Test indexer
This commit is contained in:
parent
bb1bda69f8
commit
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@ -49,6 +49,13 @@
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<version>[1.2.1,2.0.0]</version>
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</dependency>
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<!-- POSTGRES DRIVERS -->
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<dependency>
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<groupId>net.postgis</groupId>
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<artifactId>postgis-jdbc</artifactId>
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<version>2.5.0</version>
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</dependency>
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<dependency>
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<groupId>org.gcube.application.cms</groupId>
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<artifactId>cms-test-commons</artifactId>
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@ -231,7 +231,9 @@ public class PostgisTable {
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break;
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}
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case GEOMETRY : {
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toFill.setBytes(psFieldIndex, (byte[])value);
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if(value instanceof String)
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toFill.setString(psFieldIndex, ((String) value));
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else toFill.setBytes(psFieldIndex, (byte[])value);
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}
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}
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}
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@ -17,6 +17,7 @@ import org.gcube.application.cms.sdi.engine.SDIManager;
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import org.gcube.application.cms.sdi.engine.SDIManagerWrapper;
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import org.gcube.application.geoportal.common.model.rest.ConfigurationException;
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import org.gcube.application.geoportal.common.model.rest.DatabaseConnection;
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import org.gcube.application.geoportal.common.utils.ContextUtils;
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import org.gcube.data.transfer.model.ServiceConstants;
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import java.time.Duration;
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@ -52,8 +53,10 @@ public abstract class SDIAbstractPlugin extends AbstractPlugin implements Initia
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@Override
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protected DatabaseConnection retrieveObject() throws ConfigurationException {
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try {
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return ImplementationProvider.get().getEngineByClass(ISInterface.class).
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DatabaseConnection db = ImplementationProvider.get().getEngineByClass(ISInterface.class).
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queryForDatabase("Database","postgis", "GNA_DB","Concessioni");
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log.debug("Postgis Connection in {} is {} ", ContextUtils.getCurrentScope(),db);
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return db;
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} catch (Exception e) {
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throw new ConfigurationException(e);
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}
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@ -4,7 +4,9 @@ import lombok.Data;
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import lombok.extern.slf4j.Slf4j;
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import org.bson.Document;
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import org.gcube.application.cms.plugins.IndexerPluginInterface;
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import org.gcube.application.cms.plugins.faults.IndexingException;
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import org.gcube.application.cms.plugins.faults.InitializationException;
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import org.gcube.application.cms.plugins.faults.InvalidPluginRequestException;
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import org.gcube.application.cms.plugins.faults.InvalidProfileException;
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import org.gcube.application.cms.plugins.model.PluginDescriptor;
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import org.gcube.application.cms.plugins.reports.IndexDocumentReport;
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@ -19,6 +21,7 @@ import org.gcube.application.geoportal.common.model.JSONPathWrapper;
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import org.gcube.application.cms.plugins.model.ComparableVersion;
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import org.gcube.application.geoportal.common.model.document.ProfiledDocument;
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import org.gcube.application.geoportal.common.model.document.filesets.GCubeSDILayer;
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import org.gcube.application.geoportal.common.model.document.spatial.SpatialReference;
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import org.gcube.application.geoportal.common.model.profile.Profile;
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import java.util.ArrayList;
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@ -33,10 +36,10 @@ public class SDIIndexerPlugin extends SDIAbstractPlugin implements IndexerPlugin
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private String type;
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private String path;
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public void validate () throws RuntimeException {
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if(name==null) throw new RuntimeException("Invalid mapping "+this+" : name is null");
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if(type==null) throw new RuntimeException("Invalid mapping "+this+" : type is null");
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if(path==null) throw new RuntimeException("Invalid mapping "+this+" : path is null");
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public void validate () throws InvalidProfileException {
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if(name==null) throw new InvalidProfileException("Invalid mapping "+this+" : name is null");
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if(type==null) throw new InvalidProfileException("Invalid mapping "+this+" : type is null");
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if(path==null) throw new InvalidProfileException("Invalid mapping "+this+" : path is null");
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}
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}
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@ -68,13 +71,14 @@ public class SDIIndexerPlugin extends SDIAbstractPlugin implements IndexerPlugin
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* Expected parameters :
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* - indexName (unique)
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* - workspace
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* - centroidRecord (OPT)
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*
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* @param request
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* @return
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*/
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@Override
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public IndexDocumentReport index(IndexDocumentRequest request) {
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public IndexDocumentReport index(IndexDocumentRequest request) throws InvalidPluginRequestException {
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log.info("Indexer {} : Performing {} ",this.getDescriptor().getId(),request);
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@ -100,17 +104,23 @@ public class SDIIndexerPlugin extends SDIAbstractPlugin implements IndexerPlugin
