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43 Commits

Author SHA1 Message Date
Loredana Liccardo cba62f48f0 - method closeconnection in class DatabaseManager modified in order to close the SessionFactory. 
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@100987 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-10-24 16:44:30 +00:00
Loredana Liccardo 71cafbc5df some files updated in previous operations committed 
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@100743 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-10-16 09:09:52 +00:00
Loredana Liccardo 2f313cbbea - bug fixed and founded with the TabularData Database resource that has 2 access points with the same endpoint, username and password values. 
getAccessPoints method in DBResource class modified and equals method defined in AccessPoint class. DBResource, Normalizer, Decider e Guesser classes modified in order manage the exception generated in equals method. Exceptio managed also in algorithms (except ListNames) in database-rm-algorithms components.

- tag version changed in pom file from 1.1.0 to 1.2.0


git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@100742 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-10-16 09:06:28 +00:00
Loredana Liccardo 2986079369 e.printStackTrace added for debug purpose statement for an exception in executeQuery method 
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@100708 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-10-15 11:08:41 +00:00
Loredana Liccardo 9c42affe76 git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@99785 82a268e6-3cf1-43bd-a215-b396298e98cf 2014-09-12 13:42:13 +00:00
Loredana Liccardo 6728db3c04 modification applied to the smartSampleOnTable method of class Sampler. If a table has o row return the exception with message "The table has 0 rows" 
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@99778 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-09-12 12:07:29 +00:00
Loredana Liccardo 77082fa4ad File DestinationDBHibernate.cfg.xml in "cfg" folder of the project renamed in DestinationDBHibernateDBManager.cfg.xml and correction in method initDBSession of the ConectionMannaager class in order to specify this file name. 
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@99649 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-09-10 07:57:17 +00:00
Loredana Liccardo b72e647ea8 bug fixed for the smart smapling (with table col2oct2010-> scientific_names). Corrections in computeSmartSampleWithThreshold method. 
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@99565 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-09-05 15:36:52 +00:00
Loredana Liccardo 5af78b2871 print result's size added in the executeQueryJDBC method in ConnectionManager class. 
pom file version modified from 1.0.0 to 1.1.0(for deploy)

git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@99522 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-09-05 10:02:23 +00:00
Loredana Liccardo 5be390fde8 parameters updated in the SubmitQuery method of DatabaseManagement class.(parameter on path file removed because unusable) 
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@99410 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-09-03 08:11:42 +00:00
Loredana Liccardo 1e191ee9f3 hibernate bug fixed and related to a join tables that have some columns with identical name. Bug resolved using JDBC. ConnectionManager and DatabaseManagement classes modified adding the method "executeQueryJDBC" in ConnectionManager, used only for the submitquery operation 
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@99393 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-09-02 13:14:58 +00:00
Loredana Liccardo ecee3f5fdf timeout for hibernate database connection changed to value 5 seconds.(corrections in ConnectionManager class and printfs added and commented in DatabaseFactory and DatabaseManagement classes) 
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@99376 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-09-01 14:45:00 +00:00
Loredana Liccardo 10488ac084 some printf commented in computeSmartSample and computeSmartSampleWithThreshold for Sampler class 
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@99371 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-09-01 11:00:32 +00:00
Loredana Liccardo 5d77f12fc9 bug fixed in calculation of table's details for a database postgres through the GetTableDetails algorithm. The calculateElements method in DatabaseOperations class has been modified adding "" for a table name. 
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@99349 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-08-29 12:37:42 +00:00
Loredana Liccardo 6942920792 bug fixed in sampling operations and resolved truncating each table'a attribute to 255 characters 
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@99348 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-08-29 11:51:09 +00:00
Loredana Liccardo 6ce1e4d44b bug fixed for sampling in class Sampler for a database mysql about an attribute of a table that could be a keyword.Quotes `` added for all attributes before submitting a query. 
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@99335 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-08-28 15:36:38 +00:00
Loredana Liccardo fe5b1c211b bug fixed in smart e random sampling for a database mysql 
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@99333 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-08-28 13:57:57 +00:00
Loredana Liccardo a2ea87687d - exception management for SQLGrammarException adding a cause message 
- method removeQueryExecution implemented and commented in class ConnectionManager

git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@99191 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-08-01 15:21:17 +00:00
Loredana Liccardo f790f715b7 bug fixed in Sampler and DatabaseOPerations classes to manage tables case sensitive for database Postgres 
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@99145 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-07-31 09:02:47 +00:00
Loredana Liccardo ab97ee8304 bug fixed in class DatabaseManagement: method writeSampleTableIntoFile replaced with method buildMapResult. 
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@99060 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-07-29 10:09:49 +00:00
Loredana Liccardo 78e9c6e288 Methods writeSampleTableIntoFile, writeQueryResultIntoFile, isHexadecimal removed because being commented were not used. 
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@99059 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-07-29 09:30:18 +00:00
Loredana Liccardo c202c94220 methods getFileQueryResult and getFileSampleTableResult commented. 
Methods writeSampleTableIntoFile and writeQueryResultIntoFile removed because being commented were not used.

