Update for gCube Release 5.10.1

Reviewed-on: #2

.classpath

@@ -14,17 +14,20 @@
 	<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
 		<attributes>
 			<attribute name="maven.pomderived" value="true"/>
+			<attribute name="org.eclipse.jst.component.nondependency" value=""/>
 		</attributes>
 	</classpathentry>
 	<classpathentry kind="src" output="target/test-classes" path="src/test/java">
 		<attributes>
 			<attribute name="optional" value="true"/>
 			<attribute name="maven.pomderived" value="true"/>
+			<attribute name="test" value="true"/>
 		</attributes>
 	</classpathentry>
 	<classpathentry excluding="**" kind="src" output="target/test-classes" path="src/test/resources">
 		<attributes>
 			<attribute name="maven.pomderived" value="true"/>
+			<attribute name="test" value="true"/>
 		</attributes>
 	</classpathentry>
 	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">

.gitignore

@@ -0,0 +1 @@
+/target/

.project

@@ -5,11 +5,21 @@
 	<projects>
 	</projects>
 	<buildSpec>
+		<buildCommand>
+			<name>org.eclipse.wst.common.project.facet.core.builder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
 		<buildCommand>
 			<name>org.eclipse.jdt.core.javabuilder</name>
 			<arguments>
 			</arguments>
 		</buildCommand>
+		<buildCommand>
+			<name>org.eclipse.wst.validation.validationbuilder</name>
+			<arguments>
+			</arguments>
+		</buildCommand>
 		<buildCommand>
 			<name>org.eclipse.m2e.core.maven2Builder</name>
 			<arguments>
@@ -17,7 +27,10 @@
 		</buildCommand>
 	</buildSpec>
 	<natures>
+		<nature>org.eclipse.jem.workbench.JavaEMFNature</nature>
+		<nature>org.eclipse.wst.common.modulecore.ModuleCoreNature</nature>
 		<nature>org.eclipse.m2e.core.maven2Nature</nature>
 		<nature>org.eclipse.jdt.core.javanature</nature>
+		<nature>org.eclipse.wst.common.project.facet.core.nature</nature>
 	</natures>
 </projectDescription>

.settings/.gitignore

@@ -0,0 +1,2 @@
+/org.eclipse.ltk.core.refactoring.prefs
+/org.eclipse.wst.xsl.core.prefs

.settings/org.eclipse.jdt.core.prefs

@@ -1,12 +1,109 @@
 eclipse.preferences.version=1
+org.eclipse.jdt.core.compiler.annotation.inheritNullAnnotations=disabled
+org.eclipse.jdt.core.compiler.annotation.missingNonNullByDefaultAnnotation=ignore
+org.eclipse.jdt.core.compiler.annotation.nonnull=org.eclipse.jdt.annotation.NonNull
+org.eclipse.jdt.core.compiler.annotation.nonnull.secondary=
+org.eclipse.jdt.core.compiler.annotation.nonnullbydefault=org.eclipse.jdt.annotation.NonNullByDefault
+org.eclipse.jdt.core.compiler.annotation.nonnullbydefault.secondary=
+org.eclipse.jdt.core.compiler.annotation.nullable=org.eclipse.jdt.annotation.Nullable
+org.eclipse.jdt.core.compiler.annotation.nullable.secondary=
+org.eclipse.jdt.core.compiler.annotation.nullanalysis=disabled
 org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
+org.eclipse.jdt.core.compiler.codegen.methodParameters=do not generate
 org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.8
 org.eclipse.jdt.core.compiler.codegen.unusedLocal=preserve
 org.eclipse.jdt.core.compiler.compliance=1.8
 org.eclipse.jdt.core.compiler.debug.lineNumber=generate
 org.eclipse.jdt.core.compiler.debug.localVariable=generate
 org.eclipse.jdt.core.compiler.debug.sourceFile=generate
+org.eclipse.jdt.core.compiler.problem.annotationSuperInterface=warning
 org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
+org.eclipse.jdt.core.compiler.problem.autoboxing=ignore
+org.eclipse.jdt.core.compiler.problem.comparingIdentical=warning
+org.eclipse.jdt.core.compiler.problem.deadCode=warning
+org.eclipse.jdt.core.compiler.problem.deprecation=warning
+org.eclipse.jdt.core.compiler.problem.deprecationInDeprecatedCode=disabled
+org.eclipse.jdt.core.compiler.problem.deprecationWhenOverridingDeprecatedMethod=disabled
+org.eclipse.jdt.core.compiler.problem.discouragedReference=warning
+org.eclipse.jdt.core.compiler.problem.emptyStatement=ignore
+org.eclipse.jdt.core.compiler.problem.enablePreviewFeatures=disabled
 org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
+org.eclipse.jdt.core.compiler.problem.explicitlyClosedAutoCloseable=ignore
+org.eclipse.jdt.core.compiler.problem.fallthroughCase=ignore
+org.eclipse.jdt.core.compiler.problem.fatalOptionalError=disabled
+org.eclipse.jdt.core.compiler.problem.fieldHiding=ignore
+org.eclipse.jdt.core.compiler.problem.finalParameterBound=warning
+org.eclipse.jdt.core.compiler.problem.finallyBlockNotCompletingNormally=warning
 org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
+org.eclipse.jdt.core.compiler.problem.hiddenCatchBlock=warning
+org.eclipse.jdt.core.compiler.problem.includeNullInfoFromAsserts=disabled
+org.eclipse.jdt.core.compiler.problem.incompatibleNonInheritedInterfaceMethod=warning
+org.eclipse.jdt.core.compiler.problem.incompleteEnumSwitch=warning
+org.eclipse.jdt.core.compiler.problem.indirectStaticAccess=ignore
+org.eclipse.jdt.core.compiler.problem.localVariableHiding=ignore
+org.eclipse.jdt.core.compiler.problem.methodWithConstructorName=warning
+org.eclipse.jdt.core.compiler.problem.missingDefaultCase=ignore
+org.eclipse.jdt.core.compiler.problem.missingDeprecatedAnnotation=ignore
+org.eclipse.jdt.core.compiler.problem.missingEnumCaseDespiteDefault=disabled
+org.eclipse.jdt.core.compiler.problem.missingHashCodeMethod=ignore
+org.eclipse.jdt.core.compiler.problem.missingOverrideAnnotation=ignore
+org.eclipse.jdt.core.compiler.problem.missingOverrideAnnotationForInterfaceMethodImplementation=enabled
+org.eclipse.jdt.core.compiler.problem.missingSerialVersion=warning
+org.eclipse.jdt.core.compiler.problem.missingSynchronizedOnInheritedMethod=ignore
+org.eclipse.jdt.core.compiler.problem.noEffectAssignment=warning
+org.eclipse.jdt.core.compiler.problem.noImplicitStringConversion=warning
+org.eclipse.jdt.core.compiler.problem.nonExternalizedStringLiteral=ignore
+org.eclipse.jdt.core.compiler.problem.nonnullParameterAnnotationDropped=warning
+org.eclipse.jdt.core.compiler.problem.nonnullTypeVariableFromLegacyInvocation=warning
+org.eclipse.jdt.core.compiler.problem.nullAnnotationInferenceConflict=error
+org.eclipse.jdt.core.compiler.problem.nullReference=warning
+org.eclipse.jdt.core.compiler.problem.nullSpecViolation=error
+org.eclipse.jdt.core.compiler.problem.nullUncheckedConversion=warning
+org.eclipse.jdt.core.compiler.problem.overridingPackageDefaultMethod=warning
+org.eclipse.jdt.core.compiler.problem.parameterAssignment=ignore
+org.eclipse.jdt.core.compiler.problem.pessimisticNullAnalysisForFreeTypeVariables=warning
+org.eclipse.jdt.core.compiler.problem.possibleAccidentalBooleanAssignment=ignore
+org.eclipse.jdt.core.compiler.problem.potentialNullReference=ignore
+org.eclipse.jdt.core.compiler.problem.potentiallyUnclosedCloseable=ignore
+org.eclipse.jdt.core.compiler.problem.rawTypeReference=warning
+org.eclipse.jdt.core.compiler.problem.redundantNullAnnotation=warning
+org.eclipse.jdt.core.compiler.problem.redundantNullCheck=ignore
+org.eclipse.jdt.core.compiler.problem.redundantSpecificationOfTypeArguments=ignore
+org.eclipse.jdt.core.compiler.problem.redundantSuperinterface=ignore
+org.eclipse.jdt.core.compiler.problem.reportMethodCanBePotentiallyStatic=ignore
+org.eclipse.jdt.core.compiler.problem.reportMethodCanBeStatic=ignore
+org.eclipse.jdt.core.compiler.problem.reportPreviewFeatures=ignore
+org.eclipse.jdt.core.compiler.problem.specialParameterHidingField=disabled
+org.eclipse.jdt.core.compiler.problem.staticAccessReceiver=warning
+org.eclipse.jdt.core.compiler.problem.suppressOptionalErrors=disabled
+org.eclipse.jdt.core.compiler.problem.suppressWarnings=enabled
+org.eclipse.jdt.core.compiler.problem.syntacticNullAnalysisForFields=disabled
+org.eclipse.jdt.core.compiler.problem.syntheticAccessEmulation=ignore
+org.eclipse.jdt.core.compiler.problem.typeParameterHiding=warning
+org.eclipse.jdt.core.compiler.problem.unavoidableGenericTypeProblems=enabled
+org.eclipse.jdt.core.compiler.problem.uncheckedTypeOperation=warning
+org.eclipse.jdt.core.compiler.problem.unclosedCloseable=warning
+org.eclipse.jdt.core.compiler.problem.undocumentedEmptyBlock=ignore
+org.eclipse.jdt.core.compiler.problem.unhandledWarningToken=warning
+org.eclipse.jdt.core.compiler.problem.unnecessaryElse=ignore
+org.eclipse.jdt.core.compiler.problem.unnecessaryTypeCheck=ignore
+org.eclipse.jdt.core.compiler.problem.unqualifiedFieldAccess=ignore
+org.eclipse.jdt.core.compiler.problem.unusedDeclaredThrownException=ignore
+org.eclipse.jdt.core.compiler.problem.unusedDeclaredThrownExceptionExemptExceptionAndThrowable=enabled
+org.eclipse.jdt.core.compiler.problem.unusedDeclaredThrownExceptionIncludeDocCommentReference=enabled
+org.eclipse.jdt.core.compiler.problem.unusedDeclaredThrownExceptionWhenOverriding=disabled
+org.eclipse.jdt.core.compiler.problem.unusedExceptionParameter=ignore
+org.eclipse.jdt.core.compiler.problem.unusedImport=warning
+org.eclipse.jdt.core.compiler.problem.unusedLabel=warning
+org.eclipse.jdt.core.compiler.problem.unusedLocal=warning
+org.eclipse.jdt.core.compiler.problem.unusedObjectAllocation=ignore
+org.eclipse.jdt.core.compiler.problem.unusedParameter=ignore
+org.eclipse.jdt.core.compiler.problem.unusedParameterIncludeDocCommentReference=enabled
+org.eclipse.jdt.core.compiler.problem.unusedParameterWhenImplementingAbstract=disabled
+org.eclipse.jdt.core.compiler.problem.unusedParameterWhenOverridingConcrete=disabled
+org.eclipse.jdt.core.compiler.problem.unusedPrivateMember=warning
+org.eclipse.jdt.core.compiler.problem.unusedTypeParameter=ignore
+org.eclipse.jdt.core.compiler.problem.unusedWarningToken=warning
+org.eclipse.jdt.core.compiler.problem.varargsArgumentNeedCast=warning
+org.eclipse.jdt.core.compiler.release=disabled
 org.eclipse.jdt.core.compiler.source=1.8

.settings/org.eclipse.wst.common.component

@@ -0,0 +1,6 @@
+<?xml version="1.0" encoding="UTF-8"?><project-modules id="moduleCoreId" project-version="1.5.0">
+    <wb-module deploy-name="dataminer">
+        <wb-resource deploy-path="/" source-path="/src/main/java"/>
+        <wb-resource deploy-path="/" source-path="/src/main/resources"/>
+    </wb-module>
+</project-modules>

.settings/org.eclipse.wst.common.project.facet.core.xml

@@ -0,0 +1,5 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<faceted-project>
+  <installed facet="java" version="1.8"/>
+  <installed facet="jst.utility" version="1.0"/>
+</faceted-project>

.settings/org.eclipse.wst.validation.prefs

@@ -0,0 +1,2 @@
+disabled=06target
+eclipse.preferences.version=1

CHANGELOG.md

@@ -0,0 +1,72 @@
+# Changelog for "dataminer"
+
+## [v1.9.0] - 2022-04-05
+
+-  Added support to  new JWT token via URI Resolver [#23107]
+
+
+## [v1.8.1] - 2022-03-21
+
+- Update wps service to support not writing of the computation status to the user's workspace [#23054]
+- Fixed protocol parameter when persistence is disabled
+
+
+## [v1.8.0] - 2022-01-24
+
+- Fixed max computations support [#22700]
+
+
+## [v1.7.1] - 2021-05-24
+
+- Fixed obsolete short urls [#20971]
+
+
+## [v1.7.0] - 2020-11-20
+
+- import range modified to resolve old repositories invalid url
+
+
+## [v1.6.0] - 2020-05-12
+
+- Added storagehub retry in InputsManager class, getLocalFile method [#19253]
+
+
+## [v1.5.9] - 2019-11-20
+
+- Fixed Content-Type support for files in the results of computations [#18096]
+
+
+## [v1.5.8] - 2019-10-01
+
+- Fixed https link for output parameter [#17659]
+
+
+## [v1.5.7] - 2019-03-01
+
+- Updated https support [#13024]
+
+
+
+## [v1.5.2] - 2017-12-13
+
+- added the right extension on output file
+- lock file created on execution
+
+
+## [v1.5.1] - 2017-09-14
+
+- added accounting on algorithm execution
+
+
+## [v1.5.0] - 2017-07-31
+
+- service interface classes moved to wps project
+
+
+## [v1.1.0] - 2016-10-03
+
+- First Release
+
+
+This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
+

FUNDING.md

@@ -0,0 +1,26 @@
+# Acknowledgments
+
+The projects leading to this software have received funding from a series of European Union programmes including:
+
+- the Sixth Framework Programme for Research and Technological Development
+    - [DILIGENT](https://cordis.europa.eu/project/id/004260) (grant no. 004260).
+- the Seventh Framework Programme for research, technological development and demonstration 
+    - [D4Science](https://cordis.europa.eu/project/id/212488) (grant no. 212488);
+    - [D4Science-II](https://cordis.europa.eu/project/id/239019) (grant no.239019);
+    - [ENVRI](https://cordis.europa.eu/project/id/283465) (grant no. 283465);
+    - [iMarine](https://cordis.europa.eu/project/id/283644) (grant no. 283644);
+    - [EUBrazilOpenBio](https://cordis.europa.eu/project/id/288754) (grant no. 288754).
+- the H2020 research and innovation programme 
+    - [SoBigData](https://cordis.europa.eu/project/id/654024) (grant no. 654024);
+    - [PARTHENOS](https://cordis.europa.eu/project/id/654119) (grant no. 654119);
+    - [EGI-Engage](https://cordis.europa.eu/project/id/654142) (grant no. 654142);
+    - [ENVRI PLUS](https://cordis.europa.eu/project/id/654182) (grant no. 654182);
+    - [BlueBRIDGE](https://cordis.europa.eu/project/id/675680) (grant no. 675680);
+    - [PerformFISH](https://cordis.europa.eu/project/id/727610) (grant no. 727610);
+    - [AGINFRA PLUS](https://cordis.europa.eu/project/id/731001) (grant no. 731001);
+    - [DESIRA](https://cordis.europa.eu/project/id/818194) (grant no. 818194);
+    - [ARIADNEplus](https://cordis.europa.eu/project/id/823914) (grant no. 823914);
+    - [RISIS 2](https://cordis.europa.eu/project/id/824091) (grant no. 824091);
+    - [EOSC-Pillar](https://cordis.europa.eu/project/id/857650) (grant no. 857650);
+    - [Blue Cloud](https://cordis.europa.eu/project/id/862409) (grant no. 862409);
+    - [SoBigData-PlusPlus](https://cordis.europa.eu/project/id/871042) (grant no. 871042);

LICENSE.md

@@ -0,0 +1,311 @@
+#European Union Public Licence V.1.1
+
+##*EUPL © the European Community 2007*
+
+
+This **European Union Public Licence** (the **“EUPL”**) applies to the Work or Software
+(as defined below) which is provided under the terms of this Licence. Any use of
+the Work, other than as authorised under this Licence is prohibited (to the
+extent such use is covered by a right of the copyright holder of the Work).
+
+The Original Work is provided under the terms of this Licence when the Licensor
+(as defined below) has placed the following notice immediately following the
+copyright notice for the Original Work:
+
+**Licensed under the EUPL V.1.1**
+
+or has expressed by any other mean his willingness to license under the EUPL.
+
+
+
+##1. Definitions
+
+In this Licence, the following terms have the following meaning:
+
+- The Licence: this Licence.
+
+- The Original Work or the Software: the software distributed and/or
+  communicated by the Licensor under this Licence, available as Source Code and
+  also as Executable Code as the case may be.
+
+- Derivative Works: the works or software that could be created by the Licensee,
+  based upon the Original Work or modifications thereof. This Licence does not
+  define the extent of modification or dependence on the Original Work required
+  in order to classify a work as a Derivative Work; this extent is determined by
+  copyright law applicable in the country mentioned in Article 15.
+
+- The Work: the Original Work and/or its Derivative Works.
+
+- The Source Code: the human-readable form of the Work which is the most
+  convenient for people to study and modify.
+
+- The Executable Code: any code which has generally been compiled and which is
+  meant to be interpreted by a computer as a program.
+
+- The Licensor: the natural or legal person that distributes and/or communicates
+  the Work under the Licence.
+
+- Contributor(s): any natural or legal person who modifies the Work under the
+  Licence, or otherwise contributes to the creation of a Derivative Work.
+
+- The Licensee or “You”: any natural or legal person who makes any usage of the
+  Software under the terms of the Licence.
+
+- Distribution and/or Communication: any act of selling, giving, lending,
+  renting, distributing, communicating, transmitting, or otherwise making
+  available, on-line or off-line, copies of the Work or providing access to its
+  essential functionalities at the disposal of any other natural or legal
+  person.
+
+
+
+##2. Scope of the rights granted by the Licence
+
+The Licensor hereby grants You a world-wide, royalty-free, non-exclusive,
+sub-licensable licence to do the following, for the duration of copyright vested
+in the Original Work:
+
+- use the Work in any circumstance and for all usage, reproduce the Work, modify
+- the Original Work, and make Derivative Works based upon the Work, communicate
+- to the public, including the right to make available or display the Work or
+- copies thereof to the public and perform publicly, as the case may be, the
+- Work, distribute the Work or copies thereof, lend and rent the Work or copies
+- thereof, sub-license rights in the Work or copies thereof.
+
+Those rights can be exercised on any media, supports and formats, whether now
+known or later invented, as far as the applicable law permits so.
+
+In the countries where moral rights apply, the Licensor waives his right to
+exercise his moral right to the extent allowed by law in order to make effective
+the licence of the economic rights here above listed.
+
+The Licensor grants to the Licensee royalty-free, non exclusive usage rights to
+any patents held by the Licensor, to the extent necessary to make use of the
+rights granted on the Work under this Licence.
+
+
+
+##3. Communication of the Source Code
+
+The Licensor may provide the Work either in its Source Code form, or as
+Executable Code. If the Work is provided as Executable Code, the Licensor
+provides in addition a machine-readable copy of the Source Code of the Work
+along with each copy of the Work that the Licensor distributes or indicates, in
+a notice following the copyright notice attached to the Work, a repository where
+the Source Code is easily and freely accessible for as long as the Licensor
+continues to distribute and/or communicate the Work.
+
+
+
+##4. Limitations on copyright
+
+Nothing in this Licence is intended to deprive the Licensee of the benefits from
+any exception or limitation to the exclusive rights of the rights owners in the
+Original Work or Software, of the exhaustion of those rights or of other
+applicable limitations thereto.
+
+
+
+##5. Obligations of the Licensee
+
+The grant of the rights mentioned above is subject to some restrictions and
+obligations imposed on the Licensee. Those obligations are the following:
+
+Attribution right: the Licensee shall keep intact all copyright, patent or
+trademarks notices and all notices that refer to the Licence and to the
+disclaimer of warranties. The Licensee must include a copy of such notices and a
+copy of the Licence with every copy of the Work he/she distributes and/or
+communicates. The Licensee must cause any Derivative Work to carry prominent
+notices stating that the Work has been modified and the date of modification.
+
+Copyleft clause: If the Licensee distributes and/or communicates copies of the
+Original Works or Derivative Works based upon the Original Work, this
+Distribution and/or Communication will be done under the terms of this Licence
+or of a later version of this Licence unless the Original Work is expressly
+distributed only under this version of the Licence. The Licensee (becoming
+Licensor) cannot offer or impose any additional terms or conditions on the Work
+or Derivative Work that alter or restrict the terms of the Licence.
+
+Compatibility clause: If the Licensee Distributes and/or Communicates Derivative
+Works or copies thereof based upon both the Original Work and another work
+licensed under a Compatible Licence, this Distribution and/or Communication can
+be done under the terms of this Compatible Licence. For the sake of this clause,
+“Compatible Licence” refers to the licences listed in the appendix attached to
+this Licence. Should the Licensee’s obligations under the Compatible Licence
+conflict with his/her obligations under this Licence, the obligations of the
+Compatible Licence shall prevail.
+
+Provision of Source Code: When distributing and/or communicating copies of the
+Work, the Licensee will provide a machine-readable copy of the Source Code or
+indicate a repository where this Source will be easily and freely available for
+as long as the Licensee continues to distribute and/or communicate the Work.
+
+Legal Protection: This Licence does not grant permission to use the trade names,
+trademarks, service marks, or names of the Licensor, except as required for
+reasonable and customary use in describing the origin of the Work and
+reproducing the content of the copyright notice.
+
+
+
+##6. Chain of Authorship
+
+The original Licensor warrants that the copyright in the Original Work granted
+hereunder is owned by him/her or licensed to him/her and that he/she has the
+power and authority to grant the Licence.
+
+Each Contributor warrants that the copyright in the modifications he/she brings
+to the Work are owned by him/her or licensed to him/her and that he/she has the
+power and authority to grant the Licence.
+
+Each time You accept the Licence, the original Licensor and subsequent
+Contributors grant You a licence to their contributions to the Work, under the
+terms of this Licence.
+
+
+
+##7. Disclaimer of Warranty
+
+The Work is a work in progress, which is continuously improved by numerous
+contributors. It is not a finished work and may therefore contain defects or
+“bugs” inherent to this type of software development.
+
+For the above reason, the Work is provided under the Licence on an “as is” basis
+and without warranties of any kind concerning the Work, including without
+limitation merchantability, fitness for a particular purpose, absence of defects
+or errors, accuracy, non-infringement of intellectual property rights other than
+copyright as stated in Article 6 of this Licence.
+
+This disclaimer of warranty is an essential part of the Licence and a condition
+for the grant of any rights to the Work.
+
+
+
+##8. Disclaimer of Liability
+
+Except in the cases of wilful misconduct or damages directly caused to natural
+persons, the Licensor will in no event be liable for any direct or indirect,
+material or moral, damages of any kind, arising out of the Licence or of the use
+of the Work, including without limitation, damages for loss of goodwill, work
+stoppage, computer failure or malfunction, loss of data or any commercial
+damage, even if the Licensor has been advised of the possibility of such
+damage. However, the Licensor will be liable under statutory product liability
+laws as far such laws apply to the Work.
+
+
+
+##9. Additional agreements
+
+While distributing the Original Work or Derivative Works, You may choose to
+conclude an additional agreement to offer, and charge a fee for, acceptance of
+support, warranty, indemnity, or other liability obligations and/or services
+consistent with this Licence. However, in accepting such obligations, You may
+act only on your own behalf and on your sole responsibility, not on behalf of
+the original Licensor or any other Contributor, and only if You agree to
+indemnify, defend, and hold each Contributor harmless for any liability incurred
+by, or claims asserted against such Contributor by the fact You have accepted
+any such warranty or additional liability.
+
+
+
+##10. Acceptance of the Licence
+
+The provisions of this Licence can be accepted by clicking on an icon “I agree”
+placed under the bottom of a window displaying the text of this Licence or by
+affirming consent in any other similar way, in accordance with the rules of
+applicable law. Clicking on that icon indicates your clear and irrevocable
+acceptance of this Licence and all of its terms and conditions.
+
+Similarly, you irrevocably accept this Licence and all of its terms and
+conditions by exercising any rights granted to You by Article 2 of this Licence,
+such as the use of the Work, the creation by You of a Derivative Work or the
+Distribution and/or Communication by You of the Work or copies thereof.
+
+
+
+##11. Information to the public
+
+In case of any Distribution and/or Communication of the Work by means of
+electronic communication by You (for example, by offering to download the Work
+from a remote location) the distribution channel or media (for example, a
+website) must at least provide to the public the information requested by the
+applicable law regarding the Licensor, the Licence and the way it may be
+accessible, concluded, stored and reproduced by the Licensee.
+
+
+
+##12. Termination of the Licence
+
+The Licence and the rights granted hereunder will terminate automatically upon
+any breach by the Licensee of the terms of the Licence.
+
+Such a termination will not terminate the licences of any person who has
+received the Work from the Licensee under the Licence, provided such persons
+remain in full compliance with the Licence.
+
+
+
+##13. Miscellaneous
+
+Without prejudice of Article 9 above, the Licence represents the complete
+agreement between the Parties as to the Work licensed hereunder.
+
+If any provision of the Licence is invalid or unenforceable under applicable
+law, this will not affect the validity or enforceability of the Licence as a
+whole. Such provision will be construed and/or reformed so as necessary to make
+it valid and enforceable.
+
+The European Commission may publish other linguistic versions and/or new
+versions of this Licence, so far this is required and reasonable, without
+reducing the scope of the rights granted by the Licence. New versions of the
+Licence will be published with a unique version number.
+
+All linguistic versions of this Licence, approved by the European Commission,
+have identical value. Parties can take advantage of the linguistic version of
+their choice.
+
+
+
+##14. Jurisdiction
+
+Any litigation resulting from the interpretation of this License, arising
+between the European Commission, as a Licensor, and any Licensee, will be
+subject to the jurisdiction of the Court of Justice of the European Communities,
+as laid down in article 238 of the Treaty establishing the European Community.
+
+Any litigation arising between Parties, other than the European Commission, and
+resulting from the interpretation of this License, will be subject to the
+exclusive jurisdiction of the competent court where the Licensor resides or
+conducts its primary business.
+
+
+
+##15. Applicable Law
+
+This Licence shall be governed by the law of the European Union country where
+the Licensor resides or has his registered office.
+
+This licence shall be governed by the Belgian law if:
+
+- a litigation arises between the European Commission, as a Licensor, and any
+- Licensee; the Licensor, other than the European Commission, has no residence
+- or registered office inside a European Union country.
+
+
+---
+
+
+##Appendix
+
+
+**“Compatible Licences”** according to article 5 EUPL are:
+
+
+- GNU General Public License (GNU GPL) v. 2
+
+- Open Software License (OSL) v. 2.1, v. 3.0
+
+- Common Public License v. 1.0
+
+- Eclipse Public License v. 1.0
+
+- Cecill v. 2.0

