forked from D-Net/dnet-hadoop
general changes in the RAW graph mapping: missing collectedfrom/hostedby causes records to be skipped; factored out most of the constants in ModelConstants class (dhp-schemas)
This commit is contained in:
parent
fdfecc9578
commit
17860d3ab6
|
|
@ -6,36 +6,83 @@ import eu.dnetlib.dhp.schema.oaf.Qualifier;
|
|||
public class ModelConstants {
|
||||
|
||||
public static final String DNET_RESULT_TYPOLOGIES = "dnet:result_typologies";
|
||||
public static final String DNET_PUBLICATION_RESOURCE = "dnet:publication_resource";
|
||||
public static final String DNET_ACCESS_MODES = "dnet:access_modes";
|
||||
public static final String DNET_LANGUAGES = "dnet:languages";
|
||||
public static final String DNET_PID_TYPES = "dnet:pid_types";
|
||||
public static final String DNET_DATA_CITE_DATE = "dnet:dataCite_date";
|
||||
public static final String DNET_DATA_CITE_RESOURCE = "dnet:dataCite_resource";
|
||||
public static final String DNET_PROVENANCE_ACTIONS = "dnet:provenanceActions";
|
||||
|
||||
public static final String SYSIMPORT_CROSSWALK_REPOSITORY = "sysimport:crosswalk:repository";
|
||||
public static final String SYSIMPORT_CROSSWALK_ENTITYREGISTRY = "sysimport:crosswalk:entityregistry";
|
||||
public static final String USER_CLAIM = "user:claim";
|
||||
|
||||
public static final String DATASET_RESULTTYPE_CLASSID = "dataset";
|
||||
public static final String PUBLICATION_RESULTTYPE_CLASSID = "publication";
|
||||
public static final String SOFTWARE_RESULTTYPE_CLASSID = "software";
|
||||
public static final String ORP_RESULTTYPE_CLASSID = "other";
|
||||
|
||||
public static Qualifier PUBLICATION_DEFAULT_RESULTTYPE = new Qualifier();
|
||||
public static Qualifier DATASET_DEFAULT_RESULTTYPE = new Qualifier();
|
||||
public static Qualifier SOFTWARE_DEFAULT_RESULTTYPE = new Qualifier();
|
||||
public static Qualifier ORP_DEFAULT_RESULTTYPE = new Qualifier();
|
||||
public static final String RESULT_RESULT = "resultResult";
|
||||
public static final String PUBLICATION_DATASET = "publicationDataset";
|
||||
public static final String IS_RELATED_TO = "isRelatedTo";
|
||||
public static final String SUPPLEMENT = "supplement";
|
||||
public static final String IS_SUPPLEMENT_TO = "isSupplementTo";
|
||||
public static final String IS_SUPPLEMENTED_BY = "isSupplementedBy";
|
||||
public static final String PART = "part";
|
||||
public static final String IS_PART_OF = "IsPartOf";
|
||||
public static final String HAS_PARTS = "HasParts";
|
||||
public static final String RELATIONSHIP = "relationship";
|
||||
|
||||
static {
|
||||
PUBLICATION_DEFAULT_RESULTTYPE.setClassid(PUBLICATION_RESULTTYPE_CLASSID);
|
||||
PUBLICATION_DEFAULT_RESULTTYPE.setClassname(PUBLICATION_RESULTTYPE_CLASSID);
|
||||
PUBLICATION_DEFAULT_RESULTTYPE.setSchemeid(DNET_RESULT_TYPOLOGIES);
|
||||
PUBLICATION_DEFAULT_RESULTTYPE.setSchemename(DNET_RESULT_TYPOLOGIES);
|
||||
public static final String RESULT_PROJECT = "resultProject";
|
||||
public static final String OUTCOME = "outcome";
|
||||
public static final String IS_PRODUCED_BY = "isProducedBy";
|
