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ecological-engine-external-algorithms
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git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-analysis/EcologicalEngineExternalAlgorithms@71700 82a268e6-3cf1-43bd-a215-b396298e98cf

This commit is contained in:
Gianpaolo Coro 2013-03-25 14:15:05 +00:00
parent 6f335c73e3
commit 27ab27035b
2 changed files with 19 additions and 2 deletions
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11
src/main/java/org/gcube/dataanalysis/StandardLocalExternalAlgorithm.java
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@ -8,8 +8,10 @@ import java.util.Map;
import org.gcube.contentmanagement.lexicalmatcher.utils.AnalysisLogger;
import org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration;
import org.gcube.dataanalysis.ecoengine.configuration.INFRASTRUCTURE;
import org.gcube.dataanalysis.ecoengine.datatypes.DatabaseType;
import org.gcube.dataanalysis.ecoengine.datatypes.PrimitiveType;
import org.gcube.dataanalysis.ecoengine.datatypes.StatisticalType;
import org.gcube.dataanalysis.ecoengine.datatypes.enumtypes.DatabaseParameters;
import org.gcube.dataanalysis.ecoengine.datatypes.enumtypes.PrimitiveTypes;
import org.gcube.dataanalysis.ecoengine.interfaces.Transducerer;
import org.gcube.dataanalysis.ecoengine.utils.ResourceFactory;
@ -26,6 +28,15 @@ public abstract class StandardLocalExternalAlgorithm implements Transducerer {
inputs.add(new PrimitiveType(Enum.class.getName(), itemsList, PrimitiveTypes.ENUMERATED, name, description, defaultvalue));
}
protected void addRemoteDatabaseInput(String name, String urlParameterName, String userParameterName, String passwordParameterName) {
inputs.add(new DatabaseType(DatabaseParameters.REMOTEDATABASERRNAME,name,"RR name"));
inputs.add(new DatabaseType(DatabaseParameters.REMOTEDATABASEURL,urlParameterName,"RR name"));
inputs.add(new DatabaseType(DatabaseParameters.REMOTEDATABASEUSERNAME,name,"RR name"));
inputs.add(new DatabaseType(DatabaseParameters.REMOTEDATABASEPASSWORD,name,"RR name"));
inputs.add(new DatabaseType(DatabaseParameters.REMOTEDATABASEDRIVER,name,"RR name"));
inputs.add(new DatabaseType(DatabaseParameters.REMOTEDATABASEDIALECT,name,"RR name"));
}
protected void addStringInput(String name, String description, String defaultvalue) {
inputs.add(new PrimitiveType(String.class.getName(), null, PrimitiveTypes.STRING, name, description, defaultvalue));
}

10
src/main/java/org/gcube/dataanalysis/fin/taxamatch/TaxaMatchTransducer.java
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@ -32,12 +32,17 @@ public class TaxaMatchTransducer extends StandardLocalExternalAlgorithm {
String species = getInputParameter(Species);
String genusOperator = getInputParameter(GenusOperator);
String speciesOperator = getInputParameter(SpeciesOperator);
/*
String databaseIP = "biodiversity.db.i-marine.research-infrastructures.eu";
String databaseUser = "postgres";
String databasePwd = "0b1s@d4sc13nc3";
String databaseName = "fishbase";
*/
String databaseIP = "biodiversity.db.i-marine.research-infrastructures.eu";
String databaseUser = "postgres";
String databasePwd = "0b1s@d4sc13nc3";
String databaseName = "fishbase";
log("Computing matching for " + genus + " " + species);
log("With operators: " + genusOperator + " " + speciesOperator);
if ((genus == null) || (species == null)) {
@ -76,6 +81,7 @@ public class TaxaMatchTransducer extends StandardLocalExternalAlgorithm {
addStringInput(Species, "Species", "morhua");
addEnumerateInput(operators.values(), GenusOperator, "Comparison Operator for Genus", "" + operators.EQUAL);
addEnumerateInput(operators.values(), SpeciesOperator, "Comparison Operator for Species", "" + operators.EQUAL);
// addRemoteDatabaseInput("FishBase");
}
}