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ecological-engine-external-algorithms
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git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-analysis/EcologicalEngineExternalAlgorithms@71687 82a268e6-3cf1-43bd-a215-b396298e98cf

This commit is contained in:
Gianpaolo Coro 2013-03-25 11:17:16 +00:00
parent 85b33bcba9
commit 6f335c73e3
2 changed files with 21 additions and 14 deletions
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31
src/main/java/org/gcube/dataanalysis/fin/taxamatch/TaxaMatchTransducer.java
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@ -40,23 +40,28 @@ public class TaxaMatchTransducer extends StandardLocalExternalAlgorithm {
log("Computing matching for " + genus + " " + species);
log("With operators: " + genusOperator + " " + speciesOperator);
func_Taxamatch func = new func_Taxamatch();
AnalysisLogger.getLogger().trace("TaxaMatcher Initialized");
String[] matches = func.func_Taxamatch(genus, species, genusOperator, speciesOperator, databaseIP, databaseUser, databasePwd, databaseName);
if ((matches == null) || (matches.length == 0)) {
log("No match");
if ((genus == null) || (species == null)) {
log("Void input");
addOutputString("Number of Matches", "0");
} else {
log("Found " + matches[0] + " matches");
addOutputString("Number of Matches", matches[0]);
String[] speciesn = matches[1].split("\n");
for (int i = 0; i < speciesn.length; i++) {
addOutputString("Match " + (i + 1), speciesn[i].trim());
func_Taxamatch func = new func_Taxamatch();
AnalysisLogger.getLogger().trace("TaxaMatcher Initialized");
String[] matches = func.func_Taxamatch(genus, species, genusOperator, speciesOperator, databaseIP, databaseUser, databasePwd, databaseName);
if ((matches == null) || (matches.length == 0)) {
log("No match");
addOutputString("Number of Matches", "0");
} else {
log("Found " + matches[0] + " matches");
addOutputString("Number of Matches", matches[0]);
String[] speciesn = matches[1].split("\n");
if (Integer.parseInt(matches[0]) > 0) {
for (int i = 0; i < speciesn.length; i++) {
addOutputString("Match " + (i + 1), speciesn[i].trim());
}
}
}
}
log(outputParameters);
}

4
src/main/java/org/gcube/dataanalysis/test/TestFinTaxaMatch.java
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@ -3,6 +3,7 @@ package org.gcube.dataanalysis.test;
import java.util.List;
import org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration;
import org.gcube.dataanalysis.ecoengine.datatypes.StatisticalType;
import org.gcube.dataanalysis.ecoengine.interfaces.ComputationalAgent;
import org.gcube.dataanalysis.ecoengine.processing.factories.TransducerersFactory;
import org.gcube.dataanalysis.ecoengine.test.regression.Regressor;
@ -17,6 +18,7 @@ public static void main(String[] args) throws Exception {
trans = TransducerersFactory.getTransducerers(testConfig());
trans.get(0).init();
Regressor.process(trans.get(0));
StatisticalType st = trans.get(0).getOutput();
trans = null;
}
@ -25,7 +27,7 @@ public static void main(String[] args) throws Exception {
AlgorithmConfiguration config = Regressor.getConfig();
config.setAgent("FIN_TAXA_MATCH");
config.setParam("Genus", "gadus");
config.setParam("Species", "morhua");
config.setParam("Species", "");
config.setParam("ComparisonOperatorforGenus", "EQUAL");
config.setParam("ComparisonOperatorforSpecies", "EQUAL");