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dataminer-pool-manager
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Updated to gcube-smartgears-bom.2.5.0

This commit is contained in:
Giancarlo Panichi 2023-11-09 19:11:00 +01:00
parent 1d630bc331 4a5eb67f73
commit 033ce0b37b
6 changed files with 77 additions and 94 deletions
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4
CHANGELOG.md
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@ -1,9 +1,9 @@
# Changelog # Changelog
## [v2.8.0-SNAPSHOT] - 2022-11-02 ## [v2.8.0-SNAPSHOT]
- Updated to gcube-smartgears-bom.2.2.0-SNAPSHOT [#24026] - Updated to gcube-smartgears-bom.2.5.0
## [v2.7.1] - 2022-04-06 ## [v2.7.1] - 2022-04-06

6
changelog.xml
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@ -1,9 +1,9 @@
<ReleaseNotes> <ReleaseNotes>
<Changeset component="org.gcube.dataanalysis.dataminer-pool-manager.2-8-0" date="2022-04-06"> <Changeset component="org.gcube.dataanalysis.dataminer-pool-manager.2-8-0" date="2023-11-09">
<Change>Updated to gcube-smartgears-bom.2.2.0-SNAPSHOT [#24026]</Change> <Change>Updated to gcube-smartgears-bom.2.5.0</Change>
</Changeset> </Changeset>
<Changeset component="org.gcube.dataanalysis.dataminer-pool-manager.2-7-1" date="2022-04-06"> <Changeset component="org.gcube.dataanalysis.dataminer-pool-manager.2-7-1" date="2022-04-06">
<Change>Updated to gcube-smartgears-bom.2.1.1 [#23133]</Change> <Change>Updated to gcube-smartgears-bom.2.2.0 [#23133]</Change>
</Changeset> </Changeset>
<Changeset component="org.gcube.dataanalysis.dataminer-pool-manager.2-7-0" date="2020-04-16"> <Changeset component="org.gcube.dataanalysis.dataminer-pool-manager.2-7-0" date="2020-04-16">
<Change>Updated to new Social Networking API [#19081]</Change> <Change>Updated to new Social Networking API [#19081]</Change>

4
pom.xml
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@ -5,7 +5,7 @@
<parent> <parent>
<artifactId>maven-parent</artifactId> <artifactId>maven-parent</artifactId>
<groupId>org.gcube.tools</groupId> <groupId>org.gcube.tools</groupId>
<version>1.1.0</version> <version>1.2.0</version>
<relativePath /> <relativePath />
</parent> </parent>
@ -151,7 +151,7 @@
<dependency> <dependency>
<groupId>org.gcube.distribution</groupId> <groupId>org.gcube.distribution</groupId>
<artifactId>gcube-smartgears-bom</artifactId> <artifactId>gcube-smartgears-bom</artifactId>
<version>2.2.0-SNAPSHOT</version> <version>2.5.0</version>
<type>pom</type> <type>pom</type>
<scope>import</scope> <scope>import</scope>
</dependency> </dependency>

153
src/main/java/org/gcube/dataanalysis/dataminer/poolmanager/rest/RestPoolManager.java
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@ -1,6 +1,5 @@
package org.gcube.dataanalysis.dataminer.poolmanager.rest; package org.gcube.dataanalysis.dataminer.poolmanager.rest;
import java.io.IOException; import java.io.IOException;
import java.net.MalformedURLException; import java.net.MalformedURLException;
import java.net.URL; import java.net.URL;
@ -24,52 +23,44 @@ import org.slf4j.LoggerFactory;
import org.tmatesoft.svn.core.SVNException; import org.tmatesoft.svn.core.SVNException;
@Path("/") @Path("/")
public class RestPoolManager implements PoolManager public class RestPoolManager implements PoolManager {
{ // @Context ServletContext context;
//@Context ServletContext context;
private final Logger logger; private final Logger logger;
private DataminerPoolManager service; private DataminerPoolManager service;
//@Context // @Context
