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301 Commits

Author SHA1 Message Date
Claudio Atzori 4ff8007518 added function to set the missing vocabulary names, used in the cleaning workflow as a pre-cleaning step 2020-07-30 16:24:39 +02:00
Miriam Baglioni 0f60436e52 - 2020-07-29 18:00:18 +02:00
Miriam Baglioni 6b63668d3f - 2020-07-29 16:57:45 +02:00
Miriam Baglioni dac9f7cc10 refactorin 2020-07-29 16:56:46 +02:00
Miriam Baglioni 770b71b14a Added new model class to dumop Datasources 2020-07-29 16:55:39 +02:00
Miriam Baglioni c760d16936 removed the collected from element from the entities 2020-07-29 16:55:08 +02:00
Miriam Baglioni 6a499c6b7a added hashCode to relation to avoid to produce multiple identical relations 2020-07-29 16:54:16 +02:00
Miriam Baglioni 00f2b8410a changed the definition of the model to intesert porvenance information to some classes 2020-07-24 17:23:57 +02:00
Miriam Baglioni c0f3059676 added needed structures to ModelSupport 2020-07-24 17:22:39 +02:00
Miriam Baglioni 332258d199 split the classes related to the communities dump and to the whole graph dump 2020-07-24 17:21:48 +02:00
Miriam Baglioni a2f01e5259 added getter and setter 2020-07-20 18:54:17 +02:00
Miriam Baglioni 40bbe94f7c merge with master fork 2020-07-20 18:10:03 +02:00
Miriam Baglioni e47ea9349c extended some types by adding provenance as the couple (provenance, trust) and moved some classes to be used by the complete graph dump also 2020-07-20 17:46:27 +02:00
Claudio Atzori 32f5e466e3 imports cleanup 2020-07-20 17:42:58 +02:00
Sandro La Bruzzo a7d3977481 added generation of EBI Dataset 2020-07-10 14:44:50 +02:00
Miriam Baglioni 250fd1c854 merge branch with fork master 2020-06-22 16:25:48 +02:00
Claudio Atzori 9cd27183b6 [maven-release-plugin] prepare for next development iteration 2020-06-22 11:27:44 +02:00
Claudio Atzori 1e3dab0631 [maven-release-plugin] prepare release dhp-1.2.3 2020-06-22 11:27:39 +02:00
Miriam Baglioni df80ae5c1b merge branch with fork master 2020-06-22 10:51:23 +02:00
Claudio Atzori 7d416f08d8 graph cleaning workflow: set hostedby to unknown repository when defined as NULL 2020-06-22 09:50:43 +02:00
Miriam Baglioni 65bf312360 merge branch with fork master 2020-06-18 11:35:27 +02:00
Miriam Baglioni 8211cbb9fe extension of Result to contain all the properties owned by any result type 2020-06-18 11:23:52 +02:00
Miriam Baglioni bc8611a95a added new resources for testing 2020-06-18 11:19:20 +02:00
Sandro La Bruzzo 9bf67f5de1 resolved conflicts 2020-06-17 09:15:43 +02:00
Sandro La Bruzzo 1d4275acc4 implemented first version of exportation of Scholexplorer into ActionSet 2020-06-17 09:10:38 +02:00
miconis 5233b15265 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-06-16 18:31:19 +02:00
miconis 11b77b9f4e json dumps for entity merge test modified to fit the new model. title merge adjusted to fix the error 2020-06-16 18:31:11 +02:00
Claudio Atzori 306669209f code formatting 2020-06-16 16:54:44 +02:00
Claudio Atzori 603b1bd0bb Merge branch 'master' into dhp_oaf_model 2020-06-16 15:43:59 +02:00
Miriam Baglioni 9dd3ef22c5 merge branch with fork master 2020-06-15 11:23:26 +02:00
