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Merge pull request 'suite1.0.3' (#8) from suite1.0.3 into master 

Reviewed-on: #8
This commit is contained in:
Fabio Sinibaldi 2022-12-14 16:19:50 +01:00
parent 3fb1b22ff5 e1defba910
commit 87611c1245
56 changed files with 1288 additions and 138 deletions
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4
CHANGELOG.md
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@ -2,6 +2,10 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm
# Changelog for org.gcube.spatial.data.gcube-sdi-suite
## [v1.0.3] - 2022-12-07
- Updated plugin framework
- Introduced module default-lc-managers
## [v1.0.2] - 2021-02-24
-Introduced module sdi-plugins
-Introduced module notifications-plugins

3
ckan-plugin/CHANGELOG.md
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@ -4,5 +4,8 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm
This library contains gcube-cms plugins for ckan materializations
## [v1.0.1] - 2022-12-07
- Pom updates
## [v1.0.0] - 2022-02-24
- First release

4
ckan-plugin/pom.xml
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@ -5,14 +5,14 @@
<modelVersion>4.0.0</modelVersion>
<artifactId>ckan-plugins</artifactId>
<version>1.0.0</version>
<version>1.0.1</version>
<name>gCube CMS - CKAN Plugins</name>
<parent>
<groupId>org.gcube.application.cms</groupId>
<artifactId>gcube-cms-suite</artifactId>
<version>1.0.2</version>
<version>1.0.3</version>
</parent>
<properties>

4
cms-plugin-framework/CHANGELOG.md
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@ -2,6 +2,10 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm
# Changelog for org.gcube.application.cms-plugin-framework
## [v1.0.2] 2022-01-17
- Fixes #2435
- Introduced module default-lc-managers
## [v1.0.1] 2022-01-17
- Serialization Features

4
cms-plugin-framework/pom.xml
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@ -4,12 +4,12 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<artifactId>cms-plugin-framework</artifactId>
<version>1.0.1</version>
<version>1.0.2</version>
<parent>
<groupId>org.gcube.application.cms</groupId>
<artifactId>gcube-cms-suite</artifactId>
<version>1.0.2</version>
<version>1.0.3</version>
</parent>

3
cms-test-commons/CHANGELOG.md
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@ -2,6 +2,9 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm
# Changelog for org.gcube.application.cms.cms-test-commons
## [v1.0.3] - 2022-12-07
- Pom updates
## [v1.0.2] - 2022-01-17
- Profiles

4
cms-test-commons/pom.xml
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@ -5,14 +5,14 @@
<modelVersion>4.0.0</modelVersion>
<artifactId>cms-test-commons</artifactId>
<version>1.0.2</version>
<version>1.0.3</version>
<name>CMS Test Commons</name>
<parent>
<groupId>org.gcube.application.cms</groupId>
<artifactId>gcube-cms-suite</artifactId>
<version>1.0.2</version>
<version>1.0.3</version>
</parent>

6
cms-test-commons/src/main/java/org/gcube/application/cms/tests/TestDocuments.java
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@ -10,12 +10,12 @@ import java.nio.charset.Charset;
import java.util.HashMap;
public class TestDocuments {
public static File BASE_FOLDER =new File("../test-data/profiledDocuments");
public static File BASE_FOLDER =new File("test-data/profiledDocuments");
public static final HashMap<String, Project> documentMap =new HashMap<>();
static{
for(File f:BASE_FOLDER.listFiles()){
if(!BASE_FOLDER.exists()) System.err.println("Cannot load documents : folder not found, path "+BASE_FOLDER.getAbsolutePath());
for(File f:BASE_FOLDER.listFiles(pathname -> {return pathname.getName().endsWith(".json");})){
try {
if(!f.isDirectory()) {
Project p = Serialization.read(

4
concessioni-lifecycle/CHANGELOG.md
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@ -4,6 +4,10 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm
This library contains custom extensions for the support of GNA "concessioni" use case
## [v1.0.2] - 2022-12-07
- Pom updates
- Introduced module default-lc-managers
-
## [v1.0.1] - 2022-01-17
- Serialization adaptation

12
concessioni-lifecycle/pom.xml
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@ -4,14 +4,14 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<artifactId>concessioni-lifecycle</artifactId>
<version>1.0.1</version>
<version>1.0.2</version>
<name>GNA Concessioni Lifecycle</name>
<parent>
<groupId>org.gcube.application.cms</groupId>
<artifactId>gcube-cms-suite</artifactId>
<version>1.0.2</version>
<version>1.0.3</version>
</parent>
<properties>
@ -43,7 +43,7 @@
<dependencies>
<dependency>
<groupId>org.gcube.application.cms</groupId>
<artifactId>cms-plugin-framework</artifactId>
<artifactId>default-lc-managers</artifactId>
</dependency>
@ -52,12 +52,6 @@
<artifactId>concessioni-model</artifactId>
</dependency>
<!-- &lt;!&ndash; SDI &ndash;&gt;-->
<!-- <dependency>-->
<!-- <groupId>org.gcube.spatial.data</groupId>-->
<!-- <artifactId>gis-interface</artifactId>-->
<!-- <version>[2.4.6,3.0.0)</version>-->
<!-- </dependency>-->
<!-- DT -->
<dependency>

