git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-analysis/EcologicalEngineGeoSpatialExtension@92164 82a268e6-3cf1-43bd-a215-b396298e98cf
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@ -2,7 +2,7 @@ package org.gcube.dataanalysis.geo.test;
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import org.gcube.contentmanagement.lexicalmatcher.utils.AnalysisLogger;
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import org.gcube.contentmanagement.lexicalmatcher.utils.AnalysisLogger;
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import org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration;
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import org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration;
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import org.gcube.dataanalysis.geo.retrieval.GeoIntersector;
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import org.gcube.dataanalysis.geo.matrixmodel.MatrixExtractor;
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public class TestChunkization {
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public class TestChunkization {
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@ -13,10 +13,10 @@ public class TestChunkization {
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// String layertitle = "Objectively Analyzed Climatology in [07-01-01 01:00] (3D) {World Ocean Atlas 09: Sea Water Temperature - annual: dods://thredds.research-infrastructures.eu/thredds/dodsC/public/netcdf/temperature_annual_1deg_ENVIRONMENT_OCEANS_.nc}";
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// String layertitle = "Objectively Analyzed Climatology in [07-01-01 01:00] (3D) {World Ocean Atlas 09: Sea Water Temperature - annual: dods://thredds.research-infrastructures.eu/thredds/dodsC/public/netcdf/temperature_annual_1deg_ENVIRONMENT_OCEANS_.nc}";
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long t0 = System.currentTimeMillis();
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long t0 = System.currentTimeMillis();
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AnalysisLogger.setLogger(cfg+AlgorithmConfiguration.defaultLoggerFile);
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AnalysisLogger.setLogger(cfg+AlgorithmConfiguration.defaultLoggerFile);
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GeoIntersector intersector = new GeoIntersector(null, cfg);
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MatrixExtractor intersector = new MatrixExtractor(null, cfg);
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// intersector.takeTimeSlice(layertitle, 0, -180, 180, -10, 10, 0, 1, 1);
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// intersector.takeTimeSlice(layertitle, 0, -180, 180, -10, 10, 0, 1, 1);
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// intersector.takeTimeSlice(layertitle, 0, -10, 10, -10, 10, 0,1, 1);
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// intersector.takeTimeSlice(layertitle, 0, -10, 10, -10, 10, 0,1, 1);
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intersector.takeTimeSlice(layertitle, 0, -180, 180, -90, 90, 0, 0.5, 0.5);
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intersector.takeTimeInstantMatrix(layertitle, 0, -180, 180, -90, 90, 0, 0.5, 0.5);
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System.out.println("ELAPSED TIME: "+(System.currentTimeMillis()-t0));
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System.out.println("ELAPSED TIME: "+(System.currentTimeMillis()-t0));
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}
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}
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}
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}
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@ -2,7 +2,7 @@ package org.gcube.dataanalysis.geo.test;
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import org.gcube.contentmanagement.lexicalmatcher.utils.AnalysisLogger;
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import org.gcube.contentmanagement.lexicalmatcher.utils.AnalysisLogger;
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import org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration;
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import org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration;
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import org.gcube.dataanalysis.geo.retrieval.GeoIntersector;
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import org.gcube.dataanalysis.geo.matrixmodel.MatrixExtractor;
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public class TestChunkizationLayer {
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public class TestChunkizationLayer {
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@ -14,9 +14,9 @@ public class TestChunkizationLayer {
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String layertitle = "FAO AQUATIC SPECIES DISTRIBUTION MAP OF MEGALASPIS CORDYLA";
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String layertitle = "FAO AQUATIC SPECIES DISTRIBUTION MAP OF MEGALASPIS CORDYLA";
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long t0 = System.currentTimeMillis();
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long t0 = System.currentTimeMillis();
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AnalysisLogger.setLogger(cfg+AlgorithmConfiguration.defaultLoggerFile);
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AnalysisLogger.setLogger(cfg+AlgorithmConfiguration.defaultLoggerFile);
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GeoIntersector intersector = new GeoIntersector(null, cfg);
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MatrixExtractor intersector = new MatrixExtractor(null, cfg);
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// intersector.takeTimeSlice(layertitle, 0, -10, 10, -10, 10, 0,1, 1);
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// intersector.takeTimeSlice(layertitle, 0, -10, 10, -10, 10, 0,1, 1);
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intersector.takeTimeSlice(layertitle, 0, -180, 180, -90, 90, 0, 0.5, 0.5);
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intersector.takeTimeInstantMatrix(layertitle, 0, -180, 180, -90, 90, 0, 0.5, 0.5);
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System.out.println("ELAPSED TIME: "+(System.currentTimeMillis()-t0));
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System.out.println("ELAPSED TIME: "+(System.currentTimeMillis()-t0));
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}
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}
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}
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}
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@ -8,8 +8,8 @@ import java.util.List;
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import org.gcube.contentmanagement.graphtools.utils.MathFunctions;
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import org.gcube.contentmanagement.graphtools.utils.MathFunctions;
