granted by the Licence
|
||||||
|
|
||||||
|
The Licensor hereby grants You a world-wide, royalty-free, non-exclusive,
|
||||||
|
sub-licensable licence to do the following, for the duration of copyright vested
|
||||||
|
in the Original Work:
|
||||||
|
|
||||||
|
- use the Work in any circumstance and for all usage, reproduce the Work, modify
|
||||||
|
- the Original Work, and make Derivative Works based upon the Work, communicate
|
||||||
|
- to the public, including the right to make available or display the Work or
|
||||||
|
- copies thereof to the public and perform publicly, as the case may be, the
|
||||||
|
- Work, distribute the Work or copies thereof, lend and rent the Work or copies
|
||||||
|
- thereof, sub-license rights in the Work or copies thereof.
|
||||||
|
|
||||||
|
Those rights can be exercised on any media, supports and formats, whether now
|
||||||
|
known or later invented, as far as the applicable law permits so.
|
||||||
|
|
||||||
|
In the countries where moral rights apply, the Licensor waives his right to
|
||||||
|
exercise his moral right to the extent allowed by law in order to make effective
|
||||||
|
the licence of the economic rights here above listed.
|
||||||
|
|
||||||
|
The Licensor grants to the Licensee royalty-free, non exclusive usage rights to
|
||||||
|
any patents held by the Licensor, to the extent necessary to make use of the
|
||||||
|
rights granted on the Work under this Licence.
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
## 3. Communication of the Source Code
|
||||||
|
|
||||||
|
The Licensor may provide the Work either in its Source Code form, or as
|
||||||
|
Executable Code. If the Work is provided as Executable Code, the Licensor
|
||||||
|
provides in addition a machine-readable copy of the Source Code of the Work
|
||||||
|
along with each copy of the Work that the Licensor distributes or indicates, in
|
||||||
|
a notice following the copyright notice attached to the Work, a repository where
|
||||||
|
the Source Code is easily and freely accessible for as long as the Licensor
|
||||||
|
continues to distribute and/or communicate the Work.
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
## 4. Limitations on copyright
|
||||||
|
|
||||||
|
Nothing in this Licence is intended to deprive the Licensee of the benefits from
|
||||||
|
any exception or limitation to the exclusive rights of the rights owners in the
|
||||||
|
Original Work or Software, of the exhaustion of those rights or of other
|
||||||
|
applicable limitations thereto.
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
## 5. Obligations of the Licensee
|
||||||
|
|
||||||
|
The grant of the rights mentioned above is subject to some restrictions and
|
||||||
|
obligations imposed on the Licensee. Those obligations are the following:
|
||||||
|
|
||||||
|
Attribution right: the Licensee shall keep intact all copyright, patent or
|
||||||
|
trademarks notices and all notices that refer to the Licence and to the
|
||||||
|
disclaimer of warranties. The Licensee must include a copy of such notices and a
|
||||||
|
copy of the Licence with every copy of the Work he/she distributes and/or
|
||||||
|
communicates. The Licensee must cause any Derivative Work to carry prominent
|
||||||
|
notices stating that the Work has been modified and the date of modification.
|
||||||
|
|
||||||
|
Copyleft clause: If the Licensee distributes and/or communicates copies of the
|
||||||
|
Original Works or Derivative Works based upon the Original Work, this
|
||||||
|
Distribution and/or Communication will be done under the terms of this Licence
|
||||||
|
or of a later version of this Licence unless the Original Work is expressly
|
||||||
|
distributed only under this version of the Licence. The Licensee (becoming
|
||||||
|
Licensor) cannot offer or impose any additional terms or conditions on the Work
|
||||||
|
or Derivative Work that alter or restrict the terms of the Licence.
|
||||||
|
|
||||||
|
Compatibility clause: If the Licensee Distributes and/or Communicates Derivative
|
||||||
|
Works or copies thereof based upon both the Original Work and another work
|
||||||
|
licensed under a Compatible Licence, this Distribution and/or Communication can
|
||||||
|
be done under the terms of this Compatible Licence. For the sake of this clause,
|
||||||
|
“Compatible Licence” refers to the licences listed in the appendix attached to
|
||||||
|
this Licence. Should the Licensee’s obligations under the Compatible Licence
|
||||||
|
conflict with his/her obligations under this Licence, the obligations of the
|
||||||
|
Compatible Licence shall prevail.
|
||||||
|
|
||||||
|
Provision of Source Code: When distributing and/or communicating copies of the
|
||||||
|
Work, the Licensee will provide a machine-readable copy of the Source Code or
|
||||||
|
indicate a repository where this Source will be easily and freely available for
|
||||||
|
as long as the Licensee continues to distribute and/or communicate the Work.
|
||||||
|
|
||||||
|
Legal Protection: This Licence does not grant permission to use the trade names,
|
||||||
|
trademarks, service marks, or names of the Licensor, except as required for
|
||||||
|
reasonable and customary use in describing the origin of the Work and
|
||||||
|
reproducing the content of the copyright notice.
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
## 6. Chain of Authorship
|
||||||
|
|
||||||
|
The original Licensor warrants that the copyright in the Original Work granted
|
||||||
|
hereunder is owned by him/her or licensed to him/her and that he/she has the
|
||||||
|
power and authority to grant the Licence.
|
||||||
|
|
||||||
|
Each Contributor warrants that the copyright in the modifications he/she brings
|
||||||
|
to the Work are owned by him/her or licensed to him/her and that he/she has the
|
||||||
|
power and authority to grant the Licence.
|
||||||
|
|
||||||
|
Each time You accept the Licence, the original Licensor and subsequent
|
||||||
|
Contributors grant You a licence to their contributions to the Work, under the
|
||||||
|
terms of this Licence.
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
## 7. Disclaimer of Warranty
|
||||||
|
|
||||||
|
The Work is a work in progress, which is continuously improved by numerous
|
||||||
|
contributors. It is not a finished work and may therefore contain defects or
|
||||||
|
“bugs” inherent to this type of software development.
|
||||||
|
|
||||||
|
For the above reason, the Work is provided under the Licence on an “as is” basis
|
||||||
|
and without warranties of any kind concerning the Work, including without
|
||||||
|
limitation merchantability, fitness for a particular purpose, absence of defects
|
||||||
|
or errors, accuracy, non-infringement of intellectual property rights other than
|
||||||
|
copyright as stated in Article 6 of this Licence.
|
||||||
|
|
||||||
|
This disclaimer of warranty is an essential part of the Licence and a condition
|
||||||
|
for the grant of any rights to the Work.
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
## 8. Disclaimer of Liability
|
||||||
|
|
||||||
|
Except in the cases of wilful misconduct or damages directly caused to natural
|
||||||
|
persons, the Licensor will in no event be liable for any direct or indirect,
|
||||||
|
material or moral, damages of any kind, arising out of the Licence or of the use
|
||||||
|
of the Work, including without limitation, damages for loss of goodwill, work
|
||||||
|
stoppage, computer failure or malfunction, loss of data or any commercial
|
||||||
|
damage, even if the Licensor has been advised of the possibility of such
|
||||||
|
damage. However, the Licensor will be liable under statutory product liability
|
||||||
|
laws as far such laws apply to the Work.
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
## 9. Additional agreements
|
||||||
|
|
||||||
|
While distributing the Original Work or Derivative Works, You may choose to
|
||||||
|
conclude an additional agreement to offer, and charge a fee for, acceptance of
|
||||||
|
support, warranty, indemnity, or other liability obligations and/or services
|
||||||
|
consistent with this Licence. However, in accepting such obligations, You may
|
||||||
|
act only on your own behalf and on your sole responsibility, not on behalf of
|
||||||
|
the original Licensor or any other Contributor, and only if You agree to
|
||||||
|
indemnify, defend, and hold each Contributor harmless for any liability incurred
|
||||||
|
by, or claims asserted against such Contributor by the fact You have accepted
|
||||||
|
any such warranty or additional liability.
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
## 10. Acceptance of the Licence
|
||||||
|
|
||||||
|
The provisions of this Licence can be accepted by clicking on an icon “I agree”
|
||||||
|
placed under the bottom of a window displaying the text of this Licence or by
|
||||||
|
affirming consent in any other similar way, in accordance with the rules of
|
||||||
|
applicable law. Clicking on that icon indicates your clear and irrevocable
|
||||||
|
acceptance of this Licence and all of its terms and conditions.
|
||||||
|
|
||||||
|
Similarly, you irrevocably accept this Licence and all of its terms and
|
||||||
|
conditions by exercising any rights granted to You by Article 2 of this Licence,
|
||||||
|
such as the use of the Work, the creation by You of a Derivative Work or the
|
||||||
|
Distribution and/or Communication by You of the Work or copies thereof.
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
## 11. Information to the public
|
||||||
|
|
||||||
|
In case of any Distribution and/or Communication of the Work by means of
|
||||||
|
electronic communication by You (for example, by offering to download the Work
|
||||||
|
from a remote location) the distribution channel or media (for example, a
|
||||||
|
website) must at least provide to the public the information requested by the
|
||||||
|
applicable law regarding the Licensor, the Licence and the way it may be
|
||||||
|
accessible, concluded, stored and reproduced by the Licensee.
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
## 12. Termination of the Licence
|
||||||
|
|
||||||
|
The Licence and the rights granted hereunder will terminate automatically upon
|
||||||
|
any breach by the Licensee of the terms of the Licence.
|
||||||
|
|
||||||
|
Such a termination will not terminate the licences of any person who has
|
||||||
|
received the Work from the Licensee under the Licence, provided such persons
|
||||||
|
remain in full compliance with the Licence.
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
## 13. Miscellaneous
|
||||||
|
|
||||||
|
Without prejudice of Article 9 above, the Licence represents the complete
|
||||||
|
agreement between the Parties as to the Work licensed hereunder.
|
||||||
|
|
||||||
|
If any provision of the Licence is invalid or unenforceable under applicable
|
||||||
|
law, this will not affect the validity or enforceability of the Licence as a
|
||||||
|
whole. Such provision will be construed and/or reformed so as necessary to make
|
||||||
|
it valid and enforceable.
|
||||||
|
|
||||||
|
The European Commission may publish other linguistic versions and/or new
|
||||||
|
versions of this Licence, so far this is required and reasonable, without
|
||||||
|
reducing the scope of the rights granted by the Licence. New versions of the
|
||||||
|
Licence will be published with a unique version number.
|
||||||
|
|
||||||
|
All linguistic versions of this Licence, approved by the European Commission,
|
||||||
|
have identical value. Parties can take advantage of the linguistic version of
|
||||||
|
their choice.
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
## 14. Jurisdiction
|
||||||
|
|
||||||
|
Any litigation resulting from the interpretation of this License, arising
|
||||||
|
between the European Commission, as a Licensor, and any Licensee, will be
|
||||||
|
subject to the jurisdiction of the Court of Justice of the European Communities,
|
||||||
|
as laid down in article 238 of the Treaty establishing the European Community.
|
||||||
|
|
||||||
|
Any litigation arising between Parties, other than the European Commission, and
|
||||||
|
resulting from the interpretation of this License, will be subject to the
|
||||||
|
exclusive jurisdiction of the competent court where the Licensor resides or
|
||||||
|
conducts its primary business.
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
## 15. Applicable Law
|
||||||
|
|
||||||
|
This Licence shall be governed by the law of the European Union country where
|
||||||
|
the Licensor resides or has his registered office.
|
||||||
|
|
||||||
|
This licence shall be governed by the Belgian law if:
|
||||||
|
|
||||||
|
- a litigation arises between the European Commission, as a Licensor, and any
|
||||||
|
- Licensee; the Licensor, other than the European Commission, has no residence
|
||||||
|
- or registered office inside a European Union country.
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
## Appendix
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
|
“Compatible Licences” according to article 5 EUPL are:
|
||||||
|
|
||||||
|
|
||||||
|
- GNU General Public License (GNU GPL) v. 2
|
||||||
|
|
||||||
|
- Open Software License (OSL) v. 2.1, v. 3.0
|
||||||
|
|
||||||
|
- Common Public License v. 1.0
|
||||||
|
|
||||||
|
- Eclipse Public License v. 1.0
|
||||||
|
|
||||||
|
- Cecill v. 2.0
|
||||||
|
|
|
@ -0,0 +1,69 @@
|
||||||
|
# GRSF Publisher Service
|
||||||
|
|
||||||
|
This service allows any client to publish on GRSF Catalogue.
|
||||||
|
|
||||||
|
## Built With
|
||||||
|
|
||||||
|
* [OpenJDK](https://openjdk.java.net/) - The JDK used
|
||||||
|
* [Maven](https://maven.apache.org/) - Dependency Management
|
||||||
|
|
||||||
|
## Documentation
|
||||||
|
|
||||||
|
[GRSF Publisher Service](https://wiki.gcube-system.org/gcube/GCube_Data_Catalogue_for_GRSF)
|
||||||
|
|
||||||
|
## Change log
|
||||||
|
|
||||||
|
See [Releases](https://code-repo.d4science.org/gCubeSystem/grsf-publisher-ws/releases).
|
||||||
|
|
||||||
|
## Authors
|
||||||
|
|
||||||
|
* **Luca Frosini** ([ORCID](https://orcid.org/0000-0003-3183-2291)) - [ISTI-CNR Infrascience Group](http://nemis.isti.cnr.it/groups/infrascience)
|
||||||
|
|
||||||
|
## How to Cite this Software
|
||||||
|
|
||||||
|
Tell people how to cite this software.
|
||||||
|
* Cite an associated paper?
|
||||||
|
* Use a specific BibTeX entry for the software?
|
||||||
|
|
||||||
|
|
||||||
|
@Manual{,
|
||||||
|
title = {GRSF Publisher Service},
|
||||||
|
author = {{Perciante, Costantino}, {Frosini, Luca}},
|
||||||
|
organization = {ISTI - CNR},
|
||||||
|
address = {Pisa, Italy},
|
||||||
|
year = 2019,
|
||||||
|
url = {http://www.gcube-system.org/}
|
||||||
|
}
|
||||||
|
|
||||||
|
## License
|
||||||
|
|
||||||
|
This project is licensed under the EUPL V.1.1 License - see the [LICENSE.md](LICENSE.md) file for details.
|
||||||
|
|
||||||
|
|
||||||
|
## About the gCube Framework
|
||||||
|
This software is part of the [gCubeFramework](https://www.gcube-system.org/ "gCubeFramework"): an
|
||||||
|
open-source software toolkit used for building and operating Hybrid Data
|
||||||
|
Infrastructures enabling the dynamic deployment of Virtual Research Environments
|
||||||
|
by favouring the realisation of reuse oriented policies.
|
||||||
|
|
||||||
|
The projects leading to this software have received funding from a series of European Union programmes including:
|
||||||
|
|
||||||
|
- the Sixth Framework Programme for Research and Technological Development
|
||||||
|
- DILIGENT (grant no. 004260).
|
||||||
|
- the Seventh Framework Programme for research, technological development and demonstration
|
||||||
|
- D4Science (grant no. 212488);
|
||||||
|
- D4Science-II (grant no.239019);
|
||||||
|
- ENVRI (grant no. 283465);
|
||||||
|
- iMarine(grant no. 283644);
|
||||||
|
- EUBrazilOpenBio (grant no. 288754).
|
||||||
|
- the H2020 research and innovation programme
|
||||||
|
- SoBigData (grant no. 654024);
|
||||||
|
- PARTHENOS (grant no. 654119);
|
||||||
|
- EGIEngage (grant no. 654142);
|
||||||
|
- ENVRIplus (grant no. 654182);
|
||||||
|
- BlueBRIDGE (grant no. 675680);
|
||||||
|
- PerformFish (grant no. 727610);
|
||||||
|
- AGINFRAplus (grant no. 731001);
|
||||||
|
- DESIRA (grant no. 818194);
|
||||||
|
- ARIADNEplus (grant no. 823914);
|
||||||
|
- RISIS2 (grant no. 824091);
|
|
@ -1,7 +1,10 @@
|
||||||
<?xml version="1.0" encoding="UTF-8"?>
|
<?xml version="1.0" encoding="UTF-8"?>
|
||||||
<!DOCTYPE xml>
|
<!DOCTYPE xml>
|
||||||
<ReleaseNotes>
|
<ReleaseNotes>
|
||||||
<Changeset component="org.gcube.data-catalogue.grsf-publisher-ws.1-11-0" date="${buildDate}">
|
<Changeset component="org.gcube.data-catalogue.grsf-publisher-ws.1-12-0" date="${buildDate}">
|
||||||
|
<Change>Added support for GRSF_pre VRE with the behaviour of GRSF Admin #19166</Change>
|
||||||
|
</Changeset>
|
||||||
|
<Changeset component="org.gcube.data-catalogue.grsf-publisher-ws.1-11-0" date="2020-03-30">
|
||||||
<Change>Traceability flag is assigned only to Fishery records refs #18293</Change>
|
<Change>Traceability flag is assigned only to Fishery records refs #18293</Change>
|
||||||
</Changeset>
|
</Changeset>
|
||||||
<Changeset component="org.gcube.data-catalogue.grsf-publisher-ws.1-10-0" date="2019-11-11">
|
<Changeset component="org.gcube.data-catalogue.grsf-publisher-ws.1-10-0" date="2019-11-11">
|
|
@ -13,10 +13,10 @@
|
||||||
<outputDirectory>/</outputDirectory>
|
<outputDirectory>/</outputDirectory>
|
||||||
<useDefaultExcludes>true</useDefaultExcludes>
|
<useDefaultExcludes>true</useDefaultExcludes>
|
||||||
<includes>
|
<includes>
|
||||||
<include>README</include>
|
<include>LICENSE.md</include>
|
||||||
<include>LICENSE</include>
|
<include>README.md</include>
|
||||||
<include>changelog.xml</include>
|
<include>CHANGELOG.md</include>
|
||||||
<include>profile.xml</include>
|
<include>gcube-app.xml</include>
|
||||||
</includes>
|
</includes>
|
||||||
<fileMode>755</fileMode>
|
<fileMode>755</fileMode>
|
||||||
<filtered>true</filtered>
|
<filtered>true</filtered>
|
|
@ -1 +0,0 @@
|
||||||
${gcube.license}
|
|
|
@ -1,62 +0,0 @@
|
||||||
The gCube System - ${name}
|
|
||||||
--------------------------------------------------
|
|
||||||
|
|
||||||
${description}
|
|
||||||
|
|
||||||
|
|
||||||
${gcube.description}
|
|
||||||
|
|
||||||
${gcube.funding}
|
|
||||||
|
|
||||||
|
|
||||||
Version
|
|
||||||
--------------------------------------------------
|
|
||||||
|
|
||||||
${version} (${buildDate})
|
|
||||||
|
|
||||||
Please see the file named "changelog.xml" in this directory for the release notes.
