This commit is contained in:
Nunzio Andrea Galante 2017-09-20 16:51:21 +00:00
parent 4fbb06f7df
commit 7f554e0c0b
9 changed files with 579 additions and 408 deletions

View File

@ -28,23 +28,23 @@ public class DataminerPoolManager ***REMOVED***
***REMOVED*** ***REMOVED***
***REMOVED***Algorithm algo,String targetVRE, String category, String algorithm_type,String env) throws IOException, InterruptedException ***REMOVED*** ***REMOVED***Algorithm algo,String targetVRE, String category, String algorithm_type/*,String env*/) throws IOException, InterruptedException ***REMOVED***
Cluster stagingCluster = ClusterBuilder.getStagingDataminerCluster(env); Cluster stagingCluster = ClusterBuilder.getStagingDataminerCluster();
***REMOVED***Cluster rProtoCluster = ClusterBuilder.getRProtoCluster(); ***REMOVED***Cluster rProtoCluster = ClusterBuilder.getRProtoCluster();
DMPMJob job = new StagingJob(this.svnUpdater, algo, stagingCluster, /*rProtoCluster,*/ targetVRE, category, algorithm_type,env); DMPMJob job = new StagingJob(this.svnUpdater, algo, stagingCluster, /*rProtoCluster,*/ targetVRE, category, algorithm_type/*,env*/);
String id = job.start(); String id = job.start();
return id; return id;
***REMOVED*** ***REMOVED***
***REMOVED***Algorithm algo, String targetVRE, String category, String algorithm_type, String env) throws IOException, InterruptedException ***REMOVED*** ***REMOVED***Algorithm algo, String targetVRE, String category, String algorithm_type/*, String env*/) throws IOException, InterruptedException ***REMOVED***
***REMOVED***Cluster prodCluster = ClusterBuilder.getVRECluster(targetVREToken, targetVRE); ***REMOVED***Cluster prodCluster = ClusterBuilder.getVRECluster(targetVREToken, targetVRE);
DMPMJob job = new ProductionPublishingJob(this.svnUpdater, algo, /*prodCluster,*/ targetVRE, category, algorithm_type,env); DMPMJob job = new ProductionPublishingJob(this.svnUpdater, algo, /*prodCluster,*/ targetVRE, category, algorithm_type/*,env*/);
String id = job.start(); String id = job.start();
return id; return id;
***REMOVED*** ***REMOVED***

View File

@ -22,11 +22,11 @@ public class ProductionPublishingJob extends DMPMJob ***REMOVED***
private String category; private String category;
private String algorithm_type; private String algorithm_type;
***REMOVED***private String targetVREToken; ***REMOVED***private String targetVREToken;
private String env; ***REMOVED***private String env;
public ProductionPublishingJob(SVNUpdater svnUpdater, Algorithm algorithm, public ProductionPublishingJob(SVNUpdater svnUpdater, Algorithm algorithm,
***REMOVED***Cluster prodCluster,*/ String targetVREName, String category,String algorithm_type, String env) throws FileNotFoundException, UnsupportedEncodingException ***REMOVED*** ***REMOVED***Cluster prodCluster,*/ String targetVREName, String category,String algorithm_type/*, String env*/) throws FileNotFoundException, UnsupportedEncodingException ***REMOVED***
super(svnUpdater); super(svnUpdater);
this.algorithm = algorithm; this.algorithm = algorithm;
***REMOVED***this.prodCluster = prodCluster; ***REMOVED***this.prodCluster = prodCluster;
@ -34,7 +34,7 @@ public class ProductionPublishingJob extends DMPMJob ***REMOVED***
this.category = category; this.category = category;
this.algorithm_type = algorithm_type; this.algorithm_type = algorithm_type;
***REMOVED***this.targetVREToken = targetVREToken; ***REMOVED***this.targetVREToken = targetVREToken;
this.env= env; ***REMOVED***this.env= env;
this.jobLogs = new File(System.getProperty("user.home") + File.separator + "dataminer-pool-manager" + File.separator + "jobs"); this.jobLogs = new File(System.getProperty("user.home") + File.separator + "dataminer-pool-manager" + File.separator + "jobs");
@ -50,7 +50,7 @@ public class ProductionPublishingJob extends DMPMJob ***REMOVED***
***REMOVED***if (CheckPermission.apply(targetVREToken,targetVREName))***REMOVED*** ***REMOVED***if (CheckPermission.apply(targetVREToken,targetVREName))***REMOVED***
***REMOVED***this.svnUpdater.updateProdDeps(this.algorithm); ***REMOVED***this.svnUpdater.updateProdDeps(this.algorithm);
this.svnUpdater.updateSVNAlgorithmList(this.algorithm, this.targetVREName, this.category,this.algorithm_type, this.algorithm.getFullname(), env); this.svnUpdater.updateSVNProdAlgorithmList(this.algorithm, this.targetVREName, this.category,this.algorithm_type, this.algorithm.getFullname()/*, env*/);
this.getStatus(9); this.getStatus(9);
sm.sendNotification(nh.getSuccessSubjectRelease() + " for "+this.algorithm.getName()+ " algorithm", nh.getSuccessBodyRelease("\n\n"+this.buildInfo())); sm.sendNotification(nh.getSuccessSubjectRelease() + " for "+this.algorithm.getName()+ " algorithm", nh.getSuccessBodyRelease("\n\n"+this.buildInfo()));
return; return;

View File

@ -27,14 +27,14 @@ public class StagingJob extends DMPMJob ***REMOVED***
private Cluster stagingCluster; private Cluster stagingCluster;
***REMOVED*** private Cluster rProtoCluster; ***REMOVED*** private Cluster rProtoCluster;
private String rProtoVREName; private String rProtoVREName;
private String env; ***REMOVED***private String env;
private String category; private String category;
private String algorithm_type; private String algorithm_type;
public StagingJob(SVNUpdater svnUpdater, Algorithm algorithm, public StagingJob(SVNUpdater svnUpdater, Algorithm algorithm,
Cluster stagingCluster, /* Cluster rProtoCluster, */ Cluster stagingCluster, /* Cluster rProtoCluster, */
String rProtoVREName, String category, String algorithm_type, String env) throws FileNotFoundException, UnsupportedEncodingException ***REMOVED*** String rProtoVREName, String category, String algorithm_type/*, String env*/) throws FileNotFoundException, UnsupportedEncodingException ***REMOVED***
super(svnUpdater); super(svnUpdater);
this.jobLogs = new File( this.jobLogs = new File(
System.getProperty("user.home") + File.separator + "dataminer-pool-manager" + File.separator + "jobs"); System.getProperty("user.home") + File.separator + "dataminer-pool-manager" + File.separator + "jobs");
@ -44,7 +44,7 @@ public class StagingJob extends DMPMJob ***REMOVED***
this.stagingCluster = stagingCluster; this.stagingCluster = stagingCluster;
***REMOVED*** this.rProtoCluster = rProtoCluster; ***REMOVED*** this.rProtoCluster = rProtoCluster;
this.rProtoVREName = rProtoVREName; this.rProtoVREName = rProtoVREName;
this.env = env; ***REMOVED***this.env = env;
this.category = category; this.category = category;
this.algorithm_type = algorithm_type; this.algorithm_type = algorithm_type;
@ -66,7 +66,7 @@ public class StagingJob extends DMPMJob ***REMOVED***
try ***REMOVED*** try ***REMOVED***
Collection<String> undefinedDependencies = this.svnUpdater.getUndefinedDependencies( Collection<String> undefinedDependencies = this.svnUpdater.getUndefinedDependencies(
this.svnUpdater.getDependencyFile(this.algorithm.getLanguage(),env), this.svnUpdater.getDependencyFile(this.algorithm.getLanguage()/*,env*/),
this.algorithm.getDependencies()); this.algorithm.getDependencies());
if (!undefinedDependencies.isEmpty()) ***REMOVED*** if (!undefinedDependencies.isEmpty()) ***REMOVED***
@ -82,7 +82,7 @@ public class StagingJob extends DMPMJob ***REMOVED***
***REMOVED*** ***REMOVED***
***REMOVED***before the installation to check if the files exist ***REMOVED***before the installation to check if the files exist
b.deleteFiles(this.algorithm, env);; b.deleteFiles(this.algorithm/*, env*/);;
int ret = this.executeAnsibleWorker(createWorker(this.algorithm, this.stagingCluster, false, "root")); int ret = this.executeAnsibleWorker(createWorker(this.algorithm, this.stagingCluster, false, "root"));
@ -95,18 +95,18 @@ public class StagingJob extends DMPMJob ***REMOVED***
if (ret == 0) ***REMOVED*** if (ret == 0) ***REMOVED***
this.getStatus(0); this.getStatus(0);
System.out.println("1 - Checking existing in env: "+ env); ***REMOVED***System.out.println("1 - Checking existing in env: "+ env);
System.out.println("2 - Checking existing in env: "+ this.env); ***REMOVED***System.out.println("2 - Checking existing in env: "+ this.env);
if (b.checkMethod(a.getHost(env), SecurityTokenProvider.instance.get())&&(b.algoExists(this.algorithm, env))) ***REMOVED*** if (b.checkMethod(a.getStagingHost(), SecurityTokenProvider.instance.get())&&(b.algoExists(this.algorithm/*, env*/))) ***REMOVED***
System.out.println("Interface check ok!"); System.out.println("Interface check ok!");
System.out.println("Both the files exist at the correct path!"); System.out.println("Both the files exist at the correct path!");
this.svnUpdater.updateSVNAlgorithmList(this.algorithm, this.rProtoVREName,this.category, this.algorithm_type, this.svnUpdater.updateSVNStagingAlgorithmList(this.algorithm, this.rProtoVREName,this.category, this.algorithm_type,
this.algorithm.getFullname(), env); this.algorithm.getFullname()/*, env*/);
this.getStatus(9); this.getStatus(9);
sm.sendNotification(nh.getSuccessSubject() + " for "+this.algorithm.getName()+ " algorithm", nh.getSuccessBody("\n\n"+this.buildInfo())); sm.sendNotification(nh.getSuccessSubject() + " for "+this.algorithm.getName()+ " algorithm", nh.getSuccessBody("\n\n"+this.buildInfo()));
@ -163,7 +163,7 @@ public class StagingJob extends DMPMJob ***REMOVED***
"Algorithm details:\n"+"\n"+ "Algorithm details:\n"+"\n"+
"User: "+this.algorithm.getFullname()+"\n"+ "User: "+this.algorithm.getFullname()+"\n"+
"Algorithm name: "+this.algorithm.getName()+"\n"+ "Algorithm name: "+this.algorithm.getName()+"\n"+
"Staging DataMiner Host: "+ a.getHost(this.env)+"\n"+ "Staging DataMiner Host: "+ a.getStagingHost()+"\n"+
"Caller VRE: "+ScopeProvider.instance.get()+"\n"+ "Caller VRE: "+ScopeProvider.instance.get()+"\n"+
"Target VRE: "+rProtoVREName+"\n"; "Target VRE: "+rProtoVREName+"\n";
***REMOVED*** ***REMOVED***