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import org.gcube.contentmanagement.lexicalmatcher.utils.AnalysisLogger;
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import org.gcube.contentmanagement.lexicalmatcher.utils.AnalysisLogger;
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import org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration;
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import org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration;
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import org.gcube.dataanalysis.geo.meta.features.FeaturesManager;
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import org.gcube.dataanalysis.geo.infrastructure.GeoNetworkInspector;
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import org.gcube.dataanalysis.geo.retrieval.GeoIntersector;
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import org.gcube.dataanalysis.geo.matrixmodel.MatrixExtractor;
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import org.geotoolkit.metadata.iso.identification.DefaultDataIdentification;
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import org.geotoolkit.metadata.iso.identification.DefaultDataIdentification;
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import org.opengis.metadata.Metadata;
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import org.opengis.metadata.Metadata;
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import org.opengis.metadata.identification.Identification;
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import org.opengis.metadata.identification.Identification;
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@ -23,7 +23,7 @@ public class TestLayersRetrieval {
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public static void main(String[] args) throws Exception{
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public static void main(String[] args) throws Exception{
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long t0 = System.currentTimeMillis();
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long t0 = System.currentTimeMillis();
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AnalysisLogger.setLogger(cfg+AlgorithmConfiguration.defaultLoggerFile);
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AnalysisLogger.setLogger(cfg+AlgorithmConfiguration.defaultLoggerFile);
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FeaturesManager featurer = new FeaturesManager();
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GeoNetworkInspector featurer = new GeoNetworkInspector();
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featurer.setScope(null);
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featurer.setScope(null);
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List<Metadata> metae = featurer.getAllGNInfobyText("thredds", "1");
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List<Metadata> metae = featurer.getAllGNInfobyText("thredds", "1");
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System.out.println("ELAPSED TIME: "+(System.currentTimeMillis()-t0));
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System.out.println("ELAPSED TIME: "+(System.currentTimeMillis()-t0));
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@ -2,8 +2,8 @@ package org.gcube.dataanalysis.geo.test;
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import org.gcube.contentmanagement.lexicalmatcher.utils.AnalysisLogger;
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import org.gcube.contentmanagement.lexicalmatcher.utils.AnalysisLogger;
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import org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration;
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import org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration;
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import org.gcube.dataanalysis.geo.insertion.RasterTable;
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import org.gcube.dataanalysis.geo.matrixmodel.MatrixExtractor;
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import org.gcube.dataanalysis.geo.retrieval.GeoIntersector;
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import org.gcube.dataanalysis.geo.matrixmodel.RasterTable;
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public class TestRasterTable {
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public class TestRasterTable {
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@ -31,7 +31,7 @@ public class TestRasterTable {
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config.setParam("DatabaseURL","jdbc:postgresql://localhost/testdb");
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config.setParam("DatabaseURL","jdbc:postgresql://localhost/testdb");
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config.setParam("DatabaseDriver","org.postgresql.Driver");
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config.setParam("DatabaseDriver","org.postgresql.Driver");
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GeoIntersector intersector = new GeoIntersector(null, cfg);
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MatrixExtractor intersector = new MatrixExtractor(null, cfg);
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int t = 0;
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int t = 0;
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double x1 = -180;
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double x1 = -180;
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double x2 = 180;
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double x2 = 180;
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@ -41,7 +41,7 @@ public class TestRasterTable {
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double xResolution = 0.5;
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double xResolution = 0.5;
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double yResolution = 0.5;
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double yResolution = 0.5;
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double[][] slice = intersector.takeTimeSlice(layertitle, t, x1, x2, y1,y2,z,xResolution,yResolution);
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double[][] slice = intersector.takeTimeInstantMatrix(layertitle, t, x1, x2, y1,y2,z,xResolution,yResolution);
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RasterTable raster = new RasterTable(x1, x2, y1, y2, z, xResolution, yResolution, slice, config);
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RasterTable raster = new RasterTable(x1, x2, y1, y2, z, xResolution, yResolution, slice, config);
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raster.dumpGeoTable();
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raster.dumpGeoTable();
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@ -3,8 +3,8 @@ package org.gcube.dataanalysis.geo.test.maps;
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import org.gcube.contentmanagement.lexicalmatcher.utils.AnalysisLogger;
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import org.gcube.contentmanagement.lexicalmatcher.utils.AnalysisLogger;