README.md

@@ -0,0 +1,40 @@
+# DataMiner 
+
+DataMiner is a library for integrate WPS 52North in the D4Science Infrastructure.
+
+## Structure of the project
+
+* The source code is present in the src folder. 
+
+## Built With
+
+* [OpenJDK](https://openjdk.java.net/) - The JDK used
+* [Maven](https://maven.apache.org/) - Dependency Management
+
+## Documentation
+
+* Use of this library is described on [Wiki](https://wiki.gcube-system.org/gcube/DataMiner_Installation).
+
+## Change log
+
+See [Releases](https://code-repo.d4science.org/gCubeSystem/dataminer/releases).
+
+## Authors
+
+* **Gianpaolo Coro** ([ORCID]()) - [ISTI-CNR Infrascience Group](http://nemis.isti.cnr.it/groups/infrascience)
+* **Lucio Lelii** ([ORCID]()) - [ISTI-CNR Infrascience Group](http://nemis.isti.cnr.it/groups/infrascience)
+* **Giancarlo Panichi** ([ORCID](http://orcid.org/0000-0001-8375-6644)) - [ISTI-CNR Infrascience Group](http://nemis.isti.cnr.it/groups/infrascience)
+
+
+## License
+
+This project is licensed under the EUPL V.1.1 License - see the [LICENSE.md](LICENSE.md) file for details.
+
+
+## About the gCube Framework
+This software is part of the [gCubeFramework](https://www.gcube-system.org/ "gCubeFramework"): an
+open-source software toolkit used for building and operating Hybrid Data
+Infrastructures enabling the dynamic deployment of Virtual Research Environments
+by favouring the realisation of reuse oriented policies.
+ 
+The projects leading to this software have received funding from a series of European Union programmes see [FUNDING.md](FUNDING.md)

descriptor.xml

@@ -9,13 +9,13 @@
 	<baseDirectory>/</baseDirectory>
 	<fileSets>
 		<fileSet>
-			<directory>${distroDirectory}</directory>
 			<outputDirectory>/</outputDirectory>
 			<useDefaultExcludes>true</useDefaultExcludes>
 			<includes>
-				<include>README</include>
-				<include>LICENSE</include>
-				<include>changelog.xml</include>
+				<include>README.md</include>
+				<include>LICENSE.md</include>
+				<include>CHANGELOG.md</include>
+				<include>FUNDING.md</include>
 				<include>profile.xml</include>
 			</includes>
 			<fileMode>755</fileMode>

distro/LICENSE

@@ -1 +0,0 @@
-${gcube.license}

distro/README

@@ -1,69 +0,0 @@
-The gCube System - ${name}
---------------------------------------------------
- 
-${description}
- 
-
-${gcube.description}
- 
-${gcube.funding}
- 
- 
-Version
---------------------------------------------------
- 
-${version} (${buildDate})
- 
-Please see the file named "changelog.xml" in this directory for the release notes.
- 
- 
-Authors
---------------------------------------------------
-
-* Gianpaolo Coro (gianpaolo.coro-AT-isti.cnr.it), 
-		Istituto di Scienza e Tecnologie dell'Informazione "A. Faedo" CNR, Pisa IT
-
- 
-Maintainers
------------
- 
-* Gianpaolo Coro (gianpaolo.coro-AT-isti.cnr.it), 
-		Istituto di Scienza e Tecnologie dell'Informazione "A. Faedo" CNR, Pisa IT
-
- 
-Download information
---------------------------------------------------
- 
-Source code is available from SVN: 
-	${scm.url}
- 
-Binaries can be downloaded from the gCube website: 
-	${gcube.website}
- 
- 
-Installation
---------------------------------------------------
- 
-Installation documentation is available on-line in the gCube Wiki:
-	https://wiki.gcube-system.org/gcube/DataMiner_Installation
-  
- 
-Documentation 
---------------------------------------------------
- 
-Documentation is available on-line in the gCube Wiki:
-	https://wiki.gcube-system.org/gcube/DataMiner_Installation
-   
- 
-Support 
---------------------------------------------------
- 
-Bugs and support requests can be reported in the gCube issue tracking tool:
-	${gcube.issueTracking}
- 
- 
-Licensing
---------------------------------------------------
- 
-This software is licensed under the terms you may find in the file named "LICENSE" in this directory.
-

distro/changelog.xml

@@ -1,15 +0,0 @@
-<ReleaseNotes>
-    <Changeset component="${groupId}.${artifactId}.1-5-2" date="2017-12-13">
-		<Change>added the right extension on output file</Change>
-		<Change>lock file created on execution</Change>
-	</Changeset>
-	<Changeset component="${groupId}.${artifactId}.1-5-1" date="2017-09-14">
-		<Change>added accounting on algorithm execution</Change>
-	</Changeset>
-	<Changeset component="${groupId}.${artifactId}.1-5-0" date="2017-07-31">
-		<Change>service interface classes moved to wps project</Change>
-	</Changeset>
-	<Changeset component="${groupId}.${artifactId}.1-1-0" date="2016-10-03">
-		<Change>First Release</Change>
-	</Changeset>
-</ReleaseNotes>

pom.xml

@@ -1,210 +1,213 @@
-<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
-	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
-	<modelVersion>4.0.0</modelVersion>
-	<parent>
-		<artifactId>maven-parent</artifactId>
-		<groupId>org.gcube.tools</groupId>
-		<version>1.0.0</version>
-		<relativePath />
-	</parent>
-	<groupId>org.gcube.dataanalysis</groupId>
-	<artifactId>dataminer</artifactId>
-	<version>1.5.3-SNAPSHOT</version>
-	<name>dataminer</name>
-	<description>An e-Infrastructure service providing state-of-the art DataMining algorithms and ecological modelling approaches under the Web Processing Service (WPS) standard.</description>
-	<scm>
-		<url>https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-analysis/DataMiner</url>
-	</scm>
-
-	<developers>
-		<developer>
-			<name>Gianpaolo Coro</name>
-			<email>gianpaolo.coro@isti.cnr.it</email>
-			<organization>CNR Pisa, Istituto di Scienza e Tecnologie dell'Informazione "A. Faedo"</organization>
-			<roles>
-				<role>architect</role>
-				<role>developer</role>
-			</roles>
-		</developer>
-	</developers>
-	<properties>
-		<webappDirectory>${project.build.directory}/${project.build.finalName}</webappDirectory>
-		<distroDirectory>distro</distroDirectory>
-		<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
-		<project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
-	</properties>
-	<dependencies>
-		<!-- https://mvnrepository.com/artifact/org.reflections/reflections-maven -->
-		<dependency>
-			<groupId>org.reflections</groupId>
-			<artifactId>reflections</artifactId>
-			<version>0.9.10</version>
-		</dependency>
-
-
-		<dependency>
-			<groupId>javax.servlet</groupId>
-			<artifactId>servlet-api</artifactId>
-			<version>2.5</version>
-		</dependency>
-
-		<dependency>
-			<groupId>org.n52.wps</groupId>
-			<artifactId>52n-wps-io</artifactId>
-			<version>3.6.1</version>
-		</dependency>
-		<dependency>
-			<groupId>org.n52.wps</groupId>
-			<artifactId>52n-wps-io-impl</artifactId>
-			<version>3.6.1</version>
-		</dependency>
-		<dependency>
-			<groupId>org.gcube.dataanalysis</groupId>
-			<artifactId>52n-wps-algorithm-gcube</artifactId>
-			<version>[3.6.1-SNAPSHOT,3.7.0-SNAPSHOT)</version>
-		</dependency>
-		<dependency>
-			<groupId>org.gcube.dataanalysis</groupId>
-			<artifactId>52n-wps-server-gcube</artifactId>
-			<version>[3.6.1-SNAPSHOT, 3.7.0-SNAPSHOT)</version>
-		</dependency>
-		<dependency> 
-			<groupId>org.gcube.dataanalysis</groupId> 
-			<artifactId>ecological-engine</artifactId> 
-			<version>[1.8.5-SNAPSHOT,2.0.0-SNAPSHOT)</version> 
-		</dependency> 
-		<dependency>
-			<groupId>org.gcube.dataanalysis</groupId>
-			<artifactId>ecological-engine-wps-extension</artifactId>
-			<version>[1.0.2-SNAPSHOT,2.0.0-SNAPSHOT)</version>
-		</dependency>
-		<dependency>
-			<groupId>org.gcube.dataanalysis</groupId>
-			<artifactId>ecological-engine-geospatial-extensions</artifactId>
-			<version>[1.3.2-SNAPSHOT,2.0.0-SNAPSHOT)</version>
-			<exclusions>
-				<exclusion>
-					<artifactId>log4j</artifactId>
-					<groupId>log4j</groupId>
-				</exclusion>
-			</exclusions>
-		</dependency>
-		<dependency>
-			<groupId>org.gcube.dataanalysis</groupId>
-			<artifactId>ecological-engine-external-algorithms</artifactId>
-			<version>[1.1.5-SNAPSHOT,2.0.0-SNAPSHOT)</version>
-		</dependency>
-		<dependency>
-			<groupId>org.gcube.dataanalysis</groupId>
-			<artifactId>ecological-engine-smart-executor</artifactId>
-			<version>[1.0.0-SNAPSHOT,2.0.0-SNAPSHOT)</version>
-		</dependency>
-		<dependency>
-			<groupId>org.slf4j</groupId>
-			<artifactId>slf4j-nop</artifactId>
-			<version>1.7.10</version>
-			<exclusions>
-				<exclusion>
-					<artifactId>slf4j-api</artifactId>
-					<groupId>org.slf4j</groupId>
-				</exclusion>
-			</exclusions>
-		</dependency>
-		<dependency>
-			<groupId>junit</groupId>
-			<artifactId>junit</artifactId>
-			<version>4.11</version>
-			<scope>test</scope>
-		</dependency>
-		<!-- <dependency> <groupId>org.gcube.common</groupId> <artifactId>common-authorization</artifactId> 
-			</dependency> <dependency> <groupId>org.gcube.core</groupId> <artifactId>common-scope</artifactId> 
-			</dependency> -->
-		<dependency>
-			<groupId>javassist</groupId>
-			<artifactId>javassist</artifactId>
-			<version>3.12.1.GA</version>
-		</dependency>
-		<dependency>
-			<groupId>org.gcube.common</groupId>
-			<artifactId>home-library-jcr</artifactId>
-			<version>[2.0.0-SNAPSHOT,3.0.0-SNAPSHOT)</version>
-		</dependency>
-
-		<dependency>
-			<groupId>org.gcube.common</groupId>
-			<artifactId>home-library</artifactId>
-			<version>[2.0.0-SNAPSHOT,3.0.0-SNAPSHOT)</version>
-		</dependency>
-
-		<dependency>
-			<groupId>xerces</groupId>
-			<artifactId>xercesImpl</artifactId>
-			<version>2.11.0</version>
-		</dependency>
-		
-		<dependency>
-			<groupId>org.gcube.accounting</groupId>
-			<artifactId>accounting-lib</artifactId>
-			<version>[3.0.0-SNAPSHOT,4.0.0-SNAPSHOT)</version>
-			<scope>provided</scope>	
-		</dependency>
-
-
-	</dependencies>
-	<build>
-		<plugins>
-
-
-			<plugin>
-				<artifactId>maven-compiler-plugin</artifactId>
-				<version>3.1</version>
-				<configuration>
-					<source>1.8</source>
-					<target>1.8</target>
-				</configuration>
-			</plugin>
-			<plugin>
-				<groupId>org.apache.maven.plugins</groupId>
-				<artifactId>maven-surefire-plugin</artifactId>
-				<version>2.18.1</version>
-				<configuration>
-					<skipTests>true</skipTests>
-				</configuration>
-			</plugin>
-
-
-
-			<plugin>
-				<groupId>org.apache.maven.plugins</groupId>
-				<artifactId>maven-assembly-plugin</artifactId>
-				<configuration>
-					<descriptors>
-						<descriptor>${distroDirectory}/descriptor.xml</descriptor>
-					</descriptors>
-				</configuration>
-				<executions>
-					<execution>
-						<id>servicearchive</id>
-						<phase>install</phase>
-						<goals>
-							<goal>single</goal>
-						</goals>
-					</execution>
-				</executions>
-			</plugin>
-		</plugins>
-	</build>
-	<repositories>
-		<repository>
-			<id>n52-releases</id>
-			<name>52n Releases</name>
-			<url>http://52north.org/maven/repo/releases</url>
-			<releases>
-				<enabled>true</enabled>
-			</releases>
-			<snapshots>
-				<enabled>false</enabled>
-			</snapshots>
-		</repository>
-	</repositories>
+<project xmlns="http://maven.apache.org/POM/4.0.0"
+	xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+	xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
+	<modelVersion>4.0.0</modelVersion>
+	<parent>
+		<artifactId>maven-parent</artifactId>
+		<groupId>org.gcube.tools</groupId>
+		<version>1.1.0</version>
+		<relativePath />
+	</parent>
+	<groupId>org.gcube.dataanalysis</groupId>
+	<artifactId>dataminer</artifactId>
+	<version>1.9.0</version>
+	<name>dataminer</name>
+	<description>An e-Infrastructure service providing state-of-the art DataMining algorithms and ecological modelling approaches under the Web Processing Service (WPS) standard.</description>
+
+	<scm>
+		<connection>scm:git:https://code-repo.d4science.org/gCubeSystem/${project.artifactId}.git</connection>
+		<developerConnection>scm:git:https://code-repo.d4science.org/gCubeSystem/${project.artifactId}.git</developerConnection>
+		<url>https://code-repo.d4science.org/gCubeSystem/${project.artifactId}</url>
+	</scm>
+
+	<developers>
+		<developer>
+			<name>Gianpaolo Coro</name>
+			<email>gianpaolo.coro@isti.cnr.it</email>
+			<organization>CNR Pisa, Istituto di Scienza e Tecnologie dell'Informazione "A. Faedo"</organization>
+			<roles>
+				<role>architect</role>
+				<role>developer</role>
+			</roles>
+		</developer>
+		<developer>
+			<name>Lucio Lelii</name>
+			<email>lucio.lelii@isti.cnr.it</email>
+			<organization>CNR Pisa, Istituto di Scienza e Tecnologie dell'Informazione "A. Faedo"</organization>
+			<roles>
+				<role>architect</role>
+				<role>developer</role>
+			</roles>
+		</developer>
+	</developers>
+
+	<properties>
+		<webappDirectory>${project.build.directory}/${project.build.finalName}</webappDirectory>
+		<distroDirectory>distro</distroDirectory>
+		<project.build.sourceEncoding>UTF-8</project.build.sourceEncoding>
+		<project.reporting.outputEncoding>UTF-8</project.reporting.outputEncoding>
+	</properties>
+
+	<dependencyManagement>
+		<!-- Old solution <dependencies> <dependency> <groupId>org.gcube.distribution</groupId> 
+			<artifactId>maven-smartgears-bom</artifactId> <version>2.1.0</version> <type>pom</type> 
+			<scope>import</scope> </dependency> </dependencies> -->
+		<dependencies>
+			<dependency>
+				<groupId>org.gcube.distribution</groupId>
+				<artifactId>gcube-bom</artifactId>
+				<version>2.0.2</version>
+				<type>pom</type>
+				<scope>import</scope>
+			</dependency>
+		</dependencies>
+	</dependencyManagement>
+
+
+	<dependencies>
+		<!-- https://mvnrepository.com/artifact/org.reflections/reflections-maven -->
+		<dependency>
+			<groupId>org.reflections</groupId>
+			<artifactId>reflections</artifactId>
+			<version>0.9.10</version>
+		</dependency>
+
+
+		<dependency>
+			<groupId>javax.servlet</groupId>
+			<artifactId>servlet-api</artifactId>
+			<version>2.5</version>
+		</dependency>
+
+		<dependency>
+			<groupId>org.n52.wps</groupId>
+			<artifactId>52n-wps-io</artifactId>
+			<version>3.6.1</version>
+		</dependency>
+		<dependency>
+			<groupId>org.n52.wps</groupId>
+			<artifactId>52n-wps-io-impl</artifactId>
+			<version>3.6.1</version>
+		</dependency>
+		<dependency>
+			<groupId>org.gcube.dataanalysis</groupId>
+			<artifactId>52n-wps-algorithm-gcube</artifactId>
+			<version>[3.6.1,3.7.0)</version>
+		</dependency>
+		<dependency>
+			<groupId>org.gcube.dataanalysis</groupId>
+			<artifactId>52n-wps-server-gcube</artifactId>
+			<version>[3.6.1, 3.7.0)</version>
+		</dependency>
+		<dependency>
+			<groupId>org.gcube.dataanalysis</groupId>
+			<artifactId>ecological-engine-wps-extension</artifactId>
+			<version>[1.0.5,2.0.0-SNAPSHOT)</version>
+		</dependency>
+		<dependency>
+			<groupId>org.gcube.dataanalysis</groupId>
+			<artifactId>ecological-engine-geospatial-extensions</artifactId>
+			<version>[1.5.2-SNAPSHOT,2.0.0-SNAPSHOT)</version>
+			<exclusions>
+				<exclusion>
+					<artifactId>log4j</artifactId>
+					<groupId>log4j</groupId>
+				</exclusion>
+			</exclusions>
+		</dependency>
+		<dependency>
+			<groupId>org.gcube.dataanalysis</groupId>
+			<artifactId>ecological-engine-external-algorithms</artifactId>
+			<version>[1.2.2-SNAPSHOT,2.0.0-SNAPSHOT)</version>
+		</dependency>
+		<dependency>
+			<groupId>org.gcube.dataanalysis</groupId>
+			<artifactId>ecological-engine-smart-executor</artifactId>
+			<version>[1.6.5-SNAPSHOT,2.0.0-SNAPSHOT)</version>
+			<exclusions>
+				<exclusion>
+					<groupId>org.glassfish.jersey.core</groupId>
+					<artifactId>jersey-client</artifactId>
+				</exclusion>
+				<exclusion>
+					<groupId>org.glassfish.jersey.media</groupId>
+					<artifactId>jersey-media-json-jackson</artifactId>
+				</exclusion>
+			</exclusions>
+		</dependency>
+		<dependency>
+			<groupId>org.slf4j</groupId>
+			<artifactId>slf4j-nop</artifactId>
+			<version>1.7.10</version>
+			<exclusions>
+				<exclusion>
+					<artifactId>slf4j-api</artifactId>
+					<groupId>org.slf4j</groupId>
+				</exclusion>
+			</exclusions>
+		</dependency>
+
+		<dependency>
+			<groupId>junit</groupId>
+			<artifactId>junit</artifactId>
+			<version>4.11</version>
+			<scope>test</scope>
+		</dependency>
+
+		<dependency>
+			<groupId>javassist</groupId>
+			<artifactId>javassist</artifactId>
+			<version>3.12.1.GA</version>
+		</dependency>
+
+
+		<dependency>
+			<groupId>org.gcube.common</groupId>
+			<artifactId>storagehub-client-library</artifactId>
+		</dependency>
+		<dependency>
+			<groupId>org.gcube.common</groupId>
+			<artifactId>storagehub-model</artifactId>
+		</dependency>
+
+		<dependency>
+			<groupId>xerces</groupId>
+			<artifactId>xercesImpl</artifactId>
+			<version>2.11.0</version>
+		</dependency>
+
+		<dependency>
+			<groupId>org.gcube.accounting</groupId>
+			<artifactId>accounting-lib</artifactId>
+			<scope>provided</scope>
+		</dependency>
+
+
+	</dependencies>
+	<build>
+		<plugins>
+
+			<plugin>
+				<groupId>org.apache.maven.plugins</groupId>
+				<artifactId>maven-surefire-plugin</artifactId>
+				<configuration>
+					<skipTests>true</skipTests>
+				</configuration>
+			</plugin>
+
+		</plugins>
+	</build>
+	<repositories>
+		<repository>
+			<id>n52-releases</id>
+			<name>52n Releases</name>
+			<url>http://52north.org/maven/repo/releases</url>
+			<releases>
+				<enabled>true</enabled>
+			</releases>
+			<snapshots>
+				<enabled>false</enabled>
+			</snapshots>
+		</repository>
+	</repositories>
 </project>

src/main/java/org/gcube/dataanalysis/wps/statisticalmanager/synchserver/infrastructure/InfrastructureDialoguer.java

@@ -30,7 +30,7 @@ public class InfrastructureDialoguer {
 	public DatabaseInfo getDatabaseInfo(String resourceName) throws Exception{
 		DatabaseInfo dbi = new DatabaseInfo();
 
-		LOGGER.debug("Searching for Database "+resourceName+" in scope "+scope);
+		LOGGER.debug("Searching for Database {} in scope {}", resourceName, scope);
 		SimpleQuery query = queryFor(ServiceEndpoint.class);
 		//		 query.addCondition("$resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq 'StatisticalManagerDataBase' ");
 		//		query.addCondition("$resource/Profile/Category/text() eq 'Database' and $resource/Profile/Name eq '"+resourceName+"' ");
@@ -51,7 +51,7 @@ public class InfrastructureDialoguer {
 					dbi.driver = property.value(); 
 			}
 
-			LOGGER.debug("Found Database : "+dbi);
+			LOGGER.debug("Found Database : {}",dbi);
 		}
 
 		if (dbi.url == null)

src/main/java/org/gcube/dataanalysis/wps/statisticalmanager/synchserver/is/InformationSystemUtils.java

@@ -0,0 +1,67 @@
+package org.gcube.dataanalysis.wps.statisticalmanager.synchserver.is;
+
+import java.util.List;
+
+import org.gcube.common.resources.gcore.ServiceEndpoint;
+import org.gcube.common.resources.gcore.ServiceEndpoint.Runtime;
+import org.gcube.common.scope.api.ScopeProvider;
+import org.gcube.resources.discovery.client.api.DiscoveryClient;
+import org.gcube.resources.discovery.client.queries.api.SimpleQuery;
+import org.gcube.resources.discovery.icclient.ICFactory;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+public class InformationSystemUtils {
+
+	private static final Logger LOGGER = LoggerFactory.getLogger(InformationSystemUtils.class);
+	private static final String URI_RESOLVER_SERVICE_CATEGORY = "Service";
+	private static final String URI_RESOLVER_SERVICE_NAME = "HTTP-URI-Resolver";
+
+	public static String retrieveUriResolverOat(String scope) throws Exception {
+		try {
+			LOGGER.info("Retrieve URI Resolver Oat Service Info");
+
+			if (scope == null || scope.length() == 0) {
+				String error="Invalid request scope: " + scope;
+				LOGGER.error(error);
+				throw new Exception(error);
+			}
+
+			ScopeProvider.instance.set(scope);
+
+			SimpleQuery query = ICFactory.queryFor(ServiceEndpoint.class);
+			query.addCondition("$resource/Profile/Category/text() eq '" + URI_RESOLVER_SERVICE_CATEGORY + "'")
+					.addCondition("$resource/Profile/Name/text() eq '" + URI_RESOLVER_SERVICE_NAME + "'")
+					.setResult("$resource/Profile/RunTime");
+			DiscoveryClient<Runtime> client = ICFactory.clientFor(Runtime.class);
+		
+			List<Runtime> runtimeList = client.submit(query);
+			String serviceAddress = null;
+			if (runtimeList != null && !runtimeList.isEmpty()) {
+				for (int i = 0; i < runtimeList.size(); i++) {
+					Runtime accessPoint = runtimeList.get(i);
+					if (accessPoint != null) {
+						StringBuilder sb=new StringBuilder();
+						sb.append("https://");
+						sb.append(accessPoint.hostedOn());
+						sb.append("/oat/get");
+						serviceAddress=sb.toString();
+						break;
+					}
+				}
+			} else {
+				String error="RuntimeList error: "+runtimeList;
+				LOGGER.error(error);
+				throw new Exception(error);
+			}
+
+			LOGGER.info("Uri Resolver Oat Service Info: " + serviceAddress);
+			return serviceAddress;
+
+		} catch (Throwable e) {
+			LOGGER.error("Error in discovery Uri Resolver Oat Service Endpoint in scope: " + scope);
+			LOGGER.error(e.getLocalizedMessage(),e);
+			throw e;
+		}
+	}
+}

src/main/java/org/gcube/dataanalysis/wps/statisticalmanager/synchserver/mapping/AbstractEcologicalEngineMapper.java

