ref 18190: Configure SAI and DM to support KNIME 4.1

https://support.d4science.org/issues/18190

Updated to support Knime-Workflow 4.1

.gitignore

@@ -0,0 +1 @@
+/target/

.settings/org.eclipse.wst.common.component

@@ -1,5 +1,5 @@
 <?xml version="1.0" encoding="UTF-8"?><project-modules id="moduleCoreId" project-version="1.5.0">
-    <wb-module deploy-name="dataminer-pool-manager-2.5.0-SNAPSHOT">
+    <wb-module deploy-name="dataminer-pool-manager-2.6.0-SNAPSHOT">
         <wb-resource deploy-path="/" source-path="/target/m2e-wtp/web-resources"/>
         <wb-resource deploy-path="/" source-path="/src/main/webapp" tag="defaultRootSource"/>
         <wb-resource deploy-path="/WEB-INF/classes" source-path="/src/main/java"/>

LICENSE.md

@@ -0,0 +1,311 @@
+#European Union Public Licence V.1.1
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README.md

@@ -0,0 +1,48 @@
+# DataMiner Pool Manager
+
+DataMiner Pool Manager is a service to support the integration of algorithms in D4Science Infrastructure.
+
+## Structure of the project
+
+* The source code is present in the src folder. 
+
+## Built With
+
+* [OpenJDK](https:***REMOVED***openjdk.java.net/) - The JDK used
+* [Maven](https:***REMOVED***maven.apache.org/) - Dependency Management
+
+## Documentation
+
+* Use of this widget is is described on [Wiki](https:***REMOVED***wiki.gcube-system.org/gcube/How_to_use_the_DataMiner_Pool_Manager).
+
+## Change log
+
+See [Releases](https:***REMOVED***code-repo.d4science.org/gCubeSystem/dataminer-pool-manager/releases).
+
+## Authors
+
+* **Paolo Fabriani** - [Engineering Ingegneria Informatica S.p.A., Italy](https:***REMOVED***www.eng.it/)
+* **Nunzio Andrea Galante** - [Engineering Ingegneria Informatica S.p.A., Italy](https:***REMOVED***www.eng.it/)
+* **Ciro Formisano** - [Engineering Ingegneria Informatica S.p.A., Italy](https:***REMOVED***www.eng.it/)
+
+
+## License
+
+This project is licensed under the EUPL V.1.1 License - see the [LICENSE.md](LICENSE.md) file for details.
+
+
+## About the gCube Framework
+This software is part of the [gCubeFramework](https:***REMOVED***www.gcube-system.org/ "gCubeFramework"): an
+open-source software toolkit used for building and operating Hybrid Data
+Infrastructures enabling the dynamic deployment of Virtual Research Environments
+by favouring the realisation of reuse oriented policies.
+ 
+The projects leading to this software have received funding from a series of European Union programmes including:
+
+- the Sixth Framework Programme for Research and Technological Development
+    - DILIGENT (grant no. 004260);
+- the Seventh Framework Programme for research, technological development and demonstration 
+    - D4Science (grant no. 212488), D4Science-II (grant no.239019), ENVRI (grant no. 283465), EUBrazilOpenBio (grant no. 288754), iMarine(grant no. 283644);
+- the H2020 research and innovation programme 
+    - BlueBRIDGE (grant no. 675680), EGIEngage (grant no. 654142), ENVRIplus (grant no. 654182), Parthenos (grant no. 654119), SoBigData (grant no. 654024),DESIRA (grant no. 818194), ARIADNEplus (grant no. 823914), RISIS2 (grant no. 824091), PerformFish (grant no. 727610), AGINFRAplus (grant no. 731001);
+    