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import org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration;
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import org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration;
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import org.gcube.dataanalysis.geo.algorithms.MapsComparator;
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import org.gcube.dataanalysis.geo.algorithms.MapsComparator;
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import org.gcube.dataanalysis.geo.insertion.RasterTable;
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import org.gcube.dataanalysis.geo.matrixmodel.MatrixExtractor;
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import org.gcube.dataanalysis.geo.retrieval.GeoIntersector;
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import org.gcube.dataanalysis.geo.matrixmodel.RasterTable;
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public class TestMapsComparison {
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public class TestMapsComparison {
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@ -3,8 +3,8 @@ package org.gcube.dataanalysis.geo.test.maps;
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import org.gcube.contentmanagement.lexicalmatcher.utils.AnalysisLogger;
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import org.gcube.contentmanagement.lexicalmatcher.utils.AnalysisLogger;
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import org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration;
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import org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration;
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import org.gcube.dataanalysis.geo.algorithms.MapsComparator;
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import org.gcube.dataanalysis.geo.algorithms.MapsComparator;
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import org.gcube.dataanalysis.geo.insertion.RasterTable;
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import org.gcube.dataanalysis.geo.matrixmodel.MatrixExtractor;
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import org.gcube.dataanalysis.geo.retrieval.GeoIntersector;
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import org.gcube.dataanalysis.geo.matrixmodel.RasterTable;
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public class TestMapsComparisonAquaMapsvsFAO {
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public class TestMapsComparisonAquaMapsvsFAO {
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@ -3,8 +3,8 @@ package org.gcube.dataanalysis.geo.test.maps;
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import org.gcube.contentmanagement.lexicalmatcher.utils.AnalysisLogger;
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import org.gcube.contentmanagement.lexicalmatcher.utils.AnalysisLogger;
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import org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration;
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import org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration;
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import org.gcube.dataanalysis.geo.algorithms.MapsComparator;
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import org.gcube.dataanalysis.geo.algorithms.MapsComparator;
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import org.gcube.dataanalysis.geo.insertion.RasterTable;
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import org.gcube.dataanalysis.geo.matrixmodel.MatrixExtractor;
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import org.gcube.dataanalysis.geo.retrieval.GeoIntersector;
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import org.gcube.dataanalysis.geo.matrixmodel.RasterTable;
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public class TestMapsComparisonExampleTCOM {
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public class TestMapsComparisonExampleTCOM {
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@ -3,8 +3,8 @@ package org.gcube.dataanalysis.geo.test.maps;
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import org.gcube.contentmanagement.lexicalmatcher.utils.AnalysisLogger;
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import org.gcube.contentmanagement.lexicalmatcher.utils.AnalysisLogger;
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import org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration;
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import org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration;
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import org.gcube.dataanalysis.geo.algorithms.MapsComparator;
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import org.gcube.dataanalysis.geo.algorithms.MapsComparator;
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import org.gcube.dataanalysis.geo.insertion.RasterTable;
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import org.gcube.dataanalysis.geo.matrixmodel.MatrixExtractor;
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import org.gcube.dataanalysis.geo.retrieval.GeoIntersector;
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import org.gcube.dataanalysis.geo.matrixmodel.RasterTable;
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public class TestMapsComparisonTemperature {
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public class TestMapsComparisonTemperature {
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@ -3,8 +3,8 @@ package org.gcube.dataanalysis.geo.test.maps;
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import org.gcube.contentmanagement.lexicalmatcher.utils.AnalysisLogger;
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import org.gcube.contentmanagement.lexicalmatcher.utils.AnalysisLogger;
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import org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration;
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import org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration;
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import org.gcube.dataanalysis.geo.algorithms.MapsComparator;
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import org.gcube.dataanalysis.geo.algorithms.MapsComparator;
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import org.gcube.dataanalysis.geo.insertion.RasterTable;
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import org.gcube.dataanalysis.geo.matrixmodel.MatrixExtractor;
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import org.gcube.dataanalysis.geo.retrieval.GeoIntersector;
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import org.gcube.dataanalysis.geo.matrixmodel.RasterTable;
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public class TestMapsComparisonTemperatureUUID {
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public class TestMapsComparisonTemperatureUUID {
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