9
concessioni-lifecycle/src/main/java/org/gcube/application/cms/concessioni/plugins/ConcessioniLifeCycleManager.java
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@ -6,18 +6,11 @@ import org.bson.Document;
import org.gcube.application.cms.custom.gna.concessioni.model.ProfiledConcessione;
import org.gcube.application.cms.implementations.ImplementationProvider;
import org.gcube.application.cms.implementations.ProjectAccess;
import org.gcube.application.cms.implementations.faults.InvalidUserRoleException;
import org.gcube.application.cms.implementations.faults.ProjectNotFoundException;
import org.gcube.application.cms.implementations.faults.RegistrationException;
import org.gcube.application.cms.implementations.faults.UnauthorizedAccess;
import org.gcube.application.cms.plugins.IndexerPluginInterface;
import org.gcube.application.cms.plugins.LifecycleManager;
import org.gcube.application.cms.plugins.faults.IndexingException;
import org.gcube.application.cms.plugins.implementations.Default3PhaseManager;
import org.gcube.application.cms.plugins.reports.EventExecutionReport;
import org.gcube.application.cms.plugins.reports.Report;
import org.gcube.application.cms.plugins.reports.StepExecutionReport;
import org.gcube.application.cms.plugins.requests.BaseRequest;
import org.gcube.application.cms.plugins.requests.IndexDocumentRequest;
import org.gcube.application.cms.serialization.Serialization;
import org.gcube.application.geoportal.common.model.JSONPathWrapper;
@ -25,10 +18,8 @@ import org.gcube.application.geoportal.common.model.document.Project;
import org.gcube.application.geoportal.common.model.document.access.Access;
import org.gcube.application.geoportal.common.model.document.access.AccessPolicy;
import org.gcube.application.geoportal.common.model.document.filesets.RegisteredFileSet;
import org.gcube.application.geoportal.common.model.document.lifecycle.LifecycleInformation;
import org.gcube.application.geoportal.common.model.document.relationships.RelationshipNavigationObject;
import org.gcube.application.geoportal.common.model.legacy.report.ConstraintCheck;
import org.gcube.application.geoportal.common.model.rest.ConfigurationException;
import java.io.IOException;
import java.util.ArrayList;

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concessioni-model/CHANGELOG.md
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@ -4,6 +4,9 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm
This library contains custom BEANS for the support of GNA "concessioni" use case
## [v1.0.2] - 2022-12-07
- Pom updates
## [v1.0.1] - 2022-01-17
- Defaults Evaluation

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concessioni-model/pom.xml
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@ -6,14 +6,14 @@
<groupId>org.gcube.application.cms</groupId>
<artifactId>concessioni-model</artifactId>
<version>1.0.1</version>
<version>1.0.2</version>
<name>GNA Concessioni Model</name>
<parent>
<groupId>org.gcube.application.cms</groupId>
<artifactId>gcube-cms-suite</artifactId>
<version>1.0.2</version>
<version>1.0.3</version>
</parent>
<properties>

3
dataminer-plugins/CHANGELOG.md
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@ -4,5 +4,8 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm
This library contains gcube-cms plugins for processing via gCube Dataminer
## [v1.0.1] - 2022-12-07
- Pom updates
## [v1.0.0] - 2022-02-24
- First release

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dataminer-plugins/pom.xml
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@ -5,14 +5,14 @@
<modelVersion>4.0.0</modelVersion>
<artifactId>dataminer-plugins</artifactId>
<version>1.0.0</version>
<version>1.0.1</version>
<name>gCube CMS - Dataminer Plugins</name>
<parent>
<groupId>org.gcube.application.cms</groupId>
<artifactId>gcube-cms-suite</artifactId>
<version>1.0.2</version>
<version>1.0.3</version>
</parent>
<dependencyManagement>

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default-lc-managers/CHANGELOG.md Normal file
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@ -0,0 +1,8 @@
This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
# Changelog for org.gcube.application.cms.ckan-plugin
This library contains default Lifecycle Managers handlers
## [v1.0.0] - 2022-02-24
- First release

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default-lc-managers/FUNDING.md Normal file
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@ -0,0 +1,26 @@
# Acknowledgments
The projects leading to this software have received funding from a series of European Union programmes including:
- the Sixth Framework Programme for Research and Technological Development
- [DILIGENT](https://cordis.europa.eu/project/id/004260) (grant no. 004260).
- the Seventh Framework Programme for research, technological development and demonstration
- [D4Science](https://cordis.europa.eu/project/id/212488) (grant no. 212488);
- [D4Science-II](https://cordis.europa.eu/project/id/239019) (grant no.239019);
- [ENVRI](https://cordis.europa.eu/project/id/283465) (grant no. 283465);
- [iMarine](https://cordis.europa.eu/project/id/283644) (grant no. 283644);
- [EUBrazilOpenBio](https://cordis.europa.eu/project/id/288754) (grant no. 288754).
- the H2020 research and innovation programme
- [SoBigData](https://cordis.europa.eu/project/id/654024) (grant no. 654024);
- [PARTHENOS](https://cordis.europa.eu/project/id/654119) (grant no. 654119);
- [EGI-Engage](https://cordis.europa.eu/project/id/654142) (grant no. 654142);
- [ENVRI PLUS](https://cordis.europa.eu/project/id/654182) (grant no. 654182);
- [BlueBRIDGE](https://cordis.europa.eu/project/id/675680) (grant no. 675680);
- [PerformFISH](https://cordis.europa.eu/project/id/727610) (grant no. 727610);
- [AGINFRA PLUS](https://cordis.europa.eu/project/id/731001) (grant no. 731001);
- [DESIRA](https://cordis.europa.eu/project/id/818194) (grant no. 818194);
- [ARIADNEplus](https://cordis.europa.eu/project/id/823914) (grant no. 823914);
- [RISIS 2](https://cordis.europa.eu/project/id/824091) (grant no. 824091);
- [EOSC-Pillar](https://cordis.europa.eu/project/id/857650) (grant no. 857650);
- [Blue Cloud](https://cordis.europa.eu/project/id/862409) (grant no. 862409);
- [SoBigData-PlusPlus](https://cordis.europa.eu/project/id/871042) (grant no. 871042);