@@ -48,10 +48,16 @@ import org.n52.wps.server.AbstractAnnotatedAlgorithm;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 
-public class AbstractEcologicalEngineMapper extends AbstractAnnotatedAlgorithm implements Observable, Cancellable{
+public class AbstractEcologicalEngineMapper extends AbstractAnnotatedAlgorithm implements Observable, Cancellable {
+
+	private static final int COMPUTATION_WAIT_FOR_RUN_REQUEST = 20000;
 
 	/**
-	 * Deploying procedure: 1 - modify configuration files 2 - modify resource file: resources/templates/setup.cfg 3 - generate classes with ClassGenerator 4 - add new classes in the wps_config.xml on the wps web app config folder 5 - produce the Jar file of this project 6 - copy the jar file in the lib folder of the wps web app change the server parameters in the wps_config.xml file
+	 * Deploying procedure: 1 - modify configuration files 2 - modify resource file:
+	 * resources/templates/setup.cfg 3 - generate classes with ClassGenerator 4 -
+	 * add new classes in the wps_config.xml on the wps web app config folder 5 -
+	 * produce the Jar file of this project 6 - copy the jar file in the lib folder
+	 * of the wps web app change the server parameters in the wps_config.xml file
 	 */
 
 	private static final Logger LOGGER = LoggerFactory.getLogger(AbstractEcologicalEngineMapper.class);
@@ -59,9 +65,11 @@ public class AbstractEcologicalEngineMapper extends AbstractAnnotatedAlgorithm i
 	private Observer observer = null;
 
 	private boolean cancelled = false;
-	
+
 	private TokenManager tokenm = null;
-	
+
+	private EnvironmentVariableManager env = null;
+
 	// inputs and outputs
 	public LinkedHashMap<String, Object> inputs = new LinkedHashMap<String, Object>();
 	public LinkedHashMap<String, Object> outputs = new LinkedHashMap<String, Object>();
@@ -78,30 +86,41 @@ public class AbstractEcologicalEngineMapper extends AbstractAnnotatedAlgorithm i
 		this.wpsExternalID = wpsExternalID;
 	}
 
-	public static synchronized void addComputation(String session, String user) {
+	private static synchronized void addComputation(String session, String user) {
 		runningcomputations.put(session, user);
 	}
 
-	public static synchronized void removeComputation(String session) {
+	private static synchronized void removeComputation(String session) {
 		runningcomputations.remove(session);
 	}
 
-	public static synchronized int getRuningComputations() {
+	private static synchronized int getRuningComputations() {
 		return runningcomputations.size();
 	}
 
-	public static synchronized String displayRunningComputations() {
+	private static synchronized String displayRunningComputations() {
 		return runningcomputations.toString();
 	}
 
-	public void waitForResources() throws Exception {
-		while (getRuningComputations() > ConfigurationManager.getMaxComputations()) {
-			Thread.sleep(20000);
+	private void waitForResources(String computationSession, String username, String scope) throws Exception {
+		while (waitCondition(computationSession, username, scope)) {
+			Thread.sleep(COMPUTATION_WAIT_FOR_RUN_REQUEST);
 			LOGGER.debug("Waiting for resources to be available: " + displayRunningComputations());
 		}
 
 	}
 
+	private static synchronized boolean waitCondition(String computationSession, String username, String scope) {
+		if (getRuningComputations() >= ConfigurationManager.getMaxComputations()) {
+			return true;
+		} else {
+			// add the computation to the global list of computations
+			LOGGER.debug("Add computation to run: {}", computationSession);
+			addComputation(computationSession, username + ":" + scope);
+			return false;
+		}
+	}
+
 	// inner objects
 	public AlgorithmConfiguration config;
 	public InfrastructureDialoguer infrastructureDialoguer;
@@ -203,7 +222,7 @@ public class AbstractEcologicalEngineMapper extends AbstractAnnotatedAlgorithm i
 						LOGGER.debug("Could not drop Temporary Table: " + table + " table is null");
 				}
 			} catch (Exception e) {
-				LOGGER.error("error deleting temporary table",e);
+				LOGGER.error("error deleting temporary table", e);
 			} finally {
 				DatabaseUtils.closeDBConnection(dbConnection);
 			}
@@ -246,14 +265,16 @@ public class AbstractEcologicalEngineMapper extends AbstractAnnotatedAlgorithm i
 
 	float previousStatus = -3;
 	String host = WPSConfig.getInstance().getWPSConfig().getServer().getHostname();
-	public void updateStatus(float status) {
+
+	public void updateStatus(float status, boolean canWrite) {
 		if (agent != null) {
 			if (status != previousStatus) {
-				LOGGER.debug("STATUS update to: {} ", status );
+				LOGGER.debug("STATUS update to: {} ", status);
 				previousStatus = status;
 				super.update(new Integer((int) status));
 				try {
-					updateComputationOnWS(status, null);
+					if (canWrite)
+						updateComputationOnWS(status, null);
 				} catch (Exception e) {
 					LOGGER.warn("error updating compution on WS");
 				}
@@ -262,16 +283,21 @@ public class AbstractEcologicalEngineMapper extends AbstractAnnotatedAlgorithm i
 
 	}
 
+	public void setEnvironmentVariableManager(EnvironmentVariableManager env) {
+		this.env = env;
+	}
+
 	public void updateComputationOnWS(float status, String exception) {
 		updateComputationOnWS(status, exception, null, null);
 	}
 
-	class RunDataspaceManager implements Runnable{
+	class RunDataspaceManager implements Runnable {
 		List<StoredData> inputData;
 		List<File> generatedData;
-		public RunDataspaceManager(List<StoredData> inputData,		List<File> generatedData){
-			this.inputData=inputData;
-			this.generatedData=generatedData;
+
+		public RunDataspaceManager(List<StoredData> inputData, List<File> generatedData) {
+			this.inputData = inputData;
+			this.generatedData = generatedData;
 		}
 
 		public void run() {
@@ -280,34 +306,35 @@ public class AbstractEcologicalEngineMapper extends AbstractAnnotatedAlgorithm i
 				LOGGER.debug("Dataspace->Status updater->Writing computational info on the WS asyncronously");
 				manager.writeRunningComputationData();
 			} catch (Exception ez) {
-				LOGGER.error("Dataspace->Status updater->Impossible to write computation information on the Workspace",ez);
+				LOGGER.error("Dataspace->Status updater->Impossible to write computation information on the Workspace",
+						ez);
 			}
 		}
 	};
 
-	public void updateComputationOnWS(float status, String exception, List<StoredData> inputData, List<File> generatedData) {
+	public void updateComputationOnWS(float status, String exception, List<StoredData> inputData,
+			List<File> generatedData) {
 		if (currentComputation != null) {
 			currentComputation.setStatus("" + status);
 			if (exception != null && exception.length() > 0)
 				currentComputation.setException(exception);
-
-			RunDataspaceManager rundm = new RunDataspaceManager(inputData,generatedData);
+			LOGGER.debug("RunDataspaceManager: [inputData=" + inputData + ", generatedData=" + generatedData + "]");
+			RunDataspaceManager rundm = new RunDataspaceManager(inputData, generatedData);
 			rundm.run();
 
 			/*
-			Thread t = new Thread(rundm);
-			t.start();
+			 * Thread t = new Thread(rundm); t.start();
 			 */
 		}
 	}
 
 	@Execute
 	public void run() throws Exception {
-		if (observer!=null)
+		if (observer != null)
 			observer.isStarted(this);
 
-		LOGGER.info("classloader context in this thread is {}",Thread.currentThread().getContextClassLoader());
-			
+		LOGGER.info("classloader context in this thread is {}", Thread.currentThread().getContextClassLoader());
+
 		long startTimeLong = System.currentTimeMillis();
 
 		OperationResult operationResult = null;
@@ -316,7 +343,8 @@ public class AbstractEcologicalEngineMapper extends AbstractAnnotatedAlgorithm i
 		List<String> generatedInputTables = null;
 		List<String> generatedOutputTables = null;
 		List<File> generatedFiles = null;
-		//String date = new java.text.SimpleDateFormat("dd_MM_yyyy_HH:mm:ss").format(System.currentTimeMillis());
+		// String date = new
+		// java.text.SimpleDateFormat("dd_MM_yyyy_HH:mm:ss").format(System.currentTimeMillis());
 		String computationSession = this.getAlgorithmClass().getSimpleName() + "_ID_" + UUID.randomUUID().toString();
 		if (wpsExternalID != null) {
 			LOGGER.info("Using wps External ID " + wpsExternalID);
@@ -324,13 +352,19 @@ public class AbstractEcologicalEngineMapper extends AbstractAnnotatedAlgorithm i
 		} else
 			LOGGER.info("Wps External ID not set");
 		InputsManager inputsManager = null;
-		ConfigurationManager configManager = new ConfigurationManager(); // initializes parameters from file
+		ConfigurationManager configManager = new ConfigurationManager(this.env); // initializes
+																					// parameters
+																					// from
+																					// web.xml
 		manageUserToken();
+
+		boolean canWriteOnShub = checkWriteAuthorization(tokenm.getUserName());
+
 		Path dir = Paths.get(System.getProperty("java.io.tmpdir"), "dmlocks");
 		if (!Files.exists(dir))
 			dir = Files.createDirectory(dir);
 		Path lockFile = Files.createTempFile(dir, "dm", ".lck");
-		LOGGER.info("lock file created {}",lockFile.toUri().toURL());
+		LOGGER.info("lock file created {}", lockFile.toUri().toURL());
 		try {
 
 			// wait for server resources to be available
@@ -344,17 +378,17 @@ public class AbstractEcologicalEngineMapper extends AbstractAnnotatedAlgorithm i
 			config = configManager.getConfig();
 			LOGGER.info("Configured algorithm with session " + computationSession);
 			time("Configuration");
-			waitForResources();
+			waitForResources(computationSession, configManager.getUsername(), configManager.getScope());
 			LOGGER.info("Running algorithm with session " + computationSession);
 			time("Waiting time for resources to be free");
-			// add the computation to the global list of computations
-			addComputation(computationSession, configManager.getUsername() + ":" + configManager.getScope());
 
 			String scope = configManager.getScope();
 			String username = configManager.getUsername();
 
-			LOGGER.info("1 - Algorithm environment initialized in scope " + scope + " with user name " + username + " and session " + computationSession);
-			LOGGER.info("Max allowed computations " + ConfigurationManager.getMaxComputations() + " using storage " + ConfigurationManager.useStorage());
+			LOGGER.info("1 - Algorithm environment initialized in scope " + scope + " with user name " + username
+					+ " and session " + computationSession);
+			LOGGER.info("Max allowed computations " + ConfigurationManager.getMaxComputations() + " using storage "
+					+ ConfigurationManager.useStorage());
 			// init the infrastructure dialoguer
 			LOGGER.info("2 - Initializing connection to the e-Infrastructure");
 			infrastructureDialoguer = new InfrastructureDialoguer(scope);
@@ -380,15 +414,19 @@ public class AbstractEcologicalEngineMapper extends AbstractAnnotatedAlgorithm i
 			time("Ecological Engine Algorithm selection");
 			// adding service parameters to the configuration
 			LOGGER.info("5 - Adding Service parameters to the configuration");
-			inputsManager.addInputServiceParameters(getInputParameters(algorithm), infrastructureDialoguer);
+			List<StatisticalType> dataminerInputParameters = getInputParameters(algorithm);
+			LOGGER.debug("Dataminer Algo Default InputParameters: " + dataminerInputParameters);
+			inputsManager.addInputServiceParameters(dataminerInputParameters, infrastructureDialoguer);
 			time("Service parameters added to the algorithm");
 			// merging wps with ecological engine parameters - modifies the
 			// config
 			LOGGER.info("6 - Translating WPS Inputs into Ecological Engine Inputs");
 			LOGGER.debug("Operator class is " + this.getClass().getCanonicalName());
 			// build computation Data
-			currentComputation = new ComputationData(config.getTaskID(), config.getAgent(), "", "", startTime, "-", "0", config.getTaskID(), configManager.getUsername(), config.getGcubeScope(), this.getClass().getCanonicalName());
-			inputsManager.mergeWpsAndEcologicalInputs(supportDatabaseInfo);
+			currentComputation = new ComputationData(config.getTaskID(), config.getAgent(), "", "", startTime, "-", "0",
+					config.getTaskID(), configManager.getUsername(), config.getGcubeScope(),
+					this.getClass().getCanonicalName());
+			inputsManager.mergeWpsAndEcologicalInputs(supportDatabaseInfo, dataminerInputParameters);
 			generatedInputTables = inputsManager.getGeneratedTables();
 			generatedFiles = inputsManager.getGeneratedInputFiles();
 			time("Setup and download of input parameters with tables creation");
@@ -412,11 +450,11 @@ public class AbstractEcologicalEngineMapper extends AbstractAnnotatedAlgorithm i
 			LOGGER.info("9 - Running the computation and updater");
 
 			LOGGER.info("Initializing the WPS status of the computation");
-			updateStatus(0);
+			updateStatus(0, canWriteOnShub);
 			LOGGER.info("Initializing the computation");
 			agent.init();
 			LOGGER.info("Updating status");
-			runStatusUpdater();
+			runStatusUpdater(canWriteOnShub);
 			LOGGER.info("Running the computation");
 			agent.compute();
 			LOGGER.info("The computation has finished. Retrieving output");
@@ -440,13 +478,15 @@ public class AbstractEcologicalEngineMapper extends AbstractAnnotatedAlgorithm i
 
 			outputmanager.shutdown();
 
-			// delete all temporary tables
-			LOGGER.info("12 - Deleting possible generated temporary tables");
-			LOGGER.debug("Final Computation Output: " + outputs);
+			LOGGER.debug("12 - Final Computation Output");
+			LOGGER.debug("Outputs: " + outputs);
 
 			endTime = new java.text.SimpleDateFormat("dd/MM/yyyy HH:mm:ss").format(System.currentTimeMillis());
 			if (!isCancelled()) {
-				saveComputationOnWS(inputsManager.getProvenanceData(), outputmanager.getProvenanceData(), agent, generatedFiles);
+				LOGGER.debug("Save Computation Data");
+				if (canWriteOnShub)
+					saveComputationOnWS(inputsManager.getProvenanceData(), outputmanager.getProvenanceData(), agent,
+							generatedFiles);
 			} else {
 				LOGGER.debug("Computation interrupted - no update");
 				throw new Exception("Computation cancelled");
@@ -455,21 +495,26 @@ public class AbstractEcologicalEngineMapper extends AbstractAnnotatedAlgorithm i
 			operationResult = OperationResult.SUCCESS;
 		} catch (Exception e) {
 			operationResult = OperationResult.FAILED;
-			LOGGER.error("Error execution Algorithm {}",algorithm,e);
+			LOGGER.error("Error execution Algorithm {}", algorithm, e);
 			int exitstatus = -2;
 			if (isCancelled())
 				exitstatus = -1;
 
 			if (inputsManager != null)
-				updateComputationOnWS(exitstatus, e.getMessage(), inputsManager.getProvenanceData(), generatedFiles);
-			else
-				updateComputationOnWS(exitstatus, e.getMessage());
+				if (canWriteOnShub)
+					updateComputationOnWS(exitstatus, e.getMessage(), inputsManager.getProvenanceData(),
+							generatedFiles);
+				else if (canWriteOnShub)
+					updateComputationOnWS(exitstatus, e.getMessage());
 			if (isCancelled())
 				throw new Exception("Computation cancelled");
 			else
 				throw e;
 		} finally {
 			LOGGER.debug("accounting algorithm");
+			if (operationResult == null) {
+				operationResult = OperationResult.FAILED;
+			}
 			accountAlgorithmExecution(startTimeLong, System.currentTimeMillis(), operationResult);
 			LOGGER.debug("Deleting Input Tables");
 			deleteTemporaryTables(generatedInputTables);
@@ -483,60 +528,98 @@ public class AbstractEcologicalEngineMapper extends AbstractAnnotatedAlgorithm i
 			time("Cleaning of resources");
 			displayTimes();
 			cleanResources();
-			if (observer!=null) observer.isFinished(this);
+			if (observer != null)
+				observer.isFinished(this);
 			LOGGER.debug("All done - Computation Finished");
 			Files.deleteIfExists(lockFile);
 		}
 
 	}
 
+	private boolean checkWriteAuthorization(String username) {
+		if (env != null) {
+			if (env.getShubUsersExcluded() != null) {
+				if (env.getShubUsersExcluded().isEmpty()) {
+					// all users write
+					return true;
+				}
+				if (env.getShubUsersExcluded().contains(username)) {
+					return false;
+				} else {
+					// username write
+					return true;
+				}
+			} else {
+				//This is the * case, no users write.
+				return false;
+			}
+		} else {
+			return false;
+		}
+	}
+
 	private void accountAlgorithmExecution(long start, long end, OperationResult result) {
-		try{
+		try {
 			JobUsageRecord jobUsageRecord = new JobUsageRecord();
 			jobUsageRecord.setJobName(this.getAlgorithmClass().getSimpleName());
 			jobUsageRecord.setConsumerId(tokenm.getUserName());
-			jobUsageRecord.setDuration(end-start);
+			jobUsageRecord.setDuration(end - start);
 			jobUsageRecord.setOperationResult(result);
 			jobUsageRecord.setServiceName("DataMiner");
 			jobUsageRecord.setServiceClass("WPS");
 			jobUsageRecord.setHost(WPSConfig.getInstance().getWPSConfig().getServer().getHostname());
 			jobUsageRecord.setCallerQualifier(tokenm.getTokenQualifier());
-			
-			AccountingPersistence accountingPersistence = 
-					AccountingPersistenceFactory.getPersistence();
+
+			AccountingPersistence accountingPersistence = AccountingPersistenceFactory.getPersistence();
 			accountingPersistence.account(jobUsageRecord);
-		}catch(Throwable e){
-			LOGGER.error("error accounting algorithm execution",e);
+		} catch (Throwable e) {
+			LOGGER.error("error accounting algorithm execution", e);
 		}
 
 	}
 
 	public class StatusUpdater implements Runnable {
 
+		private boolean canWrite = true;
+
+		public StatusUpdater(boolean canWrite) {
+			this.canWrite = canWrite;
+		}
+
 		@Override
 		public void run() {
 			while (agent != null && !isCancelled() && agent.getStatus() < 100) {
 				try {
-					updateStatus(agent.getStatus());
+					updateStatus(agent.getStatus(), canWrite);
 					Thread.sleep(10000);
-				} catch (InterruptedException e) {}
+				} catch (InterruptedException e) {
+				}
 			}
 			LOGGER.info("Status updater terminated");
 		}
 	}
 
-	private void runStatusUpdater() {
-		StatusUpdater updater = new StatusUpdater();
+	private void runStatusUpdater(boolean canWrite) {
+		StatusUpdater updater = new StatusUpdater(canWrite);
 
 		Thread t = new Thread(updater);
 		t.start();
 		LOGGER.debug("Provenance manager running");
 	}
 
-	private void saveComputationOnWS(List<StoredData> inputData, List<StoredData> outputData, ComputationalAgent agent, List<File> generatedFiles) {
+	private void saveComputationOnWS(List<StoredData> inputData, List<StoredData> outputData, ComputationalAgent agent,
+			List<File> generatedFiles) {
+		LOGGER.debug("Save Computation On WS");
+		LOGGER.debug("InputData: " + inputData);
+		LOGGER.debug("OutputData: " + outputData);
+		LOGGER.debug("Agent: " + agent);
+		LOGGER.debug("Generated files: " + generatedFiles);
 		LOGGER.debug("Provenance manager started for operator " + this.getClass().getCanonicalName());
 
-		ComputationData computation = new ComputationData(config.getTaskID(), config.getAgent(), agent.getDescription(), agent.getInfrastructure().name(), startTime, endTime, "100", config.getTaskID(), config.getParam(ConfigurationManager.serviceUserNameParameterVariable), config.getGcubeScope(), this.getClass().getCanonicalName());
+		ComputationData computation = new ComputationData(config.getTaskID(), config.getAgent(), agent.getDescription(),
+				agent.getInfrastructure().name(), startTime, endTime, "100", config.getTaskID(),
+				config.getParam(ConfigurationManager.serviceUserNameParameterVariable), config.getGcubeScope(),
+				this.getClass().getCanonicalName());
 		// post on WS
 		DataspaceManager manager = new DataspaceManager(config, computation, inputData, outputData, generatedFiles);
 
@@ -601,7 +684,8 @@ public class AbstractEcologicalEngineMapper extends AbstractAnnotatedAlgorithm i
 
 	public static List<String> command(final String cmdline, final String directory) {
 		try {
-			Process process = new ProcessBuilder(new String[] { "bash", "-c", cmdline }).redirectErrorStream(true).directory(new File(directory)).start();
+			Process process = new ProcessBuilder(new String[] { "bash", "-c", cmdline }).redirectErrorStream(true)
+					.directory(new File(directory)).start();
 
 			List<String> output = new ArrayList<String>();
 			BufferedReader br = new BufferedReader(new InputStreamReader(process.getInputStream()));
@@ -622,16 +706,16 @@ public class AbstractEcologicalEngineMapper extends AbstractAnnotatedAlgorithm i
 
 	@Override
 	public void setObserver(Observer o) {
-		LOGGER.debug("setting observer in {} ",wpsExternalID);
-		this.observer = o;		
+		LOGGER.debug("setting observer in {} ", wpsExternalID);
+		this.observer = o;
 	}
 
 	@Override
 	public synchronized boolean cancel() {
-		if (!cancelled){
-			LOGGER.debug("COMPUTATION INTERRUPTED! ({})",wpsExternalID);
-			try{
-				if (agent!=null){
+		if (!cancelled) {
+			LOGGER.debug("COMPUTATION INTERRUPTED! ({})", wpsExternalID);
+			try {
+				if (agent != null) {
 					agent.shutdown();
 					agent = null;
 				}
@@ -644,12 +728,12 @@ public class AbstractEcologicalEngineMapper extends AbstractAnnotatedAlgorithm i
 				}
 				System.gc();
 				cancelled = true;
-			}catch(Exception e){
-				LOGGER.warn("error cancelling computation with id {}",wpsExternalID);
+			} catch (Exception e) {
+				LOGGER.warn("error cancelling computation with id {}", wpsExternalID);
 				return false;
 			}
 		} else {
-			LOGGER.debug("COMPUTATION ALREADY INTERRUPT! ({})",wpsExternalID);
+			LOGGER.debug("COMPUTATION ALREADY INTERRUPT! ({})", wpsExternalID);
 			return false;
 		}
 		return true;

src/main/java/org/gcube/dataanalysis/wps/statisticalmanager/synchserver/mapping/ConfigurationManager.java

@@ -14,7 +14,7 @@ import org.slf4j.LoggerFactory;
 public class ConfigurationManager {
 
 	private static final Logger logger = LoggerFactory.getLogger(ConfigurationManager.class);
-	
+
 	public static String serviceUserNameParameterVariable = "ServiceUserName";
 	public static String processingSessionVariable = "Session";
 	public static String webpathVariable = "WebPath";
@@ -22,26 +22,33 @@ public class ConfigurationManager {
 	public static String usernameParameter = "user.name";
 	public static String scopeParameter = "scope";
 	public static String tokenParameter = "usertoken";
-	public static String defaultScope= "/gcube/devsec";
-	public static String defaultUsername= "statistical.wps";
-	
+	public static String defaultScope = "/gcube/devsec";
+	public static String defaultUsername = "statistical.wps";
+
 	private static Integer maxComputations = null;
 	private static Boolean useStorage = null;
 	static boolean simulationMode = false;
-	
-	public static synchronized Integer getMaxComputations(){
+
+	EnvironmentVariableManager env = null;
+
+	public static synchronized Integer getMaxComputations() {
 		return maxComputations;
 	}
-	
-	public static synchronized Boolean useStorage(){
+
+	public static synchronized Boolean useStorage() {
 		return useStorage;
 	}
-	
-	public static synchronized Boolean isSimulationMode(){
+
+	public static synchronized Boolean isSimulationMode() {
 		return simulationMode;
 	}
-	
+
+	@Deprecated
 	public void getInitializationProperties() {
+
+	}
+
+	private void inizializePropertiesUsingTemplateFile() {
 		try {
 			if (maxComputations == null) {
 				Properties options = new Properties();
@@ -49,11 +56,12 @@ public class ConfigurationManager {
 				options.load(is);
 				is.close();
 				maxComputations = Integer.parseInt(options.getProperty("maxcomputations"));
+				logger.info("setting max computation to {}", maxComputations);
 				useStorage = Boolean.parseBoolean(options.getProperty("saveond4sstorage"));
-				simulationMode=Boolean.parseBoolean(options.getProperty("simulationMode"));
+				simulationMode = Boolean.parseBoolean(options.getProperty("simulationMode"));
 			}
 		} catch (Exception e) {
-			logger.error("error initializing properties",e);
+			logger.error("error initializing properties", e);
 		}
 	}
 