changelog.xml

@@ -0,0 +1,30 @@
+<ReleaseNotes>
+<Changeset component="org.gcube.dataanalysis.dataminer-pool-manager.2-6-0" date="2019-12-11">
+  <Change>Updated to Git and Jenkins</Change>
+  <Change>Knime 4.1 added [ticket #18190]</Change>
+</Changeset>
+<Changeset component="org.gcube.dataanalysis.dataminer-pool-manager.2-5-0" date="2019-01-11">
+  <Change>SVN parameters get from IS</Change>
+  <Change>Python3.6 added [ticket #12742]</Change>
+</Changeset>
+<Changeset component="org.gcube.dataanalysis.dataminer-pool-manager.2-4-0" date="2018-11-01">
+  <Change>Notifies the 'conflicts' on SVN</Change>
+</Changeset>
+<Changeset component="org.gcube.dataanalysis.dataminer-pool-manager.2-3-0" date="2018-08-01">
+  <Change>Log information also if the verification of SVN dependencies fails</Change>
+</Changeset>
+<Changeset component="org.gcube.dataanalysis.dataminer-pool-manager.2-2-0" date="2018-06-01">
+  <Change>Improvements and bugs fixed/SVN-UTF8 compliant/Installation in Production ghost added</Change>
+  <Change>Dynamic per-VRE configuration throght the information system</Change>
+</Changeset>
+<Changeset component="org.gcube.dataanalysis.dataminer-pool-manager.2-1-0" date="2018-05-01">
+  <Change>New configuration file added</Change>
+</Changeset>
+<Changeset component="org.gcube.dataanalysis.dataminer-pool-manager.2-0-0" date="2018-01-01">
+  <Change>Second Release</Change>
+</Changeset>
+<Changeset component="org.gcube.dataanalysis.dataminer-pool-manager.1-0-0" date="2017-11-01">
+  <Change>First Release</Change>
+</Changeset>
+</ReleaseNotes>
+

descriptor.xml

@@ -9,13 +9,13 @@
 	<baseDirectory>/</baseDirectory>
 	<fileSets>
 		<fileSet>
-			<directory>${distroDirectory***REMOVED***</directory>
 			<outputDirectory>/</outputDirectory>
 			<useDefaultExcludes>true</useDefaultExcludes>
 			<includes>
-				<include>README</include>
+				<include>README.md</include>
-				<include>LICENSE</include>
+				<include>LICENSE.md</include>
 				<include>changelog.xml</include>
+				<include>profile.xml</include>
 			</includes>
 			<fileMode>755</fileMode>
 			<filtered>true</filtered>
@@ -23,7 +23,7 @@
 	</fileSets>
 	<files>
 		<file>
-			<source>target/${build.finalName***REMOVED***.war</source>
+			<source>target/${build.finalName***REMOVED***.${project.packaging***REMOVED***</source>
 			<outputDirectory>/${artifactId***REMOVED***</outputDirectory>
 		</file>
 	</files>

distro/LICENSE

@@ -1 +0,0 @@
-${gcube.license***REMOVED***

distro/README

@@ -1,68 +0,0 @@
-The gCube System - ${name***REMOVED***
---------------------------------------------------
-
-${description***REMOVED***
- 
-${gcube.description***REMOVED***
- 
-${gcube.funding***REMOVED***
- 
- 
-Version
---------------------------------------------------
-${version***REMOVED*** (${buildDate***REMOVED***)
- 
-Please see the file named "changelog.xml" in this directory for the release notes.
- 
- 
-Authors
---------------------------------------------------
-* Paolo Fabriani (paolo.fabriani-AT-eng.it)
-  Engineering Ingegneria Informatica S.p.A., Italy 
-* Nunzio Andrea Galante (nunzioandrea.galante-AT-eng.it)
-  Engineering Ingegneria Informatica S.p.A., Italy 
-* Ciro Formisano (ciro.formisano-AT-eng.it)
-Engineering Ingegneria Informatica S.p.A., Italy 
-  
-
- 
-Maintainers
--------------------------------------------------- 
-* Paolo Fabriani (paolo.fabriani-AT-eng.it)
-  Engineering Ingegneria Informatica S.p.A., Italy 
-* Nunzio Andrea Galante (nunzioandrea.galante-AT-eng.it)
-  Engineering Ingegneria Informatica S.p.A., Italy 
-* Ciro Formisano (ciro.formisano-AT-eng.it)
-Engineering Ingegneria Informatica S.p.A., Italy 
- 
-Download information
--------------------------------------------------- 
-Source code is available from SVN: 
-    ${scm.url***REMOVED***
- 
-Binaries can be downloaded from the gCube website: 
-   ${gcube.website***REMOVED***
- 
- 
-Installation
---------------------------------------------------
-Installation documentation is available on-line in the gCube Wiki:
-    ${gcube.wikiRoot***REMOVED***/[admin guide page name here]  
- 
- 
-Documentation 
---------------------------------------------------
-Documentation is available on-line in the gCube Wiki:
-    ${gcube.wikiRoot***REMOVED***[user guide page name here]
-    ${gcube.wikiRoot***REMOVED***[developer guide page name here] 
- 
-
-Support 
---------------------------------------------------
-Bugs and support requests can be reported in the gCube issue tracking tool:
-    ${gcube.issueTracking***REMOVED***
- 
- 
-Licensing
---------------------------------------------------
-This software is licensed under the terms you may find in the file named "LICENSE" in this directory.