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@ -0,0 +1,312 @@
# European Union Public Licence V. 1.1
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## 9. Additional agreements
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## 11. Information to the public
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## 14. Jurisdiction
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## 15. Applicable Law
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the Licensor resides or has his registered office.
This licence shall be governed by the Belgian law if:
- a litigation arises between the European Commission, as a Licensor, and any
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## Appendix
“Compatible Licences” according to article 5 EUPL are:
- GNU General Public License (GNU GPL) v. 2
- Open Software License (OSL) v. 2.1, v. 3.0
- Common Public License v. 1.0
- Eclipse Public License v. 1.0
- Cecill v. 2.0

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gCube CMS Suite : default-lc-managers
--------------------------------------------------
gCube CMS Suite is a set of components designed to manage complex space-temporal Documents called Projects defined in Use Case Descriptors.
This library contains the default Lifecycle Manager handler plugins.
## Built with
* [gCube SmartGears] (https://gcube.wiki.gcube-system.org/gcube/SmartGears) - The gCube SmartGears framework
* [OpenJDK](https://openjdk.java.net/) - The JDK used
* [JAX-RS](https://github.com/eclipse-ee4j/jaxrs-api) - Java™ API for RESTful Web Services
* [Jersey](https://jersey.github.io/) - JAX-RS runtime
* [Maven](https://maven.apache.org/) - Dependency Management
## Documentation
Documentation can be found [here](https://gcube.wiki.gcube-system.org/gcube/GeoPortal_Service).
## Change log
See [CHANGELOG.md](CHANGELOG.md).
## License
This project is licensed under the EUPL V.1.1 License - see the [LICENSE.md](LICENSE.md) file for details.
## About the gCube Framework
This software is part of the [gCubeFramework](https://www.gcube-system.org/ "gCubeFramework"): an
open-source software toolkit used for building and operating Hybrid Data
Infrastructures enabling the dynamic deployment of Virtual Research Environments
by favouring the realisation of reuse oriented policies.
The projects leading to this software have received funding from a series of European Union programmes including:
- the Sixth Framework Programme for Research and Technological Development
- DILIGENT (grant no. 004260).
- the Seventh Framework Programme for research, technological development and demonstration
- D4Science (grant no. 212488);
- D4Science-II (grant no.239019);
- ENVRI (grant no. 283465);
- iMarine(grant no. 283644);
- EUBrazilOpenBio (grant no. 288754).
- the H2020 research and innovation programme
- SoBigData (grant no. 654024);
- PARTHENOS (grant no. 654119);
- EGIEngage (grant no. 654142);
- ENVRIplus (grant no. 654182);
- BlueBRIDGE (grant no. 675680);
- PerformFish (grant no. 727610);
- AGINFRAplus (grant no. 731001);
- DESIRA (grant no. 818194);
- ARIADNEplus (grant no. 823914);
- RISIS2 (grant no. 824091);

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<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<artifactId>default-lc-managers</artifactId>
<version>1.0.0</version>
<name>gCube CMS - Default LC Managers</name>
<parent>
<groupId>org.gcube.application.cms</groupId>
<artifactId>gcube-cms-suite</artifactId>
<version>1.0.3</version>
</parent>
<properties>
<gitBaseUrl>https://code-repo.d4science.org/gCubeSystem</gitBaseUrl>
</properties>
<scm>
<connection>scm:git:${gitBaseUrl}/gcube-cms-suite</connection>
<developerConnection>scm:git:${gitBaseUrl}/gcube-cms-suite</developerConnection>
<url>${gitBaseUrl}/gcube-cms-suite</url>
</scm>
<dependencyManagement>
<dependencies>
<dependency>
<groupId>org.gcube.application.cms</groupId>
<artifactId>cms-plugin-framework</artifactId>
<version>${plugin-framework-version}</version>
<type>pom</type>
<scope>import</scope>
</dependency>
</dependencies>
</dependencyManagement>
<dependencies>
<dependency>
<groupId>org.gcube.application.cms</groupId>
<artifactId>cms-plugin-framework</artifactId>
</dependency>
<dependency>
<groupId>org.gcube.application.cms</groupId>
<artifactId>cms-test-commons</artifactId>
<scope>test</scope>
</dependency>
</dependencies>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-assembly-plugin</artifactId>
<executions>
<execution>
<id>make-uberjar</id>
<phase>package</phase>
</execution>
<execution>
<id>make-servicearchive</id>
<phase>package</phase>
</execution>
</executions>
</plugin>
</plugins>
</build>
</project>

0
cms-plugin-framework/src/main/java/org/gcube/application/cms/plugins/implementations/AbstractLifeCycleManager.java → default-lc-managers/src/main/java/org/gcube/application/cms/plugins/implementations/AbstractLifeCycleManager.java
View File

0
cms-plugin-framework/src/main/java/org/gcube/application/cms/plugins/implementations/AbstractPlugin.java → default-lc-managers/src/main/java/org/gcube/application/cms/plugins/implementations/AbstractPlugin.java
View File

2
cms-plugin-framework/src/main/java/org/gcube/application/cms/plugins/implementations/Default3PhaseManager.java → default-lc-managers/src/main/java/org/gcube/application/cms/plugins/implementations/Default3PhaseManager.java
View File