|
|
||||||
|
|
||||||
|
|
||||||
Authors
|
|
||||||
--------------------------------------------------
|
|
||||||
|
|
||||||
* Costantino Perciante (costantino.perciante-AT-isti.cnr.it), Istituto di Scienza e Tecnologie dell'Informazione "A. Faedo" - CNR, Pisa (Italy).
|
|
||||||
|
|
||||||
Maintainers
|
|
||||||
-----------
|
|
||||||
|
|
||||||
* Costantino Perciante (costantino.perciante-AT-isti.cnr.it), Istituto di Scienza e Tecnologie dell'Informazione "A. Faedo" - CNR, Pisa (Italy).
|
|
||||||
|
|
||||||
Download information
|
|
||||||
--------------------------------------------------
|
|
||||||
|
|
||||||
Source code is available from SVN:
|
|
||||||
${scm.url}
|
|
||||||
|
|
||||||
Binaries can be downloaded from the gCube website:
|
|
||||||
${gcube.website}
|
|
||||||
|
|
||||||
|
|
||||||
Installation
|
|
||||||
--------------------------------------------------
|
|
||||||
|
|
||||||
Installation documentation is available on-line in the gCube Wiki:
|
|
||||||
${gcube.wikiRoot}
|
|
||||||
|
|
||||||
Documentation
|
|
||||||
--------------------------------------------------
|
|
||||||
|
|
||||||
Documentation is available on-line in the gCube Wiki:
|
|
||||||
${gcube.wikiRoot}
|
|
||||||
|
|
||||||
Support
|
|
||||||
--------------------------------------------------
|
|
||||||
|
|
||||||
Bugs and support requests can be reported in the gCube issue tracking tool:
|
|
||||||
${gcube.issueTracking}
|
|
||||||
|
|
||||||
|
|
||||||
Licensing
|
|
||||||
--------------------------------------------------
|
|
||||||
|
|
||||||
This software is licensed under the terms you may find in the file named "LICENSE" in this directory.
|
|
|
@ -1,25 +0,0 @@
|
||||||
<?xml version="1.0" encoding="UTF-8"?>
|
|
||||||
<Resource xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
|
|
||||||
<ID></ID>
|
|
||||||
<Type>Library</Type>
|
|
||||||
<Profile>
|
|
||||||
<Description>${description}</Description>
|
|
||||||
<Class>DataCatalogue</Class>
|
|
||||||
<Name>${artifactId}</Name>
|
|
||||||
<Version>1.0.0</Version>
|
|
||||||
<Packages>
|
|
||||||
<Software>
|
|
||||||
<Name>${artifactId}</Name>
|
|
||||||
<Version>${version}</Version>
|
|
||||||
<MavenCoordinates>
|
|
||||||
<groupId>${groupId}</groupId>
|
|
||||||
<artifactId>${artifactId}</artifactId>
|
|
||||||
<version>${version}</version>
|
|
||||||
</MavenCoordinates>
|
|
||||||
<Files>
|
|
||||||
<File>${build.finalName}.war</File>
|
|
||||||
</Files>
|
|
||||||
</Software>
|
|
||||||
</Packages>
|
|
||||||
</Profile>
|
|
||||||
</Resource>
|
|
|
@ -0,0 +1,10 @@
|
||||||
|
<?xml version="1.0" encoding="UTF-8"?>
|
||||||
|
<!DOCTYPE xml>
|
||||||
|
<application mode='online'>
|
||||||
|
<name>GRSFPublisher</name>
|
||||||
|
<group>Data-Catalogue</group>
|
||||||
|
<version>${project.version}</version>
|
||||||
|
<description>${project.description}</description>
|
||||||
|
<local-persistence location='target' />
|
||||||
|
</application>
|
||||||
|
|
125
pom.xml
125
pom.xml
|
@ -11,7 +11,7 @@
|
||||||
|
|
||||||
<groupId>org.gcube.data-catalogue</groupId>
|
<groupId>org.gcube.data-catalogue</groupId>
|
||||||
<artifactId>grsf-publisher-ws</artifactId>
|
<artifactId>grsf-publisher-ws</artifactId>
|
||||||
<version>1.11.0</version>
|
<version>1.13.3</version>
|
||||||
<packaging>war</packaging>
|
<packaging>war</packaging>
|
||||||
<name>grsf-publisher-ws</name>
|
<name>grsf-publisher-ws</name>
|
||||||
<description>Utility library to publish GRSF products on GRSF catalogue.</description>
|
<description>Utility library to publish GRSF products on GRSF catalogue.</description>
|
||||||
|
@ -19,12 +19,14 @@
|
||||||
<properties>
|
<properties>
|
||||||
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
|
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
|
||||||
<version.jersey>2.22.4</version.jersey>
|
<version.jersey>2.22.4</version.jersey>
|
||||||
<version.jackson>2.6.0</version.jackson>
|
<version.jackson>2.8.11</version.jackson>
|
||||||
<distroDirectory>${project.basedir}/distro</distroDirectory>
|
<distroDirectory>${project.basedir}/distro</distroDirectory>
|
||||||
<webappDirectory>${project.build.directory}/${project.build.finalName}</webappDirectory>
|
<webappDirectory>${project.build.directory}/${project.build.finalName}</webappDirectory>
|
||||||
<distroDirectory>distro</distroDirectory>
|
<distroDirectory>distro</distroDirectory>
|
||||||
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
|
<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
|
||||||
<jsoup.version>1.10.1</jsoup.version>
|
<jsoup.version>1.10.1</jsoup.version>
|
||||||
|
<serviceClass>DataPublishing</serviceClass>
|
||||||
|
<maven.compiler.release>8</maven.compiler.release>
|
||||||
</properties>
|
</properties>
|
||||||
|
|
||||||
<scm>
|
<scm>
|
||||||
|
@ -34,18 +36,11 @@
|
||||||
</scm>
|
</scm>
|
||||||
|
|
||||||
<dependencyManagement>
|
<dependencyManagement>
|
||||||
<dependencies>
|
<dependencies>
|
||||||
<dependency>
|
|
||||||
<groupId>org.gcube.distribution</groupId>
|
|
||||||
<artifactId>gcube-bom</artifactId>
|
|
||||||
<version>1.3.1</version>
|
|
||||||
<type>pom</type>
|
|
||||||
<scope>import</scope>
|
|
||||||
</dependency>
|
|
||||||
<dependency>
|
<dependency>
|
||||||
<groupId>org.gcube.distribution</groupId>
|
<groupId>org.gcube.distribution</groupId>
|
||||||
<artifactId>gcube-smartgears-bom</artifactId>
|
<artifactId>gcube-smartgears-bom</artifactId>
|
||||||
<version>1.0.2</version>
|
<version>2.2.0</version>
|
||||||
<type>pom</type>
|
<type>pom</type>
|
||||||
<scope>import</scope>
|
<scope>import</scope>
|
||||||
</dependency>
|
</dependency>
|
||||||
|
@ -56,7 +51,16 @@
|
||||||
<dependency>
|
<dependency>
|
||||||
<groupId>org.gcube.data-catalogue</groupId>
|
<groupId>org.gcube.data-catalogue</groupId>
|
||||||
<artifactId>grsf-common-library</artifactId>
|
<artifactId>grsf-common-library</artifactId>
|
||||||
<version>[1-0-0-SNAPSHOT, 2.0.0-SNAPSHOT)</version>
|
<version>[2.0.0, 3.0.0-SNAPSHOT)</version>
|
||||||
|
</dependency>
|
||||||
|
<dependency>
|
||||||
|
<groupId>org.gcube.common</groupId>
|
||||||
|
<artifactId>storagehub-client-library</artifactId>
|
||||||
|
</dependency>
|
||||||
|
<dependency>
|
||||||
|
<groupId>org.gcube.social-networking</groupId>
|
||||||
|
<artifactId>social-service-client</artifactId>
|
||||||
|
<version>[1.0.0, 2.0.0-SNAPSHOT)</version>
|
||||||
</dependency>
|
</dependency>
|
||||||
<!-- jsoup HTML parser library @ http://jsoup.org/ -->
|
<!-- jsoup HTML parser library @ http://jsoup.org/ -->
|
||||||
<dependency>
|
<dependency>
|
||||||
|
@ -106,12 +110,7 @@
|
||||||
<artifactId>authorization-client</artifactId>
|
<artifactId>authorization-client</artifactId>
|
||||||
<scope>provided</scope>
|
<scope>provided</scope>
|
||||||
</dependency>
|
</dependency>
|
||||||
<dependency>
|
|
||||||
<groupId>org.gcube.common</groupId>
|
|
||||||
<artifactId>home-library-jcr</artifactId>
|
|
||||||
<version>[2.0.0-SNAPSHOT, 3.0.0-SNAPSHOT)</version>
|
|
||||||
<scope>compile</scope>
|
|
||||||
</dependency>
|
|
||||||
<dependency>
|
<dependency>
|
||||||
<groupId>org.gcube.common</groupId>
|
<groupId>org.gcube.common</groupId>
|
||||||
<artifactId>common-authorization</artifactId>
|
<artifactId>common-authorization</artifactId>
|
||||||
|
@ -120,32 +119,26 @@
|
||||||
<dependency>
|
<dependency>
|
||||||
<groupId>org.glassfish.jersey.containers</groupId>
|
<groupId>org.glassfish.jersey.containers</groupId>
|
||||||
<artifactId>jersey-container-servlet-core</artifactId>
|
<artifactId>jersey-container-servlet-core</artifactId>
|
||||||
<version>${version.jersey}</version>
|
|
||||||
</dependency>
|
</dependency>
|
||||||
<dependency>
|
<dependency>
|
||||||
<groupId>org.glassfish.jersey.media</groupId>
|
<groupId>org.glassfish.jersey.media</groupId>
|
||||||
<artifactId>jersey-media-json-jackson</artifactId>
|
<artifactId>jersey-media-json-jackson</artifactId>
|
||||||
<version>${version.jersey}</version>
|
|
||||||
</dependency>
|
</dependency>
|
||||||
<dependency>
|
<dependency>
|
||||||
<groupId>org.glassfish.jersey.media</groupId>
|
<groupId>org.glassfish.jersey.media</groupId>
|
||||||
<artifactId>jersey-media-json-processing</artifactId>
|
<artifactId>jersey-media-json-processing</artifactId>
|
||||||
<version>${version.jersey}</version>
|
|
||||||
</dependency>
|
</dependency>
|
||||||
<dependency>
|
<dependency>
|
||||||
<groupId>org.glassfish.jersey.media</groupId>
|
<groupId>org.glassfish.jersey.media</groupId>
|
||||||
<artifactId>jersey-media-multipart</artifactId>
|
<artifactId>jersey-media-multipart</artifactId>
|
||||||
<version>${version.jersey}</version>
|
|
||||||
</dependency>
|
</dependency>
|
||||||
<dependency>
|
<dependency>
|
||||||
<groupId>org.glassfish.jersey.media</groupId>
|
<groupId>org.glassfish.jersey.media</groupId>
|
||||||
<artifactId>jersey-media-sse</artifactId>
|
<artifactId>jersey-media-sse</artifactId>
|
||||||
<version>${version.jersey}</version>
|
|
||||||
</dependency>
|
</dependency>
|
||||||
<dependency>
|
<dependency>
|
||||||
<groupId>org.glassfish.jersey.ext</groupId>
|
<groupId>org.glassfish.jersey.ext</groupId>
|
||||||
<artifactId>jersey-bean-validation</artifactId>
|
<artifactId>jersey-bean-validation</artifactId>
|
||||||
<version>${version.jersey}</version>
|
|
||||||
</dependency>
|
</dependency>
|
||||||
<dependency>
|
<dependency>
|
||||||
<groupId>javax.servlet</groupId>
|
<groupId>javax.servlet</groupId>
|
||||||
|
@ -163,99 +156,37 @@
|
||||||
<artifactId>jackson-jaxrs-json-provider</artifactId>
|
<artifactId>jackson-jaxrs-json-provider</artifactId>
|
||||||
<version>${version.jackson}</version>
|
<version>${version.jackson}</version>
|
||||||
</dependency>
|
</dependency>
|
||||||
<dependency>
|
|
||||||
<groupId>com.fasterxml.jackson.core</groupId>
|
|
||||||
<artifactId>jackson-databind</artifactId>
|
|
||||||
<scope>provided</scope>
|
|
||||||
</dependency>
|
|
||||||
<dependency>
|
|
||||||
<groupId>com.fasterxml.jackson.core</groupId>
|
|
||||||
<artifactId>jackson-annotations</artifactId>
|
|
||||||
<scope>provided</scope>
|
|
||||||
</dependency>
|
|
||||||
<dependency>
|
|
||||||
<groupId>com.fasterxml.jackson.core</groupId>
|
|
||||||
<artifactId>jackson-core</artifactId>
|
|
||||||
<scope>provided</scope>
|
|
||||||
</dependency>
|
|
||||||
<!-- SmartGears -->
|
<!-- SmartGears -->
|
||||||
<dependency>
|
<dependency>
|
||||||
<groupId>org.gcube.core</groupId>
|
<groupId>org.gcube.core</groupId>
|
||||||
<artifactId>common-smartgears</artifactId>
|
<artifactId>common-smartgears</artifactId>
|
||||||
<scope>provided</scope>
|
<scope>provided</scope>
|
||||||
</dependency>
|
</dependency>
|
||||||
<dependency>
|
|
||||||
<groupId>org.gcube.common</groupId>
|
|
||||||
<artifactId>home-library</artifactId>
|
|
||||||
<version>[2.0.0-SNAPSHOT, 3.0.0-SNAPSHOT)</version>
|
|
||||||
<scope>compile</scope>
|
|
||||||
</dependency>
|
|
||||||
<dependency>
|
<dependency>
|
||||||
<groupId>org.glassfish.jersey.test-framework.providers</groupId>
|
<groupId>org.glassfish.jersey.test-framework.providers</groupId>
|
||||||
<artifactId>jersey-test-framework-provider-jetty</artifactId>
|
<artifactId>jersey-test-framework-provider-jetty</artifactId>
|
||||||
<version>2.23.2</version>
|
|
||||||
<scope>test</scope>
|
<scope>test</scope>
|
||||||
</dependency>
|
</dependency>
|
||||||
|
|
||||||
|
<!-- Added to support Java 11 JDK -->
|
||||||
|
<dependency>
|
||||||
|
<groupId>org.projectlombok</groupId>
|
||||||
|
<artifactId>lombok</artifactId>
|
||||||
|
<scope>provided</scope>
|
||||||
|
</dependency>
|
||||||
|
<!-- END Added to support Java 11 JDK -->
|
||||||
</dependencies>
|
</dependencies>
|
||||||
|
|
||||||
<build>
|
<build>
|
||||||
<finalName>${name}</finalName>
|
|
||||||
<plugins>
|
<plugins>
|
||||||
<plugin>
|
|
||||||
<groupId>org.apache.maven.plugins</groupId>
|
|
||||||
<artifactId>maven-war-plugin</artifactId>
|
|
||||||
<version>2.1.1</version>
|
|
||||||
<executions>
|
|
||||||
<execution>
|
|
||||||
<phase>compile</phase>
|
|
||||||
</execution>
|
|
||||||
</executions>
|
|
||||||
<configuration>
|
|
||||||
<webappDirectory>${webappDirectory}</webappDirectory>
|
|
||||||
</configuration>
|
|
||||||
</plugin>
|
|
||||||
<!-- SA Plugin -->
|
|
||||||
<plugin>
|
<plugin>
|
||||||
<groupId>org.apache.maven.plugins</groupId>
|
<groupId>org.apache.maven.plugins</groupId>
|
||||||
<artifactId>maven-assembly-plugin</artifactId>
|
<artifactId>maven-assembly-plugin</artifactId>
|
||||||
<configuration>
|
|
||||||
<descriptors>
|
|
||||||
<descriptor>${distroDirectory}/descriptor.xml</descriptor>
|
|
||||||
</descriptors>
|
|
||||||
</configuration>
|
|
||||||
<executions>
|
<executions>
|
||||||
<execution>
|
<execution>
|
||||||
<id>servicearchive</id>
|
<id>make-servicearchive</id>
|
||||||
<phase>install</phase>
|
<phase>package</phase>
|
||||||
<goals>
|
|
||||||
<goal>single</goal>
|
|
||||||
</goals>
|
|
||||||
</execution>
|
|
||||||
</executions>
|
|
||||||
</plugin>
|
|
||||||
<plugin>
|
|
||||||
<groupId>org.apache.maven.plugins</groupId>
|
|
||||||
<artifactId>maven-resources-plugin</artifactId>
|
|
||||||
<version>2.5</version>
|
|
||||||
<executions>
|
|
||||||
<execution>
|
|
||||||
<id>copy-profile</id>
|
|
||||||
<phase>install</phase>
|
|
||||||
<goals>
|
|
||||||
<goal>copy-resources</goal>
|
|
||||||
</goals>
|
|
||||||
<configuration>
|
|
||||||
<outputDirectory>target</outputDirectory>
|
|
||||||
<resources>
|
|
||||||
<resource>
|
|
||||||
<directory>${distroDirectory}</directory>
|
|
||||||
<filtering>true</filtering>
|
|
||||||
<includes>
|
|
||||||
<include>profile.xml</include>
|
|
||||||
</includes>
|
|
||||||
</resource>
|
|
||||||
</resources>
|
|
||||||
</configuration>
|
|
||||||
</execution>
|
</execution>
|
||||||
</executions>
|
</executions>
|
||||||
</plugin>
|
</plugin>
|
||||||
|
|
|
@ -21,8 +21,8 @@ public @interface Group {
|
||||||
String condition() default "";
|
String condition() default "";
|
||||||
|
|
||||||
/**
|
/**
|
||||||
* If this value is set, it is the name of the group (apart the source, i.e. "grsf", "ram", "firms", "fishsource" that will be prepended) to which the
|
* If this value is set, it is used as name of the group in place of the filed value.
|
||||||
* record needs to be put.