@@ -70,67 +78,74 @@ public class ConfigurationManager {
 		return username;
 	}
 
-	public ConfigurationManager() {
-		getInitializationProperties();
+	public ConfigurationManager(EnvironmentVariableManager env) {
+		if (env == null)
+			inizializePropertiesUsingTemplateFile();
+		else {
+			maxComputations = env.getMaxComputation();
+			useStorage = env.isSaveOnStorage();
+			simulationMode = env.isSimulationMode();
+		}
 	}
 
 	public AlgorithmConfiguration getConfig() {
 		return config;
 	}
 
-	public void setComputationId(String computationId){
+	public void setComputationId(String computationId) {
 		config.setTaskID(computationId);
 	}
-	
+
 	public void configAlgorithmEnvironment(LinkedHashMap<String, Object> inputs) throws Exception {
 		// set config container
 		config = new AlgorithmConfiguration();
 		config.setAlgorithmClassLoader(Thread.currentThread().getContextClassLoader());
 		String webperspath = WPSConfig.getConfigDir() + "../persistence/";
 		// selecting persistence path
-//		String persistencePath = File.createTempFile("wpsstatcheck", ".sm").getParent() + "/../cfg/";
-	
-		//TODO: REMOVE this shit (the persistence must be the persistence dir of the webapp)
 		String persistencePath = WPSConfig.getConfigDir() + "../ecocfg/";
 		String configPath = persistencePath;
 		if (!new File(configPath).isDirectory()) {
 			configPath = "./cfg/";
 			persistencePath = "./";
 		}
-		logger.debug("Taking configuration from " + (new File(configPath).getAbsolutePath()) + " and persistence in " + persistencePath);
+		logger.debug("Taking configuration from  {}", configPath);
+		// + " and persistence in " + persistencePath);
 		// setting configuration and logger
-		config.setPersistencePath(persistencePath);
+		config.setPersistencePath(configPath);
 		config.setConfigPath(configPath);
 		config.setNumberOfResources(1);
 		// setting application paths
+		String protocol = WPSConfig.getInstance().getWPSConfig().getServer().getProtocol();
 		String webapp = WPSConfig.getInstance().getWPSConfig().getServer().getWebappPath();
 		String host = WPSConfig.getInstance().getWPSConfig().getServer().getHostname();
 		String port = WPSConfig.getInstance().getWPSConfig().getServer().getHostport();
-		logger.debug("Host: " + host + " Port: " + port + " Webapp: " + webapp + " ");
-		logger.debug("Web persistence path: " + webperspath);
-		
-		String webPath = "http://" + host + ":" + port + "/" + webapp + "/persistence/";
-		
+		logger.debug("Protocol: {} , Host: {} , Port: {} , Webapp: {} ", protocol, host, port, webapp);
+		logger.info("Web Path Persistence: {}", webperspath);
+
+		String webPath = protocol + "://" + host + ":" + port + "/" + webapp + "/persistence/";
+
 		// logger.debug("Env Vars: \n"+System.getenv());
-		logger.debug("Web app path: " + webPath);
+		logger.info("Web Path Persistence Url: {}", webPath);
 
 		// retrieving scope
 		scope = (String) inputs.get(scopeParameter);
-		logger.debug("Retrieved scope: " + scope);
+		logger.debug("Retrieved scope: {} ", scope);
 		if (scope == null)
-			throw new Exception("Error: scope parameter (scope) not set! This violates e-Infrastructure security policies");
+			throw new Exception(
+					"Error: scope parameter (scope) not set! This violates e-Infrastructure security policies");
 		if (!scope.startsWith("/"))
 			scope = "/" + scope;
 
 		username = (String) inputs.get(usernameParameter);
 		token = (String) inputs.get(tokenParameter);
-		
-		logger.debug("User name used by the client: " + username);
-		logger.debug("User token used by the client: " + token);
-		
+
+		logger.debug("User name used by the client:{} ", username);
+		logger.debug("User token used by the client:{} ", token);
+
 		if (username == null || username.trim().length() == 0)
-			throw new Exception("Error: user name parameter (user.name) not set! This violates e-Infrastructure security policies");
-		
+			throw new Exception(
+					"Error: user name parameter (user.name) not set! This violates e-Infrastructure security policies");
+
 		if (token == null || token.trim().length() == 0)
 			throw new Exception("Error: token parameter not set! This violates e-Infrastructure security policies");
 
@@ -139,7 +154,7 @@ public class ConfigurationManager {
 		config.setGcubeToken(token);
 		// DONE get username from request
 		config.setParam(serviceUserNameParameterVariable, username);
-		config.setParam(processingSessionVariable, "" + UUID.randomUUID());
+		config.setParam(processingSessionVariable, UUID.randomUUID().toString());
 		config.setParam(webpathVariable, webPath);
 		config.setParam(webPersistencePathVariable, webperspath);
 

src/main/java/org/gcube/dataanalysis/wps/statisticalmanager/synchserver/mapping/EnvironmentVariableManager.java

@@ -0,0 +1,38 @@
+package org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mapping;
+
+import java.util.List;
+
+public class EnvironmentVariableManager {
+	
+	public EnvironmentVariableManager(int maxComputation, boolean saveOnStorage, boolean simulationMode, List<String> shubUsersExcluded) {
+		super();
+		this.maxComputation = maxComputation;
+		this.saveOnStorage = saveOnStorage;
+		this.simulationMode = simulationMode;
+		this.shubUsersExcluded = shubUsersExcluded;
+	}
+	
+	private int maxComputation;
+	private boolean saveOnStorage;
+	private boolean  simulationMode;
+	
+	//null: all users will write on SHub
+	//empty: no one will write on Shub
+	//filled: users reported will not write on Shub
+	private List<String> shubUsersExcluded;
+	
+	public int getMaxComputation() {
+		return maxComputation;
+	}
+	public boolean isSaveOnStorage() {
+		return saveOnStorage;
+	}
+	public boolean isSimulationMode() {
+		return simulationMode;
+	}
+	
+	public List<String> getShubUsersExcluded() {
+		return shubUsersExcluded;
+	}
+
+}

src/main/java/org/gcube/dataanalysis/wps/statisticalmanager/synchserver/mapping/InputsManager.java

@@ -5,6 +5,7 @@ import java.io.BufferedReader;
 import java.io.File;
 import java.io.FileOutputStream;
 import java.io.FileReader;
+import java.io.IOException;
 import java.io.InputStream;
 import java.net.HttpURLConnection;
 import java.net.URL;
@@ -41,7 +42,9 @@ import org.slf4j.LoggerFactory;
 
 public class InputsManager {
 
-	private static final Logger LOGGER = LoggerFactory.getLogger(InputsManager.class); 
+	private static final Logger LOGGER = LoggerFactory.getLogger(InputsManager.class);
+
+	private static final long SHUB_RETRY_MILLIS = 2000;
 
 	LinkedHashMap<String, Object> inputs;
 	List<String> generatedTables;
@@ -51,11 +54,11 @@ public class InputsManager {
 	String computationId;
 
 	List<StoredData> provenanceData = new ArrayList<StoredData>();
+
 	public List<StoredData> getProvenanceData() {
 		return provenanceData;
 	}
 
-
 	public static String inputsSeparator = "\\|";
 
 	public AlgorithmConfiguration getConfig() {
@@ -92,30 +95,35 @@ public class InputsManager {
 		config.setParam("DatabaseURL", supportDatabaseInfo.url);
 	}
 
-	public void mergeWpsAndEcologicalInputs(DatabaseInfo supportDatabaseInfo) throws Exception {
+	public void mergeWpsAndEcologicalInputs(DatabaseInfo supportDatabaseInfo,
+			List<StatisticalType> dataminerInputParameters) throws Exception {
+		LOGGER.debug("Merge WPS And Ecological Inputs");
 		// browse input parameters from WPS
 		for (String inputName : inputs.keySet()) {
 			Object input = inputs.get(inputName);
-			LOGGER.debug("Managing Input Parameter with Name "+ inputName);
+			LOGGER.debug("Managing Input Parameter with Name " + inputName);
 			// case of simple input
 			if (input instanceof String) {
-				LOGGER.debug("Simple Input: "+ input);
+				LOGGER.debug("Simple Input: " + input);
 				// manage lists
 				String inputAlgoOrig = ((String) input).trim();
-				String inputAlgo = ((String) input).trim().replaceAll(inputsSeparator, AlgorithmConfiguration.listSeparator);
+				String inputAlgo = ((String) input).trim().replaceAll(inputsSeparator,
+						AlgorithmConfiguration.listSeparator);
 				LOGGER.debug("Simple Input Transformed: " + inputAlgo);
 				config.setParam(inputName, inputAlgo);
 
-				saveInputData(inputName,inputName,inputAlgoOrig);
+				saveInputData(inputName, inputName, inputAlgoOrig);
 			}
 			// case of Complex Input
 			else if (input instanceof GenericFileData) {
 
-				LOGGER.debug("Complex Input: " + input);
+				LOGGER.debug("Complex Input");
 				// retrieve payload
 				GenericFileData files = ((GenericFileData) input);
+				LOGGER.debug("GenericFileData: [fileExtension=" + files.getFileExtension() + ", mimeType="
+						+ files.getMimeType() + "]");
 
-				List<File> localfiles = getLocalFiles(files,inputName);
+				List<File> localfiles = getLocalFiles(files, inputName, dataminerInputParameters);
 				String inputtables = "";
 				int nfiles = localfiles.size();
 				StringBuffer sb = new StringBuffer();
@@ -128,10 +136,11 @@ public class InputsManager {
 
 					if (inputTableTemplates.get(inputName) != null) {
 						LOGGER.debug("Creating table: " + tableName);
-						createTable(tableName, tableFile, config, supportDatabaseInfo, inputTableTemplates.get(inputName));
+						createTable(tableName, tableFile, config, supportDatabaseInfo,
+								inputTableTemplates.get(inputName));
 						generatedTables.add(tableName);
 					}
-					//case of non-table input file, e.g. FFANN
+					// case of non-table input file, e.g. FFANN
 					else
 						tableName = tableFile.getAbsolutePath();
 					if (i > 0)
@@ -140,13 +149,13 @@ public class InputsManager {
 					inputtables += tableName;
 
 					saveInputData(tableFile.getName(), inputName, tableFile.getAbsolutePath());
-					if (i>0)
+					if (i > 0)
 						sb.append("|");
 
 					sb.append(tableFile.getName());
 				}
 				sb.append("|");
-				if (nfiles>0)
+				if (nfiles > 0)
 					saveInputData(inputName, inputName, sb.toString());
 
 				// the only possible complex input is a table - check the WPS
@@ -157,15 +166,15 @@ public class InputsManager {
 
 	}
 
-	public boolean isXML(String fileContent){
+	public boolean isXML(String fileContent) {
 
 		if (fileContent.startsWith("&lt;"))
 			return true;
-		else 
+		else
 			return false;
 	}
 
-	public String readOneLine(String filename){
+	public String readOneLine(String filename) {
 
 		try {
 			BufferedReader in = new BufferedReader(new FileReader(new File(filename)));
@@ -173,7 +182,7 @@ public class InputsManager {
 			String vud = "";
 
 			while ((line = in.readLine()) != null) {
-				if (line.trim().length()>0){
+				if (line.trim().length() > 0) {
 					vud = line.trim();
 					break;
 				}
@@ -183,64 +192,85 @@ public class InputsManager {
 		} catch (Exception e) {
 			e.printStackTrace();
 			return null;
-		} 
+		}
 	}
 
-	public String inputNameFromHttpHeader(String url) throws Exception{
+	public String inputNameFromHttpHeader(String url) throws Exception {
+		LOGGER.debug("Search filename in http header from: " + url);
 		URL obj = new URL(url);
 		URLConnection conn = obj.openConnection();
-		String filename=null;
+		String filename = null;
 		// get all headers
 		Map<String, List<String>> map = conn.getHeaderFields();
-		LOGGER.debug("Getting file name from http header");
 		for (Map.Entry<String, List<String>> entry : map.entrySet()) {
 			String value = entry.getValue().toString();
-			if (value.toLowerCase().contains("filename=")){
-				LOGGER.debug("Searching in http header: found file name in header value "+value);
-				filename=value.substring(value.indexOf("=")+1);
-				filename=filename.replace("\"", "").replace("]", "");
-				LOGGER.debug("Searching in http header: retrieved file name "+filename);
+			LOGGER.debug("Header value: " + value);
+			if (value.toLowerCase().contains("filename")) {
+				LOGGER.debug("Searching in http header: found file name in header value {}", value);
+				filename = value.substring(value.indexOf("=") + 1);
+				filename = filename.replace("\"", "").replace("]", "");
+				LOGGER.debug("Searching in http header: retrieved file name {}", filename);
 				break;
 			}
 		}
+		LOGGER.debug("Filename retrieved from http header: " + filename);
 		return filename;
 	}
 
-	public List<File> getLocalFiles(GenericFileData files,String inputName) throws Exception {
-
+	public List<File> getLocalFiles(GenericFileData files, String inputName,
+			List<StatisticalType> dataminerInputParameters) throws Exception {
+		LOGGER.debug("GetLocalFiles: [files: " + files + ", inputName: " + inputName + "]");
 		// download input
 		List<File> filesList = new ArrayList<File>();
 		File f = files.getBaseFile(false);
-		LOGGER.debug("Retrieving file content as a URL link: " + f.getAbsolutePath());
-		//TODO DO NOT READ FILE INTO MEMORY
+		LOGGER.debug("Retrieving local files: " + f.getAbsolutePath());
+		// TODO DO NOT READ FILE INTO MEMORY
 		// read file content
 		String fileLink = readOneLine(f.getAbsolutePath());
-		LOGGER.debug("File link: " + fileLink.substring(0,Math.min(fileLink.length(),10)) + "...");
+		LOGGER.debug("Check File is link: {} ...", fileLink.substring(0, Math.min(fileLink.length(), 10)));
 		String fileName = "";
 		// case of a http link
-		if (fileLink!=null && fileLink.toLowerCase().startsWith("http:") || fileLink.toLowerCase().startsWith("https:")) {
+		if (fileLink != null
+				&& (fileLink.toLowerCase().startsWith("http:") || fileLink.toLowerCase().startsWith("https:"))) {
 			// manage the case of multiple files
+			LOGGER.debug("Complex Input payload is link");
+
+			LOGGER.debug("Retrieving files from url: " + fileLink);
 			String[] remotefiles = fileLink.split(inputsSeparator);
 			for (String subfilelink : remotefiles) {
 				subfilelink = subfilelink.trim();
-				LOGGER.debug("Managing link: " + subfilelink);
+				LOGGER.debug("Managing link: {}", subfilelink);
 				if (subfilelink.length() == 0)
 					continue;
 				InputStream is = null;
 				HttpURLConnection urlConnection = null;
 				URL url = new URL(subfilelink);
-				urlConnection = (HttpURLConnection) url.openConnection();
-				is = new BufferedInputStream(urlConnection.getInputStream());
+				try {
+					urlConnection = (HttpURLConnection) url.openConnection();
+					is = new BufferedInputStream(urlConnection.getInputStream());
+				}catch(IOException e) {
+					LOGGER.warn("download from storagehub failed. Retry ongoing...");
+					LOGGER.debug("waiting "+SHUB_RETRY_MILLIS+" millis ");
+					Thread.sleep(SHUB_RETRY_MILLIS);					
+					urlConnection = (HttpURLConnection) url.openConnection();
+					is = new BufferedInputStream(urlConnection.getInputStream());
+					LOGGER.debug(" retry success ");
+				}				
 				// retrieve payload: for test purpose only
 				String fileNameTemp = inputNameFromHttpHeader(subfilelink);
 
-				if (fileNameTemp==null)
-					fileName = inputName+"_[" + computationId + "]";
-				else
-					fileName = fileNameTemp+ "_[" + computationId + "]."+FilenameUtils.getExtension(fileNameTemp);
+				LOGGER.debug("the fileNameTemp is {}", fileNameTemp);
+
+				if (fileNameTemp != null && !fileNameTemp.isEmpty()) {
+					fileName = String.format("%s_(%s).%s", inputName, computationId,
+							FilenameUtils.getExtension(fileNameTemp));
+				} else {
+					fileName = String.format("%s_(%s).%s", inputName, computationId,
+							FilenameUtils.getExtension(inputName));
+
+				}
+				LOGGER.debug("the name of the generated file is {}", fileName);
 
-				LOGGER.debug("Retrieving remote input in file: " + fileName);
-				LOGGER.debug("Creating local temp file: " + fileName);
 				File of = new File(config.getPersistencePath(), fileName);
 				FileOutputStream fos = new FileOutputStream(of);
 				IOUtils.copy(is, fos);
@@ -249,32 +279,57 @@ public class InputsManager {
 				fos.close();
 				urlConnection.disconnect();
 				filesList.add(of);
-				LOGGER.debug("Created local file: " + of.getAbsolutePath());
+				LOGGER.debug("Created local file: {}", of.getAbsolutePath());
 			}
 		} else {
-			LOGGER.debug("Complex Input payload is the filelink");
+			LOGGER.debug("Complex Input payload is file");
 			fileName = f.getName();
-			LOGGER.debug("Retriving local input from file: " + fileName);
 
-			if (isXML(fileLink))
-			{
+			LOGGER.debug("Retrieving local input from file: {}", fileName);
+
+			String fileExt = null;
+
+			if (isXML(fileLink)) {
 				String xmlFile = f.getAbsolutePath();
-				String csvFile = xmlFile+".csv";
-				LOGGER.debug("Transforming XML file into a csv: " +  csvFile);
+				String csvFile = xmlFile + ".csv";
+				LOGGER.debug("Transforming XML file into a csv: {} ", csvFile);
 				GML2CSV.parseGML(xmlFile, csvFile);
-				LOGGER.debug("GML Parsed: " + readOneLine(csvFile)+"[..]");
+				LOGGER.debug("GML Parsed: {} [..]", readOneLine(csvFile));
 				f = new File(csvFile);
+				fileExt = "csv";
+			} else {
+				LOGGER.debug("The file is a csv: {}", f.getAbsolutePath());
+				fileExt = FilenameUtils.getExtension(fileName);
 			}
-			else{
-				LOGGER.debug("The file is a csv: " + f.getAbsolutePath());
+
+			LOGGER.debug("Retrieve default extension");
+			String fileDefaultValue = null;
+			for (StatisticalType defaultInputParameter : dataminerInputParameters) {
+				if (defaultInputParameter.getName().compareTo(inputName) == 0) {
+					fileDefaultValue = defaultInputParameter.getDefaultValue();
+					break;
+				}
 			}
-			String absFile = new File(f.getParent(),inputName+ "_[" + computationId + "].csv").getAbsolutePath();
-			LOGGER.debug("Renaming to: "+absFile);
+			LOGGER.debug("Parameter default value retrieved: " + fileDefaultValue);
+
+			if (fileDefaultValue != null && !fileDefaultValue.isEmpty()) {
+				int lastPointIndex = fileDefaultValue.lastIndexOf(".");
+				if (lastPointIndex > -1 && lastPointIndex < (fileDefaultValue.length() - 1)) {
+					fileExt = fileDefaultValue.substring(lastPointIndex + 1);
+					LOGGER.debug("Default Extension retrieved: " + fileExt);
+				}
+			}
+
+			LOGGER.debug("Use extension: " + fileExt);
+
+			String absFile = new File(f.getParent(), String.format("%s_(%s).%s", inputName, computationId, fileExt))
+					.getAbsolutePath();
+			LOGGER.debug("Renaming to: " + absFile);
 			System.gc();
 			boolean renamed = f.renameTo(new File(absFile));
 			if (renamed)
 				f = new File(absFile);
-			LOGGER.debug("The file has been renamed as : " + f.getAbsolutePath()+" - "+renamed);
+			LOGGER.debug("The file has been renamed as : {} - {}", f.getAbsolutePath(), renamed);
 			filesList.add(f);
 
 		}
@@ -282,7 +337,8 @@ public class InputsManager {
 		return filesList;
 	}
 
-	public void createTable(String tableName, File tableFile, AlgorithmConfiguration config, DatabaseInfo supportDatabaseInfo, String inputTableTemplate) throws Exception {
+	public void createTable(String tableName, File tableFile, AlgorithmConfiguration config,
+			DatabaseInfo supportDatabaseInfo, String inputTableTemplate) throws Exception {
 
 		// creating table
 		LOGGER.debug("Complex Input size after download: " + tableFile.length());
@@ -308,11 +364,13 @@ public class InputsManager {
 			TableTemplatesMapper mapper = new TableTemplatesMapper();
 			String createstatement = mapper.generateCreateStatement(tableName, templatename, tableStructure);
 			LOGGER.debug("Creating table: " + tableName);
-			DatabaseUtils.createBigTable(true, tableName, supportDatabaseInfo.driver, supportDatabaseInfo.username, supportDatabaseInfo.password, supportDatabaseInfo.url, createstatement, dbConnection);
-			DatabaseUtils.createRemoteTableFromFile(tableFile.getAbsolutePath(), tableName, ",", true, supportDatabaseInfo.username, supportDatabaseInfo.password, supportDatabaseInfo.url);
+			DatabaseUtils.createBigTable(true, tableName, supportDatabaseInfo.driver, supportDatabaseInfo.username,
+					supportDatabaseInfo.password, supportDatabaseInfo.url, createstatement, dbConnection);
+			DatabaseUtils.createRemoteTableFromFile(tableFile.getAbsolutePath(), tableName, ",", true,
+					supportDatabaseInfo.username, supportDatabaseInfo.password, supportDatabaseInfo.url);
 
 		} catch (Exception e) {
-			LOGGER.error("Error in database transaction " ,e);
+			LOGGER.error("Error in database transaction ", e);
 			throw new Exception("Error in creating the table for " + tableName + ": " + e.getLocalizedMessage());
 		} finally {
 			DatabaseUtils.closeDBConnection(dbConnection);
@@ -368,7 +426,8 @@ public class InputsManager {
 		return structure.toString();
 	}
 
-	public void addInputServiceParameters(List<StatisticalType> agentInputs, InfrastructureDialoguer infrastructureDialoguer) throws Exception {
+	public void addInputServiceParameters(List<StatisticalType> agentInputs,
+			InfrastructureDialoguer infrastructureDialoguer) throws Exception {
 
 		// check and fullfil additional parameters
 		DatabaseInfo dbinfo = null;
@@ -376,10 +435,10 @@ public class InputsManager {
 
 		for (StatisticalType type : agentInputs) {
 			if (type instanceof PrimitiveType) {
-				if (((PrimitiveType) type).getType()==PrimitiveTypes.CONSTANT){
-					String constant = ""+((PrimitiveType) type).getDefaultValue();
+				if (((PrimitiveType) type).getType() == PrimitiveTypes.CONSTANT) {
+					String constant = "" + ((PrimitiveType) type).getDefaultValue();
 					config.setParam(type.getName(), constant);
-					LOGGER.debug("Constant parameter: "+constant);
+					LOGGER.debug("Constant parameter: " + constant);
 				}
 			}
 			if (type instanceof ServiceType) {
@@ -392,10 +451,10 @@ public class InputsManager {
 				String value = "";
 				if (sp == ServiceParameters.RANDOMSTRING)
 					value = "stat" + UUID.randomUUID().toString().replace("-", "");
-				else if (sp == ServiceParameters.USERNAME){
+				else if (sp == ServiceParameters.USERNAME) {
 					value = (String) inputs.get(ConfigurationManager.usernameParameter);
 
-					LOGGER.debug("User name used by the client: "+value);
+					LOGGER.debug("User name used by the client: " + value);
 				}
 				LOGGER.debug("ServiceType Adding: (" + name + "," + value + ")");
 				config.setParam(name, value);
@@ -436,8 +495,8 @@ public class InputsManager {
 
 	}
 
-
-	private void saveInputData(String name, String description, String payload){
+	private void saveInputData(String name, String description, String payload) {
+		LOGGER.debug("SaveInputData [name="+name+", description="+description+", payload="+payload+"]");
 		String id = name;
 		DataProvenance provenance = DataProvenance.IMPORTED;
 		String creationDate = new java.text.SimpleDateFormat("dd/MM/yyyy HH:mm:ss").format(System.currentTimeMillis());
@@ -445,18 +504,17 @@ public class InputsManager {
 
 		String type = "text/plain";
 
-		if (payload != null && (new File (payload).exists())) {
+		if (payload != null && (new File(payload).exists())) {
 			if (payload.toLowerCase().endsWith(".csv") || payload.toLowerCase().endsWith(".txt")) {
 				type = "text/csv";
 			} else
 				type = "application/d4science";
 		}
 
