Serialized Form

Package org.gcube.contentmanagement.graphtools.abstracts

Class org.gcube.contentmanagement.graphtools.abstracts.GenericStandaloneGraph extends org.jfree.ui.ApplicationFrame implements Serializable

serialVersionUID: 1L

Serialized Fields

big

boolean big

Package org.gcube.contentmanagement.graphtools.examples.graphsTypes

Class org.gcube.contentmanagement.graphtools.examples.graphsTypes.ExampleImage extends Applet implements Serializable

Package org.gcube.contentmanagement.graphtools.plotting.demo

Class org.gcube.contentmanagement.graphtools.plotting.demo.PieChartDemo1 extends org.jfree.ui.ApplicationFrame implements Serializable

Class org.gcube.contentmanagement.graphtools.plotting.demo.SpiderWebDemo1 extends org.jfree.ui.ApplicationFrame implements Serializable

Class org.gcube.contentmanagement.graphtools.plotting.demo.SpiderWebPlot extends org.jfree.chart.plot.Plot implements Serializable

serialVersionUID: -5376340422031599463L

Serialization Methods

readObject

private void readObject(ObjectInputStream stream)
                 throws IOException,
                        ClassNotFoundException

Provides serialization support.

Throws:

IOException - if there is an I/O error.

ClassNotFoundException - if there is a classpath problem.

writeObject

private void writeObject(ObjectOutputStream stream)
                  throws IOException

Provides serialization support.

Throws:

IOException - if there is an I/O error.

Serialized Fields

headPercent

double headPercent

The head radius as a percentage of the available drawing area.

interiorGap

double interiorGap

The space left around the outside of the plot as a percentage.

axisLabelGap

double axisLabelGap

The gap between the labels and the axes as a %age of the radius.

dataset

org.jfree.data.category.CategoryDataset dataset

The dataset.

maxValue

double maxValue

The maximum value we are plotting against on each category axis

dataExtractOrder

org.jfree.util.TableOrder dataExtractOrder

The data extract order (BY_ROW or BY_COLUMN). This denotes whether the data series are stored in rows (in which case the category names are derived from the column keys) or in columns (in which case the category names are derived from the row keys).

startAngle

double startAngle

The starting angle.

direction

org.jfree.util.Rotation direction

The direction for drawing the radar axis & plots.

seriesPaintList

org.jfree.util.PaintList seriesPaintList

The series paint list.

seriesOutlinePaintList

org.jfree.util.PaintList seriesOutlinePaintList

The series outline paint list.

seriesOutlineStrokeList

org.jfree.util.StrokeList seriesOutlineStrokeList

The series outline stroke list.

labelFont

Font labelFont

The font used to display the category labels.

labelGenerator

org.jfree.chart.labels.CategoryItemLabelGenerator labelGenerator

The label generator.

webFilled

boolean webFilled

controls if the web polygons are filled or not

toolTipGenerator

org.jfree.chart.labels.CategoryToolTipGenerator toolTipGenerator

A tooltip generator for the plot (null permitted).

urlGenerator

org.jfree.chart.urls.CategoryURLGenerator urlGenerator

A URL generator for the plot (null permitted).

Class org.gcube.contentmanagement.graphtools.plotting.demo.TimeSeriesChartDemo1 extends org.jfree.ui.ApplicationFrame implements Serializable

Package org.gcube.contentmanagement.graphtools.plotting.graphs

Class org.gcube.contentmanagement.graphtools.plotting.graphs.GaussianDistributionGraph extends GenericStandaloneGraph implements Serializable

serialVersionUID: 1L

Serialized Fields

mean

double mean

variance

double variance

Class org.gcube.contentmanagement.graphtools.plotting.graphs.HistogramGraph extends GenericStandaloneGraph implements Serializable

serialVersionUID: 1L

Class org.gcube.contentmanagement.graphtools.plotting.graphs.LineGraph extends GenericStandaloneGraph implements Serializable

serialVersionUID: 1L

Class org.gcube.contentmanagement.graphtools.plotting.graphs.NumericSeriesGraph extends GenericStandaloneGraph implements Serializable