@ -10,11 +10,9 @@ import org.gcube.application.cms.plugins.faults.EventException;
import org.gcube.application.cms.plugins.faults.InvalidPluginRequestException;
import org.gcube.application.cms.plugins.faults.MaterializationException;
import org.gcube.application.cms.plugins.implementations.executions.GuardedStepExecution;
import org.gcube.application.cms.plugins.reports.DocumentHandlingReport;
import org.gcube.application.cms.plugins.reports.EventExecutionReport;
import org.gcube.application.cms.plugins.reports.StepExecutionReport;
import org.gcube.application.cms.plugins.requests.BaseRequest;
import org.gcube.application.cms.plugins.requests.StepExecutionRequest;
import org.gcube.application.geoportal.common.model.configuration.Configuration;
import org.gcube.application.geoportal.common.model.configuration.Index;
import org.gcube.application.geoportal.common.model.document.lifecycle.LifecycleInformation;

0
cms-plugin-framework/src/main/java/org/gcube/application/cms/plugins/implementations/RoleManager.java → default-lc-managers/src/main/java/org/gcube/application/cms/plugins/implementations/RoleManager.java
View File

5
cms-plugin-framework/src/main/java/org/gcube/application/cms/plugins/implementations/SimpleLifeCycleManager.java → default-lc-managers/src/main/java/org/gcube/application/cms/plugins/implementations/SimpleLifeCycleManager.java
View File

@ -2,10 +2,6 @@ package org.gcube.application.cms.plugins.implementations;
import lombok.extern.slf4j.Slf4j;
import org.bson.Document;
import org.gcube.application.cms.implementations.faults.InvalidUserRoleException;
import org.gcube.application.cms.implementations.faults.ProjectNotFoundException;
import org.gcube.application.cms.implementations.faults.RegistrationException;
import org.gcube.application.cms.implementations.faults.UnauthorizedAccess;
import org.gcube.application.cms.plugins.IndexerPluginInterface;
import org.gcube.application.cms.plugins.LifecycleManager;
import org.gcube.application.cms.plugins.MaterializationPlugin;
@ -228,6 +224,7 @@ public class SimpleLifeCycleManager extends AbstractLifeCycleManager implements
new MaterializationRequest(request.getUseCaseDescriptor(),request.getCaller(), request.getContext(), request.getDocument());
Document params = new Document();
params.putAll(parameters);
String workspace = request.getUseCaseDescriptor().getId() + request.getContext().getId();
params.put("workspace", Files.fixFilename(workspace));

0
cms-plugin-framework/src/main/java/org/gcube/application/cms/plugins/implementations/executions/GuardedEventManager.java → default-lc-managers/src/main/java/org/gcube/application/cms/plugins/implementations/executions/GuardedEventManager.java
View File

0
cms-plugin-framework/src/main/java/org/gcube/application/cms/plugins/implementations/executions/GuardedExecution.java → default-lc-managers/src/main/java/org/gcube/application/cms/plugins/implementations/executions/GuardedExecution.java
View File

2
cms-plugin-framework/src/main/java/org/gcube/application/cms/plugins/implementations/executions/GuardedStepExecution.java → default-lc-managers/src/main/java/org/gcube/application/cms/plugins/implementations/executions/GuardedStepExecution.java
View File

@ -1,8 +1,8 @@
package org.gcube.application.cms.plugins.implementations.executions;
import org.gcube.application.cms.plugins.implementations.RoleManager;
import lombok.NonNull;
import org.gcube.application.cms.plugins.faults.InsufficientPrivileges;
import org.gcube.application.cms.plugins.implementations.RoleManager;
import org.gcube.application.cms.plugins.reports.StepExecutionReport;
import org.gcube.application.cms.plugins.requests.StepExecutionRequest;
import org.gcube.application.geoportal.common.model.plugins.OperationDescriptor;

0
cms-plugin-framework/src/test/java/org/gcube/application/cms/plugins/SimpleLifecycleTests.java → default-lc-managers/src/test/java/org/gcube/application/cms/plugins/SimpleLifecycleTests.java
View File

3
geoportal-client/CHANGELOG.md
View File

@ -2,6 +2,9 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm
# Changelog for org.gcube.application.geoportal-client
## [v1.1.1] - 2022-12-07
- Pom updates
## [v1.1.0] - 2022-02-01

4
geoportal-client/pom.xml
View File

@ -4,14 +4,14 @@
<modelVersion>4.0.0</modelVersion>
<groupId>org.gcube.application</groupId>
<artifactId>geoportal-client</artifactId>
<version>1.1.0</version>
<version>1.1.1</version>
<name>Geoportal Client</name>
<parent>
<groupId>org.gcube.application.cms</groupId>
<artifactId>gcube-cms-suite</artifactId>
<version>1.0.2</version>
<version>1.0.3</version>
</parent>

3
geoportal-common/CHANGELOG.md
View File

@ -2,6 +2,9 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm
# Changelog for org.gcube.application.geoportal-common
## [v1.0.10] - 2022-12-07
- Pom updates
# [v1.0.9] - 2022-01-17
- Minor fixes in model
- Schema and jsonPath support

4
geoportal-common/pom.xml
View File

@ -3,14 +3,14 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<artifactId>geoportal-common</artifactId>
<version>1.0.9</version>
<version>1.0.10</version>
<name>Geoportal Common</name>
<parent>
<groupId>org.gcube.application.cms</groupId>
<artifactId>gcube-cms-suite</artifactId>
<version>1.0.2</version>
<version>1.0.3</version>
</parent>
<properties>

4
geoportal-common/src/main/java/org/gcube/application/geoportal/common/utils/tests/GCubeTest.java
View File

@ -14,8 +14,10 @@ public class GCubeTest {
// InterfaceConstants.SERVICE_CLASS="Application";
// InterfaceConstants.SERVICE_NAME="GeoPortal";
testContext = "/pred4s/preprod/preVRE";
// testContext= "/gcube/devsec/devVRE";
// testContext = "/d4science.research-infrastructures.eu/D4OS/GNA";
testContext= "/gcube/devsec/devVRE";
System.out.println("TEST CONTEXT = "+testContext);
return testContext;