|
* (apart the source, i.e. "grsf", "ram", "firms", "fishsource" that will be prepended depending on prependSourceToGroupName)
|
||||||
* @return
|
* @return
|
||||||
*/
|
*/
|
||||||
String groupNameOverValue() default "";
|
String groupNameOverValue() default "";
|
||||||
|
@ -32,6 +32,6 @@ public @interface Group {
|
||||||
* Set to false to avoid source prepending
|
* Set to false to avoid source prepending
|
||||||
* @return
|
* @return
|
||||||
*/
|
*/
|
||||||
boolean prependSourceToGroupName() default true;
|
boolean prependSourceToGroupName() default false;
|
||||||
|
|
||||||
}
|
}
|
||||||
|
|
|
@ -202,12 +202,18 @@ public abstract class Base {
|
||||||
|
|
||||||
@Override
|
@Override
|
||||||
public String toString() {
|
public String toString() {
|
||||||
return "Base [catalogId=" + catalogId + ", description=" + description
|
return "Base ["
|
||||||
+ ", license=" + license + ", author=" + author
|
+ "catalogId=" + catalogId
|
||||||
+ ", authorContact=" + authorContact + ", version=" + version
|
+ ", description=" + description
|
||||||
+ ", maintainer=" + maintainer + ", maintainerContact="
|
+ ", license=" + license
|
||||||
+ maintainerContact + ", extrasFields=" + extrasFields
|
+ ", author=" + author
|
||||||
+ ", extrasResources=" + extrasResources + "]";
|
+ ", authorContact=" + authorContact
|
||||||
|
+ ", version=" + version
|
||||||
|
+ ", maintainer=" + maintainer
|
||||||
|
+ ", maintainerContact=" + maintainerContact
|
||||||
|
+ ", extrasFields=" + extrasFields
|
||||||
|
+ ", extrasResources=" + extrasResources
|
||||||
|
+ "]";
|
||||||
}
|
}
|
||||||
|
|
||||||
}
|
}
|
|
@ -28,13 +28,14 @@ import com.fasterxml.jackson.annotation.JsonProperty;
|
||||||
* @author Luca Frosini (ISTI - CNR)
|
* @author Luca Frosini (ISTI - CNR)
|
||||||
*
|
*
|
||||||
*/
|
*/
|
||||||
public abstract class Common extends Base{
|
public abstract class Common extends Base {
|
||||||
|
|
||||||
@JsonProperty(Constants.DATA_OWNER_JSON_KEY)
|
@JsonProperty(Constants.DATA_OWNER_JSON_KEY)
|
||||||
@CustomField(key=Constants.DATA_OWNER_CUSTOM_KEY)
|
@CustomField(key=Constants.DATA_OWNER_CUSTOM_KEY)
|
||||||
private List<String> dataOwner;
|
private List<String> dataOwner;
|
||||||
|
|
||||||
@JsonProperty(Constants.DATABASE_SOURCES_JSON_KEY)
|
@JsonProperty(Constants.DATABASE_SOURCES_JSON_KEY)
|
||||||
|
@CustomField(key=Constants.DATABASE_SOURCES_CUSTOM_KEY)
|
||||||
@CkanResource
|
@CkanResource
|
||||||
@Valid
|
@Valid
|
||||||
private List<Resource<Sources>> databaseSources;
|
private List<Resource<Sources>> databaseSources;
|
||||||
|
@ -54,7 +55,7 @@ public abstract class Common extends Base{
|
||||||
|
|
||||||
@JsonProperty(Constants.SDG_FLAG_JSON_KEY)
|
@JsonProperty(Constants.SDG_FLAG_JSON_KEY)
|
||||||
@CustomField(key=Constants.SDG_FLAG_CUSTOM_KEY)
|
@CustomField(key=Constants.SDG_FLAG_CUSTOM_KEY)
|
||||||
@Group(condition="true", groupNameOverValue=Constants.SDG_FLAG_GROUP_NAME) // record is added to group grsf-sdg-flag if sdg Flag is true
|
@Group(condition="true", groupNameOverValue=Constants.SDG_FLAG_GROUP_NAME, prependSourceToGroupName=false) // record is added to group grsf-sdg-flag if sdg Flag is true
|
||||||
private Boolean sdgFlag;
|
private Boolean sdgFlag;
|
||||||
|
|
||||||
@JsonProperty(Constants.STATUS_OF_THE_GRSF_RECORD_JSON_KEY)
|
@JsonProperty(Constants.STATUS_OF_THE_GRSF_RECORD_JSON_KEY)
|
||||||
|
@ -88,10 +89,6 @@ public abstract class Common extends Base{
|
||||||
@CustomField(key=Constants.SIMILAR_GRSF_RECORDS_CUSTOM_KEY)
|
@CustomField(key=Constants.SIMILAR_GRSF_RECORDS_CUSTOM_KEY)
|
||||||
private List<SimilarRecordBean> similarGRSFRecords;
|
private List<SimilarRecordBean> similarGRSFRecords;
|
||||||
|
|
||||||
@JsonProperty(Constants.SIMILAR_SOURCE_RECORDS_JSON_KEY)
|
|
||||||
@CustomField(key=Constants.SIMILAR_SOURCE_RECORDS_CUSTOM_KEY)
|
|
||||||
private List<SimilarRecordBean> similarSourceRecords;
|
|
||||||
|
|
||||||
// automatically set
|
// automatically set
|
||||||
@CustomField(key=Constants.DOMAIN_CUSTOM_KEY)
|
@CustomField(key=Constants.DOMAIN_CUSTOM_KEY)
|
||||||
private String domain;
|
private String domain;
|
||||||
|
@ -113,7 +110,11 @@ public abstract class Common extends Base{
|
||||||
@JsonProperty(Constants.CONNECTED_JSON_KEY)
|
@JsonProperty(Constants.CONNECTED_JSON_KEY)
|
||||||
@CustomField(key=Constants.CONNECTED_CUSTOM_KEY)
|
@CustomField(key=Constants.CONNECTED_CUSTOM_KEY)
|
||||||
private List<String> connectedBeans;
|
private List<String> connectedBeans;
|
||||||
|
|
||||||
|
@JsonProperty(Constants.CONNECTIONS_INDICATOR)
|
||||||
|
@Tag
|
||||||
|
private String connectionsIndicator;
|
||||||
|
|
||||||
@JsonProperty(Constants.ANNOTATION_PUBLISHER_JSON_KEY)
|
@JsonProperty(Constants.ANNOTATION_PUBLISHER_JSON_KEY)
|
||||||
@CustomField(key=Constants.ANNOTATION_PUBLISHER_CUSTOM_KEY)
|
@CustomField(key=Constants.ANNOTATION_PUBLISHER_CUSTOM_KEY)
|
||||||
private List<AnnotationBean> annotations;
|
private List<AnnotationBean> annotations;
|
||||||
|
@ -122,10 +123,6 @@ public abstract class Common extends Base{
|
||||||
@Tag
|
@Tag
|
||||||
private String similaritiesIndicator;
|
private String similaritiesIndicator;
|
||||||
|
|
||||||
@JsonProperty(Constants.CONNECTIONS_INDICATOR)
|
|
||||||
@Tag
|
|
||||||
private String connectionsIndicator;
|
|
||||||
|
|
||||||
@JsonProperty(Constants.CITATION_JSON_KEY)
|
@JsonProperty(Constants.CITATION_JSON_KEY)
|
||||||
@CustomField(key=Constants.CITATION_CUSTOM_KEY)
|
@CustomField(key=Constants.CITATION_CUSTOM_KEY)
|
||||||
private String citation;
|
private String citation;
|
||||||
|
@ -180,7 +177,6 @@ public abstract class Common extends Base{
|
||||||
this.landings = landings;
|
this.landings = landings;
|
||||||
this.species = species;
|
this.species = species;
|
||||||
this.similarGRSFRecords = similarGRSFRecords;
|
this.similarGRSFRecords = similarGRSFRecords;
|
||||||
this.similarSourceRecords = similarSourceRecords;
|
|
||||||
this.domain = domain;
|
this.domain = domain;
|
||||||
this.uuid = uuid;
|
this.uuid = uuid;
|
||||||
this.managementBodyAuthorities = managementBodyAuthorities;
|
this.managementBodyAuthorities = managementBodyAuthorities;
|
||||||
|
@ -228,6 +224,7 @@ public abstract class Common extends Base{
|
||||||
public void setRefersTo(List<RefersToBean> refersTo) {
|
public void setRefersTo(List<RefersToBean> refersTo) {
|
||||||
this.refersTo = refersTo;
|
this.refersTo = refersTo;
|
||||||
}
|
}
|
||||||
|
|
||||||
public List<Resource<Sources>> getDatabaseSources() {
|
public List<Resource<Sources>> getDatabaseSources() {
|
||||||
return databaseSources;
|
return databaseSources;
|
||||||
}
|
}
|
||||||
|
@ -300,14 +297,6 @@ public abstract class Common extends Base{
|
||||||
this.similarGRSFRecords = similarGRSFRecords;
|
this.similarGRSFRecords = similarGRSFRecords;
|
||||||
}
|
}
|
||||||
|
|
||||||
public List<SimilarRecordBean> getSimilarSourceRecords() {
|
|
||||||
return similarSourceRecords;
|
|
||||||
}
|
|
||||||
|
|
||||||
public void setSimilarSourceRecords(List<SimilarRecordBean> similarSourceRecords) {
|
|
||||||
this.similarSourceRecords = similarSourceRecords;
|
|
||||||
}
|
|
||||||
|
|
||||||
public String getSpatial() {
|
public String getSpatial() {
|
||||||
return spatial;
|
return spatial;
|
||||||
}
|
}
|
||||||
|
@ -367,17 +356,28 @@ public abstract class Common extends Base{
|
||||||
|
|
||||||
@Override
|
@Override
|
||||||
public String toString() {
|
public String toString() {
|
||||||
return "Common [dataOwner=" + dataOwner + ", databaseSources="
|
return super.toString() + " - Common ["
|
||||||
+ databaseSources + ", sourceOfInformation="
|
+ " dataOwner=" + dataOwner
|
||||||
+ sourceOfInformation + ", refersTo=" + refersTo
|
+ ", databaseSources=" + databaseSources
|
||||||
+ ", shortName=" + shortName + ", sdgFlag=" + sdgFlag + ", status="
|
+ ", sourceOfInformation=" + sourceOfInformation
|
||||||
+ status + ", systemType=" + systemType + ", catches="
|
+ ", refersTo=" + refersTo
|
||||||
+ catches + ", landings=" + landings + ", species=" + species
|
+ ", shortName=" + shortName
|
||||||
|
+ ", sdgFlag=" + sdgFlag
|
||||||
|
+ ", status=" + status
|
||||||
|
+ ", systemType=" + systemType
|
||||||
|
+ ", catches=" + catches
|
||||||
|
+ ", landings=" + landings
|
||||||
|
+ ", species=" + species
|
||||||
+ ", similarGRSFRecords=" + similarGRSFRecords
|
+ ", similarGRSFRecords=" + similarGRSFRecords
|
||||||
+ ", similarSourceRecords=" + similarSourceRecords
|
+ ", domain=" + domain
|
||||||
+ ", domain=" + domain + ", uuid=" + uuid
|
+ ", uuid=" + uuid
|
||||||
+ ", managementBodyAuthorities=" + managementBodyAuthorities
|
+ ", managementBodyAuthorities=" + managementBodyAuthorities
|
||||||
+ ", spatial=" + spatial + ", connectedBeans=" + connectedBeans
|
+ ", spatial=" + spatial
|
||||||
+ ", annotations=" + annotations + "]";
|
+ ", connectedBeans=" + connectedBeans
|
||||||
|
+ ", annotations=" + annotations
|
||||||
|
+ ", similaritiesIndicator=" + similaritiesIndicator
|
||||||
|
+ ", connectionsIndicator=" + connectionsIndicator
|
||||||
|
+ ", citation=" + citation
|
||||||
|
+ "]";
|
||||||
}
|
}
|
||||||
}
|
}
|
|
@ -21,38 +21,35 @@ import com.fasterxml.jackson.annotation.JsonProperty;
|
||||||
*/
|
*/
|
||||||
public class FisheryRecord extends Common {
|
public class FisheryRecord extends Common {
|
||||||
|
|
||||||
@JsonProperty(Constants.TRACEABILITY_FLAG_JSON_KEY)
|
|
||||||
@CustomField(key=Constants.TRACEABILITY_FLAG_CUSTOM_KEY)
|
|
||||||
@Group(condition="true", groupNameOverValue=Constants.TRACEABILITY_FLAG_GROUP_NAME) // record is added to group grsf-traceability-flag if Traceability Flag is true
|
|
||||||
private Boolean traceabilityFlag;
|
|
||||||
|
|
||||||
@JsonProperty(Constants.FISHERY_NAME_JSON_KEY)
|
@JsonProperty(Constants.FISHERY_NAME_JSON_KEY)
|
||||||
|
@CustomField(key=Constants.FISHERY_NAME_CUSTOM_KEY)
|
||||||
@NotNull(message="fishery_name cannot be null")
|
@NotNull(message="fishery_name cannot be null")
|
||||||
@Size(min=1, message="fishery_name cannot be empty")
|
@Size(min=1, message="fishery_name cannot be empty")
|
||||||
@CustomField(key=Constants.FISHERY_NAME_CUSTOM_KEY)
|
|
||||||
private String fisheryName;
|
private String fisheryName;
|
||||||
|
|
||||||
@JsonProperty(Constants.GRSF_SEMANTIC_IDENTIFIER_JSON_KEY)
|
@JsonProperty(Constants.GRSF_SEMANTIC_IDENTIFIER_JSON_KEY)
|
||||||
@CustomField(key=Constants.GRSF_SEMANTIC_IDENTIFIER_CUSTOM_KEY)
|
@CustomField(key=Constants.GRSF_SEMANTIC_IDENTIFIER_CUSTOM_KEY)
|
||||||
private String fisheryId;
|
private String fisheryId;
|
||||||
|
|
||||||
|
@JsonProperty(Constants.TRACEABILITY_FLAG_JSON_KEY)
|
||||||
|
@CustomField(key=Constants.TRACEABILITY_FLAG_CUSTOM_KEY)
|
||||||
|
@Group(condition="true", groupNameOverValue=Constants.TRACEABILITY_FLAG_GROUP_NAME, prependSourceToGroupName=false) // record is added to group grsf-traceability-flag if Traceability Flag is true
|
||||||
|
private Boolean traceabilityFlag;
|
||||||
|
|
||||||
@JsonProperty(Constants.FISHING_AREA_JSON_KEY)
|
@JsonProperty(Constants.FISHING_AREA_JSON_KEY)
|
||||||
@CustomField(key=Constants.FISHING_AREA_CUSTOM_KEY)
|
@CustomField(key=Constants.FISHING_AREA_CUSTOM_KEY)
|
||||||
@Tag
|
@Tag
|
||||||
private List<String> fishingArea;
|
private List<String> fishingArea;
|
||||||
|
|
||||||
|
@JsonProperty(Constants.JURISDICTION_AREA_JSON_KEY)
|
||||||
|
@CustomField(key=Constants.JURISDICTION_AREA_CUSTOM_KEY)
|
||||||
|
@Tag
|
||||||
|
private List<String> jurisdictionArea;
|
||||||
|
|
||||||
@JsonProperty(Constants.RESOURCES_EXPLOITED_JSON_KEY)
|
@JsonProperty(Constants.RESOURCES_EXPLOITED_JSON_KEY)
|
||||||
@CustomField(key=Constants.RESOURCES_EXPLOITED_CUSTOM_KEY)
|
@CustomField(key=Constants.RESOURCES_EXPLOITED_CUSTOM_KEY)
|
||||||
private List<String> resourcesExploited;
|
private List<String> resourcesExploited;
|
||||||
|
|
||||||
@JsonProperty(Constants.JURISDICTION_AREA_JSON_KEY)
|
|
||||||
@CustomField(key=Constants.JURISDICTION_AREA_CUSTOM_KEY)
|
|
||||||
private List<String> jurisdictionArea;
|
|
||||||
|
|
||||||
@JsonProperty(Constants.PRODUCTION_SYSTEM_TYPE_JSON_KEY)
|
|
||||||
@CustomField(key=Constants.PRODUCTION_SYSTEM_TYPE_CUSTOM_KEY)
|
|
||||||
private List<Production_System_Type> productionSystemType;
|
|
||||||
|
|
||||||
@JsonProperty(Constants.FLAG_STATE_JSON_KEY)
|
@JsonProperty(Constants.FLAG_STATE_JSON_KEY)
|
||||||
@CustomField(key=Constants.FLAG_STATE_CUSTOM_KEY)
|
@CustomField(key=Constants.FLAG_STATE_CUSTOM_KEY)
|
||||||
@Tag
|
@Tag
|
||||||
|
@ -65,7 +62,6 @@ public class FisheryRecord extends Common {
|
||||||
|
|
||||||
@JsonProperty(Constants.GRSF_TYPE_JSON_KEY)
|
@JsonProperty(Constants.GRSF_TYPE_JSON_KEY)
|
||||||
@CustomField(key=Constants.GRSF_TYPE_CUSTOM_KEY)
|
@CustomField(key=Constants.GRSF_TYPE_CUSTOM_KEY)
|
||||||
@Group
|
|
||||||
@Tag
|
@Tag
|
||||||
private Fishery_Type type;
|
private Fishery_Type type;
|
||||||
|
|
||||||
|
@ -97,7 +93,6 @@ public class FisheryRecord extends Common {
|
||||||
this.fishingArea = fishingArea;
|
this.fishingArea = fishingArea;
|
||||||
this.resourcesExploited = resourcesExploited;
|
this.resourcesExploited = resourcesExploited;
|
||||||
this.jurisdictionArea = jurisdictionArea;
|
this.jurisdictionArea = jurisdictionArea;
|
||||||
this.productionSystemType = productionSystemType;
|
|
||||||
this.flagState = flagState;
|
this.flagState = flagState;
|
||||||
this.fishingGear = fishingGear;
|
this.fishingGear = fishingGear;
|
||||||
this.type = type;
|
this.type = type;
|
||||||
|
@ -165,15 +160,6 @@ public class FisheryRecord extends Common {
|
||||||
this.resourcesExploited = resourcesExploited;
|
this.resourcesExploited = resourcesExploited;
|
||||||
}
|
}
|
||||||
|
|
||||||
public List<Production_System_Type> getProductionSystemType() {
|
|
||||||
return productionSystemType;
|
|
||||||
}
|
|
||||||
|
|
||||||
public void setProductionSystemType(
|
|
||||||
List<Production_System_Type> productionSystemType) {
|
|
||||||
this.productionSystemType = productionSystemType;
|
|
||||||
}
|
|
||||||
|
|
||||||
public List<String> getFlagState() {
|
public List<String> getFlagState() {
|
||||||
return flagState;
|
return flagState;
|
||||||
}
|
}
|
||||||
|
@ -197,7 +183,6 @@ public class FisheryRecord extends Common {
|
||||||
+ ", traceabilityFlag=" + traceabilityFlag
|
+ ", traceabilityFlag=" + traceabilityFlag
|
||||||
+ ", resourcesExploited=" + resourcesExploited
|
+ ", resourcesExploited=" + resourcesExploited
|
||||||
+ ", jurisdictionArea=" + jurisdictionArea
|
+ ", jurisdictionArea=" + jurisdictionArea
|
||||||
+ ", productionSystemType=" + productionSystemType
|
|
||||||
+ ", flagState=" + flagState + ", fishingGear=" + fishingGear
|
+ ", flagState=" + flagState + ", fishingGear=" + fishingGear
|
||||||
+ ", type=" + type + "]";
|
+ ", type=" + type + "]";
|
||||||
}
|
}
|
||||||
|
|
|
@ -26,9 +26,9 @@ import com.fasterxml.jackson.annotation.JsonProperty;
|
||||||
public class StockRecord extends Common{
|
public class StockRecord extends Common{
|
||||||
|
|
||||||
@JsonProperty(Constants.STOCK_NAME_JSON_KEY)
|
@JsonProperty(Constants.STOCK_NAME_JSON_KEY)
|
||||||
|
@CustomField(key=Constants.STOCK_NAME_CUSTOM_KEY)
|
||||||
@NotNull(message=Constants.STOCK_NAME_JSON_KEY + " cannot be null")
|
@NotNull(message=Constants.STOCK_NAME_JSON_KEY + " cannot be null")
|
||||||
@Size(min=2, message=Constants.STOCK_NAME_JSON_KEY + " cannot be empty")
|
@Size(min=2, message=Constants.STOCK_NAME_JSON_KEY + " cannot be empty")