serialVersionUID: 1L

Class org.gcube.contentmanagement.graphtools.plotting.graphs.PieGraph extends GenericStandaloneGraph implements Serializable

serialVersionUID: 1L

Class org.gcube.contentmanagement.graphtools.plotting.graphs.RadarGraph extends GenericStandaloneGraph implements Serializable

serialVersionUID: 1L

Class org.gcube.contentmanagement.graphtools.plotting.graphs.ScatterGraphGeneric extends GenericStandaloneGraph implements Serializable

serialVersionUID: 1L

Class org.gcube.contentmanagement.graphtools.plotting.graphs.ScatterGraphNumeric extends GenericStandaloneGraph implements Serializable

serialVersionUID: 1L

Class org.gcube.contentmanagement.graphtools.plotting.graphs.TimeSeriesGraph extends GenericStandaloneGraph implements Serializable

serialVersionUID: 1L

Serialized Fields

timeseriesformat

String timeseriesformat

Class org.gcube.contentmanagement.graphtools.plotting.graphs.TransectLineGraph extends GenericStandaloneGraph implements Serializable

serialVersionUID: 1L

Package org.gcube.contentmanagement.lexicalmatcher.analysis.guesser.treeStructure.graph

Class org.gcube.contentmanagement.lexicalmatcher.analysis.guesser.treeStructure.graph.CustomListenableDirectedWeightedGraph extends org.jgrapht.graph.ListenableDirectedWeightedGraph<V,E> implements Serializable

Class org.gcube.contentmanagement.lexicalmatcher.analysis.guesser.treeStructure.graph.CustomWeightedEdge extends org.jgrapht.graph.DefaultWeightedEdge implements Serializable

Serialized Fields

weight

double weight

o1

Object o1

o2

Object o2

Class org.gcube.contentmanagement.lexicalmatcher.analysis.guesser.treeStructure.graph.GraphDisplayer extends JApplet implements Serializable

Serialized Fields

m_jgAdapter

org.jgrapht.ext.JGraphModelAdapter<V,E> m_jgAdapter

newxposition

int newxposition

newyposition

int newyposition

g

CustomListenableDirectedWeightedGraph<V,E> g

nodesCounter

int nodesCounter

VertexNames

ArrayList<E> VertexNames

Edges

HashMap<K,V> Edges

Class org.gcube.contentmanagement.lexicalmatcher.analysis.guesser.treeStructure.graph.GraphFramer extends Frame implements Serializable

Serialized Fields

graphDisplayer

GraphDisplayer graphDisplayer

Class org.gcube.contentmanagement.lexicalmatcher.analysis.guesser.treeStructure.graph.GraphGeneratorApplet extends JApplet implements Serializable

Serialized Fields

m_jgAdapter

org.jgrapht.ext.JGraphModelAdapter<V,E> m_jgAdapter

Class org.gcube.contentmanagement.lexicalmatcher.analysis.guesser.treeStructure.graph.RelationEdge extends org.jgrapht.graph.DefaultWeightedEdge implements Serializable

Serialized Fields

relationName

String relationName

indexFrom

long indexFrom

indexTo

long indexTo

weight

BigInteger weight

categoryFrom

String categoryFrom

categoryTo

String categoryTo

Package org.gcube.dataanalysis.ecoengine.clustering

Class org.gcube.dataanalysis.ecoengine.clustering.XMeans extends weka.clusterers.RandomizableClusterer implements Serializable

serialVersionUID: -7941793078404132616L

Serialized Fields

m_Instances

weka.core.Instances m_Instances

training instances.

m_Model

weka.core.Instances m_Model

model information, should increase readability.

m_ReplaceMissingFilter

weka.filters.unsupervised.attribute.ReplaceMissingValues m_ReplaceMissingFilter

replace missing values in training instances.

m_BinValue

double m_BinValue

Distance value between true and false of binary attributes and "same" and "different" of nominal attributes (default = 1.0).