//private ApplicationContext context = ContextProvider.get(); // private ApplicationContext context = ContextProvider.get();
public RestPoolManager() public RestPoolManager() {
{
this.logger = LoggerFactory.getLogger(RestPoolManager.class); this.logger = LoggerFactory.getLogger(RestPoolManager.class);
this.service = new DataminerPoolManager(); this.service = new DataminerPoolManager();
} }
@GET @GET
@Path("/algorithm/stage") @Path("/algorithm/stage")
@Produces("text/plain") @Produces("text/plain")
public String stageAlgorithm( public String stageAlgorithm(@QueryParam("algorithmPackageURL") String algorithmPackageURL,
@QueryParam("algorithmPackageURL") String algorithmPackageURL, @QueryParam("targetVRE") String targetVRE, @QueryParam("category") String category,
@QueryParam("targetVRE") String targetVRE,
@QueryParam("category") String category,
@QueryParam("algorithm_type") String algorithm_type) throws IOException, InterruptedException { @QueryParam("algorithm_type") String algorithm_type) throws IOException, InterruptedException {
this.logger.debug("Stage algorithm method called"); this.logger.debug("Stage algorithm method called");
Algorithm algo = AlgorithmBuilder.create(algorithmPackageURL); Algorithm algo = AlgorithmBuilder.create(algorithmPackageURL);
//String env = context.application().getInitParameter("Environment"); // String env = context.application().getInitParameter("Environment");
return this.service.stageAlgorithm(algo,targetVRE,category,algorithm_type/*,env*/); return this.service.stageAlgorithm(algo, targetVRE, category, algorithm_type/* ,env */);
} }
@GET @GET
@Path("/algorithm/add") @Path("/algorithm/add")
@Produces("text/plain") @Produces("text/plain")
public String publishAlgorithm( public String publishAlgorithm(@QueryParam("algorithmPackageURL") String algorithmPackageURL,
@QueryParam("algorithmPackageURL") String algorithmPackageURL, // @QueryParam("targetVREToken") String targetVREToken,
//@QueryParam("targetVREToken") String targetVREToken, @QueryParam("targetVRE") String targetVRE, @QueryParam("category") String category,
@QueryParam("targetVRE") String targetVRE,
@QueryParam("category") String category,
@QueryParam("algorithm_type") String algorithm_type) throws IOException, InterruptedException { @QueryParam("algorithm_type") String algorithm_type) throws IOException, InterruptedException {
this.logger.debug("Publish algorithm method called"); this.logger.debug("Publish algorithm method called");
Algorithm algo = AlgorithmBuilder.create(algorithmPackageURL); Algorithm algo = AlgorithmBuilder.create(algorithmPackageURL);
//String env = context.application().getInitParameter("Environment"); // String env = context.application().getInitParameter("Environment");
return this.service.publishAlgorithm(algo, /*targetVREToken,*/ targetVRE,category,algorithm_type/*,env*/); return this.service.publishAlgorithm(algo, /* targetVREToken, */ targetVRE, category, algorithm_type/* ,env */);
} }
/* /*
@ -87,7 +78,6 @@ public class RestPoolManager implements PoolManager
return service.getLogById(logUrl); return service.getLogById(logUrl);
} }
@GET @GET
@Path("/monitor") @Path("/monitor")
@Produces("text/plain") @Produces("text/plain")
@ -97,70 +87,77 @@ public class RestPoolManager implements PoolManager
this.logger.debug("Returning Log =" + logUrl); this.logger.debug("Returning Log =" + logUrl);
return service.getMonitorById(logUrl); return service.getMonitorById(logUrl);
} }
@Override
@Override