Miriam Baglioni 56e70573c2 - 2020-06-15 11:06:56 +02:00
Miriam Baglioni 20b9e67728 added new class funder 2020-06-15 11:06:18 +02:00
Claudio Atzori c4d9f1837f [maven-release-plugin] prepare for next development iteration 2020-06-12 12:21:08 +02:00
Claudio Atzori f0746a7605 [maven-release-plugin] prepare release dhp-1.2.2 2020-06-12 12:21:03 +02:00
Claudio Atzori 463489f59f code formatting 2020-06-12 12:03:25 +02:00
Claudio Atzori 4bcad1c9c3 Merge branch 'graph_cleaning' 2020-06-12 11:40:25 +02:00
Alessia Bardi ed8879ed8b deprecate PUBLICATION_DATASET 2020-06-12 10:55:56 +02:00
Alessia Bardi 3ade2631b3 Constants for new rels: citations and reviews 2020-06-12 10:52:12 +02:00
Claudio Atzori ba8a024af9 avoid NPEs merging titles 2020-06-12 10:45:11 +02:00
Claudio Atzori a2fdf85ba1 WIP: graph cleaner implementation 2020-06-09 19:52:53 +02:00
Miriam Baglioni 206abba48c merge branch with fork master 2020-06-09 15:41:14 +02:00
Miriam Baglioni 5121cbaf6a new classes for external dump. Only classes functional to dump products 2020-06-09 15:37:46 +02:00
Miriam Baglioni f232db84e9 new classes for external dump. Only classes functional to dump products 2020-06-08 15:11:37 +02:00
Claudio Atzori 25a093b1a4 integrated changes from master 2020-06-08 15:04:00 +02:00
Claudio Atzori 45973b5743 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-06-08 15:01:34 +02:00
Claudio Atzori 94533b71bc added comments for model fields removal 2020-06-08 15:01:21 +02:00
Claudio Atzori b2f9564f13 WIP: fixed PrepareRelationsJob; parallel implementation of CreateRelatedEntitiesJob_phase2, now works by OafType; introduced custom aggregator in AdjacencyListBuilderJob 2020-05-29 10:58:15 +02:00
Sandro La Bruzzo b87b3ddb6b changed mapping ORCIDToOAF 2020-05-29 09:32:04 +02:00
Sandro La Bruzzo 7d29b61c62 code refactor 2020-05-28 09:57:46 +02:00
Miriam Baglioni dd1e0b93b8 added merge for Programme 2020-05-27 17:40:32 +02:00
Miriam Baglioni f3dcca0dd0 added equals for programme 2020-05-27 17:23:34 +02:00
Miriam Baglioni 92e3a52e91 merge branch with fork master 2020-05-26 15:57:51 +02:00
Claudio Atzori 7b288a94cb code formatting 2020-05-26 09:54:13 +02:00
Claudio Atzori 7582532e73 [maven-release-plugin] prepare for next development iteration 2020-05-25 19:48:18 +02:00
Claudio Atzori 01c2e93395 [maven-release-plugin] prepare release dhp-1.2.1 2020-05-25 19:48:14 +02:00
Claudio Atzori ae04234472 DataInfo.deletedbyinference is false by default 2020-05-25 19:32:48 +02:00
miconis da1e5cf557 implementation of the result title merge. main title with higher trust, distinct between the others 2020-05-25 18:02:57 +02:00
Claudio Atzori 4b34872b44 using Objects.equals to check Field<T> equivalence 2020-05-25 10:14:15 +02:00
Claudio Atzori 0ab0206b4d removed null objects from flattened Field<T> in mergeLists 2020-05-25 10:11:41 +02:00
Claudio Atzori de108f54d6 code formatting 2020-05-23 10:21:19 +02:00
Claudio Atzori 6b56cae57d added mapping for bestaccessrights 2020-05-23 09:57:39 +02:00
Miriam Baglioni 24daa1deaa added to the Project class a new field that is the list of programmes 2020-05-20 10:28:16 +02:00