||||
public static final String PRODUCES = "produces";
|
||||
|
||||
DATASET_DEFAULT_RESULTTYPE.setClassid(DATASET_RESULTTYPE_CLASSID);
|
||||
DATASET_DEFAULT_RESULTTYPE.setClassname(DATASET_RESULTTYPE_CLASSID);
|
||||
DATASET_DEFAULT_RESULTTYPE.setSchemeid(DNET_RESULT_TYPOLOGIES);
|
||||
DATASET_DEFAULT_RESULTTYPE.setSchemename(DNET_RESULT_TYPOLOGIES);
|
||||
public static final String DATASOURCE_ORGANIZATION = "datasourceOrganization";
|
||||
public static final String PROVISION = "provision";
|
||||
public static final String IS_PROVIDED_BY = "isProvidedBy";
|
||||
public static final String PROVIDES = "provides";
|
||||
|
||||
SOFTWARE_DEFAULT_RESULTTYPE.setClassid(SOFTWARE_RESULTTYPE_CLASSID);
|
||||
SOFTWARE_DEFAULT_RESULTTYPE.setClassname(SOFTWARE_RESULTTYPE_CLASSID);
|
||||
SOFTWARE_DEFAULT_RESULTTYPE.setSchemeid(DNET_RESULT_TYPOLOGIES);
|
||||
SOFTWARE_DEFAULT_RESULTTYPE.setSchemename(DNET_RESULT_TYPOLOGIES);
|
||||
public static final String PROJECT_ORGANIZATION = "projectOrganization";
|
||||
public static final String PARTICIPATION = "participation";
|
||||
public static final String HAS_PARTICIPANT = "hasParticipant";
|
||||
public static final String IS_PARTICIPANT = "isParticipant";
|
||||
|
||||
ORP_DEFAULT_RESULTTYPE.setClassid(ORP_RESULTTYPE_CLASSID);
|
||||
ORP_DEFAULT_RESULTTYPE.setClassname(ORP_RESULTTYPE_CLASSID);
|
||||
ORP_DEFAULT_RESULTTYPE.setSchemeid(DNET_RESULT_TYPOLOGIES);
|
||||
ORP_DEFAULT_RESULTTYPE.setSchemename(DNET_RESULT_TYPOLOGIES);
|
||||
public static final Qualifier PUBLICATION_DEFAULT_RESULTTYPE = qualifier(
|
||||
PUBLICATION_RESULTTYPE_CLASSID, PUBLICATION_RESULTTYPE_CLASSID,
|
||||
DNET_RESULT_TYPOLOGIES, DNET_RESULT_TYPOLOGIES);
|
||||
|
||||
public static final Qualifier DATASET_DEFAULT_RESULTTYPE = qualifier(
|
||||
DATASET_RESULTTYPE_CLASSID, DATASET_RESULTTYPE_CLASSID,
|
||||
DNET_RESULT_TYPOLOGIES, DNET_RESULT_TYPOLOGIES);
|
||||
|
||||
public static final Qualifier SOFTWARE_DEFAULT_RESULTTYPE = qualifier(
|
||||
SOFTWARE_RESULTTYPE_CLASSID, SOFTWARE_RESULTTYPE_CLASSID,
|
||||
DNET_RESULT_TYPOLOGIES, DNET_RESULT_TYPOLOGIES);
|
||||
|
||||
public static final Qualifier ORP_DEFAULT_RESULTTYPE = qualifier(
|
||||
ORP_RESULTTYPE_CLASSID, ORP_RESULTTYPE_CLASSID,
|
||||
DNET_RESULT_TYPOLOGIES, DNET_RESULT_TYPOLOGIES);
|
||||
|
||||
public static final Qualifier REPOSITORY_PROVENANCE_ACTIONS = qualifier(
|
||||
SYSIMPORT_CROSSWALK_REPOSITORY, SYSIMPORT_CROSSWALK_REPOSITORY,
|
||||
DNET_PROVENANCE_ACTIONS, DNET_PROVENANCE_ACTIONS);
|
||||
|
||||
public static final Qualifier ENTITYREGISTRY_PROVENANCE_ACTION = qualifier(
|
||||
SYSIMPORT_CROSSWALK_ENTITYREGISTRY, SYSIMPORT_CROSSWALK_ENTITYREGISTRY,
|
||||
DNET_PROVENANCE_ACTIONS, DNET_PROVENANCE_ACTIONS);
|
||||
|
||||
private static Qualifier qualifier(
|
||||
final String classid,
|
||||
final String classname,
|
||||
final String schemeid,
|
||||
final String schemename) {
|
||||
final Qualifier q = new Qualifier();
|
||||
q.setClassid(classid);
|
||||
q.setClassname(classname);
|
||||
q.setSchemeid(schemeid);
|
||||
q.setSchemename(schemename);
|
||||