View File

@ -84,8 +84,7 @@ public class CheckMethod ***REMOVED***
public boolean algoExists(Algorithm a, String env) throws Exception***REMOVED*** public boolean algoExists(Algorithm a/*, String env*/) throws Exception***REMOVED***
System.out.println("checking existing in env: "+ env);
File file = new File("/home/gcube/wps_algorithms/algorithms/"+a.getName()+".jar"); File file = new File("/home/gcube/wps_algorithms/algorithms/"+a.getName()+".jar");
File file2 = new File("/home/gcube/wps_algorithms/algorithms/"+a.getName()+"_interface.jar"); File file2 = new File("/home/gcube/wps_algorithms/algorithms/"+a.getName()+"_interface.jar");
@ -95,9 +94,9 @@ public class CheckMethod ***REMOVED***
System.out.println("Second file is located to: "+file2.getPath()); System.out.println("Second file is located to: "+file2.getPath());
if ((this.doesExist(file.getPath(),env)) && (this.doesExist(file2.getPath(),env)))***REMOVED*** if ((this.doesExist(file.getPath()/*,env*/)) && (this.doesExist(file2.getPath()/*,env*/)))***REMOVED***
this.copyFromDmToSVN(file,env); this.copyFromDmToSVN(file/*,env*/);
this.copyFromDmToSVN(file2,env); this.copyFromDmToSVN(file2/*,env*/);
return true; return true;
@ -108,13 +107,13 @@ public class CheckMethod ***REMOVED***
***REMOVED*** ***REMOVED***
public void deleteFiles(Algorithm a,String env) throws Exception***REMOVED*** public void deleteFiles(Algorithm a/*,String env*/) throws Exception***REMOVED***
JSch jsch = new JSch(); JSch jsch = new JSch();
Session session = null; Session session = null;
Channel channel = null; Channel channel = null;
ChannelSftp c = null; ChannelSftp c = null;
ServiceConfiguration p = new ServiceConfiguration(); ServiceConfiguration p = new ServiceConfiguration();
System.out.println("checking existing in env: "+ env + " " + p.getHost(env)); System.out.println("checking existing in env: " + p.getStagingHost());
File file = new File("/home/gcube/wps_algorithms/algorithms/"+a.getName()+".jar"); File file = new File("/home/gcube/wps_algorithms/algorithms/"+a.getName()+".jar");
File file2 = new File("/home/gcube/wps_algorithms/algorithms/"+a.getName()+"_interface.jar"); File file2 = new File("/home/gcube/wps_algorithms/algorithms/"+a.getName()+"_interface.jar");
@ -130,7 +129,7 @@ public class CheckMethod ***REMOVED***
jsch.addIdentity(privateKey); jsch.addIdentity(privateKey);
System.out.println("Private Key Added."); System.out.println("Private Key Added.");
session = jsch.getSession("root", p.getHost(env)); session = jsch.getSession("root", p.getStagingHost());
System.out.println("session created."); System.out.println("session created.");
java.util.Properties config = new java.util.Properties(); java.util.Properties config = new java.util.Properties();
@ -145,7 +144,7 @@ public class CheckMethod ***REMOVED***
c = (ChannelSftp) channel; c = (ChannelSftp) channel;
if(doesExist(file.getPath(),env)&&(doesExist(file2.getPath(),env)))***REMOVED*** if(doesExist(file.getPath()/*,env*/)&&(doesExist(file2.getPath()/*,env*/)))***REMOVED***
c.rm(file.getPath()); c.rm(file.getPath());
c.rm(file2.getPath()); c.rm(file2.getPath());
@ -163,7 +162,7 @@ public class CheckMethod ***REMOVED***
public boolean doesExist(String path, String env) throws Exception ***REMOVED*** public boolean doesExist(String path/*, String env*/) throws Exception ***REMOVED***
JSch jsch = new JSch(); JSch jsch = new JSch();
Session session = null; Session session = null;
Channel channel = null; Channel channel = null;
@ -178,7 +177,7 @@ public class CheckMethod ***REMOVED***
jsch.addIdentity(privateKey); jsch.addIdentity(privateKey);
System.out.println("Private Key Added."); System.out.println("Private Key Added.");
session = jsch.getSession("root", p.getHost(env)); session = jsch.getSession("root", p.getStagingHost());
System.out.println("session created."); System.out.println("session created.");
java.util.Properties config = new java.util.Properties(); java.util.Properties config = new java.util.Properties();
@ -217,7 +216,7 @@ public class CheckMethod ***REMOVED***
public void copyFromDmToSVN(File a,String env) throws Exception ***REMOVED*** public void copyFromDmToSVN(File a/*,String env*/) throws Exception ***REMOVED***
JSch jsch = new JSch(); JSch jsch = new JSch();
Session session = null; Session session = null;
ServiceConfiguration sc = new ServiceConfiguration(); ServiceConfiguration sc = new ServiceConfiguration();
@ -231,7 +230,7 @@ public class CheckMethod ***REMOVED***
jsch.addIdentity(privateKey); jsch.addIdentity(privateKey);
System.out.println("Private Key Added."); System.out.println("Private Key Added.");
session = jsch.getSession("root", p.getHost(env)); session = jsch.getSession("root", p.getStagingHost());
System.out.println("session created."); System.out.println("session created.");
java.util.Properties config = new java.util.Properties(); java.util.Properties config = new java.util.Properties();
@ -304,7 +303,7 @@ public class CheckMethod ***REMOVED***
Algorithm al = new Algorithm(); Algorithm al = new Algorithm();
al.setName("RBLACKBOX"); al.setName("RBLACKBOX");
a.deleteFiles(al, "Dev"); a.deleteFiles(al);

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@ -13,20 +13,22 @@ public class ClusterBuilder ***REMOVED***
***REMOVED***1. to complete ***REMOVED***1. to complete
public static Cluster getStagingDataminerCluster(String env) throws FileNotFoundException***REMOVED*** public static Cluster getStagingDataminerCluster() throws FileNotFoundException***REMOVED***
Cluster cluster = new Cluster(); Cluster cluster = new Cluster();
ServiceConfiguration p = new ServiceConfiguration(); ServiceConfiguration p = new ServiceConfiguration();
Host h = new Host(); Host h = new Host();
h.setName(p.getStagingHost());
cluster.addHost(h);
if (env.equals("Dev"))***REMOVED*** ***REMOVED*** if (env.equals("Dev"))***REMOVED***
h.setName(p.getDevStagingHost()); ***REMOVED*** h.setName(p.getDevStagingHost());
cluster.addHost(h); ***REMOVED*** cluster.addHost(h);
***REMOVED*** ***REMOVED*** ***REMOVED***
***REMOVED***
if ((env.equals("Prod")||(env.equals("Proto"))))***REMOVED*** ***REMOVED*** if ((env.equals("Prod")||(env.equals("Proto"))))***REMOVED***
h.setName(p.getProtoProdStagingHost()); ***REMOVED*** h.setName(p.getProtoProdStagingHost());
cluster.addHost(h); ***REMOVED*** cluster.addHost(h);
***REMOVED*** ***REMOVED*** ***REMOVED***
return cluster; return cluster;
***REMOVED*** ***REMOVED***

