git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-analysis/dataminer-pool-manager@148467 82a268e6-3cf1-43bd-a215-b396298e98cf
This commit is contained in:
Nunzio Andrea Galante
parent
9d3cf1deb6
commit
3331ec29b2
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@ -10,6 +10,7 @@ import java.io.IOException;
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import java.io.InputStream;
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import java.io.InputStreamReader;
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import java.io.PrintStream;
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import java.io.StringWriter;
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import java.net.MalformedURLException;
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import java.net.URL;
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import java.util.ArrayList;
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@ -27,15 +28,26 @@ import java.util.TreeMap;
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import java.util.TreeSet;
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import java.util.Vector;
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import org.gcube.common.authorization.library.provider.SecurityTokenProvider;
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import org.gcube.common.resources.gcore.GenericResource;
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import org.gcube.common.resources.gcore.Resources;
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import org.gcube.common.resources.gcore.ServiceEndpoint;
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import org.gcube.common.scope.api.ScopeProvider;
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import org.gcube.dataanalysis.dataminer.poolmanager.datamodel.Algorithm;
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import org.gcube.dataanalysis.dataminer.poolmanager.datamodel.Cluster;
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import org.gcube.dataanalysis.dataminer.poolmanager.datamodel.Dependency;
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import org.gcube.dataanalysis.dataminer.poolmanager.datamodel.Domain;
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import org.gcube.dataanalysis.dataminer.poolmanager.datamodel.Host;
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import org.gcube.dataanalysis.dataminer.poolmanager.datamodel.comparator.HostComparator;
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import org.gcube.dataanalysis.dataminer.poolmanager.service.DataminerPoolManager;
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import org.gcube.informationsystem.publisher.AdvancedScopedPublisher;
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import org.gcube.informationsystem.publisher.RegistryPublisherFactory;
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import org.gcube.informationsystem.publisher.ScopedPublisher;
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import org.gcube.informationsystem.publisher.exception.RegistryNotFoundException;
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import org.gcube.resources.discovery.client.api.DiscoveryClient;
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import org.gcube.resources.discovery.client.queries.api.SimpleQuery;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import org.tmatesoft.svn.core.SVNDepth;
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import org.tmatesoft.svn.core.SVNException;
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import org.tmatesoft.svn.core.SVNURL;
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@ -52,6 +64,7 @@ import org.tmatesoft.svn.core.wc.SVNWCUtil;
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import au.com.bytecode.opencsv.CSVReader;
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public class ISClient {
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private static final Logger LOGGER = LoggerFactory.getLogger(ISClient.class);
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public Host getDataminer(String hostname) {
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@ -160,6 +173,130 @@ public class ISClient {
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}
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}
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public void updateAlg(Algorithm algo) {
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ScopedPublisher scopedPublisher = RegistryPublisherFactory.scopedPublisher();
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SimpleQuery query = queryFor(GenericResource.class);
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query.addCondition("$resource/Profile/Name/text() eq '" + algo.getName() + "'").setResult("$resource");
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DiscoveryClient<GenericResource> client = clientFor(GenericResource.class);
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List<GenericResource> ds = client.submit(query);
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if (ds.isEmpty()) {
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return;
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}
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GenericResource a = ds.get(0);
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a.profile().newBody(this.getAlgoBody(algo));
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try {
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scopedPublisher.update(a);
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} catch (RegistryNotFoundException e) {
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e.printStackTrace();
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}
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}
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private String getAlgoBody(Algorithm algo) {
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return "<category>" + algo.getCategory() + "</category>" + "\n" + "<clazz>" + algo.getClazz() + "</clazz>"
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+ "\n" + "<algorithmType>" + algo.getAlgorithmType() + "</algorithmType>" + "\n" + "<skipJava>"
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+ algo.getSkipJava() + "</skipJava>" + "\n" + "<packageURL>" + algo.getPackageURL() + "</packageURL>"
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+ "\n" + "<dependencies>" + algo.getDependencies() + "</dependencies>";
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}
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// public void addAlgToIs(Algorithm algo) {
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// GenericResource a = new GenericResource();
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// a.newProfile().name(algo.getName()).type("StatisticalManagerAlgorithm").description(algo.getDescription());
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// a.profile().newBody(this.getAlgoBody(algo));
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// try {