return q;
|
||||
}
|
||||
}
|
||||
|
|
|
|||
|
|
@ -10,6 +10,7 @@ import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.listFields;
|
|||
import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.oaiIProvenance;
|
||||
import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.qualifier;
|
||||
import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.structuredProperty;
|
||||
import static eu.dnetlib.dhp.schema.common.ModelConstants.*;
|
||||
|
||||
import java.util.ArrayList;
|
||||
import java.util.Arrays;
|
||||
|
|
@ -24,7 +25,6 @@ import org.dom4j.DocumentFactory;
|
|||
import org.dom4j.DocumentHelper;
|
||||
import org.dom4j.Node;
|
||||
|
||||
import eu.dnetlib.dhp.oa.graph.raw.common.MigrationConstants;
|
||||
import eu.dnetlib.dhp.schema.oaf.Author;
|
||||
import eu.dnetlib.dhp.schema.oaf.Context;
|
||||
import eu.dnetlib.dhp.schema.oaf.DataInfo;
|
||||
|
|
@ -48,6 +48,21 @@ public abstract class AbstractMdRecordToOafMapper {
|
|||
|
||||
protected final Map<String, String> code2name;
|
||||
|
||||
protected static final String DATACITE_SCHEMA_KERNEL_4 = "http://datacite.org/schema/kernel-4";
|
||||
protected static final String DATACITE_SCHEMA_KERNEL_3 = "http://datacite.org/schema/kernel-3";
|
||||
|
||||
protected static final Map<String, String> nsContext = new HashMap<>();
|
||||
|
||||
static {
|
||||
nsContext.put("dr", "http://www.driver-repository.eu/namespace/dr");
|
||||
nsContext.put("dri", "http://www.driver-repository.eu/namespace/dri");
|
||||
nsContext.put("oaf", "http://namespace.openaire.eu/oaf");
|
||||
nsContext.put("oai", "http://www.openarchives.org/OAI/2.0/");
|
||||
nsContext.put("prov", "http://www.openarchives.org/OAI/2.0/provenance");
|
||||
nsContext.put("dc", "http://purl.org/dc/elements/1.1/");
|
||||
nsContext.put("datacite", DATACITE_SCHEMA_KERNEL_3);
|
||||
}
|
||||
|
||||
protected static final Qualifier MAIN_TITLE_QUALIFIER = qualifier(
|
||||
"main title", "main title", "dnet:dataCite_title", "dnet:dataCite_title");
|
||||
|
||||
|
|
@ -57,31 +72,27 @@ public abstract class AbstractMdRecordToOafMapper {
|
|||
|
||||
public List<Oaf> processMdRecord(final String xml) {
|
||||
try {
|
||||
final Map<String, String> nsContext = new HashMap<>();
|
||||
nsContext.put("dr", "http://www.driver-repository.eu/namespace/dr");
|
||||
nsContext.put("dri", "http://www.driver-repository.eu/namespace/dri");
|
||||
nsContext.put("oaf", "http://namespace.openaire.eu/oaf");
|
||||
nsContext.put("oai", "http://www.openarchives.org/OAI/2.0/");
|
||||
nsContext.put("prov", "http://www.openarchives.org/OAI/2.0/provenance");
|
||||
nsContext.put("dc", "http://purl.org/dc/elements/1.1/");
|
||||
nsContext.put("datacite", "http://datacite.org/schema/kernel-3");
|
||||
DocumentFactory.getInstance().setXPathNamespaceURIs(nsContext);
|
||||
|
||||
final Document doc = DocumentHelper
|
||||
.parseText(
|
||||
xml
|
||||
.replaceAll(
|
||||
"http://datacite.org/schema/kernel-4", "http://datacite.org/schema/kernel-3"));
|
||||
xml.replaceAll(DATACITE_SCHEMA_KERNEL_4, DATACITE_SCHEMA_KERNEL_3));
|
||||
|
||||
