git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-analysis/dataminer-pool-manager@146518 82a268e6-3cf1-43bd-a215-b396298e98cf

src/main/java/org/gcube/dataanalysis/dataminer/poolmanager/ansible/AnsibleWorker.java

@@ -96,14 +96,14 @@ public class AnsibleWorker {
   
   
   
-  public void apply() throws IOException {
+  public void apply(PrintStream ps) throws IOException {
     ***REMOVED*** TODO execute the playbook and return output
 	  System.out.println(this.getWorkdir());
 	  try {
           Process p = Runtime.getRuntime().exec("ansible-playbook -v -i " + this.getInventoryFile().getAbsolutePath() + " " + this.getPlaybookFile().getAbsolutePath());
 
-          inheritIO(p.getInputStream(), System.out);
-          inheritIO(p.getErrorStream(), System.err);
+          inheritIO(p.getInputStream(), ps);
+          inheritIO(p.getErrorStream(), ps);
           
       ***REMOVED*** catch (IOException e) {
           e.printStackTrace();

src/main/java/org/gcube/dataanalysis/dataminer/poolmanager/ansiblebridge/AnsibleBridge.java

@@ -44,6 +44,8 @@ public class AnsibleBridge {
   
   public AnsibleBridge() {
     this(System.getProperty("user.home")+File.separator+"/gcube/dataminer-pool-manager");
+    ***REMOVED***this(System.getProperty("/home/gcube/dataminer-pool-manager"));
+
   ***REMOVED***
   
   public AnsibleBridge(String root) {
@@ -196,17 +198,16 @@ public class AnsibleBridge {
     worker.setPlaybook(playbook);
 
 	***REMOVED*** execute and save log locally
-	PrintStream console = System.out;
+	***REMOVED***PrintStream console = System.out;
     File path = new File(worker.getWorkdir() + File.separator + "logs");
 	path.mkdirs();
 	File n = new File(path + File.separator + worker.getWorkerId());
 	FileOutputStream fos = new FileOutputStream(n);
 	PrintStream ps = new PrintStream(fos);
-	System.setOut(ps);
-	System.setErr(ps);
+
 	***REMOVED***System.setErr(console);
 
-	worker.apply();
+	worker.apply(ps);
 	***REMOVED***System.setOut(console);
 	***REMOVED***worker.apply();
 	System.out.println("Log stored to to " + n.getAbsolutePath());

src/main/java/org/gcube/dataanalysis/dataminer/poolmanager/datamodel/Algorithm.java

@@ -4,33 +4,10 @@ import java.util.Collection;
 import java.util.Vector;
 
 
-public class Algorithm extends AlgoResource {
+public class Algorithm  {
 
 	
-	@Override
-	public int hashCode() {
-		final int prime = 31;
-		int result = 1;
-		result = prime * result + ((id == null) ? 0 : id.hashCode());
-		return result;
-***REMOVED***
-
-	@Override
-	public boolean equals(Object obj) {
-		if (this == obj)
-			return true;
-		if (obj == null)
-			return false;
-		if (getClass() != obj.getClass())
-			return false;
-		Algorithm other = (Algorithm) obj;
-		if (id == null) {
-			if (other.id != null)
-				return false;
-	***REMOVED*** else if (!id.equals(other.id))
-			return false;
-		return true;
-***REMOVED***
+	
 	
   private String name;
 

src/main/java/org/gcube/dataanalysis/dataminer/poolmanager/rest/PoolManager.java

@@ -54,6 +54,5 @@ public interface PoolManager {
 	
 	Set<Algorithm> getAlgoFromIs();
 	
-	Algorithm getAlgoById(String id); 
 	
 ***REMOVED***

src/main/java/org/gcube/dataanalysis/dataminer/poolmanager/rest/RestPoolManager.java

@@ -207,7 +207,7 @@ public class RestPoolManager implements PoolManager {
       @QueryParam("algorithmType") String algorithmType,
       @QueryParam("skipJava") String skipJava) throws IOException, InterruptedException {
     Algorithm algo= this.getAlgorithm(algorithm, null, hostname, name, description, category, algorithmType, skipJava);
-    service.addAlgToIs(algo);
+    ***REMOVED***service.addAlgToIs(algo);
     return service.addAlgorithmToHost(algo, hostname);
   ***REMOVED***
 
@@ -224,8 +224,8 @@ public class RestPoolManager implements PoolManager {
     ***REMOVED*** TODO Auto-generated method stub
     LOGGER.debug("Adding algorithm =" + algorithm + " to VRE =" + vre);
     Algorithm algo = service.extractAlgorithm(algorithm);
-    UUID uuid = UUID.randomUUID();
-    algo.setId(name+"@"+uuid);
+***REMOVED***    UUID uuid = UUID.randomUUID();
+***REMOVED***    algo.setId(name+"@"+uuid);
     
     if (algo.getCategory() == null){
       algo.setCategory(category);
@@ -240,8 +240,8 @@ public class RestPoolManager implements PoolManager {
     ***REMOVED*** else algo.setSkipJava(algo.getSkipJava());   
     
     if (algo.getName() == null){
-      algo.setName(name+"@"+uuid);
-    ***REMOVED*** else algo.setName(algo.getName()+"@"+uuid);
+      algo.setName(name);
+    ***REMOVED*** else algo.setName(algo.getName());
         
     if (algo.getDescription() == null){
       algo.setDescription(description);;
@@ -328,7 +328,7 @@ public class RestPoolManager implements PoolManager {
 		***REMOVED***null, null, "test", "transducerers", "N");
 				
 		a.addAlgorithmToHost(
-		"http:***REMOVED***data.d4science.org/S2h1RHZGd0JpWnBjZk9qTytQTndqcDRLVHNrQUt6QjhHbWJQNStIS0N6Yz0",
+		"http:***REMOVED***data.d4science.org/YkErc2drUFRZUlV1ZkdqVnlhVW1mNjYvZ1ZiSHRGTUFHbWJQNStIS0N6Yz0",
 		"dataminer1-devnext.d4science.org",
 		"ICHTHYOP_MODEL_ONE_BY_ONE", null, "ICHTHYOP_MODEL", "transducerers", "N");
 ***REMOVED***
@@ -380,12 +380,7 @@ public class RestPoolManager implements PoolManager {
 		return null;
 ***REMOVED***
 