View File

@ -50,98 +50,159 @@ public class SVNUpdater ***REMOVED***
public String getDependencyFile(String language, String env)***REMOVED*** public String getDependencyFile(String language/*, String env*/)***REMOVED***
String a = ""; String a = "";
if (env.equals("Dev"))***REMOVED*** ***REMOVED*** if (env.equals("Dev"))***REMOVED***
a= this.getDevDependencyFile(language); ***REMOVED*** a= this.getDevDependencyFile(language);
***REMOVED*** ***REMOVED*** ***REMOVED***
***REMOVED***
if (env.equals("Prod"))***REMOVED*** ***REMOVED*** if (env.equals("Prod"))***REMOVED***
a= this.getProdDependencyFile(language); ***REMOVED*** a= this.getProdDependencyFile(language);
***REMOVED*** ***REMOVED*** ***REMOVED***
***REMOVED***
if (env.equals("Proto"))***REMOVED*** ***REMOVED*** if (env.equals("Proto"))***REMOVED***
a= this.getRProtoDependencyFile(language); ***REMOVED*** a= this.getRProtoDependencyFile(language);
***REMOVED*** ***REMOVED*** ***REMOVED***
***REMOVED***
***REMOVED*** if (env.equals("Preprod"))***REMOVED***
***REMOVED*** a= this.getPreProdDependencyFile(language);
***REMOVED*** ***REMOVED***
a = this.getStagingDependencyFile(language);
return a; return a;
***REMOVED*** ***REMOVED***
public String getRProtoDependencyFile(String language) ***REMOVED*** ***REMOVED*** public String getRProtoDependencyFile(String language) ***REMOVED***
switch (language) ***REMOVED*** ***REMOVED*** switch (language) ***REMOVED***
case "R": ***REMOVED*** case "R":
return this.configuration.getSVNRProtoCRANDepsList(); ***REMOVED*** return this.configuration.getSVNRProtoCRANDepsList();
case "R-blackbox": ***REMOVED*** case "R-blackbox":
return this.configuration.getSVNRProtoRBDepsList(); ***REMOVED*** return this.configuration.getSVNRProtoRBDepsList();
case "Java": ***REMOVED*** case "Java":
return this.configuration.getSVNRProtoJavaDepsList(); ***REMOVED*** return this.configuration.getSVNRProtoJavaDepsList();
case "Knime-Workflow": ***REMOVED*** case "Knime-Workflow":
return this.configuration.getSVNRProtoKWDepsList(); ***REMOVED*** return this.configuration.getSVNRProtoKWDepsList();
case "Linux-compiled": ***REMOVED*** case "Linux-compiled":
return this.configuration.getSVNRProtoLinuxCompiledDepsList(); ***REMOVED*** return this.configuration.getSVNRProtoLinuxCompiledDepsList();
case "Octave": ***REMOVED*** case "Octave":
return this.configuration.getSVNRProtoOctaveDepsList(); ***REMOVED*** return this.configuration.getSVNRProtoOctaveDepsList();
case "Python": ***REMOVED*** case "Python":
return this.configuration.getSVNRProtoPythonDepsList(); ***REMOVED*** return this.configuration.getSVNRProtoPythonDepsList();
case "Pre-Installed": ***REMOVED*** case "Pre-Installed":
return this.configuration.getSVNRProtoPreInstalledDepsList(); ***REMOVED*** return this.configuration.getSVNRProtoPreInstalledDepsList();
case "Windows-compiled": ***REMOVED*** case "Windows-compiled":
return this.configuration.getSVNRProtoWCDepsList(); ***REMOVED*** return this.configuration.getSVNRProtoWCDepsList();
default: ***REMOVED*** default:
***REMOVED*** ***REMOVED*** ***REMOVED***
***REMOVED*** ***REMOVED*** ***REMOVED***
***REMOVED*** ***REMOVED******REMOVED***
public String getProdDependencyFile(String language) ***REMOVED*** ***REMOVED*** public String getPreProdDependencyFile(String language) ***REMOVED***
switch (language) ***REMOVED*** ***REMOVED*** switch (language) ***REMOVED***
case "R": ***REMOVED*** case "R":
return this.configuration.getSVNRProdCRANDepsList(); ***REMOVED*** return this.configuration.getSVNPreProdCRANDepsList();
case "R-blackbox": ***REMOVED*** case "R-blackbox":
return this.configuration.getSVNRProdRBDepsList(); ***REMOVED*** return this.configuration.getSVNPreProdRBDepsList();
case "Java": ***REMOVED*** case "Java":
return this.configuration.getSVNRProdJavaDepsList(); ***REMOVED*** return this.configuration.getSVNPreProdJavaDepsList();
case "Knime-Workflow": ***REMOVED*** case "Knime-Workflow":
return this.configuration.getSVNRProdKWDepsList(); ***REMOVED*** return this.configuration.getSVNPreProdKWDepsList();
case "Linux-compiled": ***REMOVED*** case "Linux-compiled":
return this.configuration.getSVNRProdLinuxCompiledDepsList(); ***REMOVED*** return this.configuration.getSVNPreProdLinuxCompiledDepsList();
case "Octave": ***REMOVED*** case "Octave":
return this.configuration.getSVNRProdOctaveDepsList(); ***REMOVED*** return this.configuration.getSVNPreProdOctaveDepsList();
case "Python": ***REMOVED*** case "Python":
return this.configuration.getSVNRProdPythonDepsList(); ***REMOVED*** return this.configuration.getSVNPreProdPythonDepsList();
case "Pre-Installed": ***REMOVED*** case "Pre-Installed":
return this.configuration.getSVNRProdPreInstalledDepsList(); ***REMOVED*** return this.configuration.getSVNPreProdPreInstalledDepsList();
case "Windows-compiled": ***REMOVED*** case "Windows-compiled":
return this.configuration.getSVNRProdWCDepsList(); ***REMOVED*** return this.configuration.getSVNPreProdWCDepsList();
default: ***REMOVED*** default:
***REMOVED*** ***REMOVED*** ***REMOVED***
***REMOVED*** ***REMOVED*** ***REMOVED***
***REMOVED*** ***REMOVED******REMOVED***
***REMOVED*** public String getProdDependencyFile(String language) ***REMOVED***
***REMOVED*** switch (language) ***REMOVED***
***REMOVED*** case "R":
***REMOVED*** return this.configuration.getSVNProdCRANDepsList();
***REMOVED*** case "R-blackbox":
***REMOVED*** return this.configuration.getSVNProdRBDepsList();
***REMOVED*** case "Java":
***REMOVED*** return this.configuration.getSVNProdJavaDepsList();
***REMOVED*** case "Knime-Workflow":
***REMOVED*** return this.configuration.getSVNProdKWDepsList();
***REMOVED*** case "Linux-compiled":
***REMOVED*** return this.configuration.getSVNProdLinuxCompiledDepsList();
***REMOVED*** case "Octave":
***REMOVED*** return this.configuration.getSVNProdOctaveDepsList();
***REMOVED*** case "Python":
***REMOVED*** return this.configuration.getSVNProdPythonDepsList();
***REMOVED*** case "Pre-Installed":
***REMOVED*** return this.configuration.getSVNProdPreInstalledDepsList();
***REMOVED*** case "Windows-compiled":
***REMOVED*** return this.configuration.getSVNProdWCDepsList();
***REMOVED*** default:
***REMOVED*** ***REMOVED***
***REMOVED*** ***REMOVED***
***REMOVED******REMOVED***
public String getDevDependencyFile(String language) ***REMOVED*** ***REMOVED*** public String getDevDependencyFile(String language) ***REMOVED***
***REMOVED*** switch (language) ***REMOVED***
***REMOVED*** case "R":
***REMOVED*** return this.configuration.getSVNDevCRANDepsList();
***REMOVED*** case "R-blackbox":
***REMOVED*** return this.configuration.getSVNDevRBDepsList();
***REMOVED*** case "Java":
***REMOVED*** return this.configuration.getSVNDevJavaDepsList();
***REMOVED*** case "Knime-Workflow":
***REMOVED*** return this.configuration.getSVNDevKWDepsList();
***REMOVED*** case "Linux-compiled":
***REMOVED*** return this.configuration.getSVNDevLinuxCompiledDepsList();
***REMOVED*** case "Octave":
***REMOVED*** return this.configuration.getSVNDevOctaveDepsList();
***REMOVED*** case "Python":
***REMOVED*** return this.configuration.getSVNDevPythonDepsList();
***REMOVED*** case "Pre-Installed":
***REMOVED*** return this.configuration.getSVNDevPreInstalledDepsList();
***REMOVED*** case "Windows-compiled":
***REMOVED*** return this.configuration.getSVNDevWCDepsList();
***REMOVED*** default:
***REMOVED*** ***REMOVED***
***REMOVED*** ***REMOVED***
***REMOVED******REMOVED***
***REMOVED***
public String getStagingDependencyFile(String language) ***REMOVED***
switch (language) ***REMOVED*** switch (language) ***REMOVED***
case "R": case "R":
return this.configuration.getSVNRDevCRANDepsList(); return this.configuration.getSVNStagingCRANDepsList();
case "R-blackbox": case "R-blackbox":
return this.configuration.getSVNRDevRBDepsList(); return this.configuration.getSVNStagingRBDepsList();
case "Java": case "Java":
return this.configuration.getSVNRDevJavaDepsList(); return this.configuration.getSVNStagingJavaDepsList();
case "Knime-Workflow": case "Knime-Workflow":
return this.configuration.getSVNRDevKWDepsList(); return this.configuration.getSVNStagingKWDepsList();
case "Linux-compiled": case "Linux-compiled":
return this.configuration.getSVNRDevLinuxCompiledDepsList(); return this.configuration.getSVNStagingLinuxCompiledDepsList();
case "Octave": case "Octave":
return this.configuration.getSVNRDevOctaveDepsList(); return this.configuration.getSVNStagingOctaveDepsList();
case "Python": case "Python":
return this.configuration.getSVNRDevPythonDepsList(); return this.configuration.getSVNStagingPythonDepsList();
case "Pre-Installed": case "Pre-Installed":
return this.configuration.getSVNRDevPreInstalledDepsList(); return this.configuration.getSVNStagingPreInstalledDepsList();
case "Windows-compiled": case "Windows-compiled":
return this.configuration.getSVNRDevWCDepsList(); return this.configuration.getSVNStagingWCDepsList();
default: default:
***REMOVED*** ***REMOVED***
***REMOVED*** ***REMOVED***
@ -151,98 +212,129 @@ public class SVNUpdater ***REMOVED***
***REMOVED*** public void readPreProdDeps(Algorithm algorithm) throws SVNException ***REMOVED***
public void readRPRotoDeps(Algorithm algorithm) throws SVNException ***REMOVED*** ***REMOVED*** if (algorithm.getLanguage().equals("R")) ***REMOVED***