Miriam Baglioni d323100af0 added the new Programme POJO. It contains the code and the description of the programme 2020-05-20 10:27:27 +02:00
Miriam Baglioni 22cb9e0da7 simple code to get file from URL 2020-05-15 18:18:01 +02:00
Miriam Baglioni 3aaad753fd Merge branch 'master' into dhp_oaf_model 2020-05-15 15:55:23 +02:00
Claudio Atzori b7e198475a added common methods to create HiveDB table identifiers 2020-05-15 10:20:07 +02:00
Miriam Baglioni 42085e8d99 added some constants 2020-05-14 18:22:28 +02:00
Claudio Atzori c6b028f2af code formatting 2020-05-11 17:38:08 +02:00
Claudio Atzori 637653cba3 integrated changes from master 2020-05-11 14:05:25 +02:00
Miriam Baglioni 2abb84877d Merge branch 'master' into blacklist 2020-05-11 10:37:49 +02:00
Miriam Baglioni bb59bdd60f merge upstream 2020-05-11 10:33:17 +02:00
Miriam Baglioni 871e079b45 merged with master 2020-05-11 10:20:00 +02:00
Claudio Atzori 60c40618d3 [maven-release-plugin] prepare for next development iteration 2020-05-11 10:17:14 +02:00
Claudio Atzori c267d958d5 [maven-release-plugin] prepare release dhp-1.2.0 2020-05-11 10:17:10 +02:00
Miriam Baglioni 391b2399cc merge upstream 2020-05-11 10:08:51 +02:00
Claudio Atzori 42f1a2bf94 bumped project version to 1.2.0-SNAPSHOT 2020-05-11 10:05:57 +02:00
Miriam Baglioni 32301451ec merge upstream 2020-05-11 09:42:23 +02:00
Claudio Atzori 0ccc864ad9 [maven-release-plugin] prepare for next development iteration 2020-05-08 17:01:31 +02:00
Claudio Atzori 6e47c724c6 [maven-release-plugin] prepare release dhp-1.1.7 2020-05-08 17:01:27 +02:00
Miriam Baglioni 28556507e7 - 2020-05-08 12:54:52 +02:00
Miriam Baglioni 4c94231cad merge with master fork 2020-05-08 12:25:57 +02:00
Claudio Atzori 62ea19f1d3 introduced mapping for ExternalReferences, made urls defined within an instance unique 2020-05-08 09:43:26 +02:00
Miriam Baglioni 182225becb Merge branch 'master' of https://code-repo.d4science.org/miriam.baglioni/dnet-hadoop 2020-05-07 11:38:17 +02:00
Miriam Baglioni 5efae3acb9 new workflow for job3 2020-05-07 11:38:10 +02:00
Claudio Atzori 128c3bf1c8 restored Author bean with simple getter/setter, author pid addition moved into dedicated implementation SparkOrcidToResultFromSemRelJob3 2020-05-07 11:14:56 +02:00
Claudio Atzori 17860d3ab6 general changes in the RAW graph mapping: missing collectedfrom/hostedby causes records to be skipped; factored out most of the constants in ModelConstants class (dhp-schemas) 2020-05-06 13:20:02 +02:00
Claudio Atzori 405f495d54 code formatting 2020-05-04 19:18:12 +02:00
Claudio Atzori c54d7ca18c example measures in serialization test 2020-05-04 17:02:40 +02:00
Claudio Atzori 11938dac5e this commit adds: validated/validationDate to relationships; measure type and simple unit test to indicate the relative serialization 2020-05-04 16:47:07 +02:00
Claudio Atzori 24d8d097b6 sync with master branch 2020-05-04 16:44:13 +02:00
Claudio Atzori de5fbe325c bits of javadoc 2020-05-04 16:00:48 +02:00
Miriam Baglioni 4b0bd91012 - 2020-04-30 12:45:28 +02:00
Miriam Baglioni 3abb76ff7a merge with upstream 2020-04-30 11:15:54 +02:00
Miriam Baglioni 638a3c465b - 2020-04-30 11:05:17 +02:00