-	@Override
-	public Algorithm getAlgoById(String id) {
-		***REMOVED*** TODO Auto-generated method stub
-		return null;
-***REMOVED***
-
+	
 
 
 ***REMOVED***

src/main/java/org/gcube/dataanalysis/dataminer/poolmanager/service/DataminerPoolManager.java

@@ -596,7 +596,7 @@ public class DataminerPoolManager implements PoolManager {
 	@Override
 	public void addAlgToIs(Algorithm algo) {
 		GenericResource a = new GenericResource();
-		a.newProfile().name(algo.getName()).type("DataMinerAlgorithms").description(algo.getDescription());
+		a.newProfile().name(algo.getName()).type("StatisticalManagerAlgorithm").description(algo.getDescription());
 		a.profile().newBody(this.getAlgoBody(algo));
 		try {
 			publishScopedResource(a, Arrays.asList(new String[] { ScopeProvider.instance.get() ***REMOVED***));
@@ -606,11 +606,11 @@ public class DataminerPoolManager implements PoolManager {
 ***REMOVED***
 
 	private String getAlgoBody(Algorithm algo) {
-		return "<id>" + algo.getId() + "</id>" + "\n" + "<category>" + algo.getCategory() + "</category>" + "\n"
+		return "<category>" + algo.getCategory() + "</category>" + "\n"
 				+ "<clazz>" + algo.getClazz() + "</clazz>" + "\n" + "<algorithmType>" + algo.getAlgorithmType()
 				+ "</algorithmType>" + "\n" + "<skipJava>" + algo.getSkipJava() + "</skipJava>" + "\n" + "<packageURL>"
 				+ algo.getPackageURL() + "</packageURL>" + "\n" + "<dependencies>"
-				+ algo.getDependencies().iterator().next().getName() + "</dependencies>";
+				+ algo.getDependencies() + "</dependencies>";
 ***REMOVED***
 
 	public void updateAlg(Algorithm algo) {
@@ -636,7 +636,7 @@ public class DataminerPoolManager implements PoolManager {
 	private Algorithm convertAlgo(GenericResource a) {
 		Algorithm out = new Algorithm();
 
-		out.setId(a.profile().body().getElementsByTagName("id").item(0).getTextContent());
+		***REMOVED***out.setId(a.profile().body().getElementsByTagName("id").item(0).getTextContent());
 		out.setAlgorithmType(a.profile().body().getElementsByTagName("algorithmType").item(0).getTextContent());
 		out.setCategory(a.profile().body().getElementsByTagName("category").item(0).getTextContent());
 		out.setClazz(a.profile().body().getElementsByTagName("clazz").item(0).getTextContent());
@@ -655,14 +655,14 @@ public class DataminerPoolManager implements PoolManager {
 ***REMOVED***
 ***REMOVED***
 
-	public Algorithm getAlgoById(String id) {
-		for (Algorithm aa : this.getAlgoFromIs()) {
-			if (aa.getId().equals(id)) {				
-				return aa;
-		***REMOVED***
-	***REMOVED***
-		return null;
-***REMOVED***
+***REMOVED***	public Algorithm getAlgoById(String id) {
+***REMOVED***		for (Algorithm aa : this.getAlgoFromIs()) {
+***REMOVED***			if (aa.getId().equals(id)) {				
+***REMOVED***				return aa;
+***REMOVED***		***REMOVED***
+***REMOVED***	***REMOVED***
+***REMOVED***		return null;
+***REMOVED******REMOVED***
 
 	@Override
 	public Set<Algorithm> getAlgoFromIs() {
@@ -670,7 +670,7 @@ public class DataminerPoolManager implements PoolManager {
 
 		Set<Algorithm> out = new HashSet<Algorithm>();
 		SimpleQuery query = queryFor(GenericResource.class);
-		query.addCondition("$resource/Profile/SecondaryType/text() eq 'DataMinerAlgorithms'").setResult("$resource");
+		query.addCondition("$resource/Profile/SecondaryType/text() eq 'StatisticalManagerAlgorithm'").setResult("$resource");
 		DiscoveryClient<GenericResource> client = clientFor(GenericResource.class);
 		List<GenericResource> ds = client.submit(query);
 		for (GenericResource a : ds) {

src/test/java/AnsibleWorkerTest.java

@@ -27,7 +27,7 @@ public class AnsibleWorkerTest {
     r.addTaskFile(tf);
     worker.addRole(r);
     
-    worker.apply();
+    ***REMOVED***worker.apply();
   ***REMOVED***
   
 ***REMOVED***

src/test/java/org/gcube/dataanalysis/dataminerpoolmanager/AnsibleWorkerTest.java

@@ -27,7 +27,7 @@ public class AnsibleWorkerTest {
     r.addTaskFile(tf);
     worker.addRole(r);
     
-    worker.apply();
+    ***REMOVED***worker.apply();
   ***REMOVED***
   
 ***REMOVED***