|
||||||
@CustomField(key=Constants.STOCK_NAME_CUSTOM_KEY)
|
|
||||||
private String stockName;
|
private String stockName;
|
||||||
|
|
||||||
@JsonProperty(Constants.GRSF_SEMANTIC_IDENTIFIER_JSON_KEY)
|
@JsonProperty(Constants.GRSF_SEMANTIC_IDENTIFIER_JSON_KEY)
|
||||||
|
@ -46,6 +46,7 @@ public class StockRecord extends Common{
|
||||||
|
|
||||||
@JsonProperty(Constants.ASSESSMENT_METHODS_JSON_KEY)
|
@JsonProperty(Constants.ASSESSMENT_METHODS_JSON_KEY)
|
||||||
@CustomField(key=Constants.ASSESSMENT_METHODS_CUSTOM_KEY)
|
@CustomField(key=Constants.ASSESSMENT_METHODS_CUSTOM_KEY)
|
||||||
|
@Group(groupNameOverValue=Constants.ASSESSMENT_METHODS_CUSTOM_KEY, prependSourceToGroupName=false)
|
||||||
private List<String> assessmentMethods;
|
private List<String> assessmentMethods;
|
||||||
|
|
||||||
@JsonProperty(Constants.FIRMS_ABUNDANCE_LEVEL_JSON_KEY)
|
@JsonProperty(Constants.FIRMS_ABUNDANCE_LEVEL_JSON_KEY)
|
||||||
|
@ -99,8 +100,9 @@ public class StockRecord extends Common{
|
||||||
|
|
||||||
@JsonProperty(Constants.SCIENTIFIC_ADVICE_JSON_KEY)
|
@JsonProperty(Constants.SCIENTIFIC_ADVICE_JSON_KEY)
|
||||||
@CustomField(key=Constants.SCIENTIFIC_ADVICE_CUSTOM_KEY)
|
@CustomField(key=Constants.SCIENTIFIC_ADVICE_CUSTOM_KEY)
|
||||||
|
@TimeSeries
|
||||||
@Group(groupNameOverValue=Constants.SCIENTIFIC_ADVICE_CUSTOM_KEY, prependSourceToGroupName=false)
|
@Group(groupNameOverValue=Constants.SCIENTIFIC_ADVICE_CUSTOM_KEY, prependSourceToGroupName=false)
|
||||||
private List<String> scientificAdvice;
|
private List<TimeSeriesBean<String, Void>> scientificAdvice;
|
||||||
|
|
||||||
@JsonProperty(Constants.ASSESSOR_JSON_KEY)
|
@JsonProperty(Constants.ASSESSOR_JSON_KEY)
|
||||||
@CustomField(key=Constants.ASSESSOR_CUSTOM_KEY)
|
@CustomField(key=Constants.ASSESSOR_CUSTOM_KEY)
|
||||||
|
@ -108,7 +110,6 @@ public class StockRecord extends Common{
|
||||||
|
|
||||||
@JsonProperty(Constants.GRSF_TYPE_JSON_KEY)
|
@JsonProperty(Constants.GRSF_TYPE_JSON_KEY)
|
||||||
@CustomField(key=Constants.GRSF_TYPE_CUSTOM_KEY)
|
@CustomField(key=Constants.GRSF_TYPE_CUSTOM_KEY)
|
||||||
@Group
|
|
||||||
@Tag
|
@Tag
|
||||||
private Stock_Type type;
|
private Stock_Type type;
|
||||||
|
|
||||||
|
@ -146,7 +147,7 @@ public class StockRecord extends Common{
|
||||||
List<TimeSeriesBean<String, String>> fishingPressure,
|
List<TimeSeriesBean<String, String>> fishingPressure,
|
||||||
List<TimeSeriesBean<String, Void>> narrativeState,
|
List<TimeSeriesBean<String, Void>> narrativeState,
|
||||||
List<TimeSeriesBean<String, Void>> faoState,
|
List<TimeSeriesBean<String, Void>> faoState,
|
||||||
List<String> scientificAdvice, String assessor, Stock_Type type) {
|
List<TimeSeriesBean<String, Void>> scientificAdvice, String assessor, Stock_Type type) {
|
||||||
super();
|
super();
|
||||||
this.stockName = stockName;
|
this.stockName = stockName;
|
||||||
this.stockId = stockId;
|
this.stockId = stockId;
|
||||||
|
@ -262,11 +263,11 @@ public class StockRecord extends Common{
|
||||||
this.narrativeState = narrativeState;
|
this.narrativeState = narrativeState;
|
||||||
}
|
}
|
||||||
|
|
||||||
public List<String> getScientificAdvice() {
|
public List<TimeSeriesBean<String, Void>> getScientificAdvice() {
|
||||||
return scientificAdvice;
|
return scientificAdvice;
|
||||||
}
|
}
|
||||||
|
|
||||||
public void setScientificAdvice(List<String> scientificAdvice) {
|
public void setScientificAdvice(List<TimeSeriesBean<String, Void>> scientificAdvice) {
|
||||||
this.scientificAdvice = scientificAdvice;
|
this.scientificAdvice = scientificAdvice;
|
||||||
}
|
}
|
||||||
|
|
||||||
|
|
|
@ -51,7 +51,7 @@ import eu.trentorise.opendata.jackan.model.CkanDataset;
|
||||||
* @author Costantino Perciante (ISTI - CNR)
|
* @author Costantino Perciante (ISTI - CNR)
|
||||||
* @author Luca Frosini (ISTI - CNR)
|
* @author Luca Frosini (ISTI - CNR)
|
||||||
*/
|
*/
|
||||||
@Path("{source:firms|FIRMS|grsf|GRSF|FishSource|fishsource}/fishery/")
|
@Path("{source:firms|FIRMS|grsf|GRSF|FishSource|fishsource|sdg|SDG}/fishery/")
|
||||||
public class GrsfPublisherFisheryService {
|
public class GrsfPublisherFisheryService {
|
||||||
|
|
||||||
// the context
|
// the context
|
||||||
|
@ -120,6 +120,8 @@ public class GrsfPublisherFisheryService {
|
||||||
|
|
||||||
String apiKey = catalogue.getApiKeyFromUsername(username);
|
String apiKey = catalogue.getApiKeyFromUsername(username);
|
||||||
String organization = HelperMethods.retrieveOrgNameFromScope(context);
|
String organization = HelperMethods.retrieveOrgNameFromScope(context);
|
||||||
|
|
||||||
|
|
||||||
CommonServiceUtils.hasAdminRole(username, catalogue, apiKey, organization);
|
CommonServiceUtils.hasAdminRole(username, catalogue, apiKey, organization);
|
||||||
|
|
||||||
// extend this role to the other organizations in this context
|
// extend this role to the other organizations in this context
|
||||||
|
@ -255,7 +257,7 @@ public class GrsfPublisherFisheryService {
|
||||||
String type = fisheryInCkan.getExtrasAsHashMap().get(Constants.DOMAIN_CUSTOM_KEY);
|
String type = fisheryInCkan.getExtrasAsHashMap().get(Constants.DOMAIN_CUSTOM_KEY);
|
||||||
|
|
||||||
if((fisheryInCkan.getOrganization().getName().equalsIgnoreCase(source)
|
if((fisheryInCkan.getOrganization().getName().equalsIgnoreCase(source)
|
||||||
|| fisheryInCkan.getOrganization().getName().toLowerCase().contains(source))
|
|| fisheryInCkan.getOrganization().getName().toLowerCase().startsWith(source.toLowerCase()))
|
||||||
&& Product_Type.FISHERY.getOrigName().equals(type)) {
|
&& Product_Type.FISHERY.getOrigName().equals(type)) {
|
||||||
|
|
||||||
logger.debug("Ok, this is a fishery of the right source, removing it");
|
logger.debug("Ok, this is a fishery of the right source, removing it");
|
||||||
|
@ -549,7 +551,7 @@ public class GrsfPublisherFisheryService {
|
||||||
|
|
||||||
// check system type
|
// check system type
|
||||||
boolean isGRSF = !record.getExtrasAsHashMap().get(Constants.SYSTEM_TYPE_CUSTOM_KEY)
|
boolean isGRSF = !record.getExtrasAsHashMap().get(Constants.SYSTEM_TYPE_CUSTOM_KEY)
|
||||||
.equals(Constants.SYSTEM_TYPE_FOR_SOURCES_VALUE);
|
.equals(Constants.SYSTEM_TYPE_LEGACY_RECORD);
|
||||||
|
|
||||||
if(!isGRSF)
|
if(!isGRSF)
|
||||||
throw new Exception("You are trying to modify a Legacy record!");
|
throw new Exception("You are trying to modify a Legacy record!");
|
||||||
|
|
|
@ -51,7 +51,7 @@ import eu.trentorise.opendata.jackan.model.CkanDataset;
|
||||||
* @author Costantino Perciante (ISTI - CNR)
|
* @author Costantino Perciante (ISTI - CNR)
|
||||||
* @author Luca Frosini (ISTI - CNR)
|
* @author Luca Frosini (ISTI - CNR)
|
||||||
*/
|
*/
|
||||||
@Path("{source:firms|FIRMS|ram|RAM|grsf|GRSF|FishSource|fishsource}/stock/")
|
@Path("{source:firms|FIRMS|ram|RAM|grsf|GRSF|FishSource|fishsource|sdg|SDG}/stock/")
|
||||||
public class GrsfPublisherStockService {
|
public class GrsfPublisherStockService {
|
||||||
|
|
||||||
// the context
|
// the context
|
||||||
|
@ -260,7 +260,7 @@ public class GrsfPublisherStockService {
|
||||||
// check it is in the right source and it is a stock
|
// check it is in the right source and it is a stock
|
||||||
String type = stockInCkan.getExtrasAsHashMap().get(Constants.DOMAIN_CUSTOM_KEY);
|
String type = stockInCkan.getExtrasAsHashMap().get(Constants.DOMAIN_CUSTOM_KEY);
|
||||||
if((stockInCkan.getOrganization().getName().equalsIgnoreCase(source)
|
if((stockInCkan.getOrganization().getName().equalsIgnoreCase(source)
|
||||||
|| stockInCkan.getOrganization().getName().toLowerCase().contains(source))
|
|| stockInCkan.getOrganization().getName().toLowerCase().startsWith(source.toLowerCase()))
|
||||||
&& Product_Type.STOCK.getOrigName().equals(type)) {
|
&& Product_Type.STOCK.getOrigName().equals(type)) {
|
||||||
|
|
||||||
logger.debug("Ok, this is a stock of the right type, removing it");
|
logger.debug("Ok, this is a stock of the right type, removing it");
|
||||||
|
@ -554,7 +554,7 @@ public class GrsfPublisherStockService {
|
||||||
|
|
||||||
// check system type
|
// check system type
|
||||||
boolean isGRSF = !record.getExtrasAsHashMap().get(Constants.SYSTEM_TYPE_CUSTOM_KEY)
|
boolean isGRSF = !record.getExtrasAsHashMap().get(Constants.SYSTEM_TYPE_CUSTOM_KEY)
|
||||||
.equals(Constants.SYSTEM_TYPE_FOR_SOURCES_VALUE);
|
.equals(Constants.SYSTEM_TYPE_LEGACY_RECORD);
|
||||||
|
|
||||||
if(!isGRSF)
|
if(!isGRSF)
|
||||||
throw new Exception("You are trying to modify a Legacy record!");
|
throw new Exception("You are trying to modify a Legacy record!");
|
||||||
|
|
|
@ -4,7 +4,6 @@ import java.beans.PropertyDescriptor;
|
||||||
import java.lang.reflect.Field;
|
import java.lang.reflect.Field;
|
||||||
import java.util.ArrayList;
|
import java.util.ArrayList;
|
||||||
import java.util.Arrays;
|
import java.util.Arrays;
|
||||||
import java.util.Collections;
|
|
||||||
import java.util.HashMap;
|
import java.util.HashMap;
|
||||||
import java.util.HashSet;
|
import java.util.HashSet;
|
||||||
import java.util.List;
|
import java.util.List;
|
||||||
|
@ -36,7 +35,6 @@ import org.gcube.datacatalogue.common.Constants;
|
||||||
import org.gcube.datacatalogue.common.enums.Product_Type;
|
import org.gcube.datacatalogue.common.enums.Product_Type;
|
||||||
import org.gcube.datacatalogue.common.enums.Sources;
|
import org.gcube.datacatalogue.common.enums.Sources;
|
||||||
import org.gcube.datacatalogue.common.enums.Status;
|
import org.gcube.datacatalogue.common.enums.Status;
|
||||||
import org.gcube.datacatalogue.common.enums.Stock_Type;
|
|
||||||
import org.json.simple.JSONObject;
|
import org.json.simple.JSONObject;
|
||||||
import org.slf4j.LoggerFactory;
|
import org.slf4j.LoggerFactory;
|
||||||
|
|
||||||
|
@ -219,6 +217,90 @@ public class CommonServiceUtils {
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
|
public static final String GROUP_SUFFIX = "-group";
|
||||||
|
|
||||||
|
/**
|
||||||
|
* Convert a group name to its id on ckan
|
||||||
|
* @param origName
|
||||||
|
* @return
|
||||||
|
*/
|
||||||
|
private static String getGroupIDOnCkan(String origName){
|
||||||
|
if(origName == null) {
|
||||||
|
throw new IllegalArgumentException("origName cannot be null");
|
||||||
|
}
|
||||||
|
String modified = origName.replaceAll("\\(", "");
|
||||||
|
modified = modified.replaceAll("\\)", "");
|
||||||
|
modified = modified.trim().toLowerCase().replaceAll("[^A-Za-z0-9-]", "-");
|
||||||
|
if(modified.startsWith("-")) {
|
||||||
|
modified = modified.substring(1);
|
||||||
|
}
|
||||||
|
if(modified.endsWith("-")) {
|
||||||
|
modified = modified.substring(0, modified.length() -1);
|
||||||
|
}
|
||||||
|
return modified;
|
||||||
|
}
|
||||||
|
|
||||||
|
public static String getGroupId(String groupName) {
|
||||||
|
StringBuffer stringBuffer = new StringBuffer();
|
||||||
|
stringBuffer.append(groupName);
|
||||||
|
/*
|
||||||
|
* The "_group" suffix is added to all groups to
|
||||||
|
* avoid issues on groups and organizations having the same name
|
||||||
|
* e.g. RAM organization (id=ram) and RAM group (id=ram_group)
|
||||||
|
*/
|
||||||
|
if(!groupName.endsWith(GROUP_SUFFIX)) {
|
||||||
|
stringBuffer.append(GROUP_SUFFIX);
|
||||||
|
}
|
||||||
|
return getGroupIDOnCkan(stringBuffer.toString());
|
||||||
|
}
|
||||||
|
|
||||||
|
private static void addGroup(Group group, Sources source, String value, Set<String> groups) {
|
||||||
|
String conditionToCheck = group.condition();
|
||||||
|
String groupNameOverValue = group.groupNameOverValue();
|
||||||
|
boolean prependSource = group.prependSourceToGroupName();
|
||||||
|
|
||||||
|
boolean match = conditionToCheck.isEmpty() ? true
|
||||||
|
: value.matches(conditionToCheck);
|
||||||
|
|
||||||
|
if(match) {
|
||||||
|
StringBuffer stringBuffer = new StringBuffer();
|
||||||
|
if(prependSource) {
|
||||||
|
stringBuffer.append(source.getURLPath());
|
||||||
|
stringBuffer.append(" ");
|
||||||
|
}
|
||||||
|
if(groupNameOverValue.isEmpty()) {
|
||||||
|
stringBuffer.append(value);
|
||||||
|
}else {
|
||||||
|
stringBuffer.append(groupNameOverValue);
|
||||||
|
}
|
||||||
|
String groupId = getGroupId(stringBuffer.toString());
|
||||||
|
groups.add(groupId);
|
||||||
|
}
|
||||||
|
|
||||||
|
}
|
||||||
|
|
||||||
|
/**
|
||||||
|
* Add the record to the group of sources
|
||||||
|
* @param groups
|
||||||
|
* @param sourcesList
|
||||||
|
* @param productType
|
||||||
|
* @param sourceInPath
|
||||||
|
*/
|
||||||
|
private static void addRecordToGroups(Set<String> groups, Set<String> sourcesList, Product_Type productType, Sources sourceInPath) {
|
||||||
|
if(sourceInPath == Sources.GRSF) {
|
||||||
|
groups.add(getGroupId(Sources.GRSF.getURLPath())); // i.e. grsf_group
|
||||||
|
}else {
|
||||||
|
groups.add(getGroupId(Constants.SYSTEM_TYPE_LEGACY_RECORD)); // i.e. legacy_group
|
||||||
|
}
|
||||||
|
|
||||||
|
// evaluate the custom fields/tags, resources and groups
|
||||||
|
groups.add(getGroupId(productType.getOrigName())); //i.e. stock_group or fishery_group
|
||||||
|
|
||||||
|
for(String source : sourcesList) {
|
||||||
|
groups.add(getGroupId(source)); // i.e. firms_group, fishsource_group, ram_group
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
/**
|
/**
|
||||||
* Retrieve the list of groups' names for this object
|
* Retrieve the list of groups' names for this object
|
||||||
*/
|
*/
|
||||||
|
@ -226,74 +308,22 @@ public class CommonServiceUtils {
|
||||||
Sources source) {
|
Sources source) {
|
||||||
if(field.isAnnotationPresent(Group.class)) {
|
if(field.isAnnotationPresent(Group.class)) {
|
||||||
Group group = field.getAnnotation(Group.class);
|
Group group = field.getAnnotation(Group.class);
|
||||||
String conditionToCheck = group.condition();
|
|
||||||
String groupNameOverValue = group.groupNameOverValue();
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
// See https://support.d4science.org/issues/11832
|
|
||||||
boolean assessmentUnit = false;
|
|
||||||
boolean prependSource = group.prependSourceToGroupName();
|
|
||||||
if(record instanceof StockRecord) {
|
|
||||||
StockRecord stockRecord = (StockRecord) record;
|
|
||||||
Stock_Type stock_Type = stockRecord.getType();
|
|
||||||
if(stock_Type != Stock_Type.Assessment_Unit) {
|
|
||||||
prependSource = false;
|
|
||||||
}else {
|
|
||||||
assessmentUnit = true;
|
|
||||||
}
|
|
||||||
}
|
|
||||||
// end patch for https://support.d4science.org/issues/11832
|
|
||||||
|
|
||||||
try {
|
try {
|
||||||
Object f = new PropertyDescriptor(field.getName(), current).getReadMethod().invoke(record);
|
Object f = new PropertyDescriptor(field.getName(), current).getReadMethod().invoke(record);
|
||||||
if(f != null) {
|
if(f != null) {
|
||||||
if(f instanceof List<?>) {
|
if(f instanceof List<?>) {
|
||||||
List asList = ((List) f);
|
List asList = ((List) f);
|
||||||
if(!asList.isEmpty()) {
|
if(!asList.isEmpty()) {
|
||||||
|
|
||||||
logger.debug("The object annotated with @Group is a list. Adding ... ");
|
logger.debug("The object annotated with @Group is a list. Adding ... ");
|
||||||
|
// add all the available elements
|
||||||
// else add all the available elements
|
|
||||||
for(int i = 0; i < asList.size(); i++) {
|
for(int i = 0; i < asList.size(); i++) {
|
||||||
boolean match = conditionToCheck.isEmpty() ? true
|
String value = asList.get(i).toString().trim();
|
||||||
: asList.get(i).toString().trim().matches(conditionToCheck);
|
addGroup(group, source, value, groups);
|
||||||
if(match) {
|
|
||||||