if (algorithm.getLanguage().equals("R")) ***REMOVED*** ***REMOVED*** this.checkIfAvaialable(this.configuration.getSVNRProtoCRANDepsList(), algorithm.getDependencies());
this.checkIfAvaialable(this.configuration.getSVNRProtoCRANDepsList(), algorithm.getDependencies()); ***REMOVED*** ***REMOVED***
***REMOVED*** ***REMOVED*** if (algorithm.getLanguage().equals("R-blackbox")) ***REMOVED***
if (algorithm.getLanguage().equals("R-blackbox")) ***REMOVED*** ***REMOVED*** this.checkIfAvaialable("", algorithm.getDependencies());
this.checkIfAvaialable("", algorithm.getDependencies()); ***REMOVED*** ***REMOVED***
***REMOVED*** ***REMOVED*** if (algorithm.getLanguage().equals("Java")) ***REMOVED***
if (algorithm.getLanguage().equals("Java")) ***REMOVED*** ***REMOVED*** this.checkIfAvaialable("", algorithm.getDependencies());
this.checkIfAvaialable("", algorithm.getDependencies()); ***REMOVED*** ***REMOVED***
***REMOVED*** ***REMOVED*** if (algorithm.getLanguage().equals("Knime-Workflow")) ***REMOVED***
if (algorithm.getLanguage().equals("Knime-Workflow")) ***REMOVED*** ***REMOVED*** this.checkIfAvaialable(this.configuration.getSVNRProtoCRANDepsList(), algorithm.getDependencies());
this.checkIfAvaialable(this.configuration.getSVNRProtoCRANDepsList(), algorithm.getDependencies()); ***REMOVED*** ***REMOVED***
***REMOVED*** ***REMOVED*** if (algorithm.getLanguage().equals("Linux-compiled")) ***REMOVED***
if (algorithm.getLanguage().equals("Linux-compiled")) ***REMOVED*** ***REMOVED*** this.checkIfAvaialable("", algorithm.getDependencies());
this.checkIfAvaialable("", algorithm.getDependencies()); ***REMOVED*** ***REMOVED***
***REMOVED*** ***REMOVED*** if (algorithm.getLanguage().equals("Octave")) ***REMOVED***
if (algorithm.getLanguage().equals("Octave")) ***REMOVED*** ***REMOVED*** this.checkIfAvaialable("", algorithm.getDependencies());
this.checkIfAvaialable("", algorithm.getDependencies()); ***REMOVED*** ***REMOVED***
***REMOVED*** ***REMOVED*** if (algorithm.getLanguage().equals("Python")) ***REMOVED***
if (algorithm.getLanguage().equals("Python")) ***REMOVED*** ***REMOVED*** this.checkIfAvaialable("", algorithm.getDependencies());
this.checkIfAvaialable("", algorithm.getDependencies()); ***REMOVED*** ***REMOVED***
***REMOVED*** ***REMOVED*** if (algorithm.getLanguage().equals("Windows-compiled")) ***REMOVED***
if (algorithm.getLanguage().equals("Windows-compiled")) ***REMOVED*** ***REMOVED*** this.checkIfAvaialable("", algorithm.getDependencies());
this.checkIfAvaialable("", algorithm.getDependencies()); ***REMOVED*** ***REMOVED***
***REMOVED*** ***REMOVED*** if (algorithm.getLanguage().equals("Pre-Installed")) ***REMOVED***
if (algorithm.getLanguage().equals("Pre-Installed")) ***REMOVED*** ***REMOVED*** this.checkIfAvaialable("", algorithm.getDependencies());
this.checkIfAvaialable("", algorithm.getDependencies()); ***REMOVED*** ***REMOVED***
***REMOVED*** ***REMOVED******REMOVED***
***REMOVED***
***REMOVED*** ***REMOVED***
public void readProdDeps(Algorithm algorithm) throws SVNException ***REMOVED***
if (algorithm.getLanguage().equals("R")) ***REMOVED***
this.checkIfAvaialable(this.configuration.getSVNRProdCRANDepsList(), algorithm.getDependencies());
***REMOVED***
if (algorithm.getLanguage().equals("R-blackbox")) ***REMOVED***
this.checkIfAvaialable("", algorithm.getDependencies());
***REMOVED***
if (algorithm.getLanguage().equals("Java")) ***REMOVED***
this.checkIfAvaialable("", algorithm.getDependencies());
***REMOVED***
if (algorithm.getLanguage().equals("Knime-Workflow")) ***REMOVED***
this.checkIfAvaialable("", algorithm.getDependencies());
***REMOVED***
if (algorithm.getLanguage().equals("Linux-compiled")) ***REMOVED***
this.checkIfAvaialable("", algorithm.getDependencies());
***REMOVED***
if (algorithm.getLanguage().equals("Octave")) ***REMOVED***
this.checkIfAvaialable("", algorithm.getDependencies());
***REMOVED***
if (algorithm.getLanguage().equals("Python")) ***REMOVED***
this.checkIfAvaialable("", algorithm.getDependencies());
***REMOVED***
if (algorithm.getLanguage().equals("Windows-compiled")) ***REMOVED***
this.checkIfAvaialable("", algorithm.getDependencies());
***REMOVED***
if (algorithm.getLanguage().equals("Pre-Installed")) ***REMOVED***
this.checkIfAvaialable("", algorithm.getDependencies());
***REMOVED***
***REMOVED*** ***REMOVED***
***REMOVED*** public void readRPRotoDeps(Algorithm algorithm) throws SVNException ***REMOVED***
***REMOVED*** if (algorithm.getLanguage().equals("R")) ***REMOVED***
***REMOVED*** this.checkIfAvaialable(this.configuration.getSVNRProtoCRANDepsList(), algorithm.getDependencies());
public void readRDevDeps(Algorithm algorithm) throws SVNException ***REMOVED*** ***REMOVED*** ***REMOVED***
if (algorithm.getLanguage().equals("R")) ***REMOVED*** ***REMOVED*** if (algorithm.getLanguage().equals("R-blackbox")) ***REMOVED***
this.checkIfAvaialable(this.configuration.getSVNRProtoCRANDepsList(), algorithm.getDependencies()); ***REMOVED*** this.checkIfAvaialable("", algorithm.getDependencies());
***REMOVED*** ***REMOVED*** ***REMOVED***
if (algorithm.getLanguage().equals("R-blackbox")) ***REMOVED*** ***REMOVED*** if (algorithm.getLanguage().equals("Java")) ***REMOVED***
this.checkIfAvaialable("", algorithm.getDependencies()); ***REMOVED*** this.checkIfAvaialable("", algorithm.getDependencies());
***REMOVED*** ***REMOVED*** ***REMOVED***
if (algorithm.getLanguage().equals("Java")) ***REMOVED*** ***REMOVED*** if (algorithm.getLanguage().equals("Knime-Workflow")) ***REMOVED***
this.checkIfAvaialable("", algorithm.getDependencies()); ***REMOVED*** this.checkIfAvaialable(this.configuration.getSVNRProtoCRANDepsList(), algorithm.getDependencies());
***REMOVED*** ***REMOVED*** ***REMOVED***
if (algorithm.getLanguage().equals("Knime-Workflow")) ***REMOVED*** ***REMOVED*** if (algorithm.getLanguage().equals("Linux-compiled")) ***REMOVED***
this.checkIfAvaialable(this.configuration.getSVNRProtoCRANDepsList(), algorithm.getDependencies()); ***REMOVED*** this.checkIfAvaialable("", algorithm.getDependencies());
***REMOVED*** ***REMOVED*** ***REMOVED***
if (algorithm.getLanguage().equals("Linux-compiled")) ***REMOVED*** ***REMOVED*** if (algorithm.getLanguage().equals("Octave")) ***REMOVED***
this.checkIfAvaialable("", algorithm.getDependencies()); ***REMOVED*** this.checkIfAvaialable("", algorithm.getDependencies());
***REMOVED*** ***REMOVED*** ***REMOVED***
if (algorithm.getLanguage().equals("Octave")) ***REMOVED*** ***REMOVED*** if (algorithm.getLanguage().equals("Python")) ***REMOVED***
this.checkIfAvaialable("", algorithm.getDependencies()); ***REMOVED*** this.checkIfAvaialable("", algorithm.getDependencies());
***REMOVED*** ***REMOVED*** ***REMOVED***
if (algorithm.getLanguage().equals("Python")) ***REMOVED*** ***REMOVED*** if (algorithm.getLanguage().equals("Windows-compiled")) ***REMOVED***
this.checkIfAvaialable("", algorithm.getDependencies()); ***REMOVED*** this.checkIfAvaialable("", algorithm.getDependencies());
***REMOVED*** ***REMOVED*** ***REMOVED***
if (algorithm.getLanguage().equals("Windows-compiled")) ***REMOVED*** ***REMOVED*** if (algorithm.getLanguage().equals("Pre-Installed")) ***REMOVED***
this.checkIfAvaialable("", algorithm.getDependencies()); ***REMOVED*** this.checkIfAvaialable("", algorithm.getDependencies());
***REMOVED*** ***REMOVED*** ***REMOVED***
if (algorithm.getLanguage().equals("Pre-Installed")) ***REMOVED*** ***REMOVED******REMOVED***
this.checkIfAvaialable("", algorithm.getDependencies());
***REMOVED***
***REMOVED*** ***REMOVED***
***REMOVED*** public void readProdDeps(Algorithm algorithm) throws SVNException ***REMOVED***
***REMOVED*** if (algorithm.getLanguage().equals("R")) ***REMOVED***
***REMOVED*** this.checkIfAvaialable(this.configuration.getSVNProdCRANDepsList(), algorithm.getDependencies());
***REMOVED*** ***REMOVED***
***REMOVED*** if (algorithm.getLanguage().equals("R-blackbox")) ***REMOVED***
***REMOVED*** this.checkIfAvaialable("", algorithm.getDependencies());
***REMOVED*** ***REMOVED***
***REMOVED*** if (algorithm.getLanguage().equals("Java")) ***REMOVED***
***REMOVED*** this.checkIfAvaialable("", algorithm.getDependencies());
***REMOVED*** ***REMOVED***
***REMOVED*** if (algorithm.getLanguage().equals("Knime-Workflow")) ***REMOVED***
***REMOVED*** this.checkIfAvaialable("", algorithm.getDependencies());
***REMOVED*** ***REMOVED***
***REMOVED*** if (algorithm.getLanguage().equals("Linux-compiled")) ***REMOVED***
***REMOVED*** this.checkIfAvaialable("", algorithm.getDependencies());
***REMOVED*** ***REMOVED***
***REMOVED*** if (algorithm.getLanguage().equals("Octave")) ***REMOVED***
***REMOVED*** this.checkIfAvaialable("", algorithm.getDependencies());
***REMOVED*** ***REMOVED***
***REMOVED*** if (algorithm.getLanguage().equals("Python")) ***REMOVED***
***REMOVED*** this.checkIfAvaialable("", algorithm.getDependencies());
***REMOVED*** ***REMOVED***
***REMOVED*** if (algorithm.getLanguage().equals("Windows-compiled")) ***REMOVED***
***REMOVED*** this.checkIfAvaialable("", algorithm.getDependencies());
***REMOVED*** ***REMOVED***
***REMOVED*** if (algorithm.getLanguage().equals("Pre-Installed")) ***REMOVED***
***REMOVED*** this.checkIfAvaialable("", algorithm.getDependencies());
***REMOVED*** ***REMOVED***
***REMOVED******REMOVED***
***REMOVED***
***REMOVED***
***REMOVED***
***REMOVED*** public