-		StoredData data = new StoredData(name, description, id, provenance, creationDate, operator, computationId, type,payload,config.getGcubeScope());
+		StoredData data = new StoredData(name, description, id, provenance, creationDate, operator, computationId, type,
+				payload, config.getGcubeScope());
 
 		provenanceData.add(data);
 	}
 
-
-
 }

src/main/java/org/gcube/dataanalysis/wps/statisticalmanager/synchserver/mapping/OutputsManager.java

@@ -21,7 +21,7 @@ import org.slf4j.LoggerFactory;
 public class OutputsManager {
 
 	private static Logger LOGGER = LoggerFactory.getLogger(OutputsManager.class);
-	
+
 	private AlgorithmConfiguration config;
 
 	private List<File> generatedFiles = new ArrayList<File>();
@@ -29,7 +29,7 @@ public class OutputsManager {
 	private IClient storageclient;
 	private String computationsession;
 	private List<StoredData> provenanceData = new ArrayList<StoredData>();
-	
+
 	public List<StoredData> getProvenanceData() {
 		return provenanceData;
 	}
@@ -37,7 +37,7 @@ public class OutputsManager {
 	public List<File> getGeneratedData() {
 		return generatedFiles;
 	}
-	
+
 	public List<File> getGeneratedFiles() {
 		return generatedFiles;
 	}
@@ -46,12 +46,13 @@ public class OutputsManager {
 		return generatedTables;
 	}
 
-	public OutputsManager(AlgorithmConfiguration config,String computationsession) {
+	public OutputsManager(AlgorithmConfiguration config, String computationsession) {
 		this.config = config;
-		this.computationsession=computationsession;
+		this.computationsession = computationsession;
 	}
 
-	public LinkedHashMap<String, Object> createOutput(StatisticalType prioroutput, StatisticalType posterioroutput) throws Exception {
+	public LinkedHashMap<String, Object> createOutput(StatisticalType prioroutput, StatisticalType posterioroutput)
+			throws Exception {
 
 		LinkedHashMap<String, Object> outputs = new LinkedHashMap<String, Object>();
 
@@ -66,10 +67,10 @@ public class OutputsManager {
 		StatisticalTypeToWPSType postconverter = new StatisticalTypeToWPSType();
 		postconverter.convert2WPSType(posterioroutput, false, config);
 		generatedFiles.addAll(postconverter.getGeneratedFiles());
-		LOGGER.debug("Generated Files "+generatedFiles);
+		LOGGER.debug("Generated Files " + generatedFiles);
 		generatedTables.addAll(postconverter.getGeneratedTables());
-		LOGGER.debug("Generated Tables "+generatedFiles);
-		
+		LOGGER.debug("Generated Tables " + generatedFiles);
+
 		LinkedHashMap<String, IOWPSInformation> postOutput = postconverter.outputSet;
 
 		LinkedHashMap<String, IOWPSInformation> ndoutput = new LinkedHashMap<String, IOWPSInformation>();
@@ -102,21 +103,23 @@ public class OutputsManager {
 				if (ConfigurationManager.useStorage()) {
 					if (postInfo.getLocalMachineContent() != null) {
 						// return the url from storage manager
-						String storageurl = uploadFileOnStorage(postInfo.getLocalMachineContent(), postInfo.getMimetype());
+						String storageurl = uploadFileOnStorage(postInfo.getLocalMachineContent(),
+								postInfo.getMimetype());
 						postInfo.setContent(storageurl);
 					}
 				}
 				/*
-				else if (postInfo.getLocalMachineContent() != null) {
-					String url = "<wps:Reference mimeType=\""+postInfo.getMimetype()+"\" xlink:href=\""+postInfo.getContent()+"\" method=\"GET\"/>";					
-					LOGGER.debug("Reference URL: " + url);
-					outputs.put(okey, url);
-				}
-				else*/ 
+				 * else if (postInfo.getLocalMachineContent() != null) { String
+				 * url = "<wps:Reference mimeType=\""+postInfo.getMimetype()
+				 * +"\" xlink:href=\""+postInfo.getContent()
+				 * +"\" method=\"GET\"/>"; LOGGER.debug("Reference URL: " +
+				 * url); outputs.put(okey, url); } else
+				 */
 				if (info != null) {
 					LOGGER.debug("Found a corresponding output: " + okey);
 					outputs.put(okey, postInfo.getContent());
-					//add link to the file also among the non deterministic output
+					// add link to the file also among the non deterministic
+					// output
 					if (postInfo.getLocalMachineContent() != null) {
 						ndoutput.put(okey, postInfo);
 					}
@@ -129,23 +132,23 @@ public class OutputsManager {
 
 			System.gc();
 		}
-		
+
 		XmlObject ndxml = generateNonDeterministicOutput(ndoutput);
 		outputs.put("non_deterministic_output", ndxml);
-		
-		//safety check for declared output, i.e. a priori output
-		for (String pkey:priorOutput.keySet()){
-			if (outputs.get(pkey)==null){
-				LOGGER.debug("Safety check: adding empty string for " + pkey+ " of type "+priorOutput.get(pkey).getClassname());
+
+		// safety check for declared output, i.e. a priori output
+		for (String pkey : priorOutput.keySet()) {
+			if (outputs.get(pkey) == null) {
+				LOGGER.debug("Safety check: adding empty string for " + pkey + " of type "
+						+ priorOutput.get(pkey).getClassname());
 				outputs.put(pkey, "");
 			}
 		}
-		
+		LOGGER.debug("OutputsManager outputs " + outputs);
 		return outputs;
 	}
 
-	
-	private void saveProvenanceData(IOWPSInformation info){
+	private void saveProvenanceData(IOWPSInformation info) {
 		String name = info.getName();
 		String id = info.getName();
 		DataProvenance provenance = DataProvenance.COMPUTED;
@@ -153,59 +156,97 @@ public class OutputsManager {
 		String operator = config.getAgent();
 		String computationId = computationsession;
 		String type = info.getMimetype();
-/*		if (info.getLocalMachineContent() != null) {
-			type = StoredType.DATA;
-		}
-		*/
+		/*
+		 * if (info.getLocalMachineContent() != null) { type = StoredType.DATA;
+		 * }
+		 */
 		String payload = info.getContent();
-		
-		StoredData data = new StoredData(name, info.getAbstractStr(),id, provenance, creationDate, operator, computationId, type,payload,config.getGcubeScope());
-		
+
+		StoredData data = new StoredData(name, info.getAbstractStr(), id, provenance, creationDate, operator,
+				computationId, type, payload, config.getGcubeScope());
+
 		provenanceData.add(data);
 	}
-	
+
 	private void prepareForStoring() {
 		LOGGER.debug("Preparing storage client");
-		//String scope = config.getGcubeScope();
-		//ScopeProvider.instance.set(scope);
+		// String scope = config.getGcubeScope();
+		// ScopeProvider.instance.set(scope);
 		String serviceClass = "WPS";
 		String serviceName = "wps.synch";
 		String owner = config.getParam(ConfigurationManager.serviceUserNameParameterVariable);
-		storageclient = new StorageClient(serviceClass, serviceName, owner, AccessType.SHARED, MemoryType.VOLATILE).getClient();
+		storageclient = new StorageClient(serviceClass, serviceName, owner, AccessType.SHARED, MemoryType.VOLATILE)
+				.getClient();
 		LOGGER.debug("Storage client ready");
 	}
-	
-	
+
 	private String uploadFileOnStorage(String localfile, String mimetype) throws Exception {
 		LOGGER.debug("Storing->Start uploading on storage the following file: " + localfile);
 		File localFile = new File(localfile);
-		String remotef = "/wps_synch_output/" +config.getAgent()+"/"+computationsession+"/"+ localFile.getName();
-		storageclient.put(true).LFile(localfile).RFile(remotef);
-		
-		String url = storageclient.getHttpUrl().RFile(remotef);
-		
+		String remotef = "/wps_synch_output/" + config.getAgent() + "/" + computationsession + "/"
+				+ localFile.getName();
+		String contentType=retrieveContentType(localfile);
+		LOGGER.debug("Retrieved Content-Type: "+contentType);
+		if(contentType==null||contentType.isEmpty()){
+			storageclient.put(true).LFile(localfile).RFile(remotef);
+		} else {
+			storageclient.put(true,contentType).LFile(localfile).RFile(remotef);
+		}
+		String url = storageclient.getHttpsUrl().RFile(remotef);
+
 		/*
-		if (config.getGcubeScope().startsWith("/gcube"))
-			url = "http://data-d.d4science.org/uri-resolver/smp?smp-uri=" + url + "&fileName=" + localFile.getName() + "&contentType=" + mimetype;
-		else
-			url = "http://data.d4science.org/uri-resolver/smp?smp-uri=" + url+ "&fileName=" + localFile.getName() + "&contentType=" + mimetype;
-			*/
+		 * if (config.getGcubeScope().startsWith("/gcube")) url =
+		 * "http://data-d.d4science.org/uri-resolver/smp?smp-uri=" + url +
+		 * "&fileName=" + localFile.getName() + "&contentType=" + mimetype; else
+		 * url = "http://data.d4science.org/uri-resolver/smp?smp-uri=" + url+
+		 * "&fileName=" + localFile.getName() + "&contentType=" + mimetype;
+		 */
 		LOGGER.info("Storing->Uploading finished - URL: " + url);
 		return url;
 
 	}
-	
+
+	private String retrieveContentType(String fileName) {
+		String contentType=null;
+		if (fileName != null && !fileName.isEmpty()) {
+			String fileNameLowerCase = fileName.toLowerCase();
+			if (fileNameLowerCase.endsWith(".html") || fileNameLowerCase.endsWith(".htm")) {
+				contentType="text/html";
+			} else {
+				if (fileNameLowerCase.endsWith(".pdf")) {
+					contentType="application/pdf";
+				} else {
+					if (fileNameLowerCase.endsWith(".log") || fileNameLowerCase.endsWith(".txt")) {
+						contentType="text/plain";
+					} else {
+						if (fileNameLowerCase.endsWith(".json")) {
+							contentType="application/json";
+						} else {
+						}
+					}
+				}
+			}
+		}
+		return contentType;
+	}
+
 	public String cleanTagString(String tag) {
 		return tag.replace(" ", "_").replaceAll("[\\]\\[!\"#$%&'()*+,\\./:;<=>?@\\^`{|}~-]", "");
 	}
 
-	public XmlObject generateNonDeterministicOutputPlain(LinkedHashMap<String, IOWPSInformation> ndoutput) throws Exception {
-		String XMLString = "<gml:featureMember xmlns:gml=\"http://www.opengis.net/gml\" xmlns:d4science=\"http://www.d4science.org\">\n" + "	<d4science:output fid=\"outputcollection\">\n";
+	public XmlObject generateNonDeterministicOutputPlain(LinkedHashMap<String, IOWPSInformation> ndoutput)
+			throws Exception {
+		String XMLString = "<gml:featureMember xmlns:gml=\"http://www.opengis.net/gml\" xmlns:d4science=\"http://www.d4science.org\">\n"
+				+ "	<d4science:output fid=\"outputcollection\">\n";
 		for (String key : ndoutput.keySet()) {
 			IOWPSInformation info = ndoutput.get(key);
 			String payload = info.getContent();
 			String mimetype = info.getMimetype();
-			XMLString += "		<d4science:k_" + cleanTagString(key) + ">" + "			<d4science:Data><![CDATA[" + payload + "]]></d4science:Data>\n" + "			<d4science:Description><![CDATA[" + (info.getAbstractStr() != null ? info.getAbstractStr() : "") + "]]></d4science:Description>\n" + "			<d4science:MimeType>" + mimetype + "</d4science:MimeType>\n" + "		</d4science:k_" + cleanTagString(key) + ">\n";
+			XMLString += "		<d4science:k_" + cleanTagString(key) + ">" + "			<d4science:Data><![CDATA["
+					+ payload + "]]></d4science:Data>\n" + "			<d4science:Description><![CDATA["
+					+ (info.getAbstractStr() != null ? info.getAbstractStr() : "") + "]]></d4science:Description>\n"
+					+ "			<d4science:MimeType>" + mimetype + "</d4science:MimeType>\n" + "		</d4science:k_"
+					+ cleanTagString(key) + ">\n";
 		}
 		XMLString += "	</d4science:output>\n" + "</gml:featureMember>\n";
 
@@ -219,16 +260,21 @@ public class OutputsManager {
 		return xmlData;
 	}
 
-	public XmlObject generateNonDeterministicOutputCollection(LinkedHashMap<String, IOWPSInformation> ndoutput) throws Exception {
-		String XMLString = "<ogr:FeatureCollection xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" xsi:schemaLocation=\"http://ogr.maptools.org/ result_8751.xsd\" xmlns:ogr=\"http://ogr.maptools.org/\" xmlns:gml=\"http://www.opengis.net/gml\" xmlns:d4science=\"http://www.d4science.org\">" +
-				"\n<gml:featureMember>\n" + " <ogr:Result fid=\"F0\">\n" +
-						"	<d4science:output fid=\"outputcollection\">\n";
-		
+	public XmlObject generateNonDeterministicOutputCollection(LinkedHashMap<String, IOWPSInformation> ndoutput)
+			throws Exception {
+		String XMLString = "<ogr:FeatureCollection xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" xsi:schemaLocation=\"http://ogr.maptools.org/ result_8751.xsd\" xmlns:ogr=\"http://ogr.maptools.org/\" xmlns:gml=\"http://www.opengis.net/gml\" xmlns:d4science=\"http://www.d4science.org\">"
+				+ "\n<gml:featureMember>\n" + " <ogr:Result fid=\"F0\">\n"
+				+ "	<d4science:output fid=\"outputcollection\">\n";
+
 		for (String key : ndoutput.keySet()) {
 			IOWPSInformation info = ndoutput.get(key);
 			String payload = info.getContent();
 			String mimetype = info.getMimetype();
-			XMLString += "		<d4science:k_" + cleanTagString(key) + ">" + "			<d4science:Data><![CDATA[" + payload + "]]></d4science:Data>\n" + "			<d4science:Description><![CDATA[" + (info.getAbstractStr() != null ? info.getAbstractStr() : "") + "]]></d4science:Description>\n" + "			<d4science:MimeType>" + mimetype + "</d4science:MimeType>\n" + "		</d4science:k_" + cleanTagString(key) + ">\n";
+			XMLString += "		<d4science:k_" + cleanTagString(key) + ">" + "			<d4science:Data><![CDATA["
+					+ payload + "]]></d4science:Data>\n" + "			<d4science:Description><![CDATA["
+					+ (info.getAbstractStr() != null ? info.getAbstractStr() : "") + "]]></d4science:Description>\n"
+					+ "			<d4science:MimeType>" + mimetype + "</d4science:MimeType>\n" + "		</d4science:k_"
+					+ cleanTagString(key) + ">\n";
 		}
 		XMLString += "	</d4science:output>\n" + "  </ogr:Result>\n</gml:featureMember>\n</ogr:FeatureCollection>";
 
@@ -241,40 +287,46 @@ public class OutputsManager {
 
 		return xmlData;
 	}
-	
+
 	public XmlObject generateNonDeterministicOutput(LinkedHashMap<String, IOWPSInformation> ndoutput) throws Exception {
-		
-		if (ndoutput.size()==0)
+
+		if (ndoutput.size() == 0)
 			return null;
-		
-		String XMLString = "<ogr:FeatureCollection xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" xsi:schemaLocation=\"http://ogr.maptools.org/ result_8751.xsd\" xmlns:ogr=\"http://ogr.maptools.org/\" xmlns:gml=\"http://www.opengis.net/gml\" xmlns:d4science=\"http://www.d4science.org\">" +
-				"\n<gml:featureMember>\n";
+
+		String XMLString = "<ogr:FeatureCollection xmlns:xsi=\"http://www.w3.org/2001/XMLSchema-instance\" xsi:schemaLocation=\"http://ogr.maptools.org/ result_8751.xsd\" xmlns:ogr=\"http://ogr.maptools.org/\" xmlns:gml=\"http://www.opengis.net/gml\" xmlns:d4science=\"http://www.d4science.org\">"
+				+ "\n<gml:featureMember>\n";
 		int count = 0;
 		for (String key : ndoutput.keySet()) {
 			IOWPSInformation info = ndoutput.get(key);
 			String payload = info.getContent();
 			String mimetype = info.getMimetype();
 			String abstractStr = info.getAbstractStr();
-			
-			LOGGER.debug("IOWPS Information: " + "name "+info.getName()+","
-					+"abstr "+info.getAbstractStr()+","
-					+"content "+info.getContent()+","
-					+"def "+info.getDefaultVal()+",");
-			
-			if ((abstractStr==null || abstractStr.trim().length()==0) && (payload!= null && payload.trim().length()>0))
+
+			LOGGER.debug("IOWPS Information [name=" + info.getName() + ", abstr=" + info.getAbstractStr() + ", content="
+					+ info.getContent() + ", def=" + info.getDefaultVal() + "]");
+
+			if ((abstractStr == null || abstractStr.trim().length() == 0)
+					&& (payload != null && payload.trim().length() > 0))
 				abstractStr = info.getName();
 			else if (abstractStr == null)
 				abstractStr = "";
-			
-			//geospatialized
-//			XMLString += "		<ogr:Result fid=\"F" + count+ "\">" + "<ogr:geometryProperty><gml:Point><gml:coordinates>0,0</gml:coordinates></gml:Point></ogr:geometryProperty>"+ "			<d4science:Data><![CDATA[" + payload + "]]></d4science:Data>\n" + "			<d4science:Description><![CDATA[" + (info.getAbstractStr() != null ? info.getAbstractStr() : "") + "]]></d4science:Description>\n" + "			<d4science:MimeType>" + mimetype + "</d4science:MimeType>\n" + "		</ogr:Result>\n";
-			XMLString += "		<ogr:Result fid=\"F" + count+ "\">" + "			<d4science:Data><![CDATA[" + payload + "]]></d4science:Data>\n" + "			<d4science:Description><![CDATA[" + abstractStr + "]]></d4science:Description>\n" + "			<d4science:MimeType>" + mimetype + "</d4science:MimeType>\n" + "		</ogr:Result>\n";
+
+			// geospatialized
+			// XMLString += " <ogr:Result fid=\"F" + count+ "\">" +
+			// "<ogr:geometryProperty><gml:Point><gml:coordinates>0,0</gml:coordinates></gml:Point></ogr:geometryProperty>"+
+			// " <d4science:Data><![CDATA[" + payload + "]]></d4science:Data>\n"
+			// + " <d4science:Description><![CDATA[" + (info.getAbstractStr() !=
+			// null ? info.getAbstractStr() : "") +
+			// "]]></d4science:Description>\n" + " <d4science:MimeType>" +
+			// mimetype + "</d4science:MimeType>\n" + " </ogr:Result>\n";
+			XMLString += "		<ogr:Result fid=\"F" + count + "\">" + "			<d4science:Data><![CDATA[" + payload
+					+ "]]></d4science:Data>\n" + "			<d4science:Description><![CDATA[" + abstractStr
+					+ "]]></d4science:Description>\n" + "			<d4science:MimeType>" + mimetype
+					+ "</d4science:MimeType>\n" + "		</ogr:Result>\n";
 			count++;
 		}
 		XMLString += "	</gml:featureMember>\n</ogr:FeatureCollection>";
-		
-		
-		
+
 		LOGGER.debug("Non deterministic output: " + XMLString);
 
 		XmlObject xmlData = XmlObject.Factory.newInstance();
@@ -284,12 +336,12 @@ public class OutputsManager {
 
 		return xmlData;
 	}
-	
-	public void shutdown(){
-		try{
-		storageclient.close();
-		}catch(Exception e){
-			
+
+	public void shutdown() {
+		try {
+			storageclient.close();
+		} catch (Exception e) {
+
 		}
 	}
 }

src/main/java/org/gcube/dataanalysis/wps/statisticalmanager/synchserver/mapping/TableTemplatesMapper.java

@@ -34,16 +34,16 @@ public class TableTemplatesMapper {
 
 	public void linksMapping(){
 		linksMap = new HashMap<String, String>();
-		linksMap.put(TableTemplates.HSPEN.name(), "(HSPEN) http://goo.gl/4zDiAK");
-		linksMap.put(TableTemplates.HCAF.name(), "(HCAF) http://goo.gl/SZG9uM");
-		linksMap.put(TableTemplates.HSPEC.name(),"(HSPEC) http://goo.gl/OvKa1h");
-		linksMap.put(TableTemplates.OCCURRENCE_AQUAMAPS.name(), "(OCCURRENCE_AQUAMAPS) http://goo.gl/vHil5T");
-		linksMap.put(TableTemplates.OCCURRENCE_SPECIES.name(), "(OCCURRENCE_SPECIES) http://goo.gl/4ExuR5");
-		linksMap.put(TableTemplates.MINMAXLAT.name(), "(MINMAXLAT) http://goo.gl/cRzwgN");
-		linksMap.put(TableTemplates.TRAININGSET.name(), "(TRAININGSET) http://goo.gl/Br44UQ");
-		linksMap.put(TableTemplates.TESTSET.name(), "(TESTSET) http://goo.gl/LZHNXt");
-		linksMap.put(TableTemplates.CLUSTER.name(), "(CLUSTER) http://goo.gl/PnKhhb");
-		linksMap.put(TableTemplates.TIMESERIES.name(), "(TIMESERIES) http://goo.gl/DoW6fg");
+		linksMap.put(TableTemplates.HSPEN.name(), "(HSPEN) https://data.d4science.net/kLeQ");
+		linksMap.put(TableTemplates.HCAF.name(), "(HCAF) https://data.d4science.net/AhwE");
+		linksMap.put(TableTemplates.HSPEC.name(),"(HSPEC) https://data.d4science.net/TNCR");
+		linksMap.put(TableTemplates.OCCURRENCE_AQUAMAPS.name(), "(OCCURRENCE_AQUAMAPS) https://data.d4science.net/Un3H");
+		linksMap.put(TableTemplates.OCCURRENCE_SPECIES.name(), "(OCCURRENCE_SPECIES) https://data.d4science.net/wKRW");
+		linksMap.put(TableTemplates.MINMAXLAT.name(), "(MINMAXLAT) https://data.d4science.net/fPFQ");
+		linksMap.put(TableTemplates.TRAININGSET.name(), "(TRAININGSET) https://data.d4science.net/NgvU");
+		linksMap.put(TableTemplates.TESTSET.name(), "(TESTSET) https://data.d4science.net/EpjE");
+		linksMap.put(TableTemplates.CLUSTER.name(), "(CLUSTER) https://data.d4science.net/XN7z");
+		linksMap.put(TableTemplates.TIMESERIES.name(), "(TIMESERIES) https://data.d4science.net/5g4F");
 		linksMap.put(TableTemplates.GENERIC.name(), "(GENERIC) A generic comma separated csv file in UTF-8 encoding");
 	}	
 	

src/main/java/org/gcube/dataanalysis/wps/statisticalmanager/synchserver/mapping/TokenManager.java

@@ -2,59 +2,122 @@ package org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mapping;
 
 import static org.gcube.common.authorization.client.Constants.authorizationService;
 
+import java.io.BufferedReader;
+import java.io.IOException;
+import java.io.InputStream;
+import java.io.InputStreamReader;
+import java.net.HttpURLConnection;
+import java.net.URL;
+
+import javax.ws.rs.core.Response;
+
 import org.gcube.common.authorization.library.AuthorizationEntry;
+import org.gcube.common.authorization.library.provider.AccessTokenProvider;
 import org.gcube.common.authorization.library.provider.AuthorizationProvider;
 import org.gcube.common.authorization.library.provider.SecurityTokenProvider;
+import org.gcube.common.scope.api.ScopeProvider;
+import org.gcube.dataanalysis.wps.statisticalmanager.synchserver.is.InformationSystemUtils;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 
 public class TokenManager {
 
-	private static final Logger LOGGER= LoggerFactory.getLogger(TokenManager.class);
+	private static final Logger LOGGER = LoggerFactory.getLogger(TokenManager.class);
 
 	String username;
 	String scope;
 	String token;
 	String tokenQualifier;
-	
-	public String getScope(){
+
+	public String getScope() {
 		return scope;
 	}
 
-	public String getUserName(){
+	public String getUserName() {
 		return username;
 	}
 
-	public String getToken(){
+	public String getToken() {
 		return token;
 	}
-	
+
 	public String getTokenQualifier() {
 		return tokenQualifier;
 	}
 
 	public void getCredentials() {
-		try{
-			LOGGER.debug("Retrieving token credentials");
-			//get username from SmartGears
+		try {
+			LOGGER.info("Retrieving token credentials");
+			// get username from SmartGears
 			username = AuthorizationProvider.instance.get().getClient().getId();
 			token = SecurityTokenProvider.instance.get();
+			if (token == null || token.isEmpty()) {
+				String jwtToken = AccessTokenProvider.instance.get();
+				scope = ScopeProvider.instance.get();
+				token = getGcubeTokenFromUriResolver(jwtToken, scope);
+			}
 			AuthorizationEntry entry = authorizationService().get(token);
 			scope = entry.getContext();
 			tokenQualifier = entry.getQualifier();
-
-		}catch(Exception e){
-			LOGGER.error("Error Retrieving token credentials ",e);
+		} catch (Exception e) {
+			LOGGER.error("Error Retrieving token credentials: "+e.getLocalizedMessage(),e);
 			scope = null;
-			username= null;
+			username = null;
 