distro/changelog.xml

@@ -1,26 +0,0 @@
-<ReleaseNotes>
-<Changeset component="dataminer-pool-manager.2-5-0" date="${buildDate***REMOVED***">
-  <Change>SVN parameters get from IS</Change>
-  <Change>Python3.6 added [ticket #12742]</Change>
-</Changeset>
-<Changeset component="dataminer-pool-manager.2-4-0" date="${buildDate***REMOVED***">
-  <Change>Notifies the 'conflicts' on SVN</Change>
-</Changeset>
-<Changeset component="dataminer-pool-manager.2-3-0" date="${buildDate***REMOVED***">
-  <Change>Log information also if the verification of SVN dependencies fails</Change>
-</Changeset>
-<Changeset component="dataminer-pool-manager.2-2-0" date="${buildDate***REMOVED***">
-  <Change>Improvements and bugs fixed/SVN-UTF8 compliant/Installation in Production ghost added</Change>
-  <Change>Dynamic per-VRE configuration throght the information system</Change>
-</Changeset>
-<Changeset component="dataminer-pool-manager.2-1-0" date="${buildDate***REMOVED***">
-  <Change>New configuration file added</Change>
-</Changeset>
-<Changeset component="dataminer-pool-manager.2-0-0" date="${buildDate***REMOVED***">
-  <Change>Second Release</Change>
-</Changeset>
-<Changeset component="dataminer-pool-manager.1-0-0" date="${buildDate***REMOVED***">
-  <Change>First Release</Change>
-</Changeset>
-</ReleaseNotes>
-

pom.xml

@@ -5,7 +5,7 @@
 	<parent>
 		<artifactId>maven-parent</artifactId>
 		<groupId>org.gcube.tools</groupId>
-		<version>1.0.0</version>
+		<version>1.1.0</version>
 		<relativePath />
 	</parent>
 
@@ -15,8 +15,14 @@
 	<version>2.6.0-SNAPSHOT</version>
 
 	<name>dataminer-pool-manager</name>
-	<description>
+	<description>DataMiner Pool Manager is a service to support the integration of algorithms in D4Science Infrastructure</description>
-    </description>
+
+	<scm>
+		<connection>scm:git:https:***REMOVED***code-repo.d4science.org/gCubeSystem/${project.artifactId***REMOVED***.git</connection>
+		<developerConnection>scm:git:https:***REMOVED***code-repo.d4science.org/gCubeSystem/${project.artifactId***REMOVED***.git</developerConnection>
+		<url>https:***REMOVED***code-repo.d4science.org/gCubeSystem/${project.artifactId***REMOVED***</url>
+	</scm>
+
 
 	<properties>
 		<distroDirectory>distro</distroDirectory>
@@ -38,7 +44,6 @@
 		<dependency>
 			<groupId>org.gcube.core</groupId>
 			<artifactId>common-smartgears-app</artifactId>
-			<version>[1.0.0-SNAPSHOT,2.0.2)</version>
 		</dependency>
 