4
geoportal-service/CHANGELOG.md
View File

@ -2,6 +2,10 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm
# Changelog for org.gcube.application.geoportal-service
## [v1.0.11] - 2022-12-07
- Pom updates
- Introduced module default-lc-managers
## [v1.0.10] 2022-01-17
- Plugin Management
- Profiled Document : FileSet Registration

2
geoportal-service/docs/architecture.rst
View File

@ -299,7 +299,7 @@ In order to facilitate the development of plugins, the following solutions may b
* extension of an already provided LifecycleManager in order to override default behaviour (e.g. as per *Concessioni* UCD, see suite module concessioni-lifecycle)
* extension of *org.gcube.application.cms.plugins.implementations.AbstractPlugin* class in order to leverage on common behaiovur (e.g. configuration management, error handling)
* extension of *org.gcube.application.cms.plugins.AbstractPlugin* class in order to leverage on common behaiovur (e.g. configuration management, error handling)
* extension of *org.gcube.application.cms.caches.AbstractScopedMap* or *org.gcube.application.cms.caches.TimedMap* for easy implementation of caches (respectively by context and global)

8
geoportal-service/pom.xml
View File

@ -4,14 +4,14 @@
<modelVersion>4.0.0</modelVersion>
<groupId>org.gcube.application</groupId>
<artifactId>geoportal-service</artifactId>
<version>1.0.10</version>
<version>1.0.11</version>
<name>Geoportal Service</name>
<packaging>war</packaging>
<parent>
<groupId>org.gcube.application.cms</groupId>
<artifactId>gcube-cms-suite</artifactId>
<version>1.0.2</version>
<version>1.0.3</version>
</parent>
<properties>
@ -63,6 +63,10 @@
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.gcube.application.cms</groupId>
<artifactId>default-lc-managers</artifactId>
</dependency>
<dependency>
<groupId>org.gcube.common</groupId>

3
geoportal-service/src/test/java/org/gcube/application/geoportal/service/BasicServiceTestUnit.java
View File

@ -72,4 +72,7 @@ public class BasicServiceTestUnit extends JerseyTest {
return Serialization.read(resString, clazz);
else return null;
}
}

2
geoportal-service/src/test/java/org/gcube/application/geoportal/service/framework/lifecycleManagers/RoleManagerTests.java
View File

@ -3,13 +3,11 @@ package org.gcube.application.geoportal.service.framework.lifecycleManagers;
import lombok.extern.slf4j.Slf4j;
import org.gcube.application.cms.plugins.implementations.RoleManager;
import org.gcube.application.cms.tests.TestProfiles;
import org.gcube.application.geoportal.common.model.document.accounting.User;
import org.gcube.application.geoportal.common.model.plugins.LifecycleManagerDescriptor;
import org.gcube.application.geoportal.common.model.rest.ConfigurationException;
import org.gcube.application.geoportal.common.model.useCaseDescriptor.HandlerDeclaration;
import org.junit.Test;
import java.util.Collection;
import java.util.List;
@Slf4j

16
geoportal-service/src/test/java/org/gcube/application/geoportal/service/profiledDocuments/ProfiledConcessioniTests.java
View File

@ -2,8 +2,11 @@ package org.gcube.application.geoportal.service.profiledDocuments;
import lombok.extern.slf4j.Slf4j;
import org.bson.Document;
import org.gcube.application.cms.implementations.ImplementationProvider;
import org.gcube.application.cms.implementations.WorkspaceManager;
import org.gcube.application.cms.serialization.Serialization;
import org.gcube.application.cms.tests.model.BasicTests;
import org.gcube.application.geoportal.common.model.JSONPathWrapper;
import org.gcube.application.geoportal.common.model.document.Project;
import org.gcube.application.geoportal.common.model.document.identification.SpatialReference;
import org.gcube.application.geoportal.common.model.document.lifecycle.LifecycleInformation;
@ -14,6 +17,7 @@ import org.gcube.application.geoportal.common.rest.InterfaceConstants;
import org.gcube.application.geoportal.common.utils.StorageUtils;
import org.gcube.application.geoportal.common.utils.tests.GCubeTest;
import org.gcube.application.geoportal.service.utils.UserUtils;
import org.gcube.common.storagehub.model.exceptions.StorageHubException;
import org.junit.Test;
import javax.management.relation.Relation;
@ -89,9 +93,21 @@ public class ProfiledConcessioniTests extends AbstractProfiledDocumentsTests{
assertTrue(doc.getLifecycleInformation().getLastOperationStatus().equals(LifecycleInformation.Status.OK));
assertTrue(doc.getIdentificationReferenceByType(SpatialReference.SPATIAL_REFERENCE_TYPE).size()==1);
System.out.println("Project "+doc.getId()+" published with spatial reference "+doc.getIdentificationReferenceByType(SpatialReference.SPATIAL_REFERENCE_TYPE).get(0));
// check deletion
delete(doc.getId(),true);
System.out.println("Deleted.");
}
@Test
public void testRelations() throws Exception {
assumeTrue(GCubeTest.isTestInfrastructureEnabled());

3
images-plugin/CHANGELOG.md
View File

@ -4,5 +4,8 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm
This library contains gcube-cms plugins for images materializations
## [v1.0.1] - 2022-12-07
- Pom updates
## [v1.0.0] - 2022-02-24
- First release