Miriam Baglioni 564e5d6279 added new information in support of blacklist reader 2020-04-30 10:22:58 +02:00
Claudio Atzori 439c6255a2 cleanup 2020-04-29 19:09:07 +02:00
Claudio Atzori 77ac995770 cleaned up poms, added descriptions 2020-04-29 18:44:17 +02:00
Miriam Baglioni 869f576273 added hash map for relationship entityType id prefix, and relation inverse 2020-04-29 18:14:52 +02:00
Miriam Baglioni b85ad7012a reads the blacklist from the blacklist db and writes it as a set of relations on hdfs 2020-04-29 17:29:49 +02:00
Miriam Baglioni f7695e833c resolved conflicts 2020-04-29 11:41:31 +02:00
Claudio Atzori 6f5b899038 reformatted code according to the updated style descriptor 2020-04-28 11:23:29 +02:00
Claudio Atzori a0bdbacdae switched automatic code formatting plugin to net.revelc.code.formatter:formatter-maven-plugin 2020-04-27 14:52:31 +02:00
Claudio Atzori 7a3f8085f7 switched automatic code formatting plugin to net.revelc.code.formatter:formatter-maven-plugin 2020-04-27 14:45:40 +02:00
Miriam Baglioni 5dccbe13db merge with upstream 2020-04-27 10:43:59 +02:00
Claudio Atzori 268462623a refined definition of equals and hash methods for Oaf model classes, now based on entity identifier, while relations consider sourceid, targetid and relationship semantic; Factored out function to group Oaf objects in grouping operations; Raw graph creation procedure merges entities and relationships providing the same identity 2020-04-24 14:42:01 +02:00
Claudio Atzori 5100527400 added default value for resulttype field 2020-04-23 19:14:37 +02:00
Miriam Baglioni 04fc223346 add method addPid 2020-04-23 11:07:44 +02:00
Miriam Baglioni 259525cb93 Merge remote-tracking branch 'upstream/master' 2020-04-21 18:33:46 +02:00
Claudio Atzori d772d967aa restored changes from master branch 2020-04-20 18:53:06 +02:00
miconis 4da13e4570 Revert "Merge branch 'master' into deduptesting" 
This reverts commit 772f75d167, reversing
changes made to 5f45f2c77f.
 2020-04-20 16:04:49 +02:00
Claudio Atzori d714bfb4d4 collectedfrom field moved in common parent class Oaf.java 2020-04-20 12:25:19 +02:00
Miriam Baglioni 454b8a6a29 Merge remote-tracking branch 'upstream/master' 2020-04-18 14:09:44 +02:00
Claudio Atzori ad7a131b18 introduced common project code formatting plugin, works on the commit hook, based on https://github.com/Cosium/git-code-format-maven-plugin, applied to each java class in the project 2020-04-18 12:42:58 +02:00
Miriam Baglioni 7d9fd75020 add method addPid 2020-04-17 17:13:48 +02:00
Sandro La Bruzzo 5e2fa996aa fixed problem with conversion of long into string 2020-04-17 12:11:51 +02:00
Sandro La Bruzzo c36239e693 fixed incremental indexing 2020-04-14 17:47:36 +02:00
Claudio Atzori cc67dbff81 typo in text 2020-04-14 17:11:55 +02:00
Claudio Atzori 8b2043c7b1 introducing List<KeyValue> generic container for Relation specific properties. Ref ticket https://issue.openaire.research-infrastructures.eu/issues/5512 2020-04-14 16:43:40 +02:00
Claudio Atzori d74e128aa6 Utility classes moved in dhp-common and dhp-schemas 2020-04-07 11:56:22 +02:00
Claudio Atzori c57cf679ca Merge branch 'provision_dataset' 2020-04-07 08:56:58 +02:00