 		}
-		if ((scope==null || username==null) && ConfigurationManager.isSimulationMode()){
+		if ((scope == null || username == null) && ConfigurationManager.isSimulationMode()) {
 			scope = ConfigurationManager.defaultScope;
 			username = ConfigurationManager.defaultUsername;
 		}
-		LOGGER.debug("Retrieved scope: {} Username: {} Token {} SIMULATION MODE: {} ",scope, username, token, ConfigurationManager.isSimulationMode());
+		LOGGER.info("Retrieved scope: {} Username: {} Token {} SIMULATION MODE: {} ", scope, username, token,
+				ConfigurationManager.isSimulationMode());
 
 	}
 
+	public String getGcubeTokenFromUriResolver(String jwtToken, String scope) throws Exception {
+		String gcubeToken = null;
+		String uriResolverOatURL = InformationSystemUtils.retrieveUriResolverOat(scope);
+		try {
+			LOGGER.info("Create Request: "+ uriResolverOatURL);
+			URL urlObj = new URL(uriResolverOatURL);
+			HttpURLConnection connection = (HttpURLConnection) urlObj.openConnection();
+			connection.setRequestMethod("GET");
+			connection.setRequestProperty("Authorization", "Bearer " + jwtToken);
+			connection.setDoOutput(true);
+			try (AutoCloseable conc = () -> connection.disconnect()) {
+				int responseCode = connection.getResponseCode();
+				LOGGER.info("Response Code: " + responseCode);
+				
+				if (Response.Status.fromStatusCode(responseCode).compareTo(Response.Status.OK) == 0) {
+					try (InputStream ins = connection.getInputStream();
+							BufferedReader in = new BufferedReader(new InputStreamReader(ins))) {
+						String inputLine = null;
+						while ((inputLine = in.readLine()) != null) {
+							break;
+						}
+						gcubeToken = inputLine;
+					}
+				} else {
+					String error = "Invalid Response Code retrieving GCube Token from Uri Resolver: " + responseCode;
+					LOGGER.error(error);
+					try (InputStream ins = connection.getErrorStream();
+							BufferedReader in = new BufferedReader(new InputStreamReader(ins))) {
+						String inputLine = null;
+						while ((inputLine = in.readLine()) != null) {
+							LOGGER.error(inputLine);
+						}
+					}
+					throw new Exception(error);
+				}
+			}
+
+		} catch (IOException e) {
+			LOGGER.error("Error retrieving GcubeToken from Uri Resolver: "+e.getLocalizedMessage());
+			e.printStackTrace();
+			throw e;
+		}
+		LOGGER.info("Retrieved GcubeToken: "+gcubeToken);
+		return gcubeToken;
+	}
+
 }

src/main/java/org/gcube/dataanalysis/wps/statisticalmanager/synchserver/mapping/dataspace/DataspaceManager.java

@@ -13,16 +13,15 @@ import java.util.List;
 import java.util.Map;
 import java.util.UUID;
 
-import org.gcube.common.homelibrary.home.Home;
-import org.gcube.common.homelibrary.home.HomeLibrary;
-import org.gcube.common.homelibrary.home.HomeManager;
-import org.gcube.common.homelibrary.home.HomeManagerFactory;
-import org.gcube.common.homelibrary.home.User;
-import org.gcube.common.homelibrary.home.workspace.Workspace;
-import org.gcube.common.homelibrary.home.workspace.WorkspaceFolder;
-import org.gcube.common.homelibrary.home.workspace.WorkspaceItem;
-import org.gcube.common.homelibrary.home.workspace.folder.FolderItem;
-import org.gcube.common.homelibrary.util.WorkspaceUtil;
+import org.gcube.common.authorization.library.provider.AuthorizationProvider;
+import org.gcube.common.storagehub.client.dsl.FileContainer;
+import org.gcube.common.storagehub.client.dsl.FolderContainer;
+import org.gcube.common.storagehub.client.dsl.ItemContainer;
+import org.gcube.common.storagehub.client.dsl.StorageHubClient;
+import org.gcube.common.storagehub.model.Metadata;
+import org.gcube.common.storagehub.model.exceptions.ItemLockedException;
+import org.gcube.common.storagehub.model.items.GCubeItem;
+import org.gcube.common.storagehub.model.items.Item;
 import org.gcube.contentmanagement.lexicalmatcher.utils.FileTools;
 import org.gcube.dataanalysis.ecoengine.configuration.AlgorithmConfiguration;
 import org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mapping.AbstractEcologicalEngineMapper;
@@ -64,12 +63,20 @@ public class DataspaceManager implements Runnable {
 	public static String operator = "operator_name";
 	public static String payload = "payload";
 
-	public DataspaceManager(AlgorithmConfiguration config, ComputationData computation, List<StoredData> inputData, List<StoredData> outputData, List<File> generatedFiles) {
+	private String statusComputationName;
+	private static final String STATUS_POSTFIX = "-STATUS";
+
+	public DataspaceManager(AlgorithmConfiguration config, ComputationData computation, List<StoredData> inputData,
+			List<StoredData> outputData, List<File> generatedFiles) {
 		this.config = config;
 		this.computation = computation;
 		this.inputData = inputData;
 		this.outputData = outputData;
 		this.generatedFiles = generatedFiles;
+		this.statusComputationName = this.computation.id + STATUS_POSTFIX;
+
+		LOGGER.debug("DataspaceManager [config=" + config + ", computation=" + computation + ", inputData=" + inputData
+				+ ", outputData=" + outputData + ", generatedFiles=" + generatedFiles + "]");
 	}
 
 	public void run() {
@@ -88,78 +95,102 @@ public class DataspaceManager implements Runnable {
 
 	}
 
-	public void createFoldersNetwork(Workspace ws, WorkspaceFolder root) throws Exception {
+	public FolderContainer createFoldersNetwork() throws Exception {
 
 		LOGGER.debug("Dataspace->Creating folders for DataMiner");
 
-		// manage folders: create the folders network
-		if (!ws.exists(dataminerFolder, root.getId())) {
-			LOGGER.debug("Dataspace->Creating DataMiner main folder");
-			root.createFolder(dataminerFolder, "A folder collecting DataMiner experiments data and computation information");
-			((WorkspaceFolder) root.find(dataminerFolder)).setSystemFolder(true);
-		}
-		WorkspaceFolder dataminerFolderWS = (WorkspaceFolder) root.find(dataminerFolder);
+		StorageHubClient shc = new StorageHubClient();
 
-		if (!ws.exists(importedDataFolder, dataminerFolderWS.getId())) {
+		FolderContainer root = shc.getWSRoot();
+
+		List<ItemContainer<? extends Item>> dataminerItems = root.findByName(dataminerFolder).getContainers();
+
+		FolderContainer dataminerFolderContainer;
+
+		// manage folders: create the folders network
+		if (dataminerItems.isEmpty()) {
+			LOGGER.debug("Dataspace->Creating DataMiner main folder");
+			dataminerFolderContainer = root.newFolder(dataminerFolder,
+					"A folder collecting DataMiner experiments data and computation information");
+			// ((WorkspaceFolder)
+			// root.find(dataminerFolder)).setSystemFolder(true);
+		} else if (dataminerItems.size() > 1)
+			throw new Exception("found more than one dataminer folder (impossible!!!)");
+		else
+			dataminerFolderContainer = (FolderContainer) dataminerItems.get(0);
+
+		if (dataminerFolderContainer.findByName(importedDataFolder).getContainers().isEmpty()) {
 			LOGGER.debug("Dataspace->Creating DataMiner imported data folder");
-			dataminerFolderWS.createFolder(importedDataFolder, "A folder collecting DataMiner imported data");
+			dataminerFolderContainer.newFolder(importedDataFolder, "A folder collecting DataMiner imported data");
 		}
-		if (!ws.exists(computedDataFolder, dataminerFolderWS.getId())) {
+
+		if (dataminerFolderContainer.findByName(computedDataFolder).getContainers().isEmpty()) {
 			LOGGER.debug("Dataspace->Creating DataMiner computed data folder");
-			dataminerFolderWS.createFolder(computedDataFolder, "A folder collecting DataMiner computed data");
+			dataminerFolderContainer.newFolder(computedDataFolder, "A folder collecting DataMiner computed data");
 		}
-		if (!ws.exists(computationsFolder, dataminerFolderWS.getId())) {
+		if (dataminerFolderContainer.findByName(computationsFolder).getContainers().isEmpty()) {
 			LOGGER.debug("Dataspace->Creating DataMiner computations folder");
-			dataminerFolderWS.createFolder(computationsFolder, "A folder collecting DataMiner computations information");
+			dataminerFolderContainer.newFolder(computationsFolder,
+					"A folder collecting DataMiner computations information");
 		}
+
+		return dataminerFolderContainer;
 	}
-	public String uploadData(StoredData data, WorkspaceFolder wsFolder) throws Exception {
-		return uploadData(data, wsFolder, true);
+
+	public String uploadData(StoredData data, FolderContainer destinationFolder) throws Exception {
+		return uploadData(data, destinationFolder, true);
 	}
-	public String uploadData(StoredData data, WorkspaceFolder wsFolder, boolean changename) throws Exception {
-		LOGGER.debug("Dataspace->Analysing " + data);
-		// String filenameonwsString = WorkspaceUtil.getUniqueName(data.name, wsFolder);
-		String filenameonwsString = data.name ;
+
+	public String uploadData(StoredData data, FolderContainer destinationFolder, boolean changename) throws Exception {
+		LOGGER.debug("Dataspace->Uploaddata:"
+				+ " [data={},destinationFolder={}, changename={}] ", data, destinationFolder,
+				changename);
+		// String filenameonwsString = WorkspaceUtil.getUniqueName(data.name,
+		// wsFolder);
+		String filenameonwsString = data.name;
 		if (changename)
-			filenameonwsString = data.name + "_[" + data.computationId + "]"+getExtension(data.payload, data.type);// ("_"+UUID.randomUUID()).replace("-", "");
-	
+			filenameonwsString = String.format("%s_(%s)%s", data.name, data.computationId, getExtension(data.payload));
+
 		InputStream in = null;
 		String url = "";
 		try {
-			long size = 0;
-			if (data.type.equals("text/csv")||data.type.equals("application/d4science")||data.type.equals("image/png")) {
+			// long size = 0;
+			if (data.type.equals("text/csv") || data.type.equals("application/d4science")
+					|| data.type.equals("image/png")) {
 
 				if (new File(data.payload).exists() || !data.payload.startsWith("http")) {
-					LOGGER.debug("Dataspace->Uploading file " + data.payload);
+					LOGGER.debug("Dataspace->Uploading file {}", data.payload);
 					in = new FileInputStream(new File(data.payload));
-					size = new File(data.payload).length();
+					// size = new File(data.payload).length();
 				} else {
-					LOGGER.debug("Dataspace->Uploading via URL " + data.payload);
+					LOGGER.debug("Dataspace->Uploading via URL {}", data.payload);
 					int tries = 10;
-					for (int i=0;i<tries;i++){
+					for (int i = 0; i < tries; i++) {
 						try {
 							URL urlc = new URL(data.payload);
+							url = urlc.toString();
 							HttpURLConnection urlConnection = (HttpURLConnection) urlc.openConnection();
 							urlConnection.setConnectTimeout(10000);
 							urlConnection.setReadTimeout(10000);
 							in = new BufferedInputStream(urlConnection.getInputStream());
-						}catch(Exception ee){
-							LOGGER.warn("Dataspace->Retrying connection to {} number {} ",data.payload,(i+1),ee);
-							in =null;
+						} catch (Exception ee) {
+							LOGGER.warn("Dataspace->Retrying connection to {} number {} ", data.payload, (i + 1), ee);
+							in = null;
 						}
-						if (in!=null)
+						if (in != null)
 							break;
 						else
 							Thread.sleep(10000);
 					}
 
 				}
-				if (in==null)
-					throw new Exception("Impossible to open stream from "+data.payload);
+				if (in == null)
+					throw new Exception("Impossible to open stream from " + data.payload);
 
-				// LOGGER.debug("Dataspace->final file name on ws " + data.name+" description "+data.description);
-				LOGGER.debug("Dataspace->WS OP saving the following file on the WS " + filenameonwsString);
-				LinkedHashMap<String, String> properties = new LinkedHashMap<String, String>();
+				// LOGGER.debug("Dataspace->final file name on ws " +
+				// data.name+" description "+data.description);
+				LOGGER.debug("Dataspace->WS OP saving the following file on the WS: " + filenameonwsString);
+				Map<String, Object> properties = new LinkedHashMap<String, Object>();
 
 				properties.put(computation_id, data.computationId);
 				properties.put(hostname, WPSConfig.getInstance().getWPSConfig().getServer().getHostname());
@@ -172,238 +203,231 @@ public class DataspaceManager implements Runnable {
 				properties.put(data_type, data.type);
 				properties.put(payload, url);
 
-				FolderItem fileItem = WorkspaceUtil.createExternalFile(wsFolder, filenameonwsString, data.description, in,properties,data.type,size);
-				//fileItem.getProperties().addProperties(properties);
-				LOGGER.debug("Dataspace->WS OP file saved on the WS " + filenameonwsString);
+				FileContainer fileContainer = destinationFolder.uploadFile(in, filenameonwsString, data.description);
+				LOGGER.debug("Dataspace->WS OP file uploaded on WS: " + filenameonwsString);
+				Metadata metadata = new Metadata(properties);
+				fileContainer.setMetadata(metadata);
 
-				url = fileItem.getPublicLink(false);
+				LOGGER.debug("Dataspace->WS OP file set metadata: " + metadata);
+
+				url = fileContainer.getPublicLink().toString();
 				LOGGER.debug("Dataspace->WS OP url produced for the file " + url);
 
 				data.payload = url;
 				try {
 					in.close();
 				} catch (Exception e) {
-					LOGGER.debug("Dataspace->Error creating file " + e.getMessage());
-					//LOGGER.debug(e);
+					LOGGER.debug("Dataspace->Error creating file {}", e.getMessage());
+					// LOGGER.debug(e);
 				}
-				LOGGER.debug("Dataspace->File created " + filenameonwsString);
+				LOGGER.debug("Dataspace->File created {}", filenameonwsString);
 			} else {
-				LOGGER.debug("Dataspace->String parameter " + data.payload);
+				LOGGER.debug("Dataspace->String parameter {}", data.payload);
 				url = data.payload;
 			}
 		} catch (Throwable e) {
-			LOGGER.error("Dataspace->Could not retrieve input payload {} ",data.payload,e);
-			//LOGGER.debug(e);
+			LOGGER.error("Dataspace->Could not retrieve input payload {} ", data.payload, e);
+			// LOGGER.debug(e);
 			url = "payload was not made available for this dataset";
 			data.payload = url;
 		}
 		return url;
 	}
 
-	public List<String> uploadInputData(List<StoredData> inputData, WorkspaceFolder dataminerFolder) throws Exception {
-		LOGGER.debug("Dataspace->uploading input data; Number of data: " + inputData.size());
-		WorkspaceItem folderItem = dataminerFolder.find(importedDataFolder);
+	public List<String> uploadInputData(List<StoredData> inputData, FolderContainer dataminerFolder) throws Exception {
+		LOGGER.debug("Dataspace->uploading input data; Number of data: {}", inputData.size());
+		FolderContainer destinationFolder = (FolderContainer) dataminerFolder.findByName(importedDataFolder)
+				.getContainers().get(0);
 		List<String> urls = new ArrayList<String>();
-		if (folderItem != null && folderItem.isFolder()) {
-			WorkspaceFolder destinationFolder = (WorkspaceFolder) folderItem;
-			for (StoredData input : inputData) {
-				WorkspaceItem item = null;
+		for (StoredData input : inputData) {
+			List<ItemContainer<? extends Item>> items = null;
 
-				if (input.type.equals("text/csv")||input.type.equals("application/d4science")||input.type.equals("image/png")) 
-					item = destinationFolder.find(input.name);
+			if (input.type.equals("text/csv") || input.type.equals("application/d4science")
+					|| input.type.equals("image/png"))
+				items = destinationFolder.findByName(input.name).getContainers();
 
-				if (item==null){
-					String url = uploadData(input, destinationFolder,false);
-					LOGGER.debug("Dataspace->returning property "+url);
-					urls.add(url);
-				}
-				else{
-					LOGGER.debug("Dataspace->Input item "+input.name+" is already available in the input folder");
-					String url = item.getPublicLink(false);
-					LOGGER.debug("Dataspace->returning WS url "+url);
-					urls.add(url);
-				}
+			if (items == null || items.isEmpty()) {
+				String url = uploadData(input, destinationFolder, false);
+				LOGGER.debug("Dataspace->returning property {}", url);
+				urls.add(url);
+			} else {
+				FileContainer item = (FileContainer) items.get(0);
+				LOGGER.debug("Dataspace->Input item {} is already available in the input folder", input.name);
+				String url = item.getPublicLink().toString();
+				LOGGER.debug("Dataspace->returning WS url {}", url);
+				urls.add(url);
 			}
-		} else
-			LOGGER.debug("Dataspace->folder is not valid");
+		}
 
 		LOGGER.debug("Dataspace->finished uploading input data");
 		return urls;
 	}
 
-	public List<String> uploadOutputData(List<StoredData> outputData, WorkspaceFolder dataminerFolder) throws Exception {
+	public List<String> uploadOutputData(List<StoredData> outputData, FolderContainer dataminerFolder)
+			throws Exception {
 		LOGGER.debug("Dataspace->uploading output data; Number of data: " + outputData.size());
-		WorkspaceItem folderItem = dataminerFolder.find(computedDataFolder);
+		FolderContainer destinationFolder = (FolderContainer) dataminerFolder.findByName(computedDataFolder)
+				.getContainers().get(0);
 		List<String> urls = new ArrayList<String>();
-		if (folderItem != null && folderItem.isFolder()) {
-			WorkspaceFolder destinationFolder = (WorkspaceFolder) folderItem;
-			for (StoredData output : outputData) {
-				String url = uploadData(output, destinationFolder);
-				urls.add(url);
-			}
-		} else
-			LOGGER.debug("Dataspace->folder is not valid");
+		for (StoredData output : outputData) {
+			String url = uploadData(output, destinationFolder);
+			urls.add(url);
+		}
 		LOGGER.debug("Dataspace->finished uploading output data");
 		return urls;
 	}
 
-	public void uploadComputationData(ComputationData computation, List<StoredData> inputData, List<StoredData> outputData, WorkspaceFolder dataminerFolder, Workspace ws) throws Exception {
+	public void uploadComputationData(ComputationData computation, List<StoredData> inputData,
+			List<StoredData> outputData, FolderContainer dataminerFolder) throws Exception {
 		LOGGER.debug("Dataspace->uploading computation data");
-		WorkspaceItem folderItem = dataminerFolder.find(computationsFolder);
-		if (folderItem != null && folderItem.isFolder()) {
-			// create a folder in here
-			LOGGER.debug("Dataspace->Creating computation folder " + computation.id);
-			WorkspaceFolder cfolder = ((WorkspaceFolder) folderItem);
-			String cfoldername = computation.id;
-			WorkspaceFolder newcomputationFolder = null;
-			try{
-				newcomputationFolder = cfolder.createFolder(cfoldername, computation.operatorDescription);
-			}catch(java.lang.ClassCastException e){
-				LOGGER.debug("Dataspace->concurrency exception - deleting remaining item");
-				deleteRunningComputationData();
-				newcomputationFolder = cfolder.createFolder(cfoldername, computation.operatorDescription);
-			}
-			//String itemType = "COMPUTATION";
-
-			// create IO folders
-			LOGGER.debug("Dataspace->creating IO folders under " + cfoldername);
-			newcomputationFolder.createFolder(importedDataFolder, importedDataFolder);
-			newcomputationFolder.createFolder(computedDataFolder, computedDataFolder);
-
-			// copy IO in those folders
-			LOGGER.debug("Dataspace->*****uploading inputs in IO folder*****");
-			List<String> inputurls = uploadInputData(inputData, newcomputationFolder);
-			LOGGER.debug("Dataspace->*****uploading outputs in IO folder*****");
-			List<String> outputurls = uploadOutputData(outputData, newcomputationFolder);
-
-			LOGGER.debug("Dataspace->*****adding properties to the folder*****");
-
-			LOGGER.debug("Dataspace->creating Folder Properties");
-
-			// write a computation item for the computation
-			LinkedHashMap<String, String> properties = new LinkedHashMap<String, String>();
-			properties.put(computation_id, computation.id);
-
-			properties.put(hostname, WPSConfig.getInstance().getWPSConfig().getServer().getHostname());
-			
-			properties.put(vre, computation.vre);
-
-			properties.put(operator_name, config.getAgent());
-
-			properties.put(operator_id, computation.operatorId);
-
-			properties.put(operator_description, computation.operatorDescription);
-
-			properties.put(start_date, computation.startDate);
-
-			properties.put(end_date, computation.endDate);
-
-			properties.put(status, getStatus(computation.status));
-
-			properties.put(execution_platform, computation.infrastructure);
-
-			int ninput = inputurls.size();
-			int noutput = outputurls.size();
-
-			LOGGER.debug("Dataspace->Adding input properties for " + ninput + " inputs");
-			for (int i = 1; i <= ninput; i++) {
-				StoredData input = inputData.get(i - 1);
-				if (input.payload.contains("|")){
-					String payload = input .payload;
-					LOGGER.debug("Dataspace->Managing complex input "+input.name+" : "+payload);
-					//delete the names that are not useful
-
-					for (StoredData subinput:inputData){
-						if (input.description.equals(subinput.description)){
-							payload = payload.replace(subinput.name,subinput.payload);
-							subinput.name=null;
-						}
-					}
-
-					input.name = null;
-
-					//delete last pipe character
-					if (payload.endsWith("|"))
-						payload = payload.substring(0,payload.length()-1);
-					LOGGER.debug("Dataspace->Complex input after processing "+payload);
-					properties.put("input" + i + "_" + input.description, payload);
-					input.payload=payload;
-
-				}
-			}
-
-			for (int i = 1; i <= ninput; i++) {
-				StoredData input = inputData.get(i - 1);
-				if (input.name!=null){
-					properties.put("input" + i + "_" + input.name, inputurls.get(i - 1));
-
-				}
-			}
-
-			LOGGER.debug("Dataspace->Adding output properties for " + noutput + " outputs");
-			for (int i = 1; i <= noutput; i++) {
-				properties.put("output" + i + "_" + outputData.get(i - 1).name, outputurls.get(i - 1));
-
-			}
-
-			LOGGER.debug("Dataspace->Properties of the folder: " + properties);
-
-			LOGGER.debug("Dataspace->Saving properties to ProvO XML file " + noutput + " outputs");
-
-			/*
-			 * XStream xstream = new XStream(); String xmlproperties = xstream.toXML(properties);
-			 */
-			try {
-				String xmlproperties = ProvOGenerator.toProvO(computation, inputData, outputData);
-
-				File xmltosave = new File(config.getPersistencePath(), "prov_o_" + UUID.randomUUID());
-				FileTools.saveString(xmltosave.getAbsolutePath(), xmlproperties, true, "UTF-8");
-				InputStream sis = new FileInputStream(xmltosave);
-				WorkspaceUtil.createExternalFile(newcomputationFolder, computation.id + ".xml", computation.operatorDescription, sis,null,"text/xml",xmltosave.length());
-				sis.close();
-				xmltosave.delete();
-			} catch (Exception e) {
-				LOGGER.error("Dataspace->Failed creating ProvO XML file ",e);
-			}
-			//List<String> scopes = new ArrayList<String>();
-			//scopes.add(config.getGcubeScope());
-			//ws.createGcubeItem(computation.id, computation.operatorDescription, scopes, computation.user, itemType, properties, newcomputationFolder.getId());
-			newcomputationFolder.getProperties().addProperties(properties);
+		FolderContainer computationContainer = (FolderContainer) dataminerFolder.findByName(computationsFolder)
+				.getContainers().get(0);
+		// create a folder in here
+		LOGGER.debug("Dataspace->Creating computation folder " + computation.id);
+		String cfoldername = computation.id;
+		FolderContainer newcomputationFolder = null;
+		try {
+			newcomputationFolder = computationContainer.newFolder(cfoldername, computation.operatorDescription);
+		} catch (java.lang.ClassCastException e) {
+			LOGGER.debug("Dataspace->concurrency exception - deleting remaining item");
+			deleteRunningComputationData();
+			newcomputationFolder = computationContainer.newFolder(cfoldername, computation.operatorDescription);
 		}
+		// String itemType = "COMPUTATION";
+
+		// create IO folders
+		LOGGER.debug("Dataspace->creating IO folders under " + cfoldername);
+		newcomputationFolder.newFolder(importedDataFolder, importedDataFolder);
+		newcomputationFolder.newFolder(computedDataFolder, computedDataFolder);
+
+		// copy IO in those folders
+		LOGGER.debug("Dataspace->*****uploading inputs in IO folder*****");
+		List<String> inputurls = uploadInputData(inputData, newcomputationFolder);
+		LOGGER.debug("Dataspace->*****uploading outputs in IO folder*****");
+		List<String> outputurls = uploadOutputData(outputData, newcomputationFolder);
+
+		LOGGER.debug("Dataspace->*****adding properties to the folder*****");
+
+		LOGGER.debug("Dataspace->creating Folder Properties");
+
+		// write a computation item for the computation
+		Map<String, Object> properties = new LinkedHashMap<String, Object>();
+		properties.put(computation_id, computation.id);
+
+		properties.put(hostname, WPSConfig.getInstance().getWPSConfig().getServer().getHostname());
+
+		properties.put(vre, computation.vre);
+
+		properties.put(operator_name, config.getAgent());
+
+		properties.put(operator_id, computation.operatorId);
+
+		properties.put(operator_description, computation.operatorDescription);
+
+		properties.put(start_date, computation.startDate);
+
+		properties.put(end_date, computation.endDate);
+
+		properties.put(status, getStatus(computation.status));
+
+		properties.put(execution_platform, computation.infrastructure);
+
+		int ninput = inputurls.size();
+		int noutput = outputurls.size();
+
+		LOGGER.debug("Dataspace->Adding input properties for " + ninput + " inputs");
+		for (int i = 1; i <= ninput; i++) {
+			StoredData input = inputData.get(i - 1);
+			if (input.payload.contains("|")) {
+				String payload = input.payload;
+				LOGGER.debug("Dataspace->Managing complex input {} : {}", input.name, payload);
+				// delete the names that are not useful
+
+				for (StoredData subinput : inputData) {
+					if (input.description.equals(subinput.description)) {
+						payload = payload.replace(subinput.name, subinput.payload);
+						subinput.name = null;
+					}
+				}
+
+				input.name = null;
+
+				// delete last pipe character
+				if (payload.endsWith("|"))
+					payload = payload.substring(0, payload.length() - 1);
+				LOGGER.debug("Dataspace->Complex input after processing " + payload);
+				properties.put("input" + i + "_" + input.description, payload);
+				input.payload = payload;
+
+			}
+		}
+
+		for (int i = 1; i <= ninput; i++) {
+			StoredData input = inputData.get(i - 1);
+			if (input.name != null) {
+				properties.put(String.format("input%d_%s", i, input.name), inputurls.get(i - 1));
+
+			}
+		}
+
+		LOGGER.debug("Dataspace->Adding output properties for " + noutput + " outputs");
+		for (int i = 1; i <= noutput; i++) {
+			properties.put(String.format("output%d_%s", i, outputData.get(i - 1).name), outputurls.get(i - 1));
+
+		}
+
+		LOGGER.debug("Dataspace->Properties of the folder: {} ", properties);
+
+		LOGGER.debug("Dataspace->Saving properties to ProvO XML file {} outputs", noutput);
+
+		/*
+		 * XStream xstream = new XStream(); String xmlproperties =
+		 * xstream.toXML(properties);
+		 */
+		try {
+			String xmlproperties = ProvOGenerator.toProvO(computation, inputData, outputData);
+
+			File xmltosave = new File(config.getPersistencePath(), "prov_o_" + UUID.randomUUID());
+			FileTools.saveString(xmltosave.getAbsolutePath(), xmlproperties, true, "UTF-8");
+			try (InputStream sis = new FileInputStream(xmltosave)) {
+				newcomputationFolder.uploadFile(sis, computation.id + ".xml", computation.operatorDescription);
+			}
+			xmltosave.delete();
+		} catch (Exception e) {
+			LOGGER.error("Dataspace->Failed creating ProvO XML file ", e);
+		}
+		/*
+		 * List<String> scopes = new ArrayList<String>();
+		 * scopes.add(config.getGcubeScope()); ws.createGcubeItem(computation.id,
+		 * computation.operatorDescription, scopes, computation.user, itemType,
+		 * properties, newcomputationFolder.getId());
+		 */
+		newcomputationFolder.setMetadata(new Metadata(properties));
 