void readRDevDeps(Algorithm algorithm) throws SVNException ***REMOVED***
***REMOVED*** if (algorithm.getLanguage().equals("R")) ***REMOVED***
***REMOVED*** this.checkIfAvaialable(this.configuration.getSVNRProtoCRANDepsList(), algorithm.getDependencies());
***REMOVED*** ***REMOVED***
***REMOVED*** if (algorithm.getLanguage().equals("R-blackbox")) ***REMOVED***
***REMOVED*** this.checkIfAvaialable("", algorithm.getDependencies());
***REMOVED*** ***REMOVED***
***REMOVED*** if (algorithm.getLanguage().equals("Java")) ***REMOVED***
***REMOVED*** this.checkIfAvaialable("", algorithm.getDependencies());
***REMOVED*** ***REMOVED***
***REMOVED*** if (algorithm.getLanguage().equals("Knime-Workflow")) ***REMOVED***
***REMOVED*** this.checkIfAvaialable(this.configuration.getSVNRProtoCRANDepsList(), algorithm.getDependencies());
***REMOVED*** ***REMOVED***
***REMOVED*** if (algorithm.getLanguage().equals("Linux-compiled")) ***REMOVED***
***REMOVED*** this.checkIfAvaialable("", algorithm.getDependencies());
***REMOVED*** ***REMOVED***
***REMOVED*** if (algorithm.getLanguage().equals("Octave")) ***REMOVED***
***REMOVED*** this.checkIfAvaialable("", algorithm.getDependencies());
***REMOVED*** ***REMOVED***
***REMOVED*** if (algorithm.getLanguage().equals("Python")) ***REMOVED***
***REMOVED*** this.checkIfAvaialable("", algorithm.getDependencies());
***REMOVED*** ***REMOVED***
***REMOVED*** if (algorithm.getLanguage().equals("Windows-compiled")) ***REMOVED***
***REMOVED*** this.checkIfAvaialable("", algorithm.getDependencies());
***REMOVED*** ***REMOVED***
***REMOVED*** if (algorithm.getLanguage().equals("Pre-Installed")) ***REMOVED***
***REMOVED*** this.checkIfAvaialable("", algorithm.getDependencies());
***REMOVED*** ***REMOVED***
***REMOVED******REMOVED***
@ -255,23 +347,31 @@ public class SVNUpdater ***REMOVED***
***REMOVED*** this.updateSVN(this.configuration.getSVNRProdGitHubDepsList(), algorithm.getGitHubDependencies()); ***REMOVED*** this.updateSVN(this.configuration.getSVNRProdGitHubDepsList(), algorithm.getGitHubDependencies());
***REMOVED******REMOVED*** ***REMOVED******REMOVED***
public void updateSVNAlgorithmList(Algorithm algorithm, String targetVRE, String category, String algorithm_type, String user, String env) ***REMOVED*** ***REMOVED*** public void updateSVNAlgorithmList(Algorithm algorithm, String targetVRE, String category, String algorithm_type, String user/*, String env*/) ***REMOVED***
***REMOVED***
if (env.equals("Dev"))***REMOVED*** ***REMOVED*** if (env.equals("Dev"))***REMOVED***
this.updateSVNAlgorithmList(this.configuration.getSVNDevAlgorithmsList(), algorithm, targetVRE, category,algorithm_type, user, env); ***REMOVED*** this.updateSVNAlgorithmList(this.configuration.getSVNDevAlgorithmsList(), algorithm, targetVRE, category,algorithm_type, user, env);
***REMOVED*** ***REMOVED*** ***REMOVED***
***REMOVED***
if (env.equals("Prod"))***REMOVED*** ***REMOVED*** if (env.equals("Prod"))***REMOVED***
this.updateSVNAlgorithmList(this.configuration.getSVNProdAlgorithmsList(), algorithm, targetVRE, category, algorithm_type, user, env); ***REMOVED*** this.updateSVNAlgorithmList(this.configuration.getSVNProdAlgorithmsList(), algorithm, targetVRE, category, algorithm_type, user, env);
***REMOVED*** ***REMOVED*** ***REMOVED***
***REMOVED***
if (env.equals("Proto"))***REMOVED*** ***REMOVED*** if (env.equals("Proto"))***REMOVED***
this.updateSVNAlgorithmList(this.configuration.getSVNRProtoAlgorithmsList(), algorithm, targetVRE, category, algorithm_type, user, env); ***REMOVED*** this.updateSVNAlgorithmList(this.configuration.getSVNRProtoAlgorithmsList(), algorithm, targetVRE, category, algorithm_type, user, env);
***REMOVED*** ***REMOVED*** ***REMOVED***
***REMOVED*** ***REMOVED***
***REMOVED*** if (env.equals("Preprod"))***REMOVED***
***REMOVED*** this.updateSVNAlgorithmList(this.configuration.getSVNPreProdAlgorithmsList(), algorithm, targetVRE, category, algorithm_type, user, env);
***REMOVED*** ***REMOVED***
***REMOVED******REMOVED***
public void updateSVNProdAlgorithmList(Algorithm algorithm, String targetVRE, String category, String algorithm_type, String user, String env) ***REMOVED*** public void updateSVNStagingAlgorithmList(Algorithm algorithm, String targetVRE, String category, String algorithm_type, String user/*, String env*/) ***REMOVED***
this.updateSVNAlgorithmList(this.configuration.getSVNProdAlgorithmsList(), algorithm, targetVRE, category, algorithm_type, user, env); this.updateSVNAlgorithmList(this.configuration.getSVNStagingAlgorithmsList(), algorithm, targetVRE, category, algorithm_type, user);
***REMOVED***
public void updateSVNProdAlgorithmList(Algorithm algorithm, String targetVRE, String category, String algorithm_type, String user/*, String env*/) ***REMOVED***
this.updateSVNAlgorithmList(this.configuration.getSVNProdAlgorithmsList(), algorithm, targetVRE, category, algorithm_type, user);
***REMOVED*** ***REMOVED***
@ -377,7 +477,7 @@ public class SVNUpdater ***REMOVED***
***REMOVED*** ***REMOVED***
public void updateSVNAlgorithmList(String file, Algorithm algorithm, String targetVRE, String category, String algorithm_type, String user, String env) ***REMOVED*** public void updateSVNAlgorithmList(String file, Algorithm algorithm, String targetVRE, String category, String algorithm_type, String user/*, String env*/) ***REMOVED***
try ***REMOVED*** try ***REMOVED***
System.out.println("Updating algorithm list: " + file); System.out.println("Updating algorithm list: " + file);
final ByteArrayOutputStream byteArrayOutputStream = new ByteArrayOutputStream(); final ByteArrayOutputStream byteArrayOutputStream = new ByteArrayOutputStream();
@ -397,7 +497,7 @@ public class SVNUpdater ***REMOVED***
***REMOVED*** ***REMOVED***
***REMOVED*** the algorithm is not in the list or must be overwritten cause some modification. Add it ***REMOVED*** the algorithm is not in the list or must be overwritten cause some modification. Add it
newContent.add(this.generateAlgorithmEntry(algorithm, targetVRE, category,algorithm_type, env)); newContent.add(this.generateAlgorithmEntry(algorithm, targetVRE, category,algorithm_type/*, env*/));
***REMOVED*** Collections.sort(newContent); ***REMOVED*** Collections.sort(newContent);
final SVNDeltaGenerator deltaGenerator = new SVNDeltaGenerator(); final SVNDeltaGenerator deltaGenerator = new SVNDeltaGenerator();
@ -432,7 +532,7 @@ public class SVNUpdater ***REMOVED***
***REMOVED*** ***REMOVED***
***REMOVED*** ***REMOVED***
public String generateAlgorithmEntry(Algorithm algorithm, String targetVRE, String category, String algorithm_type,String env) throws ParseException ***REMOVED*** public String generateAlgorithmEntry(Algorithm algorithm, String targetVRE, String category, String algorithm_type/*,String env*/) throws ParseException ***REMOVED***
***REMOVED***Timestamp timestamp = new Timestamp(System.currentTimeMillis()); ***REMOVED***Timestamp timestamp = new Timestamp(System.currentTimeMillis());
***REMOVED***long unixTime = System.currentTimeMillis() / 1000L; ***REMOVED***long unixTime = System.currentTimeMillis() / 1000L;
@ -440,7 +540,7 @@ public class SVNUpdater ***REMOVED***
sb.append(algorithm.getName() + " | "); sb.append(algorithm.getName() + " | ");
sb.append(algorithm.getFullname() + " | "); sb.append(algorithm.getFullname() + " | ");
sb.append(category + " | "); sb.append(category + " | ");
sb.append(env + " | "); ***REMOVED***sb.append(env + " | ");
sb.append("<notextile>./addAlgorithm.sh " + algorithm.getName() + " " + algorithm.getCategory() + " " sb.append("<notextile>./addAlgorithm.sh " + algorithm.getName() + " " + algorithm.getCategory() + " "
+ algorithm.getClazz() + " " + targetVRE + " " + algorithm_type + " N " + algorithm.getClazz() + " " + targetVRE + " " + algorithm_type + " N "
+ algorithm.getPackageURL() + " \"" + algorithm.getDescription() + "\" </notextile> | "); + algorithm.getPackageURL() + " \"" + algorithm.getDescription() + "\" </notextile> | ");
@ -454,6 +554,15 @@ public class SVNUpdater ***REMOVED***
***REMOVED*** SendMail sm = new SendMail(); ***REMOVED*** SendMail sm = new SendMail();
***REMOVED*** NotificationHelper nh = new NotificationHelper(); ***REMOVED*** NotificationHelper nh = new NotificationHelper();
List<String> undefined = new LinkedList<String>();
***REMOVED***to fix in next release: if the file is not present for that language in the service.properties then skip and return null list of string
***REMOVED***just to uncomment the following lines
***REMOVED***if(file.isEmpty())***REMOVED***
***REMOVED***return undefined;
***REMOVED******REMOVED***
System.out.println("Checking dependencies list: " + file); System.out.println("Checking dependencies list: " + file);
final ByteArrayOutputStream byteArrayOutputStream = new ByteArrayOutputStream(); final ByteArrayOutputStream byteArrayOutputStream = new ByteArrayOutputStream();
@ -464,10 +573,6 @@ public class SVNUpdater ***REMOVED***
validDependencies.add(l.trim()); validDependencies.add(l.trim());
***REMOVED*** ***REMOVED***
List<String> undefined = new LinkedList<String>();
for(Dependency d: deps)***REMOVED*** for(Dependency d: deps)***REMOVED***
String depName = d.getName(); String depName = d.getName();
if(!validDependencies.contains(depName))***REMOVED*** if(!validDependencies.contains(depName))***REMOVED***