4
images-plugin/pom.xml
View File

@ -5,14 +5,14 @@
<modelVersion>4.0.0</modelVersion>
<artifactId>images-plugins</artifactId>
<version>1.0.0</version>
<version>1.0.1</version>
<name>gCube CMS - Images Plugins</name>
<parent>
<groupId>org.gcube.application.cms</groupId>
<artifactId>gcube-cms-suite</artifactId>
<version>1.0.2</version>
<version>1.0.3</version>
</parent>

3
notifications-plugins/CHANGELOG.md
View File

@ -4,5 +4,8 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm
This library contains gcube-cms plugins for notitfications events
## [v1.0.1] - 2022-12-07
- Pom updates
## [v1.0.0] - 2022-02-24
- First release

9
notifications-plugins/pom.xml
View File

@ -5,14 +5,14 @@
<modelVersion>4.0.0</modelVersion>
<artifactId>notifications-plugins</artifactId>
<version>1.0.0</version>
<version>1.0.1</version>
<name>gCube CMS - Notifications Plugins</name>
<parent>
<groupId>org.gcube.application.cms</groupId>
<artifactId>gcube-cms-suite</artifactId>
<version>1.0.2</version>
<version>1.0.3</version>
</parent>
<properties>
@ -51,7 +51,10 @@
<groupId>org.gcube.application.cms</groupId>
<artifactId>cms-plugin-framework</artifactId>
</dependency>
<dependency>
<groupId>org.gcube.application.cms</groupId>
<artifactId>default-lc-managers</artifactId>
</dependency>
<dependency>
<groupId>org.gcube.application.cms</groupId>
<artifactId>cms-test-commons</artifactId>

12
pom.xml
View File

@ -9,7 +9,7 @@
<groupId>org.gcube.application.cms</groupId>
<artifactId>gcube-cms-suite</artifactId>
<packaging>pom</packaging>
<version>1.0.2</version>
<version>1.0.3</version>
<name>Gcube CMS Suite</name>
<description>gCube CMS Suite is a set of components designed to manage complex space-temporal Documents defined by metadata Profiles.</description>
@ -34,7 +34,7 @@
<!-- <gcube-portal-bom-version>3.7.0-SNAPSHOT</gcube-portal-bom-version>-->
<!-- <storagehub-version-range>[2.0.0-SNAPSHOT,3.0.0-SNAPSHOT)</storagehub-version-range>-->
<!--&lt;!&ndash; <storagehub-version-range>[1.0.0,2.0.0-SNAPSHOT)</storagehub-version-range>&ndash;&gt;-->
<!-- <plugin-framework-version>1.0.1-SNAPSHOT</plugin-framework-version>-->
<!-- <plugin-framework-version>1.0.2-SNAPSHOT</plugin-framework-version>-->
</properties>
@ -56,12 +56,12 @@
<module>geoportal-common</module>
<module>cms-plugin-framework</module>
<!-- Client library -->
<module>geoportal-client</module>
<!-- Common Plugins -->
<module>default-lc-managers</module>
<module>sdi-plugins</module>
<module>notifications-plugins</module>
<module>dataminer-plugins</module>
@ -118,7 +118,13 @@
</dependency>
<!-- Common Plugins -->
<dependency>
<groupId>org.gcube.application.cms</groupId>
<artifactId>default-lc-managers</artifactId>
<version>[1.0.0,2.0.0-SNAPSHOT)</version>
</dependency>
<dependency>
<groupId>org.gcube.application.cms</groupId>
<artifactId>sdi-plugins</artifactId>

4
sdi-plugins/CHANGELOG.md
View File

@ -4,5 +4,9 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm
This library contains gcube-cms plugins for indexing and materializations in gCube SDI
## [v1.0.1] - 2022-12-07
- Pom updates
- Introduced module default-lc-managers
## [v1.0.0] - 2022-02-24
- First release

10
sdi-plugins/pom.xml
View File

@ -5,14 +5,14 @@
<modelVersion>4.0.0</modelVersion>
<artifactId>sdi-plugins</artifactId>
<version>1.0.0</version>
<version>1.0.1</version>
<name>gCube CMS - SDI Plugins</name>
<parent>
<groupId>org.gcube.application.cms</groupId>
<artifactId>gcube-cms-suite</artifactId>
<version>1.0.2</version>
<version>1.0.3</version>
</parent>
<properties>
@ -48,6 +48,12 @@
<artifactId>cms-plugin-framework</artifactId>
</dependency>
<dependency>
<groupId>org.gcube.application.cms</groupId>
<artifactId>default-lc-managers</artifactId>
</dependency>
<!-- SDI -->
<dependency>
<groupId>org.gcube.spatial.data</groupId>

16
sdi-plugins/src/main/java/org/gcube/application/cms/sdi/engine/SDIManagerWrapper.java
View File

@ -21,7 +21,9 @@ import org.gcube.application.geoportal.common.model.document.filesets.sdi.GeoSer
import org.gcube.application.geoportal.common.model.document.filesets.sdi.PlatformInfo;
import org.gcube.application.geoportal.common.model.rest.DatabaseConnection;
import org.gcube.application.geoportal.common.utils.Files;
import org.gcube.data.transfer.library.DataTransferClient;
import org.gcube.data.transfer.library.TransferResult;
import org.gcube.data.transfer.library.client.Client;
import org.gcube.data.transfer.library.faults.*;
import org.gcube.data.transfer.model.Destination;
import org.gcube.data.transfer.model.DestinationClashPolicy;
@ -259,9 +261,15 @@ public class SDIManagerWrapper extends SDIManager{
// remove actual files data
// TODO REMOVE HARDCODED PATCH
String path=gsInfo.getPersistencePath().replace("/srv/geoserver_data","geoserver");
log.info("Deleting files at {} [{}]",path,gsInfo.getPersistencePath());
getDtGeoServer().getWebClient().delete(path);
String path="geoserver/"+gsInfo.getPersistencePath();
log.info("Deleting files at {}@{}",path,getGeoserverHostName());
try{
Client dtClient = new Client("https://"+getGeoserverHostName());
dtClient.delete(path);
// getDtGeoServer().getWebClient().delete("geoserver/"+path);
}catch(Exception e){
throw new Exception("Data Transfer ERROR. Unable to delete files at "+getGeoserverHostName()+" PATH "+path,e);
}
break;
}
@ -273,7 +281,7 @@ public class SDIManagerWrapper extends SDIManager{
}catch(SDIInteractionException e){
throw e;
}catch (Throwable t){
throw new SDIInteractionException("Unexpected exception while trying to materialize File Set "+t.getMessage(),t);
throw new SDIInteractionException("Unexpected exception while trying to delete Layer : "+t.getMessage(),t);
}
}