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fields.add(new PostgisTable.Field("geom", PostgisTable.FieldType.GEOMETRY));
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fields.add(new PostgisTable.Field("projectid", PostgisTable.FieldType.TEXT));
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List mappingObjs= profileConfiguration.get("explicitFieldMapping",List.class);
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log.trace("Loading mappings from profile.. ");
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List<MappingObject> mappingObjects= new ArrayList<>();
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if(mappingObjs!=null){
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mappingObjs.forEach(o -> {
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log.trace("Mapping is {} ",o);
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MappingObject m = Serialization.convert(o,MappingObject.class);
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for (Object mappingObj : mappingObjs) {
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log.trace("Mapping is {} ",mappingObj);
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MappingObject m = Serialization.convert(mappingObj,MappingObject.class);
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m.validate();
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fields.add(new PostgisTable.Field(m.getName(), PostgisTable.FieldType.valueOf(m.getType())));
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});
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}
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}
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indexer.initIndex(requestArguments.getString("indexName"),
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fields,
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requestArguments.getString("workspace"),
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@ -123,9 +133,11 @@ public class SDIIndexerPlugin extends SDIAbstractPlugin implements IndexerPlugin
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JSONPathWrapper documentNavigator=new JSONPathWrapper(Serialization.write(profiledDocument));
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Document doc = requestArguments;
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Document centroidDoc = new Document();
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if(requestArguments.containsKey("centroidRecord"))
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centroidDoc.putAll(requestArguments.get("centroidRecords",Document.class));
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// DEFAULT VALUES
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doc.put("projectid",profiledDocument.getId());
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centroidDoc.put("projectid",profiledDocument.getId());
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// ********************** EVALAUTE POSITION
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log.debug("indexing Profile {} : Evaluating Centroid... ",profile.getId());
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@ -142,9 +154,10 @@ public class SDIIndexerPlugin extends SDIAbstractPlugin implements IndexerPlugin
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GCubeSDILayer.BBOX toSet = null;
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for(Object pathObj : bboxEvaluationPaths){
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log.debug("Profile {} : Evaluating path {} ",profile.getId(),pathObj);
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for(String path : documentNavigator.getMatchingPaths(pathObj.toString())) {
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Object bboxObject = documentNavigator.getByPath(path).get(0);
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log.info("Matched path {}, value is {} ",path,bboxObject);
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List<Object> bboxObjects = documentNavigator.getByPath(pathObj.toString());
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log.debug("Profile {} : Evaluating path {} .. results {} ",profile.getId(),pathObj,bboxObjects);
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for(Object bboxObject : bboxObjects) {
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log.info("Matched path {}, value is {} ",pathObj.toString(),bboxObject);
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GCubeSDILayer.BBOX box = Serialization.convert(bboxObject, GCubeSDILayer.BBOX.class);
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if(toSet == null) toSet = box;
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@ -156,16 +169,19 @@ public class SDIIndexerPlugin extends SDIAbstractPlugin implements IndexerPlugin
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}
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}
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if(toSet == null)
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throw new IndexingException("No BBOX has been found on paths : "+bboxEvaluationPaths);
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log.info("Evaluated BBOX {} ",toSet);
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String wkt = String .format("POINT (%1$d %2$d) ",
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toSet.getMaxX()-toSet.getMinX(),
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String wkt = String .format("POINT (%1$f %2$f) ",
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(toSet.getMaxX()-toSet.getMinX()),
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toSet.getMaxY()-toSet.getMinY());
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// TODO SET Spatial reference
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doc.put("geom",wkt);
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centroidDoc.put("geom",wkt);
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}
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@ -173,21 +189,22 @@ public class SDIIndexerPlugin extends SDIAbstractPlugin implements IndexerPlugin
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//*********** Additional Values from profile
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log.info("Setting additional values");
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if(mappingObjs!=null){
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mappingObjs.forEach(o -> {
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log.trace("Mapping is {} ",o);
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MappingObject m = Serialization.convert(o,MappingObject.class);
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doc.put(m.getName(),documentNavigator.getByPath(m.getPath()).get(0));
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});
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log.info("Setting additional values to centroid from mappings ..");
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for(MappingObject m : mappingObjects){
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List<Object> foundValues = documentNavigator.getByPath(m.getPath());
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Object toSetValue=null;
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if(!foundValues.isEmpty())
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toSetValue=foundValues.get(0);
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log.trace("Setting {} = {} in centroid doc ",m.getName(),toSetValue);
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centroidDoc.put(m.getName(),foundValues.get(0));
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}
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log.info("Inserting Centroid {} into {} ",centroidDoc.toJson(),indexer);
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indexer.insert(centroidDoc);
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indexer.insert(doc);
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String finalDocument = documentNavigator.getValueCTX().jsonString();
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log.debug("Final document after indexing is {} ",finalDocument);
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report.setResultingDocument(Document.parse(finalDocument));
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// TODO GEOJSON
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report.setToSetSpatialReference(new SpatialReference());
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report.setStatus(Report.Status.OK);
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}catch (SDIInteractionException e){