public Algorithm extractAlgorithm(String url) throws IOException { public Algorithm extractAlgorithm(String url) throws IOException {
// TODO Auto-generated method stub // TODO Auto-generated method stub
return null; return null;
} }
public static void main(String[] args) throws ObjectNotFound, Exception { public static void main(String[] args) throws ObjectNotFound, Exception {
// System.out.println(System.getProperty("user.home")+File.separator+"/gcube/dataminer-pool-manager"); // System.out.println(System.getProperty("user.home")+File.separator+"/gcube/dataminer-pool-manager");
// // ProxySelector.setDefault(new // // ProxySelector.setDefault(new
// // PropertiesBasedProxySelector("/home/ngalante/.proxy-settings")); // // PropertiesBasedProxySelector("/home/ngalante/.proxy-settings"));
// //
ScopeProvider.instance.set("/gcube/devNext"); ScopeProvider.instance.set("/gcube/devNext");
SecurityTokenProvider.instance.set(""); SecurityTokenProvider.instance.set("");
// AuthorizationEntry entry = authorizationService().get("xxxx-xxx-xxxxx-xxxx"); // AuthorizationEntry entry = authorizationService().get("xxxx-xxx-xxxxx-xxxx");
// System.out.println(entry.getContext()); // System.out.println(entry.getContext());
RestPoolManager a = new RestPoolManager(); RestPoolManager a = new RestPoolManager();
a.stageAlgorithm("http://data-d.d4science.org/TSt3cUpDTG1teUJMemxpcXplVXYzV1lBelVHTTdsYjlHbWJQNStIS0N6Yz0"); a.stageAlgorithm("http://data-d.d4science.org/TSt3cUpDTG1teUJMemxpcXplVXYzV1lBelVHTTdsYjlHbWJQNStIS0N6Yz0");
// //a.publishAlgorithm("http://data.d4science.org/MnovRjZIdGV5WlB0WXE5NVNaZnRoRVg0SU8xZWpWQlFHbWJQNStIS0N6Yz0", "xxxx-xxx-xxxx-xxxx","/gcube/devNext/NextNext"); // //a.publishAlgorithm("http://data.d4science.org/MnovRjZIdGV5WlB0WXE5NVNaZnRoRVg0SU8xZWpWQlFHbWJQNStIS0N6Yz0", "xxxx-xxx-xxxx-xxxx","/gcube/devNext/NextNext");
// // PoolManager aa = new DataminerPoolManager(); // // PoolManager aa = new DataminerPoolManager();
// //
} }
// Production Testing
//Production Testing
/* /*
stageAlgorithm(Rproto caller token,pacchetto, category) * stageAlgorithm(Rproto caller token,pacchetto, category)
http://node2-d-d4s.d4science.org:8080/dataminer-pool-manager-1.0.0-SNAPSHOT/rest/algorithm/stage?gcube-token=xxx-xxx-xxx-xxx&algorithmPackageURL=http://data.d4science.org/dENQTTMxdjNZcGRpK0NHd2pvU0owMFFzN0VWemw3Zy9HbWJQNStIS0N6Yz0&category=ICHTHYOP_MODEL * http://node2-d-d4s.d4science.org:8080/dataminer-pool-manager-1.0.0-SNAPSHOT/
* rest/algorithm/stage?gcube-token=xxx-xxx-xxx-xxx&algorithmPackageURL=http://
publishAlgorithm(Rproto caller token, pacchetto, category, target token, target prod vre) * data.d4science.org/
node2-d-d4s.d4science.org:8080/dataminer-pool-manager-1.0.0-SNAPSHOT/rest/algorithm/add?gcube-token=xxxx-xxxx-xxx-xxx&algorithmPackageURL=http://data.d4science.org/dENQTTMxdjNZcGRpK0NHd2pvU0owMFFzN0VWemw3Zy9HbWJQNStIS0N6Yz0&category=ICHTHYOP_MODEL&targetVREToken=xxxx-xxxx-xxxx&targetVRE=/d4science.research-infrastructures.eu/gCubeApps/RPrototypingLab * dENQTTMxdjNZcGRpK0NHd2pvU0owMFFzN0VWemw3Zy9HbWJQNStIS0N6Yz0&category=
* ICHTHYOP_MODEL
getLogById(Rproto caller token, logid) *
http://node2-d-d4s.d4science.org:8080/dataminer-pool-manager-1.0.0-SNAPSHOT/rest/log?gcube-token=xxxx-xxx-xxx-xxx&logUrl= * publishAlgorithm(Rproto caller token, pacchetto, category, target token,
*/ * target prod vre)
* node2-d-d4s.d4science.org:8080/dataminer-pool-manager-1.0.0-SNAPSHOT/rest/
* algorithm/add?gcube-token=xxxx-xxxx-xxx-xxx&algorithmPackageURL=http://data.