Claudio Atzori 3d1b637cab dataset based provision WIP 2020-04-04 14:03:43 +02:00
Przemysław Jacewicz 51ff3b4e81 [dhp-schemas] added safeguard against casting exception in mergeFrom methods and null-safe handling of collectedfrom collection for relation 2020-04-01 18:28:23 +02:00
przemek 9d1d18d4b9 Merge branch 'master' into przemyslawjacewicz_actionmanager_impl_prototype 2020-03-31 12:04:58 +02:00
Claudio Atzori 377e1ba840 [maven-release-plugin] prepare for next development iteration 2020-03-30 20:06:00 +02:00
Claudio Atzori 76d9315129 [maven-release-plugin] prepare release dhp-1.1.6 2020-03-30 20:05:56 +02:00
Sandro La Bruzzo 0cd022ad6a merge with master 2020-03-26 14:08:29 +01:00
Claudio Atzori 4753662edd removed unnecessary dependency 2020-03-26 09:03:43 +01:00
Claudio Atzori 3e8f6981c4 dhp-schemas tests upgraded to junit5 2020-03-25 17:38:58 +01:00
Claudio Atzori 23668d4a6a WIP adopting junit5 2020-03-25 16:49:45 +01:00
Claudio Atzori a226198a13 WIP adopting junit5 2020-03-25 16:47:39 +01:00
Michele Artini ebe45003d9 fixed some junit packages 2020-03-25 16:45:03 +01:00
Michele Artini d9bfdcd607 updated poms 2020-03-25 16:31:12 +01:00
przemek 638b78f96a Merge remote-tracking branch 'origin/master' into przemyslawjacewicz_actionmanager_impl_prototype 2020-03-19 15:12:56 +01:00
Claudio Atzori 1850a02ae4 added simpler, AtomicAction replacement, based on the dhp.Oaf model 2020-03-19 10:44:16 +01:00
Claudio Atzori 23a929177d updates to the graph require this to be an actual class 2020-03-13 14:56:35 +01:00
Sandro La Bruzzo addaaa091f migrate relation from RDD to Dataset 2020-03-13 09:13:20 +01:00
Przemysław Jacewicz f7454a9ed8 Added equals and hashCode for OAF types 2020-03-11 16:57:28 +01:00
Michele Artini 4c94e74a84 Added a missing dependency 2020-02-20 11:43:32 +01:00
Claudio Atzori d42dde52ba implemented method to merge relations 2020-02-19 17:29:05 +01:00
Claudio Atzori 5bae30f399 adding readme for dhp-schema 2020-02-17 13:38:33 +01:00
Claudio Atzori 1ee1baa8c0 Merge branch 'master' into provision_indexing 2020-02-13 18:17:07 +01:00
Claudio Atzori a3d0b57b25 [maven-release-plugin] prepare for next development iteration 2020-02-13 18:11:33 +01:00
Claudio Atzori 6ed9a15bc8 [maven-release-plugin] prepare release dhp-1.1.5 2020-02-13 18:11:31 +01:00
Claudio Atzori 49e648f7c3 bumped version 2020-02-13 18:09:31 +01:00
Claudio Atzori 11cfd6bd9a integrated changes from master branch 2020-02-13 17:27:07 +01:00
Claudio Atzori bbf1b611b9 refereed, processingchargeamount and processingchargecurrency moved inside the Instance element. Introduced specific type to model Result's countries 2020-02-13 17:21:11 +01:00
Claudio Atzori d3b96f102b builder pattern screws up the Parquet schema inference method, avoid using it in the bean definitions 2020-02-04 14:10:58 +01:00
Claudio Atzori ed290ca8d7 builder pattern 2020-02-03 10:35:51 +01:00
Claudio Atzori 1ecca69f49 added annotation to ignore method during the serialization 2020-01-30 17:45:28 +01:00
Sandro La Bruzzo 19a80e4638 implemented workfow for aggregation and generation of infospace graph 2020-01-24 09:58:55 +01:00