17
sdi-plugins/src/main/java/org/gcube/application/cms/sdi/plugins/SDIMaterializerPlugin.java
View File

@ -181,13 +181,14 @@ public class SDIMaterializerPlugin extends AbstractPlugin implements Materializa
log.debug("Found matching {} ",s);
RegisteredFileSet registeredFileSet=Serialization.convert(wrapper.getByPath(s).get(0),RegisteredFileSet.class);
List<Object> toKeep = new ArrayList<>();
for(Object matObj : registeredFileSet.getMaterializations()){
Materialization mat = Serialization.convert(matObj,Materialization.class);
if(mat.getType().equals(GCubeSDILayer.GCUBE_SDY_LAYER_TYPE)) {
log.debug("Deleting Layer {} ",mat);
sdi.deleteLayer(Serialization.convert(matObj, GCubeSDILayer.class));
}else toKeep.add(matObj);
}
if(registeredFileSet.getMaterializations()!=null)
for(Object matObj : registeredFileSet.getMaterializations()){
Materialization mat = Serialization.convert(matObj,Materialization.class);
if(mat.getType().equals(GCubeSDILayer.GCUBE_SDY_LAYER_TYPE)) {
log.debug("Deleting Layer {} ",mat);
sdi.deleteLayer(Serialization.convert(matObj, GCubeSDILayer.class));
}else toKeep.add(matObj);
}
// Resetting remaining materializations
registeredFileSet.put(RegisteredFileSet.MATERIALIZATIONS,toKeep);
// Update FS in doc
@ -195,7 +196,7 @@ public class SDIMaterializerPlugin extends AbstractPlugin implements Materializa
}
// Resetting Document
report.setResultingDocument(Serialization.asDocument(wrapper.getValueCTX().jsonString()));
report.setResultingDocument(Document.parse(wrapper.getValueCTX().jsonString()));
}catch (SDIInteractionException e){
log.error("Unable to materialize "+request,e);
report.setStatus(Report.Status.ERROR);

637
test-data/profiledDocuments/sdiIndexed.json
View File

@ -1,142 +1,661 @@
{
"_id": "622625b4af5159176f7c550c",
"_version": "1.0.1",
"_id": "6385d4d5308f5c28c5ee0b03",
"_version": "1.0.12",
"_info":
{
"_creationInfo":
{
"_user":
{
"_username": "FAKE"
"_username": "fabio.sinibaldi"
},
"_context":
{
"_id": "/pred4s/preprod/preVRE",
"_name": "/preVRE"
},
"_instant": "2022-03-07T16:33:06.959"
"_instant": "2022-11-29T10:45:57.124"
},
"_lastEditInfo":
{
"_user":
{
"_username": "FAKE"
"_username": "fabio.sinibaldi"
},
"_context":
{
"_id": "/pred4s/preprod/preVRE",
"_name": "/preVRE"
},
"_instant": "2022-03-07T16:33:13.858"
"_instant": "2022-11-29T10:46:14.955"
},
"_access":
{
"_policy": "OPEN",
"_license": ""
"_license": "CC0-1.0"
}
},
"_profileID": "profiledConcessioni",
"_profileVersion": "1.0.0",
"_lifecycleInformation":
{
"_phase": "PUBLISHED",
"_lastInvokedStep": "APPROVE DRAFT",
"_phase": "Published",
"_lastInvokedStep": "APPROVE-SUBMITTED",
"_lastOperationStatus": "OK",
"_errorMessages":
[],
"_warningMessages":
[],
"_triggeredEvents":
[]
[],
"_notes": null
},
"_relationships": null,
"_spatialReference":
{
"type": "Point",
"bbox":
[
8.621178639172953,
40.62975046683799,
40.630257904721645,
8.62091913167495
],
"coordinates":
[
-32.00907926554869,
-32.00883133516304
]
},
"_temporalReference": null,
"_identificationReferences":
[
{
"geoJSON":
{
"type": "Point",
"crs":
{
"type": "name",
"properties":
{}
},
"bbox":
[
12.50360458353915,
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3
use-cases/CHANGELOG.md
View File

@ -2,6 +2,9 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm
# Changelog for org.gcube.application.geoportal-client
## [v1.0.3] - 2022-12-07
- Pom updates
## [v1.0.2] - 2022-02-24
- Updated parent

4
use-cases/pom.xml
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@ -4,12 +4,12 @@
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
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<version>1.0.2</version>
<version>1.0.3</version>
<name>CMS Use cases</name>
<parent>
<artifactId>gcube-cms-suite</artifactId>
<groupId>org.gcube.application.cms</groupId>
<version>1.0.2</version>
<version>1.0.3</version>
</parent>

2
use-cases/src/test/java/org/gcube/application/cms/usecases/ClearProjects.java
View File