 		LOGGER.debug("Dataspace->finished uploading computation data");
 	}
 
-	public String buildCompositePayload(List<StoredData> inputData,String payload, String inputName){
+	public String buildCompositePayload(List<StoredData> inputData, String payload, String inputName) {
 
-		for (StoredData input:inputData){
-			if (inputName.equals(input.description)){
-				payload = payload.replace(input.name,input.payload);
+		for (StoredData input : inputData) {
+			if (inputName.equals(input.description)) {
+				payload = payload.replace(input.name, input.payload);
 			}
 		}
 		return payload;
 	}
 
-
-	public void writeProvenance(ComputationData computation, List<StoredData> inputData, List<StoredData> outputData) throws Exception {
+	public void writeProvenance(ComputationData computation, List<StoredData> inputData, List<StoredData> outputData)
+			throws Exception {
 		LOGGER.debug("Dataspace->connecting to Workspace");
-		HomeManagerFactory factory = HomeLibrary.getHomeManagerFactory();
-		HomeManager manager = factory.getHomeManager();
-		LOGGER.debug("Dataspace->getting user");
-		User user = manager.createUser(computation.user);
-		Home home = manager.getHome(user);
-		LOGGER.debug("Dataspace->getting root folder");
-		Workspace ws = home.getWorkspace();
-		WorkspaceFolder root = ws.getRoot();
 		LOGGER.debug("Dataspace->create folders network");
-		createFoldersNetwork(ws, root);
-		WorkspaceFolder dataminerItem = (WorkspaceFolder) root.find(dataminerFolder);
+		FolderContainer dataminerFolder = createFoldersNetwork();
 		LOGGER.debug("Dataspace->****uploading input files****");
-		uploadInputData(inputData, dataminerItem);
+		uploadInputData(inputData, dataminerFolder);
 		LOGGER.debug("Dataspace->****uploading output files****");
-		uploadOutputData(outputData, dataminerItem);
+		uploadOutputData(outputData, dataminerFolder);
 		LOGGER.debug("Dataspace->****uploading computation files****");
-		uploadComputationData(computation, inputData, outputData, dataminerItem, ws);
+		uploadComputationData(computation, inputData, outputData, dataminerFolder);
 		LOGGER.debug("Dataspace->provenance management finished");
 		LOGGER.debug("Dataspace->deleting generated files");
 		AbstractEcologicalEngineMapper.deleteGeneratedFiles(generatedFiles);
@@ -414,29 +438,20 @@ public class DataspaceManager implements Runnable {
 		try {
 			deleteRunningComputationData();
 		} catch (Exception e) {
-			LOGGER.debug("Dataspace->impossible to delete running computation : {} ",e.getMessage());
+			LOGGER.debug("Dataspace->impossible to delete running computation : {} ", e.getMessage());
 		}
-		// LOGGER.debug("Dataspace->updating computation status");
-		// LOGGER.debug("Dataspace->connecting to Workspace");
-		HomeManagerFactory factory = HomeLibrary.getHomeManagerFactory();
-		HomeManager manager = factory.getHomeManager();
-		// LOGGER.debug("Dataspace->getting user");
-		User user = manager.createUser(computation.user);
-		Home home = manager.getHome(user);
-		// LOGGER.debug("Dataspace->getting root folder");
-		Workspace ws = home.getWorkspace();
-		WorkspaceFolder root = ws.getRoot();
+
 		// LOGGER.debug("Dataspace->create folders network");
-		createFoldersNetwork(ws, root);
-		WorkspaceFolder dataminerFolderWS = (WorkspaceFolder) root.find(dataminerFolder);
-		WorkspaceItem computationsFolderItem = dataminerFolderWS.find(computationsFolder);
-		// LOGGER.debug("Dataspace->Creating computation item " + computation.id+" with status"+computation.status);
+		FolderContainer folderContainer = createFoldersNetwork();
+
+		FolderContainer computationsContainer = (FolderContainer) folderContainer.findByName(computationsFolder)
+				.getContainers().get(0);
+		// LOGGER.debug("Dataspace->Creating computation item " +
+		// computation.id+" with status"+computation.status);
 		String itemType = "COMPUTATION";
-		
-		
-		
+
 		// write a computation item for the computation
-		LinkedHashMap<String, String> properties = new LinkedHashMap<String, String>();
+		Map<String, Object> properties = new LinkedHashMap<String, Object>();
 		properties.put(computation_id, computation.id);
 		properties.put(hostname, WPSConfig.getInstance().getWPSConfig().getServer().getHostname());
 		properties.put(vre, computation.vre);
@@ -452,24 +467,34 @@ public class DataspaceManager implements Runnable {
 
 		List<String> scopes = new ArrayList<String>();
 		scopes.add(config.getGcubeScope());
-		ws.createGcubeItem(computation.id, computation.operatorDescription, scopes, computation.user, itemType, properties, computationsFolderItem.getId());
+
+		// TODO: update gcubeItem not recreate it...
+		GCubeItem gcubeItem = new GCubeItem();
+		gcubeItem.setName(this.statusComputationName);
+		gcubeItem.setDescription(computation.operatorDescription);
+		gcubeItem.setScopes(scopes.toArray(new String[scopes.size()]));
+		gcubeItem.setItemType(itemType);
+		gcubeItem.setMetadata(new Metadata(properties));
+		gcubeItem.setCreator(AuthorizationProvider.instance.get().getClient().getId());
+
+		computationsContainer.newGcubeItem(gcubeItem);
 
 		LOGGER.debug("Dataspace->finished uploading computation data");
 	}
 
-	public String getStatus(String status){
+	public String getStatus(String status) {
 		double statusD = 0;
-		try{
+		try {
 			statusD = Double.parseDouble(status);
-		}catch(Exception e){
+		} catch (Exception e) {
 			return status;
 		}
 
-		if (statusD==100)
+		if (statusD == 100)
 			return "completed";
-		else if (statusD==-2)
+		else if (statusD == -2)
 			return "error";
-		else if (statusD==-1)
+		else if (statusD == -1)
 			return "cancelled";
 		else
 			return status;
@@ -479,66 +504,75 @@ public class DataspaceManager implements Runnable {
 
 		LOGGER.debug("Dataspace->deleting computation item");
 		LOGGER.debug("Dataspace->connecting to Workspace");
-		HomeManagerFactory factory = HomeLibrary.getHomeManagerFactory();
-		HomeManager manager = factory.getHomeManager();
-		LOGGER.debug("Dataspace->getting user");
-		User user = manager.createUser(computation.user);
-		Home home = manager.getHome(user);
-		LOGGER.debug("Dataspace->getting root folder");
-		Workspace ws = home.getWorkspace();
-		WorkspaceFolder root = ws.getRoot();
-		WorkspaceFolder dataminerFolderWS = (WorkspaceFolder) root.find(dataminerFolder);
-		WorkspaceItem computationsFolderItem = dataminerFolderWS.find(computationsFolder);
+		StorageHubClient shc = new StorageHubClient();
+		FolderContainer dataminerContainer = (FolderContainer) shc.getWSRoot().findByName(dataminerFolder)
+				.getContainers().get(0);
+		FolderContainer computationContainer = (FolderContainer) dataminerContainer.findByName(computationsFolder)
+				.getContainers().get(0);
 		LOGGER.debug("Dataspace->removing computation data");
-		WorkspaceFolder computationsFolderWs = ((WorkspaceFolder) computationsFolderItem);
-		WorkspaceItem wi = computationsFolderWs.find(computation.id);
-		if (wi!=null){
-			LOGGER.debug("Dataspace->Found "+computation.id+" under "+computationsFolderWs.getName()+" - removing");
-			wi.remove();
-		}
-		else
-			LOGGER.debug("Dataspace->Warning Could not find "+computation.id+" under "+computationsFolderWs.getName());
 
-		int maxtries = 3;
-		int i =1;
-		while (ws.exists(computation.id,computationsFolderWs.getId()) && i<maxtries){
-			LOGGER.debug("Dataspace->computation data still exist... retrying "+i);
-			Thread.sleep(1000);
-			computationsFolderWs.find(computation.id).remove();
-			i++;
-		}
+		List<ItemContainer<? extends Item>> wi = computationContainer.findByName(this.statusComputationName)
+				.getContainers();
+		if (!wi.isEmpty()) {
+			for (ItemContainer<? extends Item> container : wi) {
+				boolean retry = false;
+				do {
+					try {
+						container.forceDelete();
+						retry = false;
+					} catch (ItemLockedException e) {
+						LOGGER.warn("item locked, retrying");
+						Thread.sleep(1000);
+						retry = true;
+					}
+				} while (retry);
+			}
+		} else
+			LOGGER.debug("Dataspace->Warning Could not find {} under {}", this.statusComputationName,
+					computationContainer.get().getName());
 
-		LOGGER.debug("Dataspace->finished removing computation data - success "+!ws.exists(computation.id,computationsFolderWs.getId()));
+		/*
+		 * TODO: ASK GIANPAOLO int maxtries = 3; int i =1; while
+		 * (ws.exists(computation.id,computationsFolderWs.getId()) && i<maxtries){
+		 * LOGGER.debug("Dataspace->computation data still exist... retrying "+i );
+		 * Thread.sleep(1000); computationsFolderWs.find(computation.id).remove(); i++;
+		 * }
+		 */
+
+		LOGGER.debug("Dataspace->finished removing computation data ");
 	}
 
-	public static String getExtension(String payload, String type){
+	// TODO
+	public static String getExtension(String payload) {
+		LOGGER.debug("DataSpace->Get Extension from: " + payload);
 		String extension = "";
-		if (type.toLowerCase().equals("text/plain")){}
-		else if (payload.toLowerCase().startsWith("http")){
+		if (payload.toLowerCase().startsWith("http")) {
 			try {
-				URL obj= new URL(payload);
+				URL obj = new URL(payload);
 				URLConnection conn = obj.openConnection();
 				// get all headers
 				Map<String, List<String>> map = conn.getHeaderFields();
 				for (Map.Entry<String, List<String>> entry : map.entrySet()) {
 					String value = entry.getValue().toString();
-					if (value.toLowerCase().contains("filename=")){
-						System.out.println("DataSpace->Searching in http header: found "+value);
-						extension = value.substring(value.lastIndexOf("."),value.lastIndexOf("\""));
+					LOGGER.debug("Header value: " + value);
+					if (value.toLowerCase().contains("filename")) {
+						LOGGER.debug("DataSpace->Searching in http header: found " + value);
+						extension = value.substring(value.lastIndexOf("."), value.lastIndexOf("\""));
+						break;
 					}
 				}
 				conn.getInputStream().close();
 			} catch (Exception e) {
-				System.out.println("DataSpace->Error in the payload http link "+e.getMessage());
+				LOGGER.warn("DataSpace->Error in the payload http link ", e);
 			}
-		}
-		else {
+		} else {
 			File paylFile = new File(payload);
-			if (paylFile.exists()){
+			if (paylFile.exists()) {
 				String paylname = paylFile.getName();
 				extension = paylname.substring(paylname.lastIndexOf("."));
 			}
 		}
+		LOGGER.debug("DataSpace->Extension retrieved: " + extension);
 		return extension;
 	}
 

src/main/java/org/gcube/dataanalysis/wps/statisticalmanager/synchserver/mapping/dataspace/ProvOGenerator.java

@@ -2,7 +2,6 @@ package org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mapping.datasp
 
 import java.io.StringReader;
 import java.io.StringWriter;
-import java.util.ArrayList;
 import java.util.List;
 
 import javax.xml.parsers.DocumentBuilder;

src/main/resources/templates/setup.cfg

@@ -1,3 +1,3 @@
-maxcomputations=4
+maxcomputations=1
 saveond4sstorage=true
 simulationMode=false

src/main/resources/templates/wpsCapabilitiesSkeleton.xml

@@ -5,7 +5,7 @@
 	xsi:schemaLocation="http://www.opengis.net/wps/1.0.0 http://schemas.opengis.net/wps/1.0.0/wpsGetCapabilities_response.xsd"
 	updateSequence="1">
 	<ows:ServiceIdentification>
-		<ows:Title>D4Science WPS Service for synchronous executions</ows:Title>
+		<ows:Title>D4Science DataMiner Service</ows:Title>
 		<ows:Abstract>Service based on the 52°North implementation of WPS 1.0.0</ows:Abstract>
 		<ows:Keywords>
 			<ows:Keyword>WPS</ows:Keyword>
@@ -19,8 +19,8 @@
 		<ows:AccessConstraints>NONE</ows:AccessConstraints>
 	</ows:ServiceIdentification>
 	<ows:ServiceProvider>
-		<ows:ProviderName>National Research Council of Italy</ows:ProviderName>
-		<ows:ProviderSite xlink:href="www.d4science.org" />
+		<ows:ProviderName>D4Science</ows:ProviderName>
+		<ows:ProviderSite xlink:href="https://www.d4science.org" />
 		<ows:ServiceContact>
 			<ows:IndividualName>Gianpaolo Coro</ows:IndividualName>
 			<ows:PositionName>Researcher</ows:PositionName>
@@ -34,7 +34,7 @@
 					<ows:AdministrativeArea>Istituto di Scienza e Tecnologie dell'Informazione A. Faedo</ows:AdministrativeArea>
 					<ows:PostalCode>56124</ows:PostalCode>
 					<ows:Country>Italy</ows:Country>
-					<ows:ElectronicMailAddress>gianpaolo.coro@isti.cnr.it</ows:ElectronicMailAddress>
+					<ows:ElectronicMailAddress>dataminer-managers@d4science.org</ows:ElectronicMailAddress>
 				</ows:Address>
 			</ows:ContactInfo>
 		</ows:ServiceContact>
@@ -43,31 +43,29 @@
 		<ows:Operation name="GetCapabilities">
 			<ows:DCP>
 				<ows:HTTP>
-					<ows:Get xlink:href="http://#HOST#:#PORT#/wps/WebProcessingService?" />
-					<ows:Post xlink:href="http://#HOST#:#PORT#/wps/WebProcessingService?" />
+					<ows:Get xlink:href="#PROTOCOL#://#HOST#:#PORT#/wps/WebProcessingService?" />
+					<ows:Post xlink:href="#PROTOCOL#://#HOST#:#PORT#/wps/WebProcessingService?" />
 				</ows:HTTP>
 			</ows:DCP>
 		</ows:Operation>
 		<ows:Operation name="DescribeProcess">
 			<ows:DCP>
 				<ows:HTTP>
-					<ows:Get xlink:href="http://#HOST#:#PORT#/wps/WebProcessingService?" />
-					<ows:Post xlink:href="http://#HOST#:#PORT#/wps/WebProcessingService?" />
+					<ows:Get xlink:href="#PROTOCOL#://#HOST#:#PORT#/wps/WebProcessingService?" />
+					<ows:Post xlink:href="#PROTOCOL#://#HOST#:#PORT#/wps/WebProcessingService?" />
 				</ows:HTTP>
 			</ows:DCP>
 		</ows:Operation>
 		<ows:Operation name="Execute">
 			<ows:DCP>
 				<ows:HTTP>
-					<ows:Get xlink:href="http://#HOST#:#PORT#/wps/WebProcessingService?" />
-					<ows:Post xlink:href="http://#HOST#:#PORT#/wps/WebProcessingService?" />
+					<ows:Get xlink:href="#PROTOCOL#://#HOST#:#PORT#/wps/WebProcessingService?" />
+					<ows:Post xlink:href="#PROTOCOL#://#HOST#:#PORT#/wps/WebProcessingService?" />
 				</ows:HTTP>
 			</ows:DCP>
 		</ows:Operation>
 	</ows:OperationsMetadata>
-	<wps:ProcessOfferings>
-	#PROCESSES#
-	</wps:ProcessOfferings>
+	<wps:ProcessOfferings>#PROCESSES#</wps:ProcessOfferings>
 	<wps:Languages>
 		<wps:Default>
 			<ows:Language>en-GB</ows:Language>

src/test/java/org/gcube/dataanalysis/wps/statisticalmanager/synchserver/mapping/TokenManagerTest.java

@@ -0,0 +1,26 @@
+package org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mapping;
+
+import org.apache.log4j.BasicConfigurator;
+import org.junit.Test;
+
+public class TokenManagerTest {
+
+	private static final String JWT_TOKEN = "";
+	private static final String SCOPE = "/gcube/devsec/devVRE";
+
+	
+	@Test
+	public void retrieveTokenFromUriResolver() throws Exception {
+		try {
+			BasicConfigurator.configure();
+			System.out.println("Test Retrieve Token From Uri Resolver");
+			TokenManager tm = new TokenManager();
+			String token = tm.getGcubeTokenFromUriResolver(JWT_TOKEN, SCOPE);
+			System.out.println("GcubeToken retrieved: "+token);
+		} catch (Exception e) {
+			System.out.println(e.getLocalizedMessage());
+			e.getStackTrace();
+		}
+	}
+
+}

src/test/java/org/gcube/dataanalysis/wps/statisticalmanager/synchserver/test/AlgorithmTest.java

@@ -17,22 +17,22 @@ import org.junit.Test;
 
 public class AlgorithmTest {
 
-	List<String> executeOnly = Arrays.asList();
+	List<String> executeOnly = Arrays.asList("#BIONYM", "#AQUAMAPS_SUITABLE", "#AQUAMAPS_SUITABLE 21 sp", "#BIONYM1024","#CMSY2");
 			
 	@Test
 	public void executeAlgorithmsFromFile() throws Exception{
 		
 		String env = "dev";
 		
-		Properties prop = new Properties();
+		/*Properties prop = new Properties();
 		prop.load(AlgorithmTest.class.getResourceAsStream("/test_params.properties"));
-			
+			*/
 		
 		String protocol = "http";
-		String hostname = prop.getProperty(env+".host");
-		String token = prop.getProperty(env+".token");
-		String layerID = prop.getProperty(env+".layer");
-		
+		String hostname = "dataminer-genericworkers.d4science.org";
+		String token = "257800d8-24bf-4bae-83cd-ea99369e7dd6-843339462";
+		String layerID = "08ee0d70-4d8b-4f42-8b06-d709482bca95";
+						 
 		Iterator<String> uris =  getUrisIterator();
 		
 		HttpClient client = new HttpClient();
@@ -43,7 +43,7 @@ public class AlgorithmTest {
 			if (nextLine.startsWith("#"))
 				algorithmName = nextLine;
 			else{
-				if (!(executeOnly.isEmpty() || executeOnly.contains(algorithmName))) continue;
+				if (executeOnly.contains(algorithmName)) continue;
 				String callUrl = nextLine.replace("{PROTOCOL}", protocol).replace("{HOST}", hostname).replace("{TOKEN}", token).replace("{LAYERID}", layerID);
 				try{
 					long start = System.currentTimeMillis();

src/test/java/org/gcube/dataanalysis/wps/statisticalmanager/synchserver/test/MultiThreadingCalls.java

@@ -18,13 +18,8 @@ public class MultiThreadingCalls {
 		
 //		http://statistical-manager-new.d4science.org:8080/wps/WebProcessingService?request=Execute&service=WPS&version=1.0.0&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL&DataInputs=scope=/gcube/devsec/devVRE;user.name=tester;SpeciesAuthorName=Gadus%20morhua;Taxa_Authority_File=ASFIS;Parser_Name=SIMPLE;Activate_Preparsing_Processing=true;Use_Stemmed_Genus_and_Species=false;Accuracy_vs_Speed=MAX_ACCURACY;Matcher_1=GSAy;Threshold_1=0.6;MaxResults_1=10
 			
-//		final URL urlToCall = new URL("http://"+host+":8080/wps/WebProcessingService?request=Execute&service=WPS&version=1.0.0&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.modellers.FEED_FORWARD_ANN&DataInputs=" +
-//				URLEncoder.encode("scope=/gcube/devsec;user.name=test.user;LayersNeurons=10|10;LearningThreshold=0.01;MaxIterations=100;ModelName=wps_ann;Reference=1;TargetColumn=depthmean;TrainingColumns=depthmin|depthmax;TrainingDataSet=http://goo.gl/juNsCK@MimeType=text/csv","UTF-8"));
 			
-/*
-		final URL urlToCall = new URL("http://"+host+"/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token=4ccc2c35-60c9-4c9b-9800-616538d5d48b&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.XMEANS&DataInputs=" +
-				URLEncoder.encode("OccurrencePointsClusterLabel=OccClustersTest;min_points=1;maxIterations=100;minClusters=1;maxClusters=3;OccurrencePointsTable=http://goo.gl/VDzpch;FeaturesColumnNames=depthmean|sstmnmax|salinitymean;","UTF-8"));
-*/
+
 		final URL urlToCall = new URL("http://dataminer1-devnext.d4science.org/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token=f9d49d76-cd60-48ed-9f8e-036bcc1fc045-98187548&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SUBMITQUERY&DataInputs=" +
 				URLEncoder.encode("DatabaseName=fishbase;Query=select * from food limit 100;Apply Smart Correction=false;Language=POSTGRES;ResourceName=FishBase;Read-Only Query=true;","UTF-8"));
 		

src/test/java/org/gcube/dataanalysis/wps/statisticalmanager/synchserver/test/TestMappedEvaluators.java

@@ -42,7 +42,6 @@ public class TestMappedEvaluators {
 		public void testQualityAnalysis() throws Exception{
 			HRS algorithm = new HRS();
 			
-//			http://localhost:8080/wps/WebProcessingService?request=Execute&service=WPS&version=1.0.0&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS&DataInputs=user.name=test.user;scope=/gcube/devsec;NegativeCasesTableKeyColumn=csquarecode;DistributionTableProbabilityColumn=probability;PositiveCasesTableKeyColumn=csquarecode;PositiveThreshold=0.8;PositiveCasesTable=http://goo.gl/DEYAbT;DistributionTableKeyColumn=csquarecode;DistributionTable=http://goo.gl/DEYAbT;NegativeThreshold=0.3;NegativeCasesTable=http://goo.gl/DEYAbT;
 				