//dev Testing * d4science.org/dENQTTMxdjNZcGRpK0NHd2pvU0owMFFzN0VWemw3Zy9HbWJQNStIS0N6Yz0&
* category=ICHTHYOP_MODEL&targetVREToken=xxxx-xxxx-xxxx&targetVRE=/d4science.
* research-infrastructures.eu/gCubeApps/RPrototypingLab
*
* getLogById(Rproto caller token, logid)
* http://node2-d-d4s.d4science.org:8080/dataminer-pool-manager-1.0.0-SNAPSHOT/
* rest/log?gcube-token=xxxx-xxx-xxx-xxx&logUrl=
*/
// dev Testing
/* /*
stageAlgorithm(dev_caller_vre_token,pacchetto, category) * stageAlgorithm(dev_caller_vre_token,pacchetto, category)
http://node2-d-d4s.d4science.org:8080/dataminer-pool-manager-1.0.0-SNAPSHOT/rest/algorithm/stage?gcube-token=xxxx-xxxx-xxxx&algorithmPackageURL=http://data.d4science.org/dENQTTMxdjNZcGRpK0NHd2pvU0owMFFzN0VWemw3Zy9HbWJQNStIS0N6Yz0&category=ICHTHYOP_MODEL * http://node2-d-d4s.d4science.org:8080/dataminer-pool-manager-1.0.0-SNAPSHOT/
* rest/algorithm/stage?gcube-token=xxxx-xxxx-xxxx&algorithmPackageURL=http://
publishAlgorithm(dev_caller_vre_token, pacchetto, category, target token, target prod vre) * data.d4science.org/
http://node2-d-d4s.d4science.org:8080/dataminer-pool-manager-1.0.0-SNAPSHOT/rest/log?gcube-token=xxxx-xxxx-xxx-xxxx&logUrl=450bb7f9-9e38-4bde-8f4d-f3296f95deba * dENQTTMxdjNZcGRpK0NHd2pvU0owMFFzN0VWemw3Zy9HbWJQNStIS0N6Yz0&category=
* ICHTHYOP_MODEL
getLogById(dev_caller_vre_token, logid) *
http://node2-d-d4s.d4science.org:8080/dataminer-pool-manager-1.0.0-SNAPSHOT/rest/log?gcube-token=xxx-xxx-xxx-xxx&logUrl=426c8e35-a624-4710-b612-c90929c32c27 */ * publishAlgorithm(dev_caller_vre_token, pacchetto, category, target token,
* target prod vre)
* http://node2-d-d4s.d4science.org:8080/dataminer-pool-manager-1.0.0-SNAPSHOT/
* rest/log?gcube-token=xxxx-xxxx-xxx-xxxx&logUrl=450bb7f9-9e38-4bde-8f4d-
* f3296f95deba
*
* getLogById(dev_caller_vre_token, logid)
* http://node2-d-d4s.d4science.org:8080/dataminer-pool-manager-1.0.0-SNAPSHOT/
* rest/log?gcube-token=xxx-xxx-xxx-xxx&logUrl=426c8e35-a624-4710-b612-
* c90929c32c27
*/
@Override @Override
public void getLogId(Algorithm algo, String vre) { public void getLogId(Algorithm algo, String vre) {
@ -174,8 +171,6 @@ public class RestPoolManager implements PoolManager
return null; return null;
} }
@Override @Override
public URL getURLfromWorkerLog(String logUrl) throws MalformedURLException, UnknownHostException { public URL getURLfromWorkerLog(String logUrl) throws MalformedURLException, UnknownHostException {
// TODO Auto-generated method stub // TODO Auto-generated method stub
@ -194,37 +189,31 @@ public class RestPoolManager implements PoolManager
return null; return null;
} }
@Override @Override
public List<String> updateSVN(String file, List<String> ldep) throws SVNException { public List<String> updateSVN(String file, List<String> ldep) throws SVNException {
// TODO Auto-generated method stub // TODO Auto-generated method stub