View File

@ -48,45 +48,45 @@ public class ServiceConfiguration ***REMOVED***
***REMOVED***RProto ***REMOVED***RProto
public String getSVNRProtoAlgorithmsList()***REMOVED*** ***REMOVED*** public String getSVNRProtoAlgorithmsList()***REMOVED***
return props.getProperty("svn.rproto.algorithms-list"); ***REMOVED*** return props.getProperty("svn.rproto.algorithms-list");
***REMOVED******REMOVED***
***REMOVED*** ***REMOVED***
***REMOVED*** public String getSVNRProtoLinuxCompiledDepsList()***REMOVED***
public String getSVNRProtoLinuxCompiledDepsList()***REMOVED*** ***REMOVED*** return props.getProperty("svn.rproto.deps-linux-compiled");
return props.getProperty("svn.rproto.deps-linux-compiled"); ***REMOVED******REMOVED***
***REMOVED*** ***REMOVED***
***REMOVED*** public String getSVNRProtoCRANDepsList()***REMOVED***
public String getSVNRProtoCRANDepsList()***REMOVED*** ***REMOVED*** return props.getProperty("svn.rproto.deps-r");
return props.getProperty("svn.rproto.deps-r"); ***REMOVED******REMOVED***
***REMOVED***
public String getSVNRProtoPreInstalledDepsList()***REMOVED***
return props.getProperty("svn.rproto.deps-pre-installed");
***REMOVED***
public String getSVNRProtoRBDepsList()***REMOVED***
return props.getProperty("svn.rproto.deps-r-blackbox");
***REMOVED***
public String getSVNRProtoJavaDepsList()***REMOVED***
return props.getProperty("svn.rproto.deps-java");
***REMOVED***
public String getSVNRProtoKWDepsList()***REMOVED***
return props.getProperty("svn.rproto.deps-knime-workflow");
***REMOVED***
public String getSVNRProtoOctaveDepsList()***REMOVED***
return props.getProperty("svn.rproto.deps-octave");
***REMOVED***
public String getSVNRProtoPythonDepsList()***REMOVED***
return props.getProperty("svn.rproto.deps-python");
***REMOVED***
public String getSVNRProtoWCDepsList()***REMOVED***
return props.getProperty("svn.rproto.deps-windows-compiled");
***REMOVED*** ***REMOVED***
***REMOVED*** public String getSVNRProtoPreInstalledDepsList()***REMOVED***
***REMOVED*** return props.getProperty("svn.rproto.deps-pre-installed");
***REMOVED******REMOVED***
***REMOVED***
***REMOVED*** public String getSVNRProtoRBDepsList()***REMOVED***
***REMOVED*** return props.getProperty("svn.rproto.deps-r-blackbox");
***REMOVED******REMOVED***
***REMOVED***
***REMOVED*** public String getSVNRProtoJavaDepsList()***REMOVED***
***REMOVED*** return props.getProperty("svn.rproto.deps-java");
***REMOVED******REMOVED***
***REMOVED***
***REMOVED*** public String getSVNRProtoKWDepsList()***REMOVED***
***REMOVED*** return props.getProperty("svn.rproto.deps-knime-workflow");
***REMOVED******REMOVED***
***REMOVED***
***REMOVED*** public String getSVNRProtoOctaveDepsList()***REMOVED***
***REMOVED*** return props.getProperty("svn.rproto.deps-octave");
***REMOVED******REMOVED***
***REMOVED***
***REMOVED*** public String getSVNRProtoPythonDepsList()***REMOVED***
***REMOVED*** return props.getProperty("svn.rproto.deps-python");
***REMOVED******REMOVED***
***REMOVED***
***REMOVED*** public String getSVNRProtoWCDepsList()***REMOVED***
***REMOVED*** return props.getProperty("svn.rproto.deps-windows-compiled");
***REMOVED******REMOVED***
***REMOVED***Prod ***REMOVED***Prod
@ -94,131 +94,223 @@ public class ServiceConfiguration ***REMOVED***
return props.getProperty("svn.prod.algorithms-list"); return props.getProperty("svn.prod.algorithms-list");
***REMOVED*** ***REMOVED***
public String getSVNRProdLinuxCompiledDepsList()***REMOVED*** ***REMOVED*** public String getSVNProdLinuxCompiledDepsList()***REMOVED***
return props.getProperty("svn.prod.deps-linux-compiled"); ***REMOVED*** return props.getProperty("svn.prod.deps-linux-compiled");
***REMOVED******REMOVED***
***REMOVED*** ***REMOVED***
***REMOVED*** public String getSVNProdCRANDepsList()***REMOVED***
public String getSVNRProdCRANDepsList()***REMOVED*** ***REMOVED*** return props.getProperty("svn.prod.deps-r");
return props.getProperty("svn.prod.deps-r"); ***REMOVED******REMOVED***
***REMOVED***
public String getSVNRProdPreInstalledDepsList()***REMOVED***
return props.getProperty("svn.prod.deps-pre-installed");
***REMOVED*** ***REMOVED***
***REMOVED*** public String getSVNProdPreInstalledDepsList()***REMOVED***
***REMOVED*** return props.getProperty("svn.prod.deps-pre-installed");
***REMOVED******REMOVED***
***REMOVED***
***REMOVED*** public String getSVNProdRBDepsList()***REMOVED***
***REMOVED*** return props.getProperty("svn.prod.deps-r-blackbox");
***REMOVED******REMOVED***
***REMOVED***
***REMOVED*** public String getSVNProdJavaDepsList()***REMOVED***
***REMOVED*** return props.getProperty("svn.prod.deps-java");
***REMOVED******REMOVED***
***REMOVED***
***REMOVED*** public String getSVNProdKWDepsList()***REMOVED***
***REMOVED*** return props.getProperty("svn.prod.deps-knime-workflow");
***REMOVED******REMOVED***
***REMOVED***
***REMOVED*** public String getSVNProdOctaveDepsList()***REMOVED***
***REMOVED*** return props.getProperty("svn.prod.deps-octave");
***REMOVED******REMOVED***
***REMOVED***
***REMOVED*** public String getSVNProdPythonDepsList()***REMOVED***
***REMOVED*** return props.getProperty("svn.prod.deps-python");
***REMOVED******REMOVED***
***REMOVED***
***REMOVED*** public String getSVNProdWCDepsList()***REMOVED***
***REMOVED*** return props.getProperty("svn.prod.deps-windows-compiled");
***REMOVED******REMOVED***
***REMOVED***
public String getSVNRProdRBDepsList()***REMOVED***
return props.getProperty("svn.prod.deps-r-blackbox");
***REMOVED***
public String getSVNRProdJavaDepsList()***REMOVED*** ***REMOVED***PreProd
return props.getProperty("svn.prod.deps-java"); ***REMOVED*** public String getSVNPreProdAlgorithmsList()***REMOVED***
***REMOVED*** return props.getProperty("svn.preprod.algorithms-list");
***REMOVED*** ***REMOVED***
***REMOVED*** ***REMOVED***
***REMOVED*** public String getSVNPreProdLinuxCompiledDepsList()***REMOVED***
public String getSVNRProdKWDepsList()***REMOVED*** ***REMOVED*** return props.getProperty("svn.preprod.deps-linux-compiled");
return props.getProperty("svn.prod.deps-knime-workflow"); ***REMOVED*** ***REMOVED***
***REMOVED*** ***REMOVED***
***REMOVED*** public String getSVNPreProdCRANDepsList()***REMOVED***
public String getSVNRProdOctaveDepsList()***REMOVED*** ***REMOVED*** return props.getProperty("svn.preprod.deps-r");
return props.getProperty("svn.prod.deps-octave"); ***REMOVED*** ***REMOVED***
***REMOVED*** ***REMOVED***
***REMOVED*** public String getSVNPreProdPreInstalledDepsList()***REMOVED***
public String getSVNRProdPythonDepsList()***REMOVED*** ***REMOVED*** return props.getProperty("svn.preprod.deps-pre-installed");
return props.getProperty("svn.prod.deps-python"); ***REMOVED*** ***REMOVED***
***REMOVED*** ***REMOVED***
***REMOVED*** public String getSVNPreProdRBDepsList()***REMOVED***
public String getSVNRProdWCDepsList()***REMOVED*** ***REMOVED*** return props.getProperty("svn.preprod.deps-r-blackbox");
return props.getProperty("svn.prod.deps-windows-compiled"); ***REMOVED*** ***REMOVED***