git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@99055 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-07-29 09:26:38 +00:00
Loredana Liccardo 21d1bb5a27 class DatabaseManagement modified in order to not make available the result in a file csv for submitquery and samplings operations. 
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@99051 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-07-29 08:30:42 +00:00
Loredana Liccardo 6769c97a2d - the connection timeout of about 30 seconds has been managed with a GenericJDBCException. 
- exceptions managed in a different way in method executeQuery of Class ConnectionManager

git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@98992 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-07-25 13:49:09 +00:00
Loredana Liccardo 5f795e85d0 added a timeout about 25-20 seconds.To add the timeout the following classes are been modified: 
- class DatabaseFactory modified adding the initDBConnection method that overrides the properties contained in the hibernate.cfg.xml file.
- method initDBSession in class ConnectionManager modified in order to use the DatabaseFactory (in package utils) 

git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@98967 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-07-25 08:13:25 +00:00
Loredana Liccardo 229f351f7d bugs fixed in showcreatetable and samplings operations. In these operation it is useful to insert the table name in a query as "schema.table" for postgres and "db.table" for mysql. 
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@98907 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-07-23 15:11:58 +00:00
Loredana Liccardo aa3fbea54b bug fixed (updated the output result displayed from the statistical) in DatabaseManagement class related to the bug fixed yesterday. 
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@98872 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-07-22 12:58:20 +00:00
Loredana Liccardo 83df040993 bug fixed to retrieve columns names in a correct order (defined in the database schema) for the sampling operations, for the getTableDetails. Updates in Sampler, DatabasesManager and PostgresTableStructure classes. 
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@98845 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-07-21 15:19:55 +00:00
Loredana Liccardo 7762f7a162 bug corrected in "showCreateTable" method of MySQLTableStructure class (result managed in a correct way using aliasToEntityOrderedMapResultTransformer class). 
Bug fixed in "DatabaseManagement" class in "writeTableIntoFile" method to manage for SubmitQuery e sampling operations tables with one column.

git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@98835 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-07-21 10:57:49 +00:00
Loredana Liccardo ba20c2730e artifactid in pom file modified (for etics component) 
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@97257 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-06-10 17:16:03 +00:00
Loredana Liccardo f5068528fc files profile and changelog modified for etics configuration 
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@97214 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-06-10 13:21:07 +00:00
Loredana Liccardo c3da5a8a55 groupid changed in pom file for the project 
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@97167 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-06-10 08:55:44 +00:00
Loredana Liccardo 00f1af0de8 file pom modified to copy the file profile.xml from folder distro to target 
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@97145 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-06-09 15:02:35 +00:00
Loredana Liccardo 932f2390bb Folder "distro" added 
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@97132 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-06-09 13:22:06 +00:00
Loredana Liccardo 80435cf7e7 package org.gcube.dataanalysis.test removed 
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@96727 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-06-05 09:20:45 +00:00
Loredana Liccardo ce0e91da4a package org.gcube.dataanalysis.test renamed in org.gcube.dataaccess.test in src/test/java 
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@96726 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-06-05 09:16:28 +00:00
Loredana Liccardo fe61b11c54 some bug fixed in DatabasesResourcesManager class to recover a correct result from the submit query (in order to comply with AliasToEntityOrderedMapResultTransformer) 
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@96724 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-06-05 09:03:12 +00:00
Loredana Liccardo a655d2dabb deleted dataanalysis package 
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@96627 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-06-04 14:41:00 +00:00
Loredana Liccardo 0838508a28 git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@96622 82a268e6-3cf1-43bd-a215-b396298e98cf 2014-06-04 14:32:59 +00:00
Loredana Liccardo 20227f444c git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@96617 82a268e6-3cf1-43bd-a215-b396298e98cf 2014-06-04 14:19:59 +00:00
Loredana Liccardo b4ebf6e789 git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@96616 82a268e6-3cf1-43bd-a215-b396298e98cf 2014-06-04 14:13:44 +00:00
Loredana Liccardo e5c13f4050 move the library from data-analysis to data-access 
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@96611 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-06-04 13:56:35 +00:00
Loredana Liccardo cad254b98b Initial import. 
git-svn-id: https://svn.d4science.research-infrastructures.eu/gcube/trunk/data-access/DatabasesResourcesManager@96609 82a268e6-3cf1-43bd-a215-b396298e98cf
 2014-06-04 13:53:17 +00:00