 //			algorithm.setScope("/gcube/devsec");
 			

src/test/resources/AlgorithmTestURIs.txt

@@ -5,58 +5,58 @@
 {PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ESRI_GRID_EXTRACTION&DataInputs=Layer={LAYERID};YResolution=0.5;XResolution=0.5;BBox_LowerLeftLong=-50;BBox_UpperRightLat=60;BBox_LowerLeftLat=-60;BBox_UpperRightLong=50;Z=0;TimeIndex=0;
 #DBSCAN
 {PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN
-{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN&DataInputs=OccurrencePointsClusterLabel=OccClustersTest;epsilon=10;min_points=1;OccurrencePointsTable={PROTOCOL}://goo.gl/VDzpch;FeaturesColumnNames=depthmean|sstmnmax|salinitymean;
+{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.DBSCAN&DataInputs=OccurrencePointsClusterLabel=OccClustersTest;epsilon=10;min_points=1;OccurrencePointsTable={PROTOCOL}://brokenlink/VDzpch;FeaturesColumnNames=depthmean|sstmnmax|salinitymean;
 #KMEANS
 {PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS
-{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS&DataInputs=OccurrencePointsClusterLabel=OccClustersTest;k=3;max_runs=100;min_points=1;max_optimization_steps=10;OccurrencePointsTable={PROTOCOL}://goo.gl/VDzpch;FeaturesColumnNames=depthmean|sstmnmax|salinitymean;
+{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.KMEANS&DataInputs=OccurrencePointsClusterLabel=OccClustersTest;k=3;max_runs=100;min_points=1;max_optimization_steps=10;OccurrencePointsTable={PROTOCOL}://brokenlink/VDzpch;FeaturesColumnNames=depthmean|sstmnmax|salinitymean;
 #LOF
 {PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.LOF
-{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.LOF&DataInputs=FeaturesColumnNames=depthmean|sstmnmax|salinitymean;PointsClusterLabel=OccClustersTest;minimal_points_lower_bound=2;PointsTable={PROTOCOL}://goo.gl/VDzpch;minimal_points_upper_bound=10;distance_function=euclidian distance;lof_threshold=2;
+{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.LOF&DataInputs=FeaturesColumnNames=depthmean|sstmnmax|salinitymean;PointsClusterLabel=OccClustersTest;minimal_points_lower_bound=2;PointsTable={PROTOCOL}://brokenlink/VDzpch;minimal_points_upper_bound=10;distance_function=euclidian distance;lof_threshold=2;
 #XMEANS
 {PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.XMEANS
-{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.XMEANS&DataInputs=OccurrencePointsClusterLabel=OccClustersTest;min_points=1;maxIterations=100;minClusters=1;maxClusters=3;OccurrencePointsTable={PROTOCOL}://goo.gl/VDzpch;FeaturesColumnNames=depthmean|sstmnmax|salinitymean;
+{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.clusterers.XMEANS&DataInputs=OccurrencePointsClusterLabel=OccClustersTest;min_points=1;maxIterations=100;minClusters=1;maxClusters=3;OccurrencePointsTable={PROTOCOL}://brokenlink/VDzpch;FeaturesColumnNames=depthmean|sstmnmax|salinitymean;
 #BIONYM
 {PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM
-{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM&DataInputs=Matcher_1=LEVENSHTEIN;Matcher_4=NONE;Matcher_5=NONE;Matcher_2=NONE;Matcher_3=NONE;Threshold_1=0.6;RawTaxaNamesTable={PROTOCOL}://goo.gl/N9e3pC;Threshold_2=0.6;Accuracy_vs_Speed=MAX_ACCURACY;MaxResults_2=10;MaxResults_1=10;Threshold_3=0.4;RawNamesColumn=species;Taxa_Authority_File=FISHBASE;Parser_Name=SIMPLE;OutputTableLabel=bionymwps;MaxResults_4=0;Threshold_4=0;MaxResults_3=0;MaxResults_5=0;Threshold_5=0;Use_Stemmed_Genus_and_Species=false;Activate_Preparsing_Processing=true;
+{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.BIONYM&DataInputs=Matcher_1=LEVENSHTEIN;Matcher_4=NONE;Matcher_5=NONE;Matcher_2=NONE;Matcher_3=NONE;Threshold_1=0.6;RawTaxaNamesTable={PROTOCOL}://brokenlink/N9e3pC;Threshold_2=0.6;Accuracy_vs_Speed=MAX_ACCURACY;MaxResults_2=10;MaxResults_1=10;Threshold_3=0.4;RawNamesColumn=species;Taxa_Authority_File=FISHBASE;Parser_Name=SIMPLE;OutputTableLabel=bionymwps;MaxResults_4=0;Threshold_4=0;MaxResults_3=0;MaxResults_5=0;Threshold_5=0;Use_Stemmed_Genus_and_Species=false;Activate_Preparsing_Processing=true;
 #BIONYM_LOCAL
 {PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL
 {PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIONYM_LOCAL&DataInputs=Matcher_1=LEVENSHTEIN;Matcher_4=NONE;Matcher_5=NONE;Matcher_2=NONE;Matcher_3=NONE;Threshold_1=0.6;Threshold_2=0.6;Accuracy_vs_Speed=MAX_ACCURACY;MaxResults_2=10;MaxResults_1=10;Threshold_3=0.4;Taxa_Authority_File=FISHBASE;Parser_Name=SIMPLE;MaxResults_4=0;Threshold_4=0;MaxResults_3=0;MaxResults_5=0;Threshold_5=0;Use_Stemmed_Genus_and_Species=false;Activate_Preparsing_Processing=true;SpeciesAuthorName=Gadus morhua
 #ABSENCE CELLS FROM AQUAMAPS
 {PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS
-{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS&DataInputs=Number_of_Points=20;Table_Label=hcaf_filtered_wps;Aquamaps_HSPEC={PROTOCOL}://goo.gl/24XrmE;Take_Randomly=true;Species_Code=Fis-30189;
+{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ABSENCE_CELLS_FROM_AQUAMAPS&DataInputs=Number_of_Points=20;Table_Label=hcaf_filtered_wps;Aquamaps_HSPEC={PROTOCOL}://brokenlink/24XrmE;Take_Randomly=true;Species_Code=Fis-30189;
 #HCAF_FILTER
 {PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER
 {PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.HCAF_FILTER&DataInputs=B_Box_Left_Lower_Lat=-17;B_Box_Right_Upper_Long=147;B_Box_Right_Upper_Lat=25;B_Box_Left_Lower_Long=89;Table_Label=wps_hcaf_filter;
 #MAX_ENT_NICHE_MODELLING
 {PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING
-{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING&DataInputs=LongitudeColumn=decimallongitude;LatitudeColumn=decimallatitude;Z=0;Layers={LAYERID};TimeIndex=0;MaxIterations=100;SpeciesName=Latimeria%20chalumnae;DefaultPrevalence=0.5;YResolution=0.5;OccurrencesTable=http://goo.gl/5cnKKp;XResolution=0.5;OutputTableLabel=wps_maxent;
+{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MAX_ENT_NICHE_MODELLING&DataInputs=LongitudeColumn=decimallongitude;LatitudeColumn=decimallatitude;Z=0;Layers={LAYERID};TimeIndex=0;MaxIterations=100;SpeciesName=Latimeria%20chalumnae;DefaultPrevalence=0.5;YResolution=0.5;OccurrencesTable=http://brokenlink/5cnKKp;XResolution=0.5;OutputTableLabel=wps_maxent;
 #OCCURRENCE_ENRICHMENT
 #{PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT
-#{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT&DataInputs=OptionalFilter=%20;OutputTableName=wps_enriched;FeaturesNames=temp;OccurrenceTable=http://goo.gl/ZfFcfE;LongitudeColumn=decimallongitude;LatitudeColumn=decimallatitude;ScientificNameColumn=scientificname;Layers={LAYERID};TimeColumn=eventdate;Resolution=0.5;
+#{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCE_ENRICHMENT&DataInputs=OptionalFilter=%20;OutputTableName=wps_enriched;FeaturesNames=temp;OccurrenceTable=http://brokenlink/ZfFcfE;LongitudeColumn=decimallongitude;LatitudeColumn=decimallatitude;ScientificNameColumn=scientificname;Layers={LAYERID};TimeColumn=eventdate;Resolution=0.5;
 #PRESENCE_CELLS_GENERATION
 {PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION
 {PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.PRESENCE_CELLS_GENERATION&DataInputs=Number_of_Points=20;Table_Label=hcaf_filtered_wps;Species_Code=Fis-30189;
 #FAO_OCEAN_AREA_COLUMN_CREATOR
 {PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR
-{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR&DataInputs=Resolution=5;Latitude_Column=decimallatitude;InputTable={PROTOCOL}://goo.gl/sdlD5a;Longitude_Column=decimallongitude;OutputTableName=wps_fao_area_column;
+{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR&DataInputs=Resolution=5;Latitude_Column=decimallatitude;InputTable={PROTOCOL}://brokenlink/sdlD5a;Longitude_Column=decimallongitude;OutputTableName=wps_fao_area_column;
 #FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT
 {PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT
-{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT&DataInputs=Resolution=5;InputTable={PROTOCOL}://goo.gl/yJTIBZ;Longitude_Column=centerlong;Quadrant_Column=quadrant;OutputTableName=wps_fao_quadrant;Latitude_Column=centerlat;
+{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.FAO_OCEAN_AREA_COLUMN_CREATOR_FROM_QUADRANT&DataInputs=Resolution=5;InputTable={PROTOCOL}://brokenlink/yJTIBZ;Longitude_Column=centerlong;Quadrant_Column=quadrant;OutputTableName=wps_fao_quadrant;Latitude_Column=centerlat;
 #CSQUARE_COLUMN_CREATOR
 {PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR
-{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR&DataInputs=CSquare_Resolution=0.1;Latitude_Column=decimallatitude;InputTable={PROTOCOL}://goo.gl/sdlD5a;Longitude_Column=decimallongitude;OutputTableName=wps_csquare_column;
+{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.CSQUARE_COLUMN_CREATOR&DataInputs=CSquare_Resolution=0.1;Latitude_Column=decimallatitude;InputTable={PROTOCOL}://brokenlink/sdlD5a;Longitude_Column=decimallongitude;OutputTableName=wps_csquare_column;
 #GENERIC_CHARTS
 {PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS
-{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS&DataInputs=Quantities=fvalue;InputTable={PROTOCOL}://goo.gl/lWTvcw;TopElementsNumber=10;Attributes=x|y
+{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GENERIC_CHARTS&DataInputs=Quantities=fvalue;InputTable={PROTOCOL}://brokenlink/lWTvcw;TopElementsNumber=10;Attributes=x|y
 #GEO_CHART
 {PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART
-{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART&DataInputs=Latitude=y;Quantities=x;Longitude=x;InputTable={PROTOCOL}://goo.gl/lWTvcw
+{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.GEO_CHART&DataInputs=Latitude=y;Quantities=x;Longitude=x;InputTable={PROTOCOL}://brokenlink/lWTvcw
 #TIME_GEO_CHART
 {PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART
-{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART&DataInputs=Time=time;Latitude=x;Longitude=y;Quantities=fvalue;InputTable={PROTOCOL}://goo.gl/lWTvcw;
+{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_GEO_CHART&DataInputs=Time=time;Latitude=x;Longitude=y;Quantities=fvalue;InputTable={PROTOCOL}://brokenlink/lWTvcw;
 #TIME_SERIES_CHARTS
 {PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS
-{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS&DataInputs=Attributes=x|y|z;Quantities=fvalue;InputTable={PROTOCOL}://goo.gl/lWTvcw;Time=time
+{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_CHARTS&DataInputs=Attributes=x|y|z;Quantities=fvalue;InputTable={PROTOCOL}://brokenlink/lWTvcw;Time=time
 #OBIS_SPECIES_OBSERVATIONS_PER_MEOW_AREA
 {PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SPECIES_OBSERVATION_MEOW_AREA_PER_YEAR
 {PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SPECIES_OBSERVATION_MEOW_AREA_PER_YEAR&DataInputs=Selected species=Gadus morhua;End_year=2015;Start_year=2000;Area_type=NORTH SEA;
@@ -80,16 +80,16 @@
 {PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.MOST_OBSERVED_TAXA&DataInputs=Level=GENUS;Taxa_number=10;End_year=2015;Start_year=2000;
 #TIME_SERIES_ANALYSIS
 {PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS
-{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS&DataInputs=FFT_Window_Samples=12;SSA_Points_to_Forecast=3;AggregationFunction=SUM;TimeSeriesTable={PROTOCOL}://goo.gl/lWTvcw;Sensitivity=LOW;SSA_Window_in_Samples=12;SSA_EigenvaluesThreshold=0.7;ValueColum=fvalue
+{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIME_SERIES_ANALYSIS&DataInputs=FFT_Window_Samples=12;SSA_Points_to_Forecast=3;AggregationFunction=SUM;TimeSeriesTable={PROTOCOL}://brokenlink/lWTvcw;Sensitivity=LOW;SSA_Window_in_Samples=12;SSA_EigenvaluesThreshold=0.7;ValueColum=fvalue
 #MAPS_COMPARISON
 {PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON
 {PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.MAPS_COMPARISON&DataInputs=TimeIndex_1=0;ValuesComparisonThreshold=0.1;TimeIndex_2=0;Z=0;KThreshold=0.5;Layer_1=483a4a32-729e-422b-b5e4-49f27ba93ec2;Layer_2=483a4a32-729e-422b-b5e4-49f27ba93ec2;
 #QUALITY_ANALYSIS
 {PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS
-{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS&DataInputs=NegativeCasesTableKeyColumn=csquarecode;DistributionTableProbabilityColumn=probability;PositiveCasesTableKeyColumn=csquarecode;PositiveThreshold=0.8;PositiveCasesTable={PROTOCOL}://goo.gl/8zWU7u;DistributionTableKeyColumn=csquarecode;DistributionTable={PROTOCOL}://goo.gl/cXbg2n;NegativeThreshold=0.3;NegativeCasesTable={PROTOCOL}://goo.gl/8zWU7u;
+{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.QUALITY_ANALYSIS&DataInputs=NegativeCasesTableKeyColumn=csquarecode;DistributionTableProbabilityColumn=probability;PositiveCasesTableKeyColumn=csquarecode;PositiveThreshold=0.8;PositiveCasesTable={PROTOCOL}://brokenlink/8zWU7u;DistributionTableKeyColumn=csquarecode;DistributionTable={PROTOCOL}://brokenlink/cXbg2n;NegativeThreshold=0.3;NegativeCasesTable={PROTOCOL}://brokenlink/8zWU7u;
 #DISCREPANCY_ANALYSIS
 {PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS
-{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS&DataInputs=ComparisonThreshold=0.1;SecondTable={PROTOCOL}://goo.gl/cXbg2n;FirstTable={PROTOCOL}://goo.gl/BBk8iB;KThreshold=0.5;MaxSamples=10000;FirstTableProbabilityColumn=probability;SecondTableProbabilityColumn=probability;FirstTableCsquareColumn=csquarecode;SecondTableCsquareColumn=csquarecode
+{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.DISCREPANCY_ANALYSIS&DataInputs=ComparisonThreshold=0.1;SecondTable={PROTOCOL}://brokenlink/cXbg2n;FirstTable={PROTOCOL}://brokenlink/BBk8iB;KThreshold=0.5;MaxSamples=10000;FirstTableProbabilityColumn=probability;SecondTableProbabilityColumn=probability;FirstTableCsquareColumn=csquarecode;SecondTableCsquareColumn=csquarecode
 #XYEXTRACTOR
 {PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR
 {PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR&DataInputs=OutputTableLabel=wps_xy_extractor;Layer={LAYERID};YResolution=0.5;XResolution=0.5;BBox_LowerLeftLong=-50;BBox_UpperRightLat=60;BBox_LowerLeftLat=-60;BBox_UpperRightLong=50;Z=0;TimeIndex=0;
@@ -101,22 +101,22 @@
 {PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION&DataInputs=OutputTableLabel=wps_z_extractor;Layer={LAYERID};Resolution=100;Y=38;TimeIndex=0;X=28
 #XYEXTRACTOR_TABLE
 {PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE
-{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE&DataInputs=TimeIndex=0;Z=0;filter= ;zColumn=lme;timeColumn=lme;xColumn=centerlong;yColumn=centerlat;geoReferencedTableName={PROTOCOL}://goo.gl/KjWYQG;valueColumn=oceanarea;XResolution=0.5;YResolution=0.5;BBox_UpperRightLong=50;BBox_LowerLeftLat=-60;BBox_LowerLeftLong=-50;BBox_UpperRightLat=60;OutputTableLabel=wps_xy_extr_table;
+{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.XYEXTRACTOR_TABLE&DataInputs=TimeIndex=0;Z=0;filter= ;zColumn=lme;timeColumn=lme;xColumn=centerlong;yColumn=centerlat;geoReferencedTableName={PROTOCOL}://brokenlink/KjWYQG;valueColumn=oceanarea;XResolution=0.5;YResolution=0.5;BBox_UpperRightLong=50;BBox_LowerLeftLat=-60;BBox_LowerLeftLong=-50;BBox_UpperRightLat=60;OutputTableLabel=wps_xy_extr_table;
 #TIMEEXTRACTION_TABLE
 {PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE
-{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE&DataInputs=Z=0;Resolution=0.5;filter= ;zColumn=lme;timeColumn=lme;xColumn=centerlong;yColumn=centerlat;Y=3.75;X=102.25;geoReferencedTableName={PROTOCOL}://goo.gl/VDzpch;valueColumn=centerlong;SamplingFreq=-1;OutputTableLabel=wps_time_extr_table;
+{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.TIMEEXTRACTION_TABLE&DataInputs=Z=0;Resolution=0.5;filter= ;zColumn=lme;timeColumn=lme;xColumn=centerlong;yColumn=centerlat;Y=3.75;X=102.25;geoReferencedTableName={PROTOCOL}://brokenlink/VDzpch;valueColumn=centerlong;SamplingFreq=-1;OutputTableLabel=wps_time_extr_table;
 #ZEXTRACTION_TABLE
 {PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE
-{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE&DataInputs=TimeIndex=0;Resolution=1;filter= ;zColumn=centerlong;xColumn=centerlong;yColumn=centerlat;Y=0.25;X=0.25;geoReferencedTableName={PROTOCOL}://goo.gl/VDzpch;valueColumn=oceanarea;OutputTableLabel=wps_z_table;
+{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ZEXTRACTION_TABLE&DataInputs=TimeIndex=0;Resolution=1;filter= ;zColumn=centerlong;xColumn=centerlong;yColumn=centerlat;Y=0.25;X=0.25;geoReferencedTableName={PROTOCOL}://brokenlink/VDzpch;valueColumn=oceanarea;OutputTableLabel=wps_z_table;
 #HRS
 {PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS
-{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS&DataInputs=PositiveCasesTable={PROTOCOL}://goo.gl/VDzpch;NegativeCasesTable={PROTOCOL}://goo.gl/VDzpch;OptionalCondition= ;ProjectingAreaTable={PROTOCOL}://goo.gl/VDzpch;FeaturesColumns=depthmin|depthmax;
+{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.evaluators.HRS&DataInputs=PositiveCasesTable={PROTOCOL}://brokenlink/VDzpch;NegativeCasesTable={PROTOCOL}://brokenlink/VDzpch;OptionalCondition= ;ProjectingAreaTable={PROTOCOL}://brokenlink/VDzpch;FeaturesColumns=depthmin|depthmax;
 #SGVM_INTERPOLATION
 {PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION
-{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION&DataInputs=headingAdjustment=0;maxspeedThr=6;minspeedThr=2;fm=0.5;margin=10;distscale=20;res=100;sigline=0.2;interval=120;equalDist=true;InputFile={PROTOCOL}://goo.gl/i16kPw;npoints=10;method=cHs;
+{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.SGVM_INTERPOLATION&DataInputs=headingAdjustment=0;maxspeedThr=6;minspeedThr=2;fm=0.5;margin=10;distscale=20;res=100;sigline=0.2;interval=120;equalDist=true;InputFile={PROTOCOL}://brokenlink/i16kPw;npoints=10;method=cHs;
 #BIOCLIMATE_HCAF
 {PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF
-{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF&DataInputs=HCAF_Table_List={PROTOCOL}://goo.gl/LTqufC|{PROTOCOL}://goo.gl/LTqufC;HCAF_Table_Names=h1|h2
+{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HCAF&DataInputs=HCAF_Table_List={PROTOCOL}://brokenlink/LTqufC|{PROTOCOL}://brokenlink/LTqufC;HCAF_Table_Names=h1|h2
 #BIOCLIMATE_HSPEN
 {PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN
 {PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.BIOCLIMATE_HSPEN&DataInputs=HSPEN_Table_List={PROTOCOL}://data-d.d4science.org/dDRpendoOEpnUE5nRzM4WHQ3RWVlVUorb3lwa2wzNWJHbWJQNStIS0N6Yz0|{PROTOCOL}://data-d.d4science.org/dDRpendoOEpnUE5nRzM4WHQ3RWVlVUorb3lwa2wzNWJHbWJQNStIS0N6Yz0;HSPEN_Table_Names=h1|h2;
@@ -131,7 +131,7 @@
 {PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.modellers.FEED_FORWARD_ANN&DataInputs=TrainingDataSet={PROTOCOL}://data-d.d4science.org/UndsT051bEZwbEpnRzM4WHQ3RWVlVDQ0eHNITWgzRXdHbWJQNStIS0N6Yz0;TrainingColumns=a|b;TargetColumn=t;LayersNeurons=1;Reference=1;LearningThreshold=0.001;MaxIterations=1000;ModelName=neuralnet_t;
 #FEED_FORWARD_A_N_N_DISTRIBUTION
 {PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.FEED_FORWARD_A_N_N_DISTRIBUTION
-{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.FEED_FORWARD_A_N_N_DISTRIBUTION&DataInputs=FeaturesTable={PROTOCOL}://data-d.d4science.org/UndsT051bEZwbEpnRzM4WHQ3RWVlVDQ0eHNITWgzRXdHbWJQNStIS0N6Yz0;FeaturesColumnNames=a|b;FinalTableLabel=Distrib_t;ModelName={PROTOCOL}://goo.gl/ggiPyX;
+{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.generators.FEED_FORWARD_A_N_N_DISTRIBUTION&DataInputs=FeaturesTable={PROTOCOL}://data-d.d4science.org/UndsT051bEZwbEpnRzM4WHQ3RWVlVDQ0eHNITWgzRXdHbWJQNStIS0N6Yz0;FeaturesColumnNames=a|b;FinalTableLabel=Distrib_t;ModelName={PROTOCOL}://brokenlink/ggiPyX;
 #OCCURRENCES_DUPLICATES_DELETER
 {PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCES_DUPLICATES_DELETER
 {PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.OCCURRENCES_DUPLICATES_DELETER&DataInputs=final_Table_Name=DeletedOcc_;OccurrencePointsTableName={PROTOCOL}://data-d.d4science.org/KzI1TmN5TCtJT2hnRzM4WHQ3RWVlZlZLdCttTThpUnRHbWJQNStIS0N6Yz0;longitudeColumn=decimalLongitude;latitudeColumn=decimalLatitude;recordedByColumn=recordedBy;scientificNameColumn=scientificName;eventDateColumn=eventDate;lastModificationColumn=modified;spatialTolerance=0.5;confidence=80;
@@ -170,7 +170,7 @@
 {PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.RASTER_DATA_PUBLISHER&DataInputs=PublicationLevel=PUBLIC;DatasetAbstract=Abstract;DatasetTitle=Generic Raster Layer Test3;RasterFile={PROTOCOL}://data.d4science.org/QTVNbXp5cmI0MG52TTE0K2paNzhXZWlCTHhweU8rUCtHbWJQNStIS0N6Yz0;InnerLayerName=analyzed_field;FileNameOnInfra=raster-1465493226242.nc;Topics=analyzed_field;SpatialResolution=-1;
 #Web app publisher
 {PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.WEB_APP_PUBLISHER
-{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.WEB_APP_PUBLISHER&DataInputs=ZipFile={PROTOCOL}://goo.gl/dYQ089;
+{PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.WEB_APP_PUBLISHER&DataInputs=ZipFile={PROTOCOL}://brokenlink/dYQ089;
 #ECOPATH_WITH_ECOSIM
 {PROTOCOL}://{HOST}/wps/WebProcessingService?Request=DescribeProcess&Service=WPS&Version=1.0.0&gcube-token={TOKEN}&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ECOPATH_WITH_ECOSIM
 {PROTOCOL}://{HOST}/wps/WebProcessingService?request=Execute&service=WPS&Version=1.0.0&gcube-token={TOKEN}&lang=en-US&Identifier=org.gcube.dataanalysis.wps.statisticalmanager.synchserver.mappedclasses.transducerers.ECOPATH_WITH_ECOSIM&DataInputs=Model File={PROTOCOL}://data.d4science.org/eHFkNmhoSUwxMVpmcElhcUlmQUpWaWRGSjQzNkFXNElHbWJQNStIS0N6Yz0;Config File={PROTOCOL}://data.d4science.org/ZGFWaGc4NjUrQmRmcElhcUlmQUpWbTNVQjhqdUV3OWdHbWJQNStIS0N6Yz0;