String groupName = groupNameOverValue.isEmpty()
|
|
||||||
? HelperMethods.getGroupNameOnCkan(source.toString().toLowerCase() + "-"
|
|
||||||
+ asList.get(i).toString().trim())
|
|
||||||
: source.toString().toLowerCase() + "-" + groupNameOverValue;
|
|
||||||
if(assessmentUnit && !prependSource) {
|
|
||||||
groups.add(groupNameOverValue);
|
|
||||||
}else {
|
|
||||||
groups.add(groupName);
|
|
||||||
}
|
|
||||||
}
|
|
||||||
}
|
}
|
||||||
|
|
||||||
}
|
}
|
||||||
|
|
||||||
} else {
|
} else {
|
||||||
|
String value = f.toString().trim();
|
||||||
// also convert to the group name that should be on ckan
|
addGroup(group, source, value, groups);
|
||||||
boolean match = conditionToCheck.isEmpty() ? true
|
|
||||||
: f.toString().trim().matches(conditionToCheck);
|
|
||||||
if(match) {
|
|
||||||
|
|
||||||
String groupName = groupNameOverValue.isEmpty()
|
|
||||||
? HelperMethods.getGroupNameOnCkan(
|
|
||||||
source.toString().toLowerCase() + "-" + f.toString().trim())
|
|
||||||
: source.toString().toLowerCase() + "-" + groupNameOverValue;
|
|
||||||
|
|
||||||
if(assessmentUnit && !prependSource) {
|
|
||||||
groups.add(groupNameOverValue);
|
|
||||||
}else {
|
|
||||||
groups.add(groupName);
|
|
||||||
}
|
|
||||||
|
|
||||||
|
|
||||||
|
|
||||||
}
|
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
|
@ -301,7 +331,6 @@ public class CommonServiceUtils {
|
||||||
logger.error("Failed to read value for field " + field.getName() + " skipping", e);
|
logger.error("Failed to read value for field " + field.getName() + " skipping", e);
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
}
|
}
|
||||||
|
|
||||||
/**
|
/**
|
||||||
|
@ -485,7 +514,7 @@ public class CommonServiceUtils {
|
||||||
|
|
||||||
// validate the record if it is a GRSF one and set the record type and in manage context
|
// validate the record if it is a GRSF one and set the record type and in manage context
|
||||||
// Status field is needed only in the Manage context for GRSF records
|
// Status field is needed only in the Manage context for GRSF records
|
||||||
if(context.equals((String) contextServlet.getInitParameter(HelperMethods.MANAGE_CONTEX_KEY))) {
|
if( (context.equals((String) contextServlet.getInitParameter(HelperMethods.MANAGE_CONTEX_KEY))) || (context.equals((String) contextServlet.getInitParameter(HelperMethods.PREVALIDATE_CONTEX_KEY)))) {
|
||||||
if(sourceInPath.equals(Sources.GRSF)) {
|
if(sourceInPath.equals(Sources.GRSF)) {
|
||||||
|
|
||||||
List<RefersToBean> refersTo = record.getRefersTo();
|
List<RefersToBean> refersTo = record.getRefersTo();
|
||||||
|
@ -513,13 +542,13 @@ public class CommonServiceUtils {
|
||||||
if(databaseSources!=null) {
|
if(databaseSources!=null) {
|
||||||
for(Resource<Sources> source : databaseSources) {
|
for(Resource<Sources> source : databaseSources) {
|
||||||
Sources sourceName = source.getName();
|
Sources sourceName = source.getName();
|
||||||
sourcesList.add(sourceName.getOrigName().toLowerCase());
|
sourcesList.add(sourceName.getURLPath());
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
// append to groups: we need to add this record to the correspondent group of the sources
|
addRecordToGroups(groups, sourcesList, productType, sourceInPath);
|
||||||
addRecordToGroupSources(groups, new ArrayList(sourcesList), productType, sourceInPath);
|
|
||||||
|
|
||||||
// validate
|
// validate
|
||||||
CommonServiceUtils.validateAggregatedRecord(record, sourceInPath);
|
CommonServiceUtils.validateAggregatedRecord(record, sourceInPath);
|
||||||
|
@ -532,57 +561,41 @@ public class CommonServiceUtils {
|
||||||
sourceInPath.equals(Sources.GRSF)
|
sourceInPath.equals(Sources.GRSF)
|
||||||
? productType.equals(Product_Type.FISHERY) ? ((FisheryRecord) record).getType().getOrigName()
|
? productType.equals(Product_Type.FISHERY) ? ((FisheryRecord) record).getType().getOrigName()
|
||||||
: ((StockRecord) record).getType().getOrigName()
|
: ((StockRecord) record).getType().getOrigName()
|
||||||
: Constants.SYSTEM_TYPE_FOR_SOURCES_VALUE);
|
: Constants.SYSTEM_TYPE_LEGACY_RECORD);
|
||||||
|
|
||||||
logger.debug("Domain is " + productType.getOrigName() + " and system type " + record.getSystemType());
|
logger.debug("Domain is " + productType.getOrigName() + " and system type " + record.getSystemType());
|
||||||
|
|
||||||
// evaluate the custom fields/tags, resources and groups
|
|
||||||
groups.add(sourceInPath.getOrigName().toLowerCase() + "-" + productType.getOrigName().toLowerCase()); //e.g. grsf-fishery
|
/*
|
||||||
boolean skipTags = !sourceInPath.equals(Sources.GRSF); // no tags for the Original records
|
* It has been decided to add tags also for legacy records see #23216
|
||||||
CommonServiceUtils.getTagsGroupsResourcesExtrasByRecord(tags, skipTags, groups, false, resources, false,
|
* boolean skipTags = !sourceInPath.equals(Sources.GRSF); // no tags for the Original records
|
||||||
|
*/
|
||||||
|
CommonServiceUtils.getTagsGroupsResourcesExtrasByRecord(tags, false, groups, false, resources, false,
|
||||||
customFields, record, username, sourceInPath);
|
customFields, record, username, sourceInPath);
|
||||||
|
|
||||||
}
|
}
|
||||||
|
|
||||||
/**
|
// /**
|
||||||
* Add the record to the group of sources
|
// * Fetch the system:type property from a record
|
||||||
* @param groups
|
// * @param itemIdOrName
|
||||||
* @param sourcesList
|
// * @param apiKey
|
||||||
* @param productType
|
// * @return null on error
|
||||||
* @param sourceInPath
|
// * @throws Exception
|
||||||
*/
|
// */
|
||||||
private static void addRecordToGroupSources(Set<String> groups, List<String> sourcesList, Product_Type productType,
|
// public static String getSystemTypeValue(String itemIdOrName, String apiKey, String context) throws Exception {
|
||||||
Sources sourceInPath) {
|
// DataCatalogue catalog = HelperMethods.getDataCatalogueRunningInstance(context);
|
||||||
|
// CkanDataset dataset = catalog.getDataset(itemIdOrName, apiKey);
|
||||||
Collections.sort(sourcesList); // be sure the name are sorted because the groups have been generated this way
|
// if(dataset == null) {
|
||||||
String groupName = sourceInPath.getOrigName().toLowerCase() + "-" + productType.getOrigName().toLowerCase();
|
// throw new Exception("Unable to find record with id or name " + itemIdOrName);
|
||||||
for(String source : sourcesList) {
|
// }
|
||||||
groupName += "-" + source;
|
// String systemTypeValue = dataset.getExtrasAsHashMap().get(Constants.SYSTEM_TYPE_CUSTOM_KEY);
|
||||||
}
|
// if(systemTypeValue == null || systemTypeValue.isEmpty()) {
|
||||||
|
// throw new Exception(Constants.SYSTEM_TYPE_CUSTOM_KEY + " property not set in record " + itemIdOrName);
|
||||||
groups.add(groupName);
|
// }else {
|
||||||
}
|
// return systemTypeValue;
|
||||||
|
// }
|
||||||
/**
|
//
|
||||||
* Fetch the system:type property from a record
|
// }
|
||||||
* @param itemIdOrName
|
|
||||||
* @param apiKey
|
|
||||||
* @return null on error
|
|
||||||
* @throws Exception
|
|
||||||
*/
|
|
||||||
public static String getSystemTypeValue(String itemIdOrName, String apiKey, String context) throws Exception {
|
|
||||||
|
|
||||||
DataCatalogue catalog = HelperMethods.getDataCatalogueRunningInstance(context);
|
|
||||||
CkanDataset dataset = catalog.getDataset(itemIdOrName, apiKey);
|
|
||||||
if(dataset == null)
|
|
||||||
throw new Exception("Unable to find record with id or name " + itemIdOrName);
|
|
||||||
String systemTypeValue = dataset.getExtrasAsHashMap().get(Constants.SYSTEM_TYPE_CUSTOM_KEY);
|
|
||||||
if(systemTypeValue == null || systemTypeValue.isEmpty())
|
|
||||||
throw new Exception(Constants.SYSTEM_TYPE_CUSTOM_KEY + " property not set in record " + itemIdOrName);
|
|
||||||
else
|
|
||||||
return systemTypeValue;
|
|
||||||
|
|
||||||
}
|
|
||||||
|
|
||||||
public static String getRecordOrganization(String itemIdOrName, String apiKey, String context) throws Exception {
|
public static String getRecordOrganization(String itemIdOrName, String apiKey, String context) throws Exception {
|
||||||
DataCatalogue catalog = HelperMethods.getDataCatalogueRunningInstance(context);
|
DataCatalogue catalog = HelperMethods.getDataCatalogueRunningInstance(context);
|
||||||
|
@ -697,9 +710,14 @@ public class CommonServiceUtils {
|
||||||
* @return
|
* @return
|
||||||
*/
|
*/
|
||||||
public static String evaluateOrganization(String organization, Sources sourceInPath) {
|
public static String evaluateOrganization(String organization, Sources sourceInPath) {
|
||||||
if(sourceInPath.equals(Sources.GRSF) && organization.equals(Constants.GRSF_ADMIN_ORGANIZATION_NAME))
|
if(sourceInPath.equals(Sources.GRSF) &&
|
||||||
return Constants.GRSF_ADMIN_ORGANIZATION_NAME;
|
(organization.compareTo(Constants.GRSF_ADMIN_ORGANIZATION_NAME)==0 || organization.compareTo(Constants.GRSF_PRE_ORGANIZATION_NAME)==0)){
|
||||||
else
|
if(organization.compareTo(Constants.GRSF_ADMIN_ORGANIZATION_NAME)==0) {
|
||||||
return sourceInPath.getOrigName().toLowerCase();
|
return Constants.GRSF_ADMIN_ORGANIZATION_NAME;
|
||||||
|
}else {
|
||||||
|
return Constants.GRSF_PRE_ORGANIZATION_NAME;
|
||||||
|
}
|
||||||
|
}else
|
||||||
|
return sourceInPath.getURLPath();
|
||||||
}
|
}
|
||||||
}
|
}
|
|
@ -5,7 +5,6 @@ import static org.gcube.resources.discovery.icclient.ICFactory.client;
|
||||||
import java.io.BufferedReader;
|
import java.io.BufferedReader;
|
||||||
import java.io.File;
|
import java.io.File;
|
||||||
import java.io.FileInputStream;
|
import java.io.FileInputStream;
|
||||||
import java.io.FileNotFoundException;
|
|
||||||
import java.io.InputStream;
|
import java.io.InputStream;
|
||||||
import java.io.InputStreamReader;
|
import java.io.InputStreamReader;
|
||||||
import java.io.StringReader;
|
import java.io.StringReader;
|
||||||
|
@ -20,15 +19,11 @@ import javax.xml.parsers.DocumentBuilder;
|
||||||
import javax.xml.parsers.DocumentBuilderFactory;
|
import javax.xml.parsers.DocumentBuilderFactory;
|
||||||
|
|
||||||
import org.gcube.common.authorization.library.provider.SecurityTokenProvider;
|
import org.gcube.common.authorization.library.provider.SecurityTokenProvider;
|
||||||
import org.gcube.common.homelibrary.home.exceptions.InternalErrorException;
|
|
||||||
import org.gcube.common.homelibrary.home.workspace.WorkspaceFolder;
|
|
||||||
import org.gcube.common.homelibrary.home.workspace.WorkspaceItem;
|
|
||||||
import org.gcube.common.homelibrary.home.workspace.exceptions.InsufficientPrivilegesException;
|
|
||||||
import org.gcube.common.homelibrary.home.workspace.exceptions.ItemAlreadyExistException;
|
|
||||||
import org.gcube.common.homelibrary.home.workspace.exceptions.ItemNotFoundException;
|
|
||||||
import org.gcube.common.homelibrary.home.workspace.folder.items.ExternalFile;
|
|
||||||
import org.gcube.common.resources.gcore.utils.XPathHelper;
|
import org.gcube.common.resources.gcore.utils.XPathHelper;
|
||||||
import org.gcube.common.scope.api.ScopeProvider;
|
import org.gcube.common.scope.api.ScopeProvider;
|
||||||
|
import org.gcube.common.storagehub.client.dsl.FileContainer;
|
||||||
|
import org.gcube.common.storagehub.client.dsl.FolderContainer;
|
||||||
|
import org.gcube.common.storagehub.model.exceptions.StorageHubException;
|
||||||
import org.gcube.datacatalogue.ckanutillibrary.server.DataCatalogue;
|
import org.gcube.datacatalogue.ckanutillibrary.server.DataCatalogue;
|
||||||
import org.gcube.datacatalogue.ckanutillibrary.server.DataCatalogueFactory;
|
import org.gcube.datacatalogue.ckanutillibrary.server.DataCatalogueFactory;
|
||||||
import org.gcube.datacatalogue.common.caches.CacheImpl;
|
import org.gcube.datacatalogue.common.caches.CacheImpl;
|
||||||
|
@ -36,6 +31,7 @@ import org.gcube.datacatalogue.common.caches.CacheInterface;
|
||||||
import org.gcube.resources.discovery.client.api.DiscoveryClient;
|
import org.gcube.resources.discovery.client.api.DiscoveryClient;
|
||||||
import org.gcube.resources.discovery.client.queries.api.Query;
|
import org.gcube.resources.discovery.client.queries.api.Query;
|
||||||
import org.gcube.resources.discovery.client.queries.impl.QueryBox;
|
import org.gcube.resources.discovery.client.queries.impl.QueryBox;
|
||||||
|
import org.gcube.social_networking.social_networking_client_library.UserClient;
|
||||||
import org.jsoup.Jsoup;
|
import org.jsoup.Jsoup;
|
||||||
import org.jsoup.safety.Whitelist;
|
import org.jsoup.safety.Whitelist;
|
||||||
import org.slf4j.LoggerFactory;
|
import org.slf4j.LoggerFactory;
|
||||||
|
@ -72,9 +68,12 @@ public abstract class HelperMethods {
|
||||||
|
|
||||||
// to be retrieved from the web.xml
|
// to be retrieved from the web.xml
|
||||||
public static final String MANAGE_CONTEX_KEY = "ManageVRE";
|
public static final String MANAGE_CONTEX_KEY = "ManageVRE";
|
||||||
|
public static final String PREVALIDATE_CONTEX_KEY = "PreValidateVRE";
|
||||||
public static final String PUBLIC_CONTEX_KEY = "PublicVRE";
|
public static final String PUBLIC_CONTEX_KEY = "PublicVRE";
|
||||||
private static final String CSV_MIME = "text/csv";
|
|
||||||
private static final String PATH_SEPARATOR = "/";
|
private static final String PATH_SEPARATOR = "/";
|
||||||
|
|
||||||
|
// This key is used in replaceFieldsKey() function to indicate to remove the metadata field
|
||||||
|
private static final String NONE_KEY = "none:none";
|
||||||
|
|
||||||
// caches
|
// caches
|
||||||
private static CacheInterface<String, String> userEmailCache = new CacheImpl<String, String>(1000 * 60 * 60 * 24);
|
private static CacheInterface<String, String> userEmailCache = new CacheImpl<String, String>(1000 * 60 * 60 * 24);
|
||||||
|
@ -82,27 +81,6 @@ public abstract class HelperMethods {
|
||||||
private static CacheInterface<String, Map<String, String>> namespacesCache = new CacheImpl<String, Map<String, String>>(1000 * 60 * 60 * 24);
|
private static CacheInterface<String, Map<String, String>> namespacesCache = new CacheImpl<String, Map<String, String>>(1000 * 60 * 60 * 24);
|
||||||
private static CacheInterface<String, DataCatalogue> catalogueCache = new CacheImpl<String, DataCatalogue>(1000 * 60 * 60 * 24);
|
private static CacheInterface<String, DataCatalogue> catalogueCache = new CacheImpl<String, DataCatalogue>(1000 * 60 * 60 * 24);
|
||||||
|
|
||||||
/**
|
|
||||||
* Convert a group name to its id on ckan
|
|
||||||
* @param origName
|
|
||||||
* @return
|
|
||||||
*/
|
|
||||||
public static String getGroupNameOnCkan(String origName){
|
|
||||||
|
|
||||||
if(origName == null)
|
|
||||||
throw new IllegalArgumentException("origName cannot be null");
|
|
||||||
|
|
||||||
String modified = origName.trim().toLowerCase().replaceAll("[^A-Za-z0-9-]", "-");
|
|
||||||
if(modified.startsWith("-"))
|
|
||||||
modified = modified.substring(1);
|
|
||||||
if(modified.endsWith("-"))
|
|
||||||
modified = modified.substring(0, modified.length() -1);
|
|
||||||
|
|
||||||
logger.info("Group name generated is " + modified);
|
|
||||||
|
|
||||||
return modified;
|
|
||||||
}
|
|
||||||
|
|
||||||
/**
|
/**
|
||||||
* Retrieve the running instance of the data catalogue for this scope
|
* Retrieve the running instance of the data catalogue for this scope
|
||||||
* @return
|
* @return
|
||||||
|
@ -157,21 +135,18 @@ public abstract class HelperMethods {
|
||||||
* @return
|
* @return
|
||||||
* @throws Exception
|
* @throws Exception
|
||||||
*/
|
*/
|
||||||
public static String getUserEmail(String context, String token){
|
public static String getUserEmail(String context, String token) throws Exception{