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// publishScopedResource(a, Arrays.asList(new String[] { ScopeProvider.instance.get() }));
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// } catch (Exception e) {
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// e.printStackTrace();
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// }
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// }
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public void addAlgToIs(Algorithm algo, String token) {
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GenericResource a = new GenericResource();
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a.newProfile().name(algo.getName()).type("StatisticalManagerAlgorithm").description(algo.getDescription());
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a.profile().newBody(this.getAlgoBody(algo));
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try {
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SecurityTokenProvider.instance.set(token);
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publishScopedResource(a, Arrays.asList(new String[] { ScopeProvider.instance.get() }));
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} catch (Exception e) {
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e.printStackTrace();
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}
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}
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public void unPublishScopedResource(GenericResource resource) throws RegistryNotFoundException, Exception {
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ScopedPublisher scopedPublisher = RegistryPublisherFactory.scopedPublisher();
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AdvancedScopedPublisher advancedScopedPublisher = new AdvancedScopedPublisher(scopedPublisher);
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String id = resource.id();
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LOGGER.debug("Trying to remove {} with ID {} from {}", resource.getClass().getSimpleName(), id,
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ScopeProvider.instance.get());
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// scopedPublisher.remove(resource, scopes);
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advancedScopedPublisher.forceRemove(resource);
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LOGGER.debug("{} with ID {} removed successfully", resource.getClass().getSimpleName(), id);
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}
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public void publishScopedResource(GenericResource a, List<String> scopes)
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throws RegistryNotFoundException, Exception {
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StringWriter stringWriter = new StringWriter();
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Resources.marshal(a, stringWriter);
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ScopedPublisher scopedPublisher = RegistryPublisherFactory.scopedPublisher();
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try {
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System.out.println(scopes);
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System.out.println(stringWriter);
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scopedPublisher.create(a, scopes);
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} catch (RegistryNotFoundException e) {
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System.out.println(e);
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throw e;
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}
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}
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public Set<Algorithm> getAlgoFromIs() {
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// TODO Auto-generated method stub
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Set<Algorithm> out = new HashSet<Algorithm>();
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SimpleQuery query = queryFor(GenericResource.class);
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query.addCondition("$resource/Profile/SecondaryType/text() eq 'StatisticalManagerAlgorithm'")
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.setResult("$resource");
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DiscoveryClient<GenericResource> client = clientFor(GenericResource.class);
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List<GenericResource> ds = client.submit(query);
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for (GenericResource a : ds) {
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out.add(this.convertAlgo(a));
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}
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return out;
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}
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private Algorithm convertAlgo(GenericResource a) {
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Algorithm out = new Algorithm();
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// out.setId(a.profile().body().getElementsByTagName("id").item(0).getTextContent());
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out.setAlgorithmType(a.profile().body().getElementsByTagName("algorithmType").item(0).getTextContent());
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out.setCategory(a.profile().body().getElementsByTagName("category").item(0).getTextContent());
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out.setClazz(a.profile().body().getElementsByTagName("clazz").item(0).getTextContent());
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out.setName(a.profile().name());
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out.setPackageURL(a.profile().body().getElementsByTagName("packageURL").item(0).getTextContent());
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out.setSkipJava(a.profile().body().getElementsByTagName("skipJava").item(0).getTextContent());
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out.setDescription(a.profile().description());
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Set<org.gcube.dataanalysis.dataminer.poolmanager.datamodel.Dependency> deps = new HashSet<org.gcube.dataanalysis.dataminer.poolmanager.datamodel.Dependency>();
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for (int i = 0; i < a.profile().body().getElementsByTagName("dependencies").getLength(); i++) {
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org.gcube.dataanalysis.dataminer.poolmanager.datamodel.Dependency d1 = new org.gcube.dataanalysis.dataminer.poolmanager.datamodel.Dependency();
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d1.setName(a.profile().body().getElementsByTagName("dependencies").item(i).getTextContent());
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deps.add(d1);
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}
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out.setDependencies(deps);