m_Bic

double m_Bic

BIC-Score of the current model.

m_Mle

double[] m_Mle

Distortion.

m_MaxIterations

int m_MaxIterations

maximum overall iterations.

m_MaxKMeans

int m_MaxKMeans

maximum iterations to perform Kmeans part if negative, iterations are not checked.

m_MaxKMeansForChildren

int m_MaxKMeansForChildren

see above, but for kMeans of splitted clusters.

m_NumClusters

int m_NumClusters

The actual number of clusters.

m_MinNumClusters

int m_MinNumClusters

min number of clusters to generate.

m_MaxNumClusters

int m_MaxNumClusters

max number of clusters to generate.

m_DistanceF

weka.core.DistanceFunction m_DistanceF

the distance function used.

m_ClusterCenters

weka.core.Instances m_ClusterCenters

cluster centers.

m_InputCenterFile

File m_InputCenterFile

file name of the output file for the cluster centers.

m_DebugVectorsInput

Reader m_DebugVectorsInput

input file for the random vectors --> USED FOR DEBUGGING.

m_DebugVectorsIndex

int m_DebugVectorsIndex

the index for the current debug vector.

m_DebugVectors

weka.core.Instances m_DebugVectors

all the debug vectors.

m_DebugVectorsFile

File m_DebugVectorsFile

file name of the input file for the random vectors.

m_CenterInput

Reader m_CenterInput

input file for the cluster centers.

m_OutputCenterFile

File m_OutputCenterFile

file name of the output file for the cluster centers.

m_CenterOutput

PrintWriter m_CenterOutput

output file for the cluster centers.

m_ClusterAssignments

int[] m_ClusterAssignments

temporary variable holding cluster assignments while iterating.

m_CutOffFactor

double m_CutOffFactor

cutoff factor - percentage of splits done in Improve-Structure part only relevant, if all children lost.

m_KDTree

weka.core.neighboursearch.KDTree m_KDTree

KDTrees class if KDTrees are used.

m_UseKDTree

boolean m_UseKDTree

whether to use the KDTree (the KDTree is only initialized to be configurable from the GUI).

m_IterationCount

int m_IterationCount

counts iterations done in main loop.

m_KMeansStopped

int m_KMeansStopped

counter to say how often kMeans was stopped by loop counter.

m_NumSplits

int m_NumSplits

Number of splits prepared.

m_NumSplitsDone

int m_NumSplitsDone

Number of splits accepted (including cutoff factor decisions).

m_NumSplitsStillDone

int m_NumSplitsStillDone

Number of splits accepted just because of cutoff factor.

m_DebugLevel

int m_DebugLevel

level of debug output, 0 is no output.

m_CurrDebugFlag

boolean m_CurrDebugFlag

Flag: I'm debugging.

Package org.gcube.dataanalysis.ecoengine.configuration

Class org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration extends LexicalEngineConfiguration implements Serializable

serialVersionUID: 1L

Serialized Fields

configPath

String configPath

persistencePath

String persistencePath

tableSpace

String tableSpace

endpoints

List<E> endpoints

numberOfResources

Integer numberOfResources

model

String model

generator

String generator

gcubeScope

String gcubeScope

generalProperties

HashMap<K,V> generalProperties

Package org.gcube.dataanalysis.ecoengine.evaluation.bioclimate

Class org.gcube.dataanalysis.ecoengine.evaluation.bioclimate.BioClimateGraph extends GenericStandaloneGraph implements Serializable

serialVersionUID: 1L

Serialized Fields

max

double max

min

double min

Package org.gcube.dataanalysis.ecoengine.models.cores.neuralnetworks

Class org.gcube.dataanalysis.ecoengine.models.cores.neuralnetworks.Neural_Network extends Object implements Serializable

serialVersionUID: 1L

Serialized Fields

griglia

Neuron[][] griglia

soglia

double soglia

maxcycle

double maxcycle

acceptanceThr

double acceptanceThr

Class org.gcube.dataanalysis.ecoengine.models.cores.neuralnetworks.Neuron extends Object implements Serializable

serialVersionUID: 1L

Serialized Fields

attivfun

int attivfun

W

float[] W

Package org.gcube.dataanalysis.ecoengine.models.cores.neuralnetworks.neurosolutions