***REMOVED*** ***REMOVED***
***REMOVED*** public String getSVNPreProdJavaDepsList()***REMOVED***
***REMOVED*** return props.getProperty("svn.preprod.deps-java");
***REMOVED*** ***REMOVED***
***REMOVED***
***REMOVED*** public String getSVNPreProdKWDepsList()***REMOVED***
***REMOVED*** return props.getProperty("svn.preprod.deps-knime-workflow");
***REMOVED*** ***REMOVED***
***REMOVED***
***REMOVED*** public String getSVNPreProdOctaveDepsList()***REMOVED***
***REMOVED*** return props.getProperty("svn.preprod.deps-octave");
***REMOVED*** ***REMOVED***
***REMOVED***
***REMOVED*** public String getSVNPreProdPythonDepsList()***REMOVED***
***REMOVED*** return props.getProperty("svn.preprod.deps-python");
***REMOVED*** ***REMOVED***
***REMOVED***
***REMOVED*** public String getSVNPreProdWCDepsList()***REMOVED***
***REMOVED*** return props.getProperty("svn.preprod.deps-windows-compiled");
***REMOVED*** ***REMOVED***
***REMOVED***dev ***REMOVED***dev
public String getSVNDevAlgorithmsList()***REMOVED*** ***REMOVED*** public String getSVNDevAlgorithmsList()***REMOVED***
return props.getProperty("svn.dev.algorithms-list"); ***REMOVED*** return props.getProperty("svn.dev.algorithms-list");
***REMOVED*** ***REMOVED*** ***REMOVED***
public String getSVNRDevLinuxCompiledDepsList()***REMOVED***
return props.getProperty("svn.dev.deps-linux-compiled");
***REMOVED***
public String getSVNRDevCRANDepsList()***REMOVED***
return props.getProperty("svn.dev.deps-r");
***REMOVED***
public String getSVNRDevPreInstalledDepsList()***REMOVED***
return props.getProperty("svn.dev.deps-pre-installed");
***REMOVED***
public String getSVNRDevRBDepsList()***REMOVED***
return props.getProperty("svn.dev.deps-r-blackbox");
***REMOVED***
public String getSVNRDevJavaDepsList()***REMOVED***
return props.getProperty("svn.dev.deps-java");
***REMOVED***
public String getSVNRDevKWDepsList()***REMOVED***
return props.getProperty("svn.dev.deps-knime-workflow");
***REMOVED***
public String getSVNRDevOctaveDepsList()***REMOVED***
return props.getProperty("svn.dev.deps-octave");
***REMOVED***
public String getSVNRDevPythonDepsList()***REMOVED***
return props.getProperty("svn.dev.deps-python");
***REMOVED***
public String getSVNRDevWCDepsList()***REMOVED***
return props.getProperty("svn.dev.deps-windows-compiled");
***REMOVED***
public String getCSVUrl() ***REMOVED***
return props.getProperty("HAPROXY_CSV");
***REMOVED*** ***REMOVED***
***REMOVED*** public String getSVNDevLinuxCompiledDepsList()***REMOVED***
***REMOVED*** return props.getProperty("svn.dev.deps-linux-compiled");
***REMOVED*** ***REMOVED***
***REMOVED***
***REMOVED*** public String getSVNDevCRANDepsList()***REMOVED***
***REMOVED*** return props.getProperty("svn.dev.deps-r");
***REMOVED*** ***REMOVED***
***REMOVED***
***REMOVED*** public String getSVNDevPreInstalledDepsList()***REMOVED***
***REMOVED*** return props.getProperty("svn.dev.deps-pre-installed");
***REMOVED*** ***REMOVED***
***REMOVED***
***REMOVED*** public String getSVNDevRBDepsList()***REMOVED***
***REMOVED*** return props.getProperty("svn.dev.deps-r-blackbox");
***REMOVED*** ***REMOVED***
***REMOVED***
***REMOVED*** public String getSVNDevJavaDepsList()***REMOVED***
***REMOVED*** return props.getProperty("svn.dev.deps-java");
***REMOVED*** ***REMOVED***
***REMOVED***
***REMOVED*** public String getSVNDevKWDepsList()***REMOVED***
***REMOVED*** return props.getProperty("svn.dev.deps-knime-workflow");
***REMOVED*** ***REMOVED***
***REMOVED***
***REMOVED*** public String getSVNDevOctaveDepsList()***REMOVED***
***REMOVED*** return props.getProperty("svn.dev.deps-octave");
***REMOVED*** ***REMOVED***
***REMOVED***
***REMOVED*** public String getSVNDevPythonDepsList()***REMOVED***
***REMOVED*** return props.getProperty("svn.dev.deps-python");
***REMOVED*** ***REMOVED***
***REMOVED***
***REMOVED*** public String getSVNDevWCDepsList()***REMOVED***
***REMOVED*** return props.getProperty("svn.dev.deps-windows-compiled");
***REMOVED*** ***REMOVED***
***REMOVED***
***REMOVED***
***REMOVED*** public String getCSVUrl() ***REMOVED***
***REMOVED*** return props.getProperty("HAPROXY_CSV");
***REMOVED******REMOVED***
public String getHost(String env)***REMOVED*** ***REMOVED*** public String getHost(String env)***REMOVED***
String a = ""; ***REMOVED*** String a = "";
***REMOVED***
if (env.equals("Dev"))***REMOVED*** ***REMOVED*** if (env.equals("Dev")||(env.equals("Preprod")))***REMOVED***
a = this.getDevStagingHost().trim(); ***REMOVED*** a = this.getDevStagingHost().trim();
***REMOVED*** ***REMOVED*** ***REMOVED***
***REMOVED***
if (env.equals("Prod")||(env.equals("Prod")))***REMOVED*** ***REMOVED*** if (env.equals("Prod")||(env.equals("Proto")))***REMOVED***
a = this.getProtoProdStagingHost().trim(); ***REMOVED*** a = this.getProtoProdStagingHost().trim();
***REMOVED*** ***REMOVED*** ***REMOVED***
return a; ***REMOVED*** return a;
***REMOVED******REMOVED***
***REMOVED*** public String getDevStagingHost() ***REMOVED***
***REMOVED*** return props.getProperty("DEV_STAGING_HOST");
***REMOVED******REMOVED***
public String getStagingHost() ***REMOVED***
return props.getProperty("STAGE_GHOST");
***REMOVED*** ***REMOVED***
***REMOVED*** public String getProtoProdStagingHost() ***REMOVED***
public String getDevStagingHost() ***REMOVED*** ***REMOVED*** return props.getProperty("PROTO_PROD_STAGING_HOST");
return props.getProperty("DEV_STAGING_HOST"); ***REMOVED******REMOVED***
***REMOVED***
***REMOVED***Staging
public String getSVNStagingAlgorithmsList()***REMOVED***
return props.getProperty("svn.stage.algorithms-list");
***REMOVED***
public String getSVNStagingLinuxCompiledDepsList()***REMOVED***
return props.getProperty("svn.stage.deps-linux-compiled");
***REMOVED***
public String getSVNStagingCRANDepsList()***REMOVED***
return props.getProperty("svn.stage.deps-r");
***REMOVED***
public String getSVNStagingPreInstalledDepsList()***REMOVED***
return props.getProperty("svn.stage.deps-pre-installed");
***REMOVED***
public String getSVNStagingRBDepsList()***REMOVED***
return props.getProperty("svn.stage.deps-r-blackbox");
***REMOVED***
public String getSVNStagingJavaDepsList()***REMOVED***
return props.getProperty("svn.stage.deps-java");
***REMOVED***
public String getSVNStagingKWDepsList()***REMOVED***
return props.getProperty("svn.stage.deps-knime-workflow");
***REMOVED***
public String getSVNStagingOctaveDepsList()***REMOVED***
return props.getProperty("svn.stage.deps-octave");
***REMOVED***
public String getSVNStagingPythonDepsList()***REMOVED***
return props.getProperty("svn.stage.deps-python");
***REMOVED***
public String getSVNStagingWCDepsList()***REMOVED***
return props.getProperty("svn.stage.deps-windows-compiled");
***REMOVED***
public String getProtoProdStagingHost() ***REMOVED***
return props.getProperty("PROTO_PROD_STAGING_HOST");
***REMOVED***
public static void main(String[] args) throws FileNotFoundException ***REMOVED*** public static void main(String[] args) throws FileNotFoundException ***REMOVED***
ServiceConfiguration a = new ServiceConfiguration(); ServiceConfiguration a = new ServiceConfiguration();
***REMOVED***System.out.println(a.getStagingHost()); ***REMOVED***System.out.println(a.getStagingHost());
System.out.println(a.getDevStagingHost()); ***REMOVED***System.out.println(a.getDevStagingHost());
System.out.println(a.getProtoProdStagingHost()); ***REMOVED***System.out.println(a.getProtoProdStagingHost());
System.out.println(a.getCSVUrl()); ***REMOVED***System.out.println(a.getCSVUrl());
System.out.println(a.getSVNMainAlgoRepo()); ***REMOVED***System.out.println(a.getSVNMainAlgoRepo());
System.out.println(a.getSVNRProtoCRANDepsList()); ***REMOVED***System.out.println(a.getSVNRProtoCRANDepsList());
System.out.println(a.getStagingHost());
***REMOVED*** ***REMOVED***