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return out;
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}
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public static void main(String[] args) throws IOException, SVNException {
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ISClient a = new ISClient();
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ScopeProvider.instance.set("/gcube/devNext/NextNext");
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@ -7,6 +7,7 @@ import org.gcube.common.scope.api.ScopeProvider;
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import org.gcube.dataanalysis.dataminer.poolmanager.ansible.AnsibleWorker;
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import org.gcube.dataanalysis.dataminer.poolmanager.ansiblebridge.AnsibleBridge;
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import org.gcube.dataanalysis.dataminer.poolmanager.clients.HAProxy;
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import org.gcube.dataanalysis.dataminer.poolmanager.clients.ISClient;
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import org.gcube.dataanalysis.dataminer.poolmanager.datamodel.*;
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import org.gcube.dataanalysis.dataminer.poolmanager.util.SVNUpdater;
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import org.gcube.informationsystem.publisher.AdvancedScopedPublisher;
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@ -31,7 +32,6 @@ import static org.gcube.resources.discovery.icclient.ICFactory.queryFor;
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public class DataminerPoolManager {
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private static final Logger LOGGER = LoggerFactory.getLogger(DataminerPoolManager.class);
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private SVNUpdater svnUpdater;
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@ -68,15 +68,30 @@ public class DataminerPoolManager {
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}
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//1. to complete
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private Cluster getStagingDataminerCluster(){
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Cluster cluster = new Cluster();
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Host h = new Host();
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//TODO: read this from configuration
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h.setName("test");
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//TODO: read this from configuration or IS?
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h.setName("dataminer1-devnext.d4science.org");
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cluster.addHost(h);
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return cluster;
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}
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private void createISResource(Algorithm algo, String vreToken) {
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ISClient client = new ISClient();
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for (Algorithm a : client.getAlgoFromIs()) {
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if (a.getName().equals(algo.getName())) {
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continue;
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}
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if (!a.getName().equals(algo.getName())){
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new ISClient().addAlgToIs(algo, vreToken);
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}
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}
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// TODO: create the resource only if not already present
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}
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private void updateSVNDependencies(Algorithm algo, boolean stagingVRE) throws IOException, SVNException {
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for (Dependency d : algo.getDependencies()) {
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@ -100,14 +115,6 @@ public class DataminerPoolManager {
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}
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private void createISResource(Algorithm algo, String vreToken){
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//TODO: implement method
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//TODO: create the resource only if not already present
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}
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/**
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*
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* @param algo
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@ -297,109 +304,4 @@ public class DataminerPoolManager {
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// }
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// 2017 March 29
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public void unPublishScopedResource(GenericResource resource) throws RegistryNotFoundException, Exception {
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ScopedPublisher scopedPublisher = RegistryPublisherFactory.scopedPublisher();
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AdvancedScopedPublisher advancedScopedPublisher = new AdvancedScopedPublisher(scopedPublisher);
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String id = resource.id();
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LOGGER.debug("Trying to remove {} with ID {} from {}", resource.getClass().getSimpleName(), id,
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ScopeProvider.instance.get());
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// scopedPublisher.remove(resource, scopes);
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advancedScopedPublisher.forceRemove(resource);
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LOGGER.debug("{} with ID {} removed successfully", resource.getClass().getSimpleName(), id);
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}
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public void publishScopedResource(GenericResource a, List<String> scopes)
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throws RegistryNotFoundException, Exception {
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StringWriter stringWriter = new StringWriter();
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Resources.marshal(a, stringWriter);
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ScopedPublisher scopedPublisher = RegistryPublisherFactory.scopedPublisher();
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try {
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System.out.println(scopes);
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System.out.println(stringWriter);
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scopedPublisher.create(a, scopes);