@ -29,7 +29,7 @@ public class ClearProjects {
TokenSetter.set(GCubeTest.getContext());
Projects<Project> client=projects("profiledConcessioni").build();;
Projects<Project> client=projects("basic").build();;
ArrayList<String> toSkipIds=new ArrayList<>();

6
use-cases/src/test/java/org/gcube/application/cms/usecases/ExportConcessioniAsProjects.java
View File

@ -50,7 +50,7 @@ public class ExportConcessioniAsProjects {
public static void main(String[] args) throws InterruptedException, IOException {
// read from imported folder
File dir= new File("/Users/fabioisti/git/gcube-cms-suite/import1668778302348");
File dir= new File("/Users/fabioisti/git/gcube-cms-suite/import1669889538860");
// select only cluster
// dir = new File(dir,"cluster_1");
@ -67,7 +67,7 @@ public class ExportConcessioniAsProjects {
//String targetContext="/gcube/devsec/devVRE";
// String targetContext="/pred4s/preprod/preVRE";
Projects<Project> client=projects("profiledConcessioni").build();;
Projects<Project> client=projects("concessioni-estere").build();;
@ -110,7 +110,7 @@ public class ExportConcessioniAsProjects {
AtomicLong warnCount = new AtomicLong(0);
AtomicLong errCount = new AtomicLong(0);
ExecutorService service = Executors.newFixedThreadPool(1);
ExecutorService service = Executors.newFixedThreadPool(3);
long startProcess = System.currentTimeMillis();

49
use-cases/src/test/java/org/gcube/application/cms/usecases/PublishSubmitted.java Normal file
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@ -0,0 +1,49 @@
package org.gcube.application.cms.usecases;
import lombok.extern.slf4j.Slf4j;
import org.bson.Document;
import org.gcube.application.cms.tests.TokenSetter;
import org.gcube.application.geoportal.common.model.document.Project;
import org.gcube.application.geoportal.common.model.rest.QueryRequest;
import org.gcube.application.geoportal.common.model.rest.StepExecutionRequest;
import org.gcube.application.geoportal.common.rest.Projects;
import org.gcube.application.geoportal.common.utils.tests.GCubeTest;
import java.rmi.RemoteException;
import java.util.HashMap;
import java.util.concurrent.atomic.AtomicLong;
import static org.gcube.application.geoportal.client.plugins.GeoportalAbstractPlugin.projects;
@Slf4j
public class PublishSubmitted {
public static void main(String[] args) throws RemoteException {
TokenSetter.set(GCubeTest.getContext());
Projects<Project> client=projects("profiledConcessioni").build();
QueryRequest query = new QueryRequest();
query.setFilter(Document.parse("{\"_lifecycleInformation._lastOperationStatus\":{\"$eq\":\"OK\"},\"_lifecycleInformation._phase\":{\"$eq\":\"Pending Approval\"}}"));
AtomicLong count=new AtomicLong();
final StepExecutionRequest step = new StepExecutionRequest();
step.setStepID("APPROVE-SUBMITTED");
HashMap<String,String> errors = new HashMap<>();
client.query(query).forEachRemaining(project -> {
try{
log.info("Publishing N {}, ID {} ",count.incrementAndGet(),project.getId());
client.performStep(project.getId(), step);
}catch(Throwable t){
t.printStackTrace(System.err);
errors.put(project.getId(),t.getMessage());
}
});
System.out.println("Performed OP on "+count.get()+" projects.");
System.out.println("Errors count : "+errors.size());
errors.forEach((k,v) -> System.err.println(k+"\t"+v));
}
}

36
use-cases/src/test/java/org/gcube/application/cms/usecases/ws/DescribeWSFolder.java
View File

@ -1,6 +1,8 @@
package org.gcube.application.cms.usecases.ws;
import org.gcube.application.cms.tests.TestDocuments;
import org.gcube.application.cms.tests.TokenSetter;
import org.gcube.application.geoportal.common.model.JSONPathWrapper;
import org.gcube.common.storagehub.client.dsl.FolderContainer;
import org.gcube.common.storagehub.client.dsl.StorageHubClient;
import org.gcube.common.storagehub.model.exceptions.StorageHubException;
@ -18,16 +20,41 @@ public class DescribeWSFolder {
static StorageHubClient shc =null;
public static void main(String[] args) throws StorageHubException {
// String context="/gcube/devsec/devVRE";
String context="/pred4s/preprod/preVRE";
// String folderID="0518e4ad-0ef9-4cba-8d4f-8e315146acdd";
String context="/gcube/devsec/devVRE";
// context="/pred4s/preprod/preVRE";
String folderID="ded73475-f9b1-46c8-94f8-5b35c60667ce";
// folderID = "dd8c8609-0dfe-4dc8-a2b4-15c629e01413";
Boolean recursive = true;
TokenSetter.set(context);
shc= new StorageHubClient();
shc.openVREFolder().get().getDescription();
// NB LOADING FROM DOC
JSONPathWrapper wrapper = new JSONPathWrapper(TestDocuments.documentMap.get("sdiIndexed.json").getTheDocument().toJson());
// Deleted folders for
for(Object s : wrapper.getByPath("$.._folderID")){
try{
folderID = s.toString();
System.out.print("Checking "+folderID+"\t");
System.out.println("FOUND "+shc.open(folderID).asFolder().get().getName());
}catch (StorageHubException e){
System.out.println("Message from SG HUB : "+e.getMessage());
}
}
System.exit(1);
FolderContainer folder=shc.open(folderID).asFolder();
// FolderContainer folder = WorkspaceManager.getApplicationBaseFolder(shc);
@ -70,4 +97,7 @@ public class DescribeWSFolder {
value *= Long.signum(bytes);
return String.format("%.1f %ciB", value / 1024.0, ci.current());
}
}