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dataminer-pool-manager
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git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-analysis/dataminer-pool-manager@148815 82a268e6-3cf1-43bd-a215-b396298e98cf

This commit is contained in:
Gabriele Giammatteo 2017-05-17 16:28:44 +00:00
parent 04c9b93715
commit cd23218da4
3 changed files with 5 additions and 25 deletions
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22
src/main/java/org/gcube/dataanalysis/dataminer/poolmanager/service/DMPMJob.java
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@ -76,25 +76,3 @@ public abstract class DMPMJob {
***REMOVED***
***REMOVED***
***REMOVED*** protected void updateSVNDependencies(Algorithm algo, boolean stagingVRE) throws IOException, SVNException {
***REMOVED*** for (Dependency d : algo.getDependencies()) {
***REMOVED***
***REMOVED*** if (d.getType().equals("os")) {
***REMOVED*** List<String> ls = new LinkedList<String>();
***REMOVED*** ls.add(d.getName());
***REMOVED*** this.svnUpdater.updateSVN((stagingVRE ? "test_": "") + "r_deb_pkgs.txt", ls);
***REMOVED*** ***REMOVED***
***REMOVED*** if (d.getType().equals("cran")) {
***REMOVED*** List<String> ls = new LinkedList<String>();
***REMOVED*** ls.add(d.getName());
***REMOVED*** this.svnUpdater.updateSVN((stagingVRE ? "test_": "") + "r_cran_pkgs.txt", ls);
***REMOVED*** ***REMOVED***
***REMOVED*** if (d.getType().equals("github")) {
***REMOVED*** List<String> ls = new LinkedList<String>();
***REMOVED*** ls.add(d.getName());
***REMOVED*** this.svnUpdater.updateSVN((stagingVRE ? "test_": "") + "r_github_pkgs.txt", ls);
***REMOVED*** ***REMOVED***
***REMOVED*** ***REMOVED***
***REMOVED******REMOVED***
***REMOVED***

5
src/main/java/org/gcube/dataanalysis/dataminer/poolmanager/util/SVNUpdater.java
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@ -67,6 +67,7 @@ public class SVNUpdater {
***REMOVED***check if the algorithm is already in the list (match the class name)
for(String l: lines){
if(l.contains(algorithm.getClazz())){
System.out.println("Not updating algorithm list beacuse already present");
return;
***REMOVED***
***REMOVED***
@ -74,14 +75,14 @@ public class SVNUpdater {
***REMOVED***the algorithm is not in the list. Add it
List<String> newContent = new LinkedList<>(Arrays.asList(lines));
newContent.add(this.generateAlgorithmEntry(algorithm, targetVRE, user, env));
Collections.sort(newContent);
***REMOVED***Collections.sort(newContent);
final SVNDeltaGenerator deltaGenerator = new SVNDeltaGenerator();
byte[] originalContents = byteArrayOutputStream.toByteArray();
final ISVNEditor commitEditor = svnRepository.getCommitEditor("update dependencies", null);
final ISVNEditor commitEditor = svnRepository.getCommitEditor("update algorithm list", null);
commitEditor.openRoot(-1);
commitEditor.openFile(file, -1);

3
src/test/java/org/gcube/dataanalysis/dataminerpoolmanager/SVNTests.java
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@ -20,7 +20,8 @@ public class SVNTests {
SVNUpdater svnUpdater = new SVNUpdater(new ServiceConfiguration("/home/ggiammat/tmp/dmpm.properties"));
Algorithm algo = AlgorithmBuilder.create("http:***REMOVED***data.d4science.org/dENQTTMxdjNZcGRpK0NHd2pvU0owMFFzN0VWemw3Zy9HbWJQNStIS0N6Yz0", "ICHTHYOP_MODEL");
algo.setClazz(algo.getClazz() + "TEST");
svnUpdater.updateRPRotoDeps(algo);
svnUpdater.updateSVNRProtoAlgorithmList(algo, "/d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab", "Dataminer Pool Manager", "Proto");
***REMOVED***
***REMOVED***