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} catch (RegistryNotFoundException e) {
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System.out.println(e);
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throw e;
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}
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}
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public void addAlgToIs(Algorithm algo) {
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GenericResource a = new GenericResource();
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a.newProfile().name(algo.getName()).type("StatisticalManagerAlgorithm").description(algo.getDescription());
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a.profile().newBody(this.getAlgoBody(algo));
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try {
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publishScopedResource(a, Arrays.asList(new String[] { ScopeProvider.instance.get() }));
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} catch (Exception e) {
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e.printStackTrace();
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}
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}
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private String getAlgoBody(Algorithm algo) {
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return "<category>" + algo.getCategory() + "</category>" + "\n" + "<clazz>" + algo.getClazz() + "</clazz>"
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+ "\n" + "<algorithmType>" + algo.getAlgorithmType() + "</algorithmType>" + "\n" + "<skipJava>"
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+ algo.getSkipJava() + "</skipJava>" + "\n" + "<packageURL>" + algo.getPackageURL() + "</packageURL>"
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+ "\n" + "<dependencies>" + algo.getDependencies() + "</dependencies>";
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}
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public void updateAlg(Algorithm algo) {
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ScopedPublisher scopedPublisher = RegistryPublisherFactory.scopedPublisher();
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SimpleQuery query = queryFor(GenericResource.class);
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query.addCondition("$resource/Profile/Name/text() eq '" + algo.getName() + "'").setResult("$resource");
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DiscoveryClient<GenericResource> client = clientFor(GenericResource.class);
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List<GenericResource> ds = client.submit(query);
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if (ds.isEmpty()) {
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return;
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}
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GenericResource a = ds.get(0);
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a.profile().newBody(this.getAlgoBody(algo));
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try {
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scopedPublisher.update(a);
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} catch (RegistryNotFoundException e) {
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e.printStackTrace();
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}
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}
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private Algorithm convertAlgo(GenericResource a) {
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Algorithm out = new Algorithm();
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// out.setId(a.profile().body().getElementsByTagName("id").item(0).getTextContent());
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out.setAlgorithmType(a.profile().body().getElementsByTagName("algorithmType").item(0).getTextContent());
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out.setCategory(a.profile().body().getElementsByTagName("category").item(0).getTextContent());
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out.setClazz(a.profile().body().getElementsByTagName("clazz").item(0).getTextContent());
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out.setName(a.profile().name());
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out.setPackageURL(a.profile().body().getElementsByTagName("packageURL").item(0).getTextContent());
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out.setSkipJava(a.profile().body().getElementsByTagName("skipJava").item(0).getTextContent());
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out.setDescription(a.profile().description());
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Set<org.gcube.dataanalysis.dataminer.poolmanager.datamodel.Dependency> deps = new HashSet<org.gcube.dataanalysis.dataminer.poolmanager.datamodel.Dependency>();
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for (int i = 0; i < a.profile().body().getElementsByTagName("dependencies").getLength(); i++) {
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org.gcube.dataanalysis.dataminer.poolmanager.datamodel.Dependency d1 = new org.gcube.dataanalysis.dataminer.poolmanager.datamodel.Dependency();
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d1.setName(a.profile().body().getElementsByTagName("dependencies").item(i).getTextContent());
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deps.add(d1);
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}
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out.setDependencies(deps);
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return out;
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}
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public Set<Algorithm> getAlgoFromIs() {
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// TODO Auto-generated method stub
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Set<Algorithm> out = new HashSet<Algorithm>();
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SimpleQuery query = queryFor(GenericResource.class);
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query.addCondition("$resource/Profile/SecondaryType/text() eq 'StatisticalManagerAlgorithm'")
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.setResult("$resource");
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DiscoveryClient<GenericResource> client = clientFor(GenericResource.class);
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List<GenericResource> ds = client.submit(query);
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for (GenericResource a : ds) {
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out.add(this.convertAlgo(a));
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}
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return out;
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}
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}
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