|
||||||
|
|
||||||
// check in cache
|
// check in cache
|
||||||
String result = null;
|
String email = null;
|
||||||
if((result = (String) userEmailCache.get(token)) != null){
|
if((email = (String) userEmailCache.get(token)) != null){
|
||||||
return result;
|
return email;
|
||||||
}else{
|
}else{
|
||||||
String baseUrl = new GcoreEndPointReaderSocial(context).getBasePath();
|
UserClient userClient = new UserClient();
|
||||||
String url = baseUrl.endsWith("/") ? baseUrl + "users/getUserEmail?gcube-token=" + token :
|
email = userClient.getEmail();
|
||||||
baseUrl + "/users/getUserEmail?gcube-token=" + token;
|
userEmailCache.insert(token, email);
|
||||||
logger.debug("Request url is " + url);
|
|
||||||
result = executGETHttpRequest(url, 200);
|
|
||||||
userEmailCache.insert(token, result);
|
|
||||||
}
|
}
|
||||||
return result;
|
return email;
|
||||||
}
|
}
|
||||||
|
|
||||||
/**
|
/**
|
||||||
|
@ -181,21 +156,18 @@ public abstract class HelperMethods {
|
||||||
* @return
|
* @return
|
||||||
* @throws Exception
|
* @throws Exception
|
||||||
*/
|
*/
|
||||||
public static String getUserFullname(String context, String token){
|
public static String getUserFullname(String context, String token) throws Exception{
|
||||||
|
|
||||||
// check in cache
|
// check in cache
|
||||||
String result = null;
|
String fullName = null;
|
||||||
if((result = (String) userFullnameCache.get(token)) != null){
|
if((fullName = (String) userFullnameCache.get(token)) != null){
|
||||||
return result;
|
return fullName;
|
||||||
}else{
|
}else{
|
||||||
String baseUrl = new GcoreEndPointReaderSocial(context).getBasePath();
|
UserClient userClient = new UserClient();
|
||||||
String url = baseUrl.endsWith("/") ? baseUrl + "users/getUserFullname?gcube-token=" + token :
|
fullName = userClient.getFullName();
|
||||||
baseUrl + "/users/getUserFullname?gcube-token=" + token;
|
userFullnameCache.insert(token, fullName);
|
||||||
logger.debug("Request url is " + url);
|
|
||||||
result = executGETHttpRequest(url, 200);
|
|
||||||
userFullnameCache.insert(token, result);
|
|
||||||
}
|
}
|
||||||
return result;
|
return fullName;
|
||||||
}
|
}
|
||||||
|
|
||||||
/**
|
/**
|
||||||
|
@ -257,29 +229,20 @@ public abstract class HelperMethods {
|
||||||
* @param csvFile
|
* @param csvFile
|
||||||
* @return
|
* @return
|
||||||
*/
|
*/
|
||||||
public static ExternalFile uploadExternalFile(WorkspaceFolder resourceFormatFolder, String resourceToAttachName, String description, File csvFile) {
|
public static FileContainer uploadExternalFile(FolderContainer resourceFormatFolder, String resourceToAttachName, String description, File csvFile) {
|
||||||
try {
|
try {
|
||||||
|
|
||||||
|
try (InputStream is= new FileInputStream(csvFile)) {
|
||||||
|
FileContainer fileContainer = resourceFormatFolder.uploadFile(is , resourceToAttachName, description);
|
||||||
|
return fileContainer;
|
||||||
|
}
|
||||||
|
|
||||||
WorkspaceItem existsFile = resourceFormatFolder.find(resourceToAttachName);
|
} catch (StorageHubException she) {
|
||||||
|
logger.error("Failed to upload the file into the workspace shared folder for " + resourceToAttachName, she);
|
||||||
if(existsFile == null)
|
} catch (Exception e) {
|
||||||
return resourceFormatFolder.createExternalFileItem(resourceToAttachName, description, CSV_MIME, csvFile);
|
|
||||||
else{
|
|
||||||
InputStream targetStream = new FileInputStream(csvFile);
|
|
||||||
existsFile.updateItem(targetStream);
|
|
||||||
return (ExternalFile)existsFile;
|
|
||||||
}
|
|
||||||
|
|
||||||
} catch (InsufficientPrivilegesException | ItemAlreadyExistException
|
|
||||||
| InternalErrorException e) {
|
|
||||||
logger.error("Failed to upload the file into the workspace shared folder for " + resourceToAttachName, e);
|
|
||||||
} catch (FileNotFoundException e) {
|
|
||||||
// TODO Auto-generated catch block
|
// TODO Auto-generated catch block
|
||||||
e.printStackTrace();
|
e.printStackTrace();
|
||||||
} catch (ItemNotFoundException e) {
|
}
|
||||||
// TODO Auto-generated catch block
|
|
||||||
e.printStackTrace();
|
|
||||||
}
|
|
||||||
return null;
|
return null;
|
||||||
}
|
}
|
||||||
|
|
||||||
|
@ -290,9 +253,10 @@ public abstract class HelperMethods {
|
||||||
* @param subPath
|
* @param subPath
|
||||||
* @return null if an error occurred
|
* @return null if an error occurred
|
||||||
*/
|
*/
|
||||||
public static WorkspaceFolder createOrGetSubFoldersByPath(WorkspaceFolder folder, String subPath){
|
public static FolderContainer createOrGetSubFoldersByPath(FolderContainer folder, String subPath){
|
||||||
|
|
||||||
WorkspaceFolder parentFolder = folder;
|
FolderContainer parentFolder = folder;
|
||||||
|
|
||||||
if(folder == null)
|
if(folder == null)
|
||||||
throw new IllegalArgumentException("Root folder is null!");
|
throw new IllegalArgumentException("Root folder is null!");
|
||||||
|
|
||||||
|
@ -311,8 +275,9 @@ public abstract class HelperMethods {
|
||||||
String[] splittedPaths = subPath.split(PATH_SEPARATOR);
|
String[] splittedPaths = subPath.split(PATH_SEPARATOR);
|
||||||
|
|
||||||
for (String path : splittedPaths) {
|
for (String path : splittedPaths) {
|
||||||
WorkspaceFolder createdFolder = getFolderOrCreate(parentFolder, path, "");
|
|
||||||
logger.debug("Created subfolder with path " + createdFolder.getPath());
|
FolderContainer createdFolder = getFolderOrCreate(parentFolder, path, "");
|
||||||
|
logger.debug("Created subfolder with path " + createdFolder.get().getPath());
|
||||||
parentFolder = createdFolder;
|
parentFolder = createdFolder;
|
||||||
}
|
}
|
||||||
|
|
||||||
|
@ -328,23 +293,18 @@ public abstract class HelperMethods {
|
||||||
* Get a folder within the catalogue folder or create it if it doesn't exist.
|
* Get a folder within the catalogue folder or create it if it doesn't exist.
|
||||||
* @return
|
* @return
|
||||||
*/
|
*/
|
||||||
public static WorkspaceFolder getFolderOrCreate(WorkspaceFolder folder, String relativePath, String descriptionFolder){
|
public static FolderContainer getFolderOrCreate(FolderContainer folder, String relativePath, String descriptionFolder){
|
||||||
WorkspaceFolder result = null;
|
|
||||||
|
FolderContainer result = null;
|
||||||
try {
|
try {
|
||||||
WorkspaceItem foundFolder = folder.find(relativePath);
|
result = folder.openByRelativePath(relativePath).asFolder();
|
||||||
if(foundFolder != null && foundFolder.isFolder())
|
|
||||||
result = (WorkspaceFolder)foundFolder;
|
|
||||||
|
|
||||||
if(result != null)
|
|
||||||
logger.debug("Folder found with name " + result.getName() + ", it has id " + result.getId());
|
|
||||||
else
|
|
||||||
throw new Exception("There is no folder with name " + relativePath + " under folder " + folder.getName());
|
|
||||||
} catch (Exception e) {
|
} catch (Exception e) {
|
||||||
logger.debug("Probably the folder doesn't exist");
|
logger.debug("Probably the folder doesn't exist");
|
||||||
try{
|
try{
|
||||||
result = folder.createFolder(relativePath, descriptionFolder);
|
result = folder.newFolder(relativePath, descriptionFolder);
|
||||||
} catch (InsufficientPrivilegesException | InternalErrorException | ItemAlreadyExistException e2) {
|
} catch (StorageHubException se) {
|
||||||
logger.error("Failed to get or generate this folder", e2);
|
logger.error("Failed to get or generate this folder", se);
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
return result;
|
return result;
|
||||||
|
@ -588,16 +548,18 @@ public abstract class HelperMethods {
|
||||||
|
|
||||||
if(namespaces.containsKey(entry.getKey())){
|
if(namespaces.containsKey(entry.getKey())){
|
||||||
usedKey = namespaces.get(entry.getKey());
|
usedKey = namespaces.get(entry.getKey());
|
||||||
}
|
} else{
|
||||||
else{
|
|
||||||
usedKey = entry.getKey();
|
usedKey = entry.getKey();
|
||||||
}
|
}
|
||||||
|
|
||||||
if(isSourceRecord)
|
if(isSourceRecord) {
|
||||||
usedKey = usedKey.replace("GRSF", "").trim();
|
usedKey = usedKey.replace("GRSF", "").trim();
|
||||||
|
}
|
||||||
|
|
||||||
toReturn.put(usedKey, entry.getValue());
|
// When the replaced key is none the metadata field must be removed
|
||||||
|
if(usedKey.compareTo(NONE_KEY)!=0) {
|
||||||
|
toReturn.put(usedKey, entry.getValue());
|
||||||
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
return toReturn;
|
return toReturn;
|
||||||
|
|
|
@ -1,6 +1,5 @@
|
||||||
package org.gcube.data_catalogue.grsf_publish_ws.utils.csv;
|
package org.gcube.data_catalogue.grsf_publish_ws.utils.csv;
|
||||||
|
|
||||||
import java.beans.IntrospectionException;
|
|
||||||
import java.beans.PropertyDescriptor;
|
import java.beans.PropertyDescriptor;
|
||||||
import java.io.File;
|
import java.io.File;
|
||||||
import java.lang.reflect.Field;
|
import java.lang.reflect.Field;
|
||||||
|
@ -8,18 +7,11 @@ import java.lang.reflect.InvocationTargetException;
|
||||||
import java.util.List;
|
import java.util.List;
|
||||||
|
|
||||||
import org.gcube.common.authorization.library.provider.SecurityTokenProvider;
|
import org.gcube.common.authorization.library.provider.SecurityTokenProvider;
|
||||||
import org.gcube.common.homelibrary.home.HomeLibrary;
|
|
||||||
import org.gcube.common.homelibrary.home.exceptions.HomeNotFoundException;
|
|
||||||
import org.gcube.common.homelibrary.home.exceptions.InternalErrorException;
|
|
||||||
import org.gcube.common.homelibrary.home.exceptions.UserNotFoundException;
|
|
||||||
import org.gcube.common.homelibrary.home.workspace.Workspace;
|
|
||||||
import org.gcube.common.homelibrary.home.workspace.WorkspaceFolder;
|
|
||||||
import org.gcube.common.homelibrary.home.workspace.WorkspaceSharedFolder;
|
|
||||||
import org.gcube.common.homelibrary.home.workspace.catalogue.WorkspaceCatalogue;
|
|
||||||
import org.gcube.common.homelibrary.home.workspace.exceptions.ItemNotFoundException;
|
|
||||||
import org.gcube.common.homelibrary.home.workspace.exceptions.WorkspaceFolderNotFoundException;
|
|
||||||
import org.gcube.common.homelibrary.home.workspace.folder.items.ExternalFile;
|
|
||||||
import org.gcube.common.scope.api.ScopeProvider;
|
import org.gcube.common.scope.api.ScopeProvider;
|
||||||
|
import org.gcube.common.storagehub.client.dsl.FileContainer;
|
||||||
|
import org.gcube.common.storagehub.client.dsl.FolderContainer;
|
||||||
|
import org.gcube.common.storagehub.client.dsl.StorageHubClient;
|
||||||
|
import org.gcube.common.storagehub.model.exceptions.StorageHubException;
|
||||||
import org.gcube.data_catalogue.grsf_publish_ws.custom_annotations.CustomField;
|
import org.gcube.data_catalogue.grsf_publish_ws.custom_annotations.CustomField;
|
||||||
import org.gcube.data_catalogue.grsf_publish_ws.custom_annotations.TimeSeries;
|
import org.gcube.data_catalogue.grsf_publish_ws.custom_annotations.TimeSeries;
|
||||||
import org.gcube.data_catalogue.grsf_publish_ws.json.input.record.Common;
|
import org.gcube.data_catalogue.grsf_publish_ws.json.input.record.Common;
|
||||||
|
@ -42,13 +34,15 @@ public class ManageTimeSeriesThread extends Thread{
|
||||||
|
|
||||||
private static final String PATH_SEPARATOR = "/";
|
private static final String PATH_SEPARATOR = "/";
|
||||||
|
|
||||||
|
private static final String CATALOGUE_FOLDER = ".catalogue";
|
||||||
|
|
||||||
// Logger
|
// Logger
|
||||||
private static final org.slf4j.Logger logger = LoggerFactory.getLogger(ManageTimeSeriesThread.class);
|
private static final org.slf4j.Logger logger = LoggerFactory.getLogger(ManageTimeSeriesThread.class);
|
||||||
|
|
||||||
// try to attach the source at most CHANCES times ..
|
// try to attach the source at most CHANCES times ..
|
||||||
private static final int CHANCES = 10;
|
private static final int CHANCES = 10;
|
||||||
|
|
||||||
private static CacheInterface<String, WorkspaceCatalogue> vreFolderCache = new CacheImpl<String, WorkspaceCatalogue>(1000 * 60 * 60 * 24);
|
private static CacheInterface<String, FolderContainer> vreFolderCache = new CacheImpl<String, FolderContainer>(1000 * 60 * 60 * 24);
|
||||||
|
|
||||||
private static final int MAX_NAME_CSV_FILE_WITHOUT_MEASURE = 50;
|
private static final int MAX_NAME_CSV_FILE_WITHOUT_MEASURE = 50;
|
||||||
|
|
||||||
|
@ -96,17 +90,7 @@ public class ManageTimeSeriesThread extends Thread{
|
||||||
logger.error("Error was " + e.getMessage());
|
logger.error("Error was " + e.getMessage());
|
||||||
} catch (InvocationTargetException e) {
|
} catch (InvocationTargetException e) {
|
||||||
logger.error("Error was " + e.getMessage());
|
logger.error("Error was " + e.getMessage());
|
||||||
} catch (WorkspaceFolderNotFoundException e) {
|
} catch (StorageHubException e) {
|
||||||
logger.error("Error was " + e.getMessage());
|
|
||||||
} catch (ItemNotFoundException e) {
|
|
||||||
logger.error("Error was " + e.getMessage());
|
|
||||||
} catch (IntrospectionException e) {
|
|
||||||
logger.error("Error was " + e.getMessage());
|
|
||||||
} catch (InternalErrorException e) {
|
|
||||||
logger.error("Error was " + e.getMessage());
|
|
||||||
} catch (HomeNotFoundException e) {
|
|
||||||
logger.error("Error was " + e.getMessage());
|
|
||||||
} catch (UserNotFoundException e) {
|
|
||||||
logger.error("Error was " + e.getMessage());
|
logger.error("Error was " + e.getMessage());
|
||||||
} catch (Exception e) {
|
} catch (Exception e) {
|
||||||
logger.error("Error was " + e.getMessage());
|
logger.error("Error was " + e.getMessage());
|
||||||
|
@ -130,17 +114,26 @@ public class ManageTimeSeriesThread extends Thread{
|
||||||
if(record == null)
|
if(record == null)
|
||||||
throw new IllegalArgumentException("The given record is null!!");
|
throw new IllegalArgumentException("The given record is null!!");
|
||||||
|
|
||||||
|
StorageHubClient shClient = new StorageHubClient();
|
||||||
|
|
||||||
String token = SecurityTokenProvider.instance.get();
|
String token = SecurityTokenProvider.instance.get();
|
||||||
|
|
||||||
WorkspaceCatalogue catalogueFolder = null;
|
FolderContainer catalogueFolder = null;
|
||||||
|
|
||||||
|
//WorkspaceCatalogue catalogueFolder = null;
|
||||||
if((catalogueFolder = vreFolderCache.get(token)) == null){
|
if((catalogueFolder = vreFolderCache.get(token)) == null){
|
||||||
Workspace ws = HomeLibrary.getHomeManagerFactory().getHomeManager().getHome().getWorkspace();
|
//Workspace ws = HomeLibrary.getHomeManagerFactory().getHomeManager().getHome().getWorkspace();
|
||||||
WorkspaceSharedFolder vreFolder = ws.getVREFolderByScope(ScopeProvider.instance.get());
|
FolderContainer vreFolder = shClient.openVREFolder();
|
||||||
catalogueFolder = vreFolder.getVRECatalogue();
|
try {
|
||||||
|
catalogueFolder = vreFolder.openByRelativePath(CATALOGUE_FOLDER).asFolder();
|
||||||
|
}catch (StorageHubException e) {
|
||||||
|
catalogueFolder = vreFolder.newHiddenFolder(CATALOGUE_FOLDER, "catalogue folder");
|
||||||
|
}
|
||||||
|
|
||||||
vreFolderCache.insert(token, catalogueFolder);
|
vreFolderCache.insert(token, catalogueFolder);
|
||||||
}
|
}
|
||||||
|
|
||||||
logger.debug("Catalogue folder in vre has path " + catalogueFolder.getPath());
|
logger.debug("Catalogue folder in vre has path " + catalogueFolder.get().getPath());
|
||||||
|
|
||||||
// the structure under the .catalogue will be as follows:
|
// the structure under the .catalogue will be as follows:
|
||||||
// .catalogue:
|
// .catalogue:
|
||||||
|
@ -167,7 +160,7 @@ public class ManageTimeSeriesThread extends Thread{
|
||||||
// the whole path of the directory is going to be...