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log.error("Unable to index "+request,e);
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@ -5,6 +5,7 @@ import lombok.Synchronized;
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import lombok.extern.slf4j.Slf4j;
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import org.bson.Document;
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import org.gcube.application.cms.plugins.AbstractPlugin;
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import org.gcube.application.cms.plugins.faults.InvalidPluginRequestException;
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import org.gcube.application.cms.sdi.engine.SDIManagerWrapper;
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import org.gcube.application.cms.sdi.faults.SDIInteractionException;
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import org.gcube.application.cms.plugins.MaterializationPlugin;
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@ -87,7 +88,7 @@ public class SDIMaterializerPlugin extends AbstractPlugin implements Materializa
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* @throws MaterializationException
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*/
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@Override
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public MaterializationReport materialize(MaterializationRequest request) throws MaterializationException {
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public MaterializationReport materialize(MaterializationRequest request) throws MaterializationException, InvalidPluginRequestException {
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log.info("Materializer {} : Performing {} ",this.getDescriptor().getId(),request);
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ProfiledDocument profiledDocument=request.getDocument();
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Profile profile = request.getProfile();
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@ -0,0 +1,173 @@
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<?xml version="1.0" encoding="ISO-8859-1"?>
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<StyledLayerDescriptor version="1.0.0"
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xsi:schemaLocation="http://www.opengis.net/sld StyledLayerDescriptor.xsd"
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xmlns="http://www.opengis.net/sld"
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xmlns:ogc="http://www.opengis.net/ogc"
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xmlns:xlink="http://www.w3.org/1999/xlink"
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xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
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<NamedLayer>
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<Name>vol_stacked_point</Name>
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<UserStyle>
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<!-- Styles can have names, titles and abstracts -->
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<Title>Stacked Point</Title>
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<Abstract>Styles archeomar using stacked points</Abstract>
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<FeatureTypeStyle>
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<Transformation>
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<ogc:Function name="vec:PointStacker">
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<ogc:Function name="parameter">
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<ogc:Literal>data</ogc:Literal>
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</ogc:Function>
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<ogc:Function name="parameter">
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<ogc:Literal>cellSize</ogc:Literal>
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<ogc:Literal>30</ogc:Literal>
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</ogc:Function>
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<ogc:Function name="parameter">
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<ogc:Literal>outputBBOX</ogc:Literal>
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<ogc:Function name="env">
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<ogc:Literal>wms_bbox</ogc:Literal>
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</ogc:Function>
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</ogc:Function>
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<ogc:Function name="parameter">
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<ogc:Literal>outputWidth</ogc:Literal>
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<ogc:Function name="env">
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<ogc:Literal>wms_width</ogc:Literal>
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</ogc:Function>
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</ogc:Function>
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<ogc:Function name="parameter">
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<ogc:Literal>outputHeight</ogc:Literal>
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<ogc:Function name="env">
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<ogc:Literal>wms_height</ogc:Literal>
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</ogc:Function>
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</ogc:Function>
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</ogc:Function>
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</Transformation>
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<Rule>
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<Name>rule1</Name>
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<Title>Site</Title>
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<ogc:Filter>
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<ogc:PropertyIsLessThanOrEqualTo>
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<ogc:PropertyName>count</ogc:PropertyName>
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<ogc:Literal>1</ogc:Literal>
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</ogc:PropertyIsLessThanOrEqualTo>
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</ogc:Filter>
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<PointSymbolizer>
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<Graphic>
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<Mark>
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<WellKnownName>circle</WellKnownName>
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<Fill>
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<CssParameter name="fill">#FF0000</CssParameter>
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</Fill>
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</Mark>
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<Size>8</Size>
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</Graphic>
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</PointSymbolizer>
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</Rule>
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<Rule>
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<Name>rule29</Name>
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<Title>2-9 Sites</Title>
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<ogc:Filter>
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<ogc:PropertyIsBetween>
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<ogc:PropertyName>count</ogc:PropertyName>
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<ogc:LowerBoundary>
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<ogc:Literal>2</ogc:Literal>
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</ogc:LowerBoundary>
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<ogc:UpperBoundary>
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<ogc:Literal>9</ogc:Literal>
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</ogc:UpperBoundary>
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</ogc:PropertyIsBetween>
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</ogc:Filter>
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<PointSymbolizer>
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<Graphic>
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<Mark>
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<WellKnownName>circle</WellKnownName>
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<Fill>
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<CssParameter name="fill">#AA0000</CssParameter>