return null; return null;
} }
@Override @Override
public String addAlgorithmToHost(Algorithm algo, String host, boolean test) public String addAlgorithmToHost(Algorithm algo, String host, boolean test)
throws IOException, InterruptedException { throws IOException, InterruptedException {
// TODO Auto-generated method stub // TODO Auto-generated method stub
return null; return null;
} }
@Override @Override
public String addAlgorithmToVRE(Algorithm algo, String vre, boolean test) public String addAlgorithmToVRE(Algorithm algo, String vre, boolean test) throws IOException, InterruptedException {
throws IOException, InterruptedException {
// TODO Auto-generated method stub // TODO Auto-generated method stub
return null; return null;
} }
@Override @Override
public String stageAlgorithm(String algorithmPackageURL) throws IOException, InterruptedException { public String stageAlgorithm(String algorithmPackageURL) throws IOException, InterruptedException {
// TODO Auto-generated method stub // TODO Auto-generated method stub
return null; return null;
} }
@Override @Override
public String publishAlgorithm(String algorithmPackageURL, String targetVREToken, String targetVRE) public String publishAlgorithm(String algorithmPackageURL, String targetVREToken, String targetVRE)
throws IOException, InterruptedException { throws IOException, InterruptedException {
@ -232,12 +221,4 @@ public class RestPoolManager implements PoolManager
return null; return null;
} }
} }

3
src/main/java/org/gcube/dataanalysis/dataminer/poolmanager/util/impl/CheckMethodProduction.java
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@ -63,12 +63,13 @@ public class CheckMethodProduction extends CheckMethod{
//System.out.println(a.checkMethod("dataminer-ghost-t.pre.d4science.org", //System.out.println(a.checkMethod("dataminer-ghost-t.pre.d4science.org",
// "xxx-xxxx-xxx-xx")); // "xxx-xxxx-xxx-xx"));
try try
{ {
a.checkMethod("dataminer-ghost-d.dev.d4science.org", a.checkMethod("dataminer-ghost.cloud-dev.d4science.org",
"xxx-xxx-xxx-xxx"); "xxx-xxx-xxx-xxx");
} catch (Exception e) } catch (Exception e)
{ {

1
src/main/java/org/gcube/dataanalysis/dataminer/poolmanager/util/impl/CheckMethodStaging.java
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@ -78,6 +78,7 @@ public class CheckMethodStaging extends CheckMethod{
//ServiceConfiguration bp = new ServiceConfiguration(); //ServiceConfiguration bp = new ServiceConfiguration();
//// ////
//SecurityTokenProvider.instance.set("xxx-xxx-xxx-xxx"); //SecurityTokenProvider.instance.set("xxx-xxx-xxx-xxx");
//// ////
//if (a.checkMethod(bp.getStagingHost(), SecurityTokenProvider.instance.get())&&a.algoExists(aa)); { //if (a.checkMethod(bp.getStagingHost(), SecurityTokenProvider.instance.get())&&a.algoExists(aa)); {
//System.out.println("ciao"); //System.out.println("ciao");