|
// the whole path of the directory is going to be...
|
||||||
String csvDirectoryForThisProduct = recordTypeFolderName + PATH_SEPARATOR + firstLetter + PATH_SEPARATOR + replaceIllegalChars(uuidKB, "_") + PATH_SEPARATOR + CSVUtils.CSV_EXTENSION.replace(".", "");
|
String csvDirectoryForThisProduct = recordTypeFolderName + PATH_SEPARATOR + firstLetter + PATH_SEPARATOR + replaceIllegalChars(uuidKB, "_") + PATH_SEPARATOR + CSVUtils.CSV_EXTENSION.replace(".", "");
|
||||||
logger.debug("The path under which the time series are going to be saved is " + csvDirectoryForThisProduct);
|
logger.debug("The path under which the time series are going to be saved is " + csvDirectoryForThisProduct);
|
||||||
WorkspaceFolder csvFolder = HelperMethods.createOrGetSubFoldersByPath(catalogueFolder, csvDirectoryForThisProduct);
|
FolderContainer csvFolder = HelperMethods.createOrGetSubFoldersByPath(catalogueFolder, csvDirectoryForThisProduct);
|
||||||
|
|
||||||
if(csvFolder == null)
|
if(csvFolder == null)
|
||||||
logger.error("Failed to create directory where csv files will be deployed in the workspace!!");
|
logger.error("Failed to create directory where csv files will be deployed in the workspace!!");
|
||||||
|
@ -192,7 +185,7 @@ public class ManageTimeSeriesThread extends Thread{
|
||||||
String resourceToAttachOnCkanDescription = productName;
|
String resourceToAttachOnCkanDescription = productName;
|
||||||
|
|
||||||
CkanResourceBase ckanResource = null;
|
CkanResourceBase ckanResource = null;
|
||||||
ExternalFile createdFileOnWorkspace = null;
|
FileContainer createdFileOnWorkspace = null;
|
||||||
String[] relevantSources = new String[1];
|
String[] relevantSources = new String[1];
|
||||||
File csvFile = CSVUtils.listToCSV(asList, relevantSources);
|
File csvFile = CSVUtils.listToCSV(asList, relevantSources);
|
||||||
if(csvFile != null){
|
if(csvFile != null){
|
||||||
|
@ -212,7 +205,7 @@ public class ManageTimeSeriesThread extends Thread{
|
||||||
+ customAnnotation.key() + CSVUtils.CSV_EXTENSION, resourceToAttachOnCkanDescription, csvFile);
|
+ customAnnotation.key() + CSVUtils.CSV_EXTENSION, resourceToAttachOnCkanDescription, csvFile);
|
||||||
|
|
||||||
if(createdFileOnWorkspace != null){
|
if(createdFileOnWorkspace != null){
|
||||||
String publicUrlToSetOnCkan = createdFileOnWorkspace.getPublicLink(true);
|
String publicUrlToSetOnCkan = createdFileOnWorkspace.getPublicLink().toString();
|
||||||
|
|
||||||
// wait for patching..
|
// wait for patching..
|
||||||
Thread.sleep(1500);
|
Thread.sleep(1500);
|
||||||
|
|
|
@ -0,0 +1,94 @@
|
||||||
|
<Resource version="0.4.x">
|
||||||
|
<ID>85480b75-62f5-4708-acd9-382b22cffc90</ID>
|
||||||
|
<Type>GenericResource</Type>
|
||||||
|
<Scopes>
|
||||||
|
<Scope>/d4science.research-infrastructures.eu/FARM/GRSF</Scope>
|
||||||
|
</Scopes>
|
||||||
|
<Profile>
|
||||||
|
<SecondaryType>ApplicationProfile</SecondaryType>
|
||||||
|
<Name>GRSF Fishery</Name>
|
||||||
|
<Description>GRSF mapping between fields and namespaces for Fishery
|
||||||
|
records</Description>
|
||||||
|
<Body>
|
||||||
|
<fields>
|
||||||
|
<field>
|
||||||
|
<originalKey>Data Owner</originalKey>
|
||||||
|
<modifiedKey>none:none</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Database Source</originalKey>
|
||||||
|
<modifiedKey>fishery_identity:Database Source</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Short Name</originalKey>
|
||||||
|
<modifiedKey>fishery_identity:Short Name</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Catch</originalKey>
|
||||||
|
<modifiedKey>none:none</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Landing</originalKey>
|
||||||
|
<modifiedKey>none:none</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Species</originalKey>
|
||||||
|
<modifiedKey>fishery_identity:Species</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Similar GRSF Record</originalKey>
|
||||||
|
<modifiedKey>fishery_identity:Similar GRSF Record</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Management Body/Authority</originalKey>
|
||||||
|
<modifiedKey>fishery_identity:Management Body/Authority</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Connected Record</originalKey>
|
||||||
|
<modifiedKey>fishery_identity:Connected Record</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Annotation</originalKey>
|
||||||
|
<modifiedKey>none:none</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>GRSF Fishery Name</originalKey>
|
||||||
|
<modifiedKey>fishery_identity:GRSF Fishery Name</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>GRSF Semantic Identifier</originalKey>
|
||||||
|
<modifiedKey>fishery_identity:GRSF Semantic Identifier
|
||||||
|
</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Traceability Flag</originalKey>
|
||||||
|
<modifiedKey>fishery_identity:Traceability Flag</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Fishing Area</originalKey>
|
||||||
|
<modifiedKey>fishery_identity:Fishing Area</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Jurisdiction Area</originalKey>
|
||||||
|
<modifiedKey>fishery_identity:Jurisdiction Area</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Resources Exploited</originalKey>
|
||||||
|
<modifiedKey>fishery_identity:Resources Exploited</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Flag State</originalKey>
|
||||||
|
<modifiedKey>fishery_identity:Flag State</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Fishing Gear</originalKey>
|
||||||
|
<modifiedKey>fishery_identity:Fishing Gear</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>GRSF Type</originalKey>
|
||||||
|
<modifiedKey>fishery_identity:GRSF Type</modifiedKey>
|
||||||
|
</field>
|
||||||
|
</fields>
|
||||||
|
</Body>
|
||||||
|
</Profile>
|
||||||
|
</Resource>
|
|
@ -0,0 +1,91 @@
|
||||||
|
<Resource version="0.4.x">
|
||||||
|
<ID>c3326373-c620-45e8-a7e3-a25a1a2a970b</ID>
|
||||||
|
<Type>GenericResource</Type>
|
||||||
|
<Scopes>
|
||||||
|
<Scope>/d4science.research-infrastructures.eu/FARM/GRSF_Admin</Scope>
|
||||||
|
<Scope>/d4science.research-infrastructures.eu/FARM</Scope>
|
||||||
|
</Scopes>
|
||||||
|
<Profile>
|
||||||
|
<SecondaryType>ApplicationProfile</SecondaryType>
|
||||||
|
<Name>GRSF Fishery</Name>
|
||||||
|
<Description>GRSF mapping between fields and namespaces for Fishery
|
||||||
|
records</Description>
|
||||||
|
<Body>
|
||||||
|
<fields>
|
||||||
|
<field>
|
||||||
|
<originalKey>Data Owner</originalKey>
|
||||||
|
<modifiedKey>fishery_data:Data Owner</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Database Source</originalKey>
|
||||||
|
<modifiedKey>fishery_identity:Database Source</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Short Name</originalKey>
|
||||||
|
<modifiedKey>fishery_identity:Short Name</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Catch</originalKey>
|
||||||
|
<modifiedKey>fishery_data:Catch</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Landing</originalKey>
|
||||||
|
<modifiedKey>fishery_data:Landing</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Species</originalKey>
|
||||||
|
<modifiedKey>fishery_identity:Species</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Similar GRSF Record</originalKey>
|
||||||
|
<modifiedKey>fishery_identity:Similar GRSF Record</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Management Body/Authority</originalKey>
|
||||||
|
<modifiedKey>fishery_identity:Management Body/Authority</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Connected Record</originalKey>
|
||||||
|
<modifiedKey>fishery_identity:Connected Record</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>GRSF Fishery Name</originalKey>
|
||||||
|
<modifiedKey>fishery_identity:GRSF Fishery Name</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>GRSF Semantic Identifier</originalKey>
|
||||||
|
<modifiedKey>fishery_identity:GRSF Semantic Identifier
|
||||||
|
</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Traceability Flag</originalKey>
|
||||||
|
<modifiedKey>fishery_identity:Traceability Flag</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Fishing Area</originalKey>
|
||||||
|
<modifiedKey>fishery_identity:Fishing Area</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Jurisdiction Area</originalKey>
|
||||||
|
<modifiedKey>fishery_identity:Jurisdiction Area</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Resources Exploited</originalKey>
|
||||||
|
<modifiedKey>fishery_identity:Resources Exploited</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Flag State</originalKey>
|
||||||
|
<modifiedKey>fishery_identity:Flag State</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Fishing Gear</originalKey>
|
||||||
|
<modifiedKey>fishery_identity:Fishing Gear</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>GRSF Type</originalKey>
|
||||||
|
<modifiedKey>fishery_identity:GRSF Type</modifiedKey>
|
||||||
|
</field>
|
||||||
|
</fields>
|
||||||
|
</Body>
|
||||||
|
</Profile>
|
||||||
|
</Resource>
|
|
@ -0,0 +1,118 @@
|
||||||
|
<Resource version="0.4.x">
|
||||||
|
<ID>512cca02-e178-420c-a766-b47171e154e2</ID>
|
||||||
|
<Type>GenericResource</Type>
|
||||||
|
<Scopes>
|
||||||
|
<Scope>/d4science.research-infrastructures.eu/FARM/GRSF</Scope>
|
||||||
|
</Scopes>
|
||||||
|
<Profile>
|
||||||
|
<SecondaryType>ApplicationProfile</SecondaryType>
|
||||||
|
<Name>GRSF Stock</Name>
|
||||||
|
<Description>GRSF mapping between fields and namespaces for Stock
|
||||||
|
records
|
||||||
|
</Description>
|
||||||
|
<Body>
|
||||||
|
<fields>
|
||||||
|
<field>
|
||||||
|
<originalKey>Data Owner</originalKey>
|
||||||
|
<modifiedKey>none:none</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Database Source</originalKey>
|
||||||
|
<modifiedKey>stock_identity:Database Source</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Short Name</originalKey>
|
||||||
|
<modifiedKey>stock_identity:Short Name</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Catch</originalKey>
|
||||||
|
<modifiedKey>none:none</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Landing</originalKey>
|
||||||
|
<modifiedKey>none:none</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Species</originalKey>
|
||||||
|
<modifiedKey>stock_identity:Species</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Similar GRSF Record</originalKey>
|
||||||
|
<modifiedKey>stock_identity:Similar GRSF Record</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Management Body/Authority</originalKey>
|
||||||
|
<modifiedKey>stock_identity:Management Body/Authority</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Connected Record</originalKey>
|
||||||
|
<modifiedKey>stock_identity:Connected Record</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Annotation</originalKey>
|
||||||
|
<modifiedKey>none:none</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>GRSF Stock Name</originalKey>
|
||||||
|
<modifiedKey>stock_identity:GRSF Stock Name</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>GRSF Semantic Identifier</originalKey>
|
||||||
|
<modifiedKey>stock_identity:GRSF Semantic Identifier</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Assessment Area</originalKey>
|
||||||
|
<modifiedKey>stock_identity:Assessment Area</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Exploiting Fishery</originalKey>
|
||||||
|
<modifiedKey>stock_identity:Exploiting Fishery</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Assessment Method</originalKey>
|
||||||
|
<modifiedKey>none:none</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Abundance Level (FIRMS Standard)</originalKey>
|
||||||
|
<modifiedKey>none:none</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Abundance Level</originalKey>
|
||||||
|
<modifiedKey>none:none</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Biomass</originalKey>
|
||||||
|
<modifiedKey>none:none</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Fishing Pressure (FIRMS Standard)</originalKey>
|
||||||
|
<modifiedKey>none:none</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Fishing Pressure</originalKey>
|
||||||
|
<modifiedKey>none:none</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>State and Trend</originalKey>
|
||||||
|
<modifiedKey>none:none</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>FAO Stock Status Category</originalKey>
|
||||||
|
<modifiedKey>none:none</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Scientific Advice</originalKey>
|
||||||
|
<modifiedKey>none:none</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Assessor</originalKey>
|
||||||
|
<modifiedKey>none:none</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>GRSF Type</originalKey>
|
||||||
|
<modifiedKey>stock_identity:GRSF Type</modifiedKey>
|
||||||
|
</field>
|
||||||
|
</fields>
|
||||||
|
</Body>
|
||||||
|
</Profile>
|
||||||
|
</Resource>
|
|
@ -0,0 +1,115 @@
|
||||||
|
<Resource version="0.4.x">
|
||||||
|
<ID>c9cad3f8-5773-4ca7-95a5-4692db5eae2e</ID>
|
||||||
|
<Type>GenericResource</Type>
|
||||||
|
<Scopes>
|
||||||
|
<Scope>/d4science.research-infrastructures.eu/FARM</Scope>
|
||||||
|
<Scope>/d4science.research-infrastructures.eu/FARM/GRSF_Admin</Scope>
|
||||||
|
</Scopes>
|
||||||
|
<Profile>
|
||||||
|
<SecondaryType>ApplicationProfile</SecondaryType>
|
||||||
|
<Name>GRSF Stock</Name>
|
||||||
|
<Description>GRSF mapping between fields and namespaces for Stock
|
||||||
|
records</Description>
|
||||||
|
<Body>
|
||||||
|
<fields>
|
||||||
|
<field>
|
||||||
|
<originalKey>Data Owner</originalKey>
|
||||||
|
<modifiedKey>stock_data:Data Owner</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Database Source</originalKey>
|
||||||
|
<modifiedKey>stock_identity:Database Source</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Short Name</originalKey>
|
||||||
|
<modifiedKey>stock_identity:Short Name</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Catch</originalKey>
|
||||||
|
<modifiedKey>stock_data:Catch</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Landing</originalKey>
|
||||||
|
<modifiedKey>stock_data:Landing</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Species</originalKey>
|
||||||
|
<modifiedKey>stock_identity:Species</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Similar GRSF Record</originalKey>
|
||||||
|
<modifiedKey>stock_identity:Similar GRSF Record</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Management Body/Authority</originalKey>
|
||||||
|
<modifiedKey>stock_identity:Management Body/Authority</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Connected Record</originalKey>
|
||||||
|
<modifiedKey>stock_identity:Connected Record</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>GRSF Stock Name</originalKey>
|
||||||
|
<modifiedKey>stock_identity:GRSF Stock Name</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>GRSF Semantic Identifier</originalKey>
|
||||||
|
<modifiedKey>stock_identity:GRSF Semantic Identifier</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Assessment Area</originalKey>
|
||||||
|
<modifiedKey>stock_identity:Assessment Area</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Exploiting Fishery</originalKey>
|
||||||
|
<modifiedKey>stock_identity:Exploiting Fishery</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Assessment Method</originalKey>
|
||||||
|
<modifiedKey>stock_data:Assessment Method</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Abundance Level (FIRMS Standard)</originalKey>
|
||||||
|
<modifiedKey>stock_data:Abundance Level (FIRMS Standard)
|
||||||
|
</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Abundance Level</originalKey>
|
||||||
|
<modifiedKey>stock_data:Abundance Level</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Biomass</originalKey>
|
||||||
|
<modifiedKey>stock_data:Biomass</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Fishing Pressure (FIRMS Standard)</originalKey>