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</Fill>
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</Mark>
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<Size>14</Size>
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</Graphic>
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</PointSymbolizer>
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<TextSymbolizer>
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<Label>
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<ogc:PropertyName>count</ogc:PropertyName>
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</Label>
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<Font>
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<CssParameter name="font-family">Arial</CssParameter>
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<CssParameter name="font-size">12</CssParameter>
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<CssParameter name="font-weight">bold</CssParameter>
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</Font>
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<LabelPlacement>
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<PointPlacement>
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<AnchorPoint>
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<AnchorPointX>0.5</AnchorPointX>
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<AnchorPointY>0.8</AnchorPointY>
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</AnchorPoint>
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</PointPlacement>
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</LabelPlacement>
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<Halo>
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<Radius>2</Radius>
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<Fill>
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<CssParameter name="fill">#AA0000</CssParameter>
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<CssParameter name="fill-opacity">0.9</CssParameter>
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</Fill>
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</Halo>
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<Fill>
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<CssParameter name="fill">#FFFFFF</CssParameter>
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<CssParameter name="fill-opacity">1.0</CssParameter>
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</Fill>
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</TextSymbolizer>
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</Rule>
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<Rule>
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<Name>rule10</Name>
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<Title>10 Sites</Title>
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<ogc:Filter>
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<ogc:PropertyIsGreaterThan>
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<ogc:PropertyName>count</ogc:PropertyName>
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<ogc:Literal>9</ogc:Literal>
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</ogc:PropertyIsGreaterThan>
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</ogc:Filter>
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<PointSymbolizer>
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<Graphic>
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<Mark>
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<WellKnownName>circle</WellKnownName>
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<Fill>
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<CssParameter name="fill">#AA0000</CssParameter>
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</Fill>
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</Mark>
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<Size>22</Size>
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</Graphic>
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</PointSymbolizer>
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<TextSymbolizer>
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<Label>
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<ogc:PropertyName>count</ogc:PropertyName>
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</Label>
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<Font>
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<CssParameter name="font-family">Arial</CssParameter>
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<CssParameter name="font-size">12</CssParameter>
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<CssParameter name="font-weight">bold</CssParameter>
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</Font>
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<LabelPlacement>
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<PointPlacement>
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<AnchorPoint>
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<AnchorPointX>0.5</AnchorPointX>
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<AnchorPointY>0.8</AnchorPointY>
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</AnchorPoint>
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</PointPlacement>
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</LabelPlacement>
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<Halo>
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<Radius>2</Radius>
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<Fill>
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<CssParameter name="fill">#AA0000</CssParameter>
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<CssParameter name="fill-opacity">0.9</CssParameter>
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</Fill>
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</Halo>
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<Fill>
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<CssParameter name="fill">#FFFFFF</CssParameter>
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<CssParameter name="fill-opacity">1.0</CssParameter>
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</Fill>
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</TextSymbolizer>
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</Rule>
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</FeatureTypeStyle>
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</UserStyle>
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</NamedLayer>
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</StyledLayerDescriptor>
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@ -17,6 +17,7 @@ import org.gcube.application.geoportal.common.utils.Files;
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import org.gcube.application.geoportal.common.utils.tests.GCubeTest;
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import org.junit.Test;
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import static junit.framework.TestCase.assertTrue;
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import static org.junit.Assume.assumeTrue;
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public class IndexerTest extends BasicPluginTest {
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@ -37,11 +38,12 @@ public class IndexerTest extends BasicPluginTest {
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IndexerPluginInterface plugin = (IndexerPluginInterface) plugins.get(SDIIndexerPlugin.DESCRIPTOR.getId());
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IndexDocumentReport response = plugin.index(request);
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assumeTrue(response!=null);
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assertTrue(response!=null);
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response.validate();
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System.out.println("Response is "+Serialization.write(response));
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assumeTrue(response.getStatus().equals(Report.Status.OK));
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assumeTrue(response.prepareResult().getSpatialReference()!=null);
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assertTrue(response.getStatus().equals(Report.Status.OK));
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assertTrue(response.prepareResult().getSpatialReference()!=null);
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}
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}
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