View File

@ -1,50 +1,23 @@
#YML node file #YML node file
DEV_STAGING_HOST: dataminer1-devnext.d4science.org SVN_REPO = https:***REMOVED***svn.d4science.research-infrastructures.eu/gcube/trunk/data-analysis/RConfiguration/RPackagesManagement/
PROTO_PROD_STAGING_HOST: dataminer-proto-ghost.d4science.org
SVN_REPO: https:***REMOVED***svn.d4science.research-infrastructures.eu/gcube/trunk/data-analysis/RConfiguration/RPackagesManagement/
#HAPROXY_CSV: http:***REMOVED***data.d4science.org/Yk4zSFF6V3JOSytNd3JkRDlnRFpDUUR5TnRJZEw2QjRHbWJQNStIS0N6Yz0
svn.repository = https:***REMOVED***svn.d4science.research-infrastructures.eu/gcube svn.repository = https:***REMOVED***svn.d4science.research-infrastructures.eu/gcube
svn.algo.main.repo = /trunk/data-analysis/DataMinerConfiguration/algorithms svn.algo.main.repo = /trunk/data-analysis/DataMinerConfiguration/algorithms
svn.rproto.algorithms-list = /trunk/data-analysis/DataMinerConfiguration/algorithms/proto/algorithms
svn.rproto.deps-linux-compiled = #STAGE
svn.rproto.deps-pre-installed = STAGE_GHOST = dataminer-ghost-d.dev.d4science.org
svn.rproto.deps-r-blackbox = svn.stage.algorithms-list = /trunk/data-analysis/DataMinerConfiguration/algorithms/dev/algorithms
svn.rproto.deps-r = /trunk/data-analysis/RConfiguration/RPackagesManagement/test_r_cran_pkgs.txt
svn.rproto.deps-java =
svn.rproto.deps-knime-workflow =
svn.rproto.deps-octave =
svn.rproto.deps-python =
svn.rproto.deps-windows-compiled =
svn.stage.deps-linux-compiled = /trunk/data-analysis/RConfiguration/RPackagesManagement/r_deb_pkgs.txt
svn.stage.deps-pre-installed = /trunk/data-analysis/RConfiguration/RPackagesManagement/r_deb_pkgs.txt
svn.stage.deps-r-blackbox = /trunk/data-analysis/RConfiguration/RPackagesManagement/r_cran_pkgs.txt
svn.stage.deps-r = /trunk/data-analysis/RConfiguration/RPackagesManagement/r_cran_pkgs.txt
svn.stage.deps-java =
svn.stage.deps-knime-workflow =
svn.stage.deps-octave =
svn.stage.deps-python =
svn.stage.deps-windows-compiled =
svn.prod.algorithms-list = /trunk/data-analysis/DataMinerConfiguration/algorithms/prod/algorithms #PROD
svn.prod.algorithms-list = /trunk/data-analysis/DataMinerConfiguration/algorithms/prod/algorithms
svn.prod.deps-linux-compiled =
svn.prod.deps-pre-installed =
svn.prod.deps-r-blackbox =
svn.prod.deps-r = /trunk/data-analysis/RConfiguration/RPackagesManagement/r_cran_pkgs.txt
svn.prod.deps-java =
svn.prod.deps-knime-workflow =
svn.prod.deps-octave =
svn.prod.deps-python =
svn.prod.deps-windows-compiled =
svn.dev.algorithms-list = /trunk/data-analysis/DataMinerConfiguration/algorithms/dev/algorithms
svn.dev.deps-linux-compiled =
svn.dev.deps-pre-installed =
svn.dev.deps-r-blackbox =
svn.dev.deps-r = /trunk/data-analysis/RConfiguration/RPackagesManagement/r_cran_pkgs.txt
svn.dev.deps-java =
svn.dev.deps-knime-workflow =
svn.dev.deps-octave =
svn.dev.deps-python =
svn.dev.deps-windows-compiled =

View File

@ -5,12 +5,12 @@
<web-app> <web-app>
<display-name>Archetype Created Web Application</display-name> <display-name>Archetype Created Web Application</display-name>
<context-param> <!-- <context-param>
<param-name>Environment</param-name> <param-name>Environment</param-name>
<param-value>Dev</param-value> <param-value>Dev</param-value>
<!-- Possible Values: Dev, Proto, Prod --> Possible Values: Dev, Proto, Prod, Preprod
<description>This is a context parameter example</description> <description>This is a context parameter example</description>
</context-param> </context-param> -->
<servlet> <servlet>
<servlet-name>REST-API</servlet-name> <servlet-name>REST-API</servlet-name>