|
||||||
|
<modifiedKey>stock_data:Fishing Pressure (FIRMS Standard)</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Fishing Pressure</originalKey>
|
||||||
|
<modifiedKey>stock_data:Fishing Pressure</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>State and Trend</originalKey>
|
||||||
|
<modifiedKey>stock_data:State and Trend</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>FAO Stock Status Category</originalKey>
|
||||||
|
<modifiedKey>stock_data:FAO Stock Status Category</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Scientific Advice</originalKey>
|
||||||
|
<modifiedKey>stock_data:Scientific Advice</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>Assessor</originalKey>
|
||||||
|
<modifiedKey>stock_data:Assessor</modifiedKey>
|
||||||
|
</field>
|
||||||
|
<field>
|
||||||
|
<originalKey>GRSF Type</originalKey>
|
||||||
|
<modifiedKey>stock_identity:GRSF Type</modifiedKey>
|
||||||
|
</field>
|
||||||
|
</fields>
|
||||||
|
</Body>
|
||||||
|
</Profile>
|
||||||
|
</Resource>
|
|
@ -0,0 +1,40 @@
|
||||||
|
<Resource version="0.4.x">
|
||||||
|
|
||||||
|
<ID>7ee9c6e9-ff73-4428-88e4-185aeb4b3742</ID>
|
||||||
|
|
||||||
|
<Type>GenericResource</Type>
|
||||||
|
|
||||||
|
<Scopes>
|
||||||
|
|
||||||
|
<Scope>/d4science.research-infrastructures.eu/FARM/GRSF_Pre</Scope>
|
||||||
|
|
||||||
|
<Scope>/d4science.research-infrastructures.eu/FARM/GRSF_Admin</Scope>
|
||||||
|
|
||||||
|
</Scopes>
|
||||||
|
|
||||||
|
<Profile>
|
||||||
|
|
||||||
|
<SecondaryType>ApplicationProfile</SecondaryType>
|
||||||
|
|
||||||
|
<Name>GRSFManageEntries</Name>
|
||||||
|
|
||||||
|
<Description>A list of extras metadata to be looked up and prompted by the GRSF Manage widget. The body reports the key values.</Description>
|
||||||
|
|
||||||
|
<Body>
|
||||||
|
fishery_identity:GRSF Type,
|
||||||
|
fishery_identity:Short Name,
|
||||||
|
fishery_identity:Database Source,
|
||||||
|
fishery_identity:GRSF Semantic Identifier,
|
||||||
|
fishery_data:Catch,
|
||||||
|
fishery_data:Landing,
|
||||||
|
stock_identity:GRSF Type,
|
||||||
|
stock_identity:Short Name,
|
||||||
|
stock_identity:Database Source,
|
||||||
|
stock_identity:GRSF Semantic Identifier,
|
||||||
|
stock_data:Catch,
|
||||||
|
stock_data:Landing
|
||||||
|
</Body>
|
||||||
|
|
||||||
|
</Profile>
|
||||||
|
|
||||||
|
</Resource>
|
|
@ -1,7 +1,7 @@
|
||||||
<application mode='online'>
|
<application mode='online'>
|
||||||
<name>GRSFPublisher</name>
|
<name>GRSFPublisher</name>
|
||||||
<group>Data-Catalogue</group>
|
<group>Data-Catalogue</group>
|
||||||
<version>1.5.0</version>
|
<version>1.13.0</version>
|
||||||
<description>Data Catalogue Service</description>
|
<description>Data Catalogue Service</description>
|
||||||
<local-persistence location='target' />
|
<local-persistence location='target' />
|
||||||
<exclude>/rest/</exclude>
|
<exclude>/rest/</exclude>
|
||||||
|
|
|
@ -33,6 +33,12 @@
|
||||||
<!-- <param-value>/gcube/devsec/devVRE</param-value> -->
|
<!-- <param-value>/gcube/devsec/devVRE</param-value> -->
|
||||||
<param-value>/d4science.research-infrastructures.eu/FARM/GRSF</param-value>
|
<param-value>/d4science.research-infrastructures.eu/FARM/GRSF</param-value>
|
||||||
</context-param>
|
</context-param>
|
||||||
|
<context-param>
|
||||||
|
<description>Context of pending products under manage activities for prevalidation VRE</description>
|
||||||
|
<param-name>PreValidateVRE</param-name>
|
||||||
|
<!-- <param-value>/gcube/devNext/NextNext</param-value> -->
|
||||||
|
<param-value>/d4science.research-infrastructures.eu/FARM/GRSF_Pre</param-value>
|
||||||
|
</context-param>
|
||||||
<welcome-file-list>
|
<welcome-file-list>
|
||||||
<welcome-file>index.jsp</welcome-file>
|
<welcome-file>index.jsp</welcome-file>
|
||||||
</welcome-file-list>
|
</welcome-file-list>
|
||||||
|
|
|
@ -13,17 +13,6 @@ import java.util.HashMap;
|
||||||
import java.util.List;
|
import java.util.List;
|
||||||
import java.util.Map;
|
import java.util.Map;
|
||||||
|
|
||||||
import org.gcube.common.authorization.library.provider.SecurityTokenProvider;
|
|
||||||
import org.gcube.common.homelibrary.home.HomeLibrary;
|
|
||||||
import org.gcube.common.homelibrary.home.exceptions.InternalErrorException;
|
|
||||||
import org.gcube.common.homelibrary.home.workspace.Workspace;
|
|
||||||
import org.gcube.common.homelibrary.home.workspace.WorkspaceFolder;
|
|
||||||
import org.gcube.common.homelibrary.home.workspace.WorkspaceItem;
|
|
||||||
import org.gcube.common.homelibrary.home.workspace.WorkspaceSharedFolder;
|
|
||||||
import org.gcube.common.homelibrary.home.workspace.catalogue.WorkspaceCatalogue;
|
|
||||||
import org.gcube.common.homelibrary.home.workspace.exceptions.InsufficientPrivilegesException;
|
|
||||||
import org.gcube.common.homelibrary.home.workspace.exceptions.ItemAlreadyExistException;
|
|
||||||
import org.gcube.common.scope.api.ScopeProvider;
|
|
||||||
import org.gcube.data_catalogue.grsf_publish_ws.custom_annotations.CustomField;
|
import org.gcube.data_catalogue.grsf_publish_ws.custom_annotations.CustomField;
|
||||||
import org.gcube.data_catalogue.grsf_publish_ws.custom_annotations.Group;
|
import org.gcube.data_catalogue.grsf_publish_ws.custom_annotations.Group;
|
||||||
import org.gcube.data_catalogue.grsf_publish_ws.custom_annotations.Tag;
|
import org.gcube.data_catalogue.grsf_publish_ws.custom_annotations.Tag;
|
||||||
|
@ -238,129 +227,8 @@ public class JTests {
|
||||||
instance.uploadResourceFile(csvFile, datasetName, instance.getApiKeyFromUsername("costantino.perciante"), "random_name.csv", null, null, null);
|
instance.uploadResourceFile(csvFile, datasetName, instance.getApiKeyFromUsername("costantino.perciante"), "random_name.csv", null, null, null);
|
||||||
}
|
}
|
||||||
|
|
||||||
// @Test
|
|
||||||
public void sharedVREFolderWriteTest() throws Exception{
|
|
||||||
|
|
||||||
String token = "";
|
|
||||||
String context = "/gcube/devNext/NextNext";
|
|
||||||
|
|
||||||
ScopeProvider.instance.set(context);
|
|
||||||
SecurityTokenProvider.instance.set(token);
|
|
||||||
|
|
||||||
Workspace ws = HomeLibrary.getHomeManagerFactory().getHomeManager().getHome().getWorkspace();
|
|
||||||
|
|
||||||
// Get a VRE folder by scope
|
|
||||||
WorkspaceSharedFolder vreFolder = ws.getVREFolderByScope(context);
|
|
||||||
|
|
||||||
//Get the VRE Folder catalogue
|
|
||||||
WorkspaceCatalogue catalogueFolder = vreFolder.getVRECatalogue();
|
|
||||||
|
|
||||||
logger.debug("Catalogue folder retrieved " + catalogueFolder.getName());
|
|
||||||
|
|
||||||
// WorkspaceItem stockFolder = catalogueFolder.find("stock");
|
|
||||||
|
|
||||||
// vreFolder.removeChild(stockFolder);
|
|
||||||
|
|
||||||
/**
|
|
||||||
* Test is
|
|
||||||
* .catalogue:
|
|
||||||
* -test
|
|
||||||
* - a
|
|
||||||
* -aproductwiththisname
|
|
||||||
* - csv
|
|
||||||
* - testfile.csv
|
|
||||||
*/
|
|
||||||
|
|
||||||
String allSubPath = "/test/a/aproductwiththisname/";
|
|
||||||
//WorkspaceFolder lastFolder = createGetSubFoldersByPath(catalogueFolder, allSubPath);
|
|
||||||
// WorkspaceFolder recordFolder = (WorkspaceFolder)getFolderOrCreate(catalogueFolder, "test", "");
|
|
||||||
// String firstLetter = "a";
|
|
||||||
// WorkspaceFolder firstLetterFolder = (WorkspaceFolder)getFolderOrCreate(recordFolder, firstLetter, "");
|
|
||||||
// String folderPath = "aproductwiththisname";
|
|
||||||
// WorkspaceFolder productFolder = (WorkspaceFolder)getFolderOrCreate(firstLetterFolder, folderPath, "");
|
|
||||||
//logger.debug("Test folder created/get..its path is " + lastFolder.getPath());
|
|
||||||
// String ccsvUnderProductFolderName = productFolderName + "/" + "csv";
|
|
||||||
// WorkspaceFolder csvUnderProductFolder = (WorkspaceFolder)getFolderOrCreate(catalogueFolder, ccsvUnderProductFolderName, "");
|
|
||||||
//
|
|
||||||
// logger.debug("FOLDERS created " + csvUnderProductFolder.getPath());
|
|
||||||
// treeCheck(catalogueFolder);
|
|
||||||
|
|
||||||
}
|
|
||||||
|
|
||||||
public void treeCheck(WorkspaceFolder rootFolder) throws InternalErrorException{
|
|
||||||
List<WorkspaceItem> children = rootFolder.getChildren();
|
|
||||||
for (WorkspaceItem workspaceItem : children) {
|
|
||||||
if(workspaceItem.isFolder()){
|
|
||||||
logger.debug("children folder is " + workspaceItem.getName());
|
|
||||||
treeCheck((WorkspaceFolder)workspaceItem);
|
|
||||||
}
|
|
||||||
}
|
|
||||||
}
|
|
||||||
|
|
||||||
/**
|
|
||||||
* Create subfolders in cascade, returning the last created ones
|
|
||||||
* It could be also used for getting them if they already exists
|
|
||||||
* @param folder
|
|
||||||
* @param subPath
|
|
||||||
* @return
|
|
||||||
*/
|
|
||||||
private static WorkspaceFolder createGetSubFoldersByPath(WorkspaceFolder folder, String subPath){
|
|
||||||
|
|
||||||
String pathSeparator = "/";
|
|
||||||
WorkspaceFolder parentFolder = folder;
|
|
||||||
if(folder == null)
|
|
||||||
throw new IllegalArgumentException("Root folder is null!");
|
|
||||||
|
|
||||||
if(subPath == null || subPath.isEmpty())
|
|
||||||
throw new IllegalArgumentException("subPath is null/empty!");
|
|
||||||
|
|
||||||
try{
|
|
||||||
if(subPath.startsWith(pathSeparator))
|
|
||||||
subPath = subPath.replaceFirst(pathSeparator, "");
|
|
||||||
|
|
||||||
if(subPath.endsWith(subPath))
|
|
||||||
subPath = subPath.substring(0, subPath.length() - 1);
|
|
||||||
|
|
||||||
logger.debug("Splitting path " + subPath);
|
|
||||||
|
|
||||||
String[] splittedPaths = subPath.split(pathSeparator);
|
|
||||||
|
|
||||||
for (String path : splittedPaths) {
|
|
||||||
WorkspaceFolder createdFolder = getFolderOrCreate(parentFolder, path, "");
|
|
||||||
logger.debug("Created subfolder with path " + createdFolder.getPath());
|
|
||||||
parentFolder = createdFolder;
|
|
||||||
}
|
|
||||||
|
|
||||||
}catch(Exception e){
|
|
||||||
logger.error("Failed to create the subfolders by path " + subPath);
|
|
||||||
}
|
|
||||||
|
|
||||||
return parentFolder;
|
|
||||||
}
|
|
||||||
|
|
||||||
/**
|
|
||||||
* Get a folder within the catalogue folder or create it if it doesn't exist.
|
|
||||||
* @return
|
|
||||||
*/
|
|
||||||
private static WorkspaceFolder getFolderOrCreate(WorkspaceFolder folder, String relativePath, String descriptionFolder){
|
|
||||||
WorkspaceFolder result = null;
|
|
||||||
try {
|
|
||||||
if(folder.exists(relativePath) && folder.find(relativePath).isFolder())
|
|
||||||
result = (WorkspaceFolder) folder.find(relativePath);
|
|
||||||
if(result != null)
|
|
||||||
logger.debug("Folder found with name " + result.getName() + ", it has id " + result.getId());
|
|
||||||
else
|
|
||||||
throw new Exception("There is no folder with name " + relativePath + " under foler " + folder.getName());
|
|
||||||
} catch (Exception e) {
|
|
||||||
logger.debug("Probably the folder doesn't exist", e);
|
|
||||||
try{
|
|
||||||
result = folder.createFolder(relativePath, descriptionFolder);
|
|
||||||
} catch (InsufficientPrivilegesException | InternalErrorException | ItemAlreadyExistException e2) {
|
|
||||||
logger.error("Failed to get or generate this folder", e2);
|
|
||||||
}
|
|
||||||
}
|
|
||||||
return result;
|
|
||||||
}
|
|
||||||
|
|
||||||
//@Test
|
//@Test
|
||||||
public void GRSFServiceUrl() throws Exception{
|
public void GRSFServiceUrl() throws Exception{
|
||||||
|
@ -402,7 +270,7 @@ public class JTests {
|
||||||
}
|
}
|
||||||
|
|
||||||
//@Test
|
//@Test
|
||||||
public void testCaches(){
|
public void testCaches() throws Exception{
|
||||||
|
|
||||||
String context = "/gcube/devNext/NextNext";
|
String context = "/gcube/devNext/NextNext";
|
||||||
String token = "";
|
String token = "";
|
||||||
|
|
|
@ -0,0 +1,38 @@
|
||||||
|
package org.gcube.data_catalogue.grsf_publish_ws;
|
||||||
|
|
||||||
|
import java.io.File;
|
||||||
|
import java.net.URL;
|
||||||
|
|
||||||
|
import org.gcube.data_catalogue.grsf_publish_ws.json.input.record.StockRecord;
|
||||||
|
import org.junit.Test;
|
||||||
|
import org.slf4j.Logger;
|
||||||
|
import org.slf4j.LoggerFactory;
|
||||||
|
|
||||||
|
import com.fasterxml.jackson.databind.JsonNode;
|
||||||
|
import com.fasterxml.jackson.databind.ObjectMapper;
|
||||||
|
|
||||||
|
/**
|
||||||
|
* @author Luca Frosini (ISTI - CNR)
|
||||||
|
*/
|
||||||
|
public class TestJson {
|
||||||
|
|
||||||
|
private static final Logger logger = LoggerFactory.getLogger(Test.class);
|
||||||
|
|
||||||
|
public File getResourcesDirectory() throws Exception {
|
||||||
|
URL logbackFileURL = TestJson.class.getClassLoader().getResource("logback-test.xml");
|
||||||
|
File logbackFile = new File(logbackFileURL.toURI());
|
||||||
|
File resourcesDirectory = logbackFile.getParentFile();
|
||||||
|
return resourcesDirectory;
|
||||||
|
}
|
||||||
|
|
||||||
|
@Test
|
||||||
|
public void testJsonDeserialization() throws Exception {
|
||||||
|
File jsonQueryFile = new File(getResourcesDirectory(), "70ae6895-7d3d-4f4a-86f9-bcb17d41bff6.json");
|
||||||
|
ObjectMapper objectMapper = new ObjectMapper();
|
||||||
|
JsonNode jsonNode = objectMapper.readTree(jsonQueryFile);
|
||||||
|
logger.debug("{}", jsonNode);
|
||||||
|
StockRecord sr = objectMapper.readValue(jsonQueryFile, StockRecord.class);
|
||||||
|
logger.debug("{}", sr);
|
||||||
|
}
|
||||||
|
|
||||||
|
}
|
|
@ -0,0 +1,34 @@
|
||||||
|
{
|
||||||
|
"stock_name" : "European hake - Southern Adriatic",
|
||||||
|
"license_id" : "CC-BY-SA-4.0",
|
||||||
|
"version" : 1.0,
|
||||||
|
"database_sources" : [ {
|
||||||
|
"name" : "FAO SDG 14.4.1 questionnaire",
|
||||||
|
"description" : "FAO SDG 14.4.1 questionnaire",
|
||||||
|
"url" : "https://www.fao.org/sustainable-development-goals/indicators/14.4.1/en/"
|
||||||
|
} ],
|
||||||
|
"stock_uri" : "https://github.com/grsf/resource/sdg_14_4_1/stock/70ae6895-7d3d-4f4a-86f9-bcb17d41bff6",
|
||||||
|
"grsf_uuid" : "70ae6895-7d3d-4f4a-86f9-bcb17d41bff6",
|
||||||
|
"short_name" : "European hake - Southern Adriatic",
|
||||||
|
"description" : "European hake - Southern Adriatic",
|
||||||
|
"grsf_type" : "assessment unit",
|
||||||
|
"species" : [ "Code: HKE, Classification System: ASFIS, Scientific Name: Merluccius merluccius" ],
|
||||||
|
"assessment_area" : [ "Code: 18, System: gfcm, Name: Southern Adriatic " ],
|
||||||
|
"source_of_information" : [ {
|
||||||
|
"name" : "https://www.fao.org/sustainable-development-goals/indicators/14.4.1/en/sdg-alb-1",
|
||||||
|
"description" : "",
|
||||||
|
"url" : "https://www.fao.org/sustainable-development-goals/indicators/14.4.1/en/sdg-alb-1"
|
||||||
|
} ],
|
||||||
|
"data_owner" : [ "Albania" ],
|
||||||
|
"assessment_methods" : [ "The official stock assessment concludes 'Overfished' with respect to abundance reference points. [Rep. Year or Assessment ID: 2019, Ref. Year: 2018]" ],
|
||||||
|
"connections_indicator" : "not connected",
|
||||||
|
"similarities_indicator" : "without similar records",
|
||||||
|
"landings" : [ {
|
||||||
|
"value" : "872",
|
||||||
|
"unit" : "Tonnes",
|
||||||
|
"reference_year" : 2018,
|
||||||
|
"reporting_year_or_assessment_id" : "2020",
|
||||||
|
"data_owner" : "Albania"
|
||||||
|
} ],
|
||||||
|
"citation" : "citation TBD"
|
||||||
|
}
|
|
@ -0,0 +1,19 @@
|
||||||
|
<?xml version="1.0" encoding="UTF-8"?>
|
||||||
|
<!DOCTYPE xml>
|
||||||
|
<configuration>
|
||||||
|
|
||||||
|
<appender name="STDOUT" class="ch.qos.logback.core.ConsoleAppender">
|
||||||
|
<encoder>
|
||||||
|
<pattern>%d{HH:mm:ss.SSS} [%thread] %-5level %logger{0}: %msg%n</pattern>
|
||||||
|
</encoder>
|
||||||
|
</appender>
|
||||||
|
|
||||||
|
|
||||||
|
<logger name="org.gcube" level="INFO" />
|
||||||
|
<logger name="org.gcube.data_catalogue.grsf_publish_ws" level="TRACE" />
|
||||||
|
|
||||||
|
<root level="WARN">
|
||||||
|
<appender-ref ref="STDOUT" />
|
||||||
|
</root>
|
||||||
|
|
||||||
|
</configuration>
|
Loading…
Reference in New Issue