Class org.gcube.dataanalysis.ecoengine.models.cores.neuralnetworks.neurosolutions.NeuralNet extends Object implements Serializable

Serialized Fields

neurons

Neuron[] neurons

synapses

Synapse[] synapses

nolayers

int nolayers

layers

org.gcube.dataanalysis.ecoengine.models.cores.neuralnetworks.neurosolutions.NeuralNet.Layer[] layers

randomizer

Randomizer randomizer

topology

int[] topology

Class org.gcube.dataanalysis.ecoengine.models.cores.neuralnetworks.neurosolutions.Neuron extends Object implements Serializable

Serialized Fields

id

int id

threshold

double threshold

prevthreshold

double prevthreshold

layer

int layer

output

double output

axonfamily

char axonfamily

momentumrate

double momentumrate

axonfuncflatness

double axonfuncflatness

learningratecoefficient

double learningratecoefficient

neuronsout

Neuron[] neuronsout

neuronsin

Neuron[] neuronsin

synapsesout

Synapse[] synapsesout

synapsesin

Synapse[] synapsesin

error

double error

cumulthresholddiff

double cumulthresholddiff

Class org.gcube.dataanalysis.ecoengine.models.cores.neuralnetworks.neurosolutions.Randomizer extends Object implements Serializable

Serialized Fields

random

Random random

Class org.gcube.dataanalysis.ecoengine.models.cores.neuralnetworks.neurosolutions.Synapse extends Object implements Serializable

Serialized Fields

weight

double weight

prevweight

double prevweight

cumulweightdiff

double cumulweightdiff

sourceunit

Neuron sourceunit

targetunit

Neuron targetunit

Package org.gcube.dataanalysis.ecoengine.utils

Class org.gcube.dataanalysis.ecoengine.utils.Tuple extends Object implements Serializable

serialVersionUID: 1L

Serialized Fields

elements

ArrayList<E> elements

Package org.gcube.portlets.user.timeseries.charts.support.assertions

Class org.gcube.portlets.user.timeseries.charts.support.assertions.Assertion extends Object implements Serializable

serialVersionUID: -2007903339251667541L

Package org.gcube.portlets.user.timeseries.charts.support.exceptions

Class org.gcube.portlets.user.timeseries.charts.support.exceptions.InvalidParameterException extends Exception implements Serializable

serialVersionUID: -9108485633158199338L

Package org.gcube.portlets.user.timeseries.charts.support.tablemodel

Class org.gcube.portlets.user.timeseries.charts.support.tablemodel.FieldDescr extends Object implements Serializable

serialVersionUID: 532149221570962514L

Serialized Fields

alias

String alias

rawname

String rawname

Class org.gcube.portlets.user.timeseries.charts.support.tablemodel.TableDescr extends Object implements Serializable

serialVersionUID: -4850971456321479627L

Serialized Fields

name

String name

alias

String alias

fields

List<E> fields

Package org.gcube.portlets.user.timeseries.charts.support.types

Class org.gcube.portlets.user.timeseries.charts.support.types.GraphData extends Object implements Serializable

serialVersionUID: 930654337632116093L

Serialized Fields

data

List<E> data

minY

Number minY

maxY

Number maxY

Class org.gcube.portlets.user.timeseries.charts.support.types.GraphGroups extends Object implements Serializable

serialVersionUID: -466243452417462863L

Serialized Fields

graphs

Map<K,V> graphs

Class org.gcube.portlets.user.timeseries.charts.support.types.Point extends Object implements Serializable

serialVersionUID: 6164075295272357264L

Serialized Fields

label

String label

value

Number value

entries

List<E> entries

Class org.gcube.portlets.user.timeseries.charts.support.types.ValueEntry extends Object implements Serializable

serialVersionUID: -6765421417425929840L

Serialized Fields

label

String label

value

Number value