 		<dependency>
@@ -65,13 +70,7 @@
 			<artifactId>stringtemplate</artifactId>
 			<version>[4.0.0, 4.1.0)</version>
 		</dependency>
-		<!-- <dependency>
+		
-			<groupId>org.gcube.dataanalysis</groupId>
-			<artifactId>ecological-engine-smart-executor</artifactId>
-			<version>[1.4.0-SNAPSHOT, 1.6.0-SNAPSHOT]</version>
-		</dependency> -->
-
-
 		<dependency>
 			<groupId>javax.servlet</groupId>
 			<artifactId>servlet-api</artifactId>
@@ -79,9 +78,6 @@
 			<scope>provided</scope>
 		</dependency>
 
-
-
-
 		<dependency>
 			<groupId>org.json</groupId>
 			<artifactId>json</artifactId>
@@ -98,6 +94,7 @@
 			<artifactId>commons-configuration</artifactId>
 			<version>1.10</version>
 		</dependency>
+
 		<!-- https:***REMOVED***mvnrepository.com/artifact/com.jcraft/jsch -->
 		<dependency>
 			<groupId>com.jcraft</groupId>
@@ -106,9 +103,6 @@
 		</dependency>
 
 
-
-
-
 		<dependency>
 			<groupId>net.sf.opencsv</groupId>
 			<artifactId>opencsv</artifactId>
@@ -123,28 +117,18 @@
 		<dependency>
 			<groupId>org.glassfish.jersey.media</groupId>
 			<artifactId>jersey-media-json-jackson</artifactId>
-			<version>${version.jersey***REMOVED***</version>
 		</dependency>
 
 		<dependency>
 			<groupId>org.glassfish.jersey.core</groupId>
 			<artifactId>jersey-client</artifactId>
-			<version>${version.jersey***REMOVED***</version>
 		</dependency>
 
 		<dependency>
 			<groupId>org.glassfish.jersey.containers</groupId>
 			<artifactId>jersey-container-servlet</artifactId>
-			<version>${version.jersey***REMOVED***</version>
 		</dependency>
 
-		<!-- <dependency> <groupId>io.swagger</groupId> <artifactId>swagger-jersey2-jaxrs</artifactId> 
-			<version>${version.swagger***REMOVED***</version> </dependency> <dependency> <groupId>com.fasterxml.jackson.core</groupId> 
-			<artifactId>jackson-databind</artifactId> <version>2.6.0</version> <scope>provided</scope> 
-			</dependency> <dependency> <groupId>com.fasterxml.jackson.core</groupId> 
-			<artifactId>jackson-core</artifactId> <version>2.6.0</version> <scope>provided</scope> 
-			</dependency> <dependency> <groupId>io.swagger</groupId> <artifactId>swagger-annotations</artifactId> 
-			<version>${version.swagger***REMOVED***</version> </dependency> -->
 		<dependency>
 			<groupId>org.slf4j</groupId>
 			<artifactId>slf4j-api</artifactId>
@@ -158,8 +142,8 @@
 		<dependencies>
 			<dependency>
 				<groupId>org.gcube.distribution</groupId>
-				<artifactId>maven-smartgears-bom</artifactId>
+				<artifactId>gcube-smartgears-bom</artifactId>
-				<version>LATEST</version>
+				<version>1.1.0</version>
 				<type>pom</type>
 				<scope>import</scope>
 			</dependency>
@@ -174,7 +158,7 @@
 				<artifactId>maven-assembly-plugin</artifactId>
 				<configuration>
 					<descriptors>
-						<descriptor>${distroDirectory***REMOVED***/descriptor.xml</descriptor>
+						<descriptor>descriptor.xml</descriptor>
 					</descriptors>
 				</configuration>
 				<executions>

profile.xml

@@ -1,7 +1,7 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <Resource xmlns:xsi="http:***REMOVED***www.w3.org/2001/XMLSchema-instance">
 	<ID />
-	<Type>Library</Type>
+	<Type>Service</Type>
 	<Profile>
 		<Description>${description***REMOVED***</Description>
 		<Class>DataminerPoolManager</Class>