git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-analysis/dataminer-pool-manager@151456 82a268e6-3cf1-43bd-a215-b396298e98cf

src/main/java/org/gcube/dataanalysis/dataminer/poolmanager/rest/RestPoolManager.java

@@ -50,11 +50,12 @@ public class RestPoolManager implements PoolManager {
 	@Path("/algorithm/stage")
 	@Produces("text/plain")
 	public String stageAlgorithm(
-			@QueryParam("algorithmPackageURL") String algorithmPackageURL
+			@QueryParam("algorithmPackageURL") String algorithmPackageURL,
+			@QueryParam("targetVRE") String targetVRE
 			/*@QueryParam("category") String category*/) throws IOException, InterruptedException {
 		Algorithm algo = AlgorithmBuilder.create(algorithmPackageURL);	
 		String env = context.application().getInitParameter("Environment");
-		return this.service.stageAlgorithm(algo,env);
+		return this.service.stageAlgorithm(algo,env,targetVRE);
 ***REMOVED***
 
 
@@ -217,6 +218,13 @@ public class RestPoolManager implements PoolManager {
 ***REMOVED***
 
 
+	@Override
+	public String stageAlgorithm(String algorithmPackageURL) throws IOException, InterruptedException {
+		***REMOVED*** TODO Auto-generated method stub
+		return null;
+***REMOVED***
+
+
 	
 
 

src/main/java/org/gcube/dataanalysis/dataminer/poolmanager/service/DataminerPoolManager.java

@@ -28,14 +28,14 @@ public class DataminerPoolManager {
 ***REMOVED***
 
 
-	public String stageAlgorithm(Algorithm algo, String env) throws IOException, InterruptedException {
+	public String stageAlgorithm(Algorithm algo, String env, String targetVRE) throws IOException, InterruptedException {
 		
 			Cluster stagingCluster = ClusterBuilder.getStagingDataminerCluster(env);
 
 		
 		***REMOVED***Cluster rProtoCluster = ClusterBuilder.getRProtoCluster();
 		
-		DMPMJob job = new StagingJob(this.svnUpdater, algo, stagingCluster, /*rProtoCluster,*/ ScopeProvider.instance.get(), env);
+		DMPMJob job = new StagingJob(this.svnUpdater, algo, stagingCluster, /*rProtoCluster,*/ targetVRE, env);
 		String id = job.start();
 		return id;
 ***REMOVED***

src/main/java/org/gcube/dataanalysis/dataminer/poolmanager/service/StagingJob.java

@@ -77,6 +77,9 @@ public class StagingJob extends DMPMJob {
 				return;
 		***REMOVED***
 
+			***REMOVED***before the installation to check if the files exist
+			b.deleteFiles(this.algorithm, env);;
+			
 			int ret = this.executeAnsibleWorker(createWorker(this.algorithm, this.stagingCluster, false, "root"));
 
 

src/main/java/org/gcube/dataanalysis/dataminer/poolmanager/util/CheckMethod.java

@@ -11,6 +11,7 @@ import java.util.Vector;
 
 import javax.jms.ServerSession;
 
+import org.apache.activemq.transport.tcp.ExceededMaximumConnectionsException;
 import org.gcube.dataanalysis.dataminer.poolmanager.datamodel.Algorithm;
 
 import com.jcraft.jsch.Channel;
@@ -109,6 +110,61 @@ public class CheckMethod {
 ***REMOVED***
 	
 	
+	public void deleteFiles(Algorithm a,String env) throws Exception{
+		JSch jsch = new JSch();
+		Session session = null;
+		Channel channel = null;
+		ChannelSftp c = null;
+		ServiceConfiguration p = new ServiceConfiguration();
+		System.out.println("checking existing in env: "+ env + " " + p.getHost(env));
+		
+		File file = new File("/home/gcube/wps_algorithms/algorithms/"+a.getName()+".jar");
+		File file2 = new File("/home/gcube/wps_algorithms/algorithms/"+a.getName()+"_interface.jar");
+		
+		
+		System.out.println("First file is located to: "+file.getPath());
+		System.out.println("Second file is located to: "+file2.getPath());
+		
+		
+		jsch.setKnownHosts("~/.ssh/known_hosts");
+		String privateKey = "~/.ssh/id_rsa";
+
+		jsch.addIdentity(privateKey);
+		System.out.println("Private Key Added.");
+
+		session = jsch.getSession("root", p.getHost(env));
+		System.out.println("session created.");
+
+		java.util.Properties config = new java.util.Properties();
+		config.put("StrictHostKeyChecking", "no");
+
+		session.setConfig(config);
+		session.connect();
+
+		channel = session.openChannel("sftp");
+		channel.connect();
+		System.out.println("shell channel connected....");
+
+		c = (ChannelSftp) channel;
+
+		if(doesExist(file.getPath(),env)&&(doesExist(file2.getPath(),env))){
+			
+			c.rm(file.getPath());
+			c.rm(file2.getPath());
+	    	System.out.println("Both the files have been deleted");
+	***REMOVED***
+		else System.out.println("Files not found");
+	 	channel.disconnect();
+		c.disconnect();
+		session.disconnect();
+
+***REMOVED***
+	
+	
+	
+	
+	
+	
 	public boolean doesExist(String path, String env) throws Exception {
 		JSch jsch = new JSch();
 		Session session = null;
@@ -233,18 +289,28 @@ public class CheckMethod {
 	
 	
 	***REMOVED***a.copyFromDmToSVN(aa);
-	if (a.checkMethod("dataminer1-devnext.d4science.org", "708e7eb8-11a7-4e9a-816b-c9ed7e7e99fe-98187548")){
+***REMOVED***	if (a.checkMethod("dataminer1-devnext.d4science.org", "708e7eb8-11a7-4e9a-816b-c9ed7e7e99fe-98187548")){
-		System.out.println("AAA");***REMOVED***
+***REMOVED***		System.out.println("AAA");***REMOVED***
-		
-	if (a.doesExist("/home/gcube/wps_algorithms/algorithms/RBLACKBOX.jar","Dev")){
-		System.out.println("BBBB");
-	
 ***REMOVED***		
-	if (a.doesExist("/home/gcube/wps_algorithms/algorithms/RBLACKBOX_interface.jar","Dev")){
+***REMOVED***	if (a.doesExist("/home/gcube/wps_algorithms/algorithms/RBLACKBOX.jar","Dev")){
-		System.out.println("CCCC");***REMOVED***
+***REMOVED***		System.out.println("BBBB");
+***REMOVED***	
+***REMOVED******REMOVED***
+***REMOVED***	if (a.doesExist("/home/gcube/wps_algorithms/algorithms/RBLACKBOX_interface.jar","Dev")){
+***REMOVED***		System.out.println("CCCC");***REMOVED***
+***REMOVED***	
+***REMOVED***	File aa = new File("/home/gcube/wps_algorithms/algorithms/RBLACKBOX_interface.jar");
+***REMOVED***	a.copyFromDmToSVN(aa, "Dev");
+	
+	
+	
+	Algorithm al = new Algorithm();
+	al.setName("RBLACKBOX");
+	a.deleteFiles(al, "Dev");
+	
+	
+	
 	
-	File aa = new File("/home/gcube/wps_algorithms/algorithms/RBLACKBOX_interface.jar");
-	a.copyFromDmToSVN(aa, "Dev");
 	
 	
 ***REMOVED***