final String type = doc.valueOf("//dr:CobjCategory/@type");
|
||||
final KeyValue collectedFrom = keyValue(
|
||||
createOpenaireId(10, doc.valueOf("//oaf:collectedFrom/@id"), true),
|
||||
doc.valueOf("//oaf:collectedFrom/@name"));
|
||||
final KeyValue collectedFrom = getProvenanceDatasource(
|
||||
doc, "//oaf:collectedFrom/@id", "//oaf:collectedFrom/@name");
|
||||
|
||||
if (collectedFrom == null) {
|
||||
return null;
|
||||
}
|
||||
|
||||
final KeyValue hostedBy = StringUtils.isBlank(doc.valueOf("//oaf:hostedBy/@id"))
|
||||
? collectedFrom
|
||||
: keyValue(
|
||||
createOpenaireId(10, doc.valueOf("//oaf:hostedBy/@id"), true),
|
||||
doc.valueOf("//oaf:hostedBy/@name"));
|
||||
: getProvenanceDatasource(doc, "//oaf:hostedBy/@id", "//oaf:hostedBy/@name");
|
||||
|
||||
if (hostedBy == null) {
|
||||
return null;
|
||||
}
|
||||
|
||||
final DataInfo info = prepareDataInfo(doc);
|
||||
final long lastUpdateTimestamp = new Date().getTime();
|
||||
|
|
@ -92,6 +103,19 @@ public abstract class AbstractMdRecordToOafMapper {
|
|||
}
|
||||
}
|
||||
|
||||
private KeyValue getProvenanceDatasource(Document doc, String xpathId, String xpathName) {
|
||||
final String dsId = doc.valueOf(xpathId);
|
||||
final String dsName = doc.valueOf(xpathName);
|
||||
|
||||
if (StringUtils.isBlank(dsId) | StringUtils.isBlank(dsName)) {
|
||||
return null;
|
||||
}
|
||||
|
||||
return keyValue(
|
||||
createOpenaireId(10, dsId, true),
|
||||
dsName);
|
||||
}
|
||||
|
||||
protected List<Oaf> createOafs(
|
||||
final Document doc,
|
||||
final String type,
|
||||
|
|
@ -107,14 +131,14 @@ public abstract class AbstractMdRecordToOafMapper {
|
|||
case "publication":
|
||||
final Publication p = new Publication();
|
||||
populateResultFields(p, doc, collectedFrom, hostedBy, info, lastUpdateTimestamp);
|
||||
p.setResulttype(MigrationConstants.PUBLICATION_RESULTTYPE_QUALIFIER);
|
||||
p.setResulttype(PUBLICATION_DEFAULT_RESULTTYPE);
|
||||
p.setJournal(prepareJournal(doc, info));
|
||||
oafs.add(p);
|
||||
break;
|
||||
case "dataset":
|
||||
final Dataset d = new Dataset();
|
||||
populateResultFields(d, doc, collectedFrom, hostedBy, info, lastUpdateTimestamp);
|
||||
d.setResulttype(MigrationConstants.DATASET_RESULTTYPE_QUALIFIER);
|
||||
d.setResulttype(PUBLICATION_DEFAULT_RESULTTYPE);
|
||||
d.setStoragedate(prepareDatasetStorageDate(doc, info));
|
||||
d.setDevice(prepareDatasetDevice(doc, info));
|
||||
d.setSize(prepareDatasetSize(doc, info));
|
||||
|
|
@ -127,7 +151,7 @@ public abstract class AbstractMdRecordToOafMapper {
|
|||
case "software":
|
||||
final Software s = new Software();
|
||||
populateResultFields(s, doc, collectedFrom, hostedBy, info, lastUpdateTimestamp);
|
||||
s.setResulttype(MigrationConstants.SOFTWARE_RESULTTYPE_QUALIFIER);
|
||||
s.setResulttype(SOFTWARE_DEFAULT_RESULTTYPE);
|
||||
s.setDocumentationUrl(prepareSoftwareDocumentationUrls(doc, info));
|
||||
s.setLicense(prepareSoftwareLicenses(doc, info));
|
||||
s.setCodeRepositoryUrl(prepareSoftwareCodeRepositoryUrl(doc, info));
|
||||
|
|
@ -138,7 +162,7 @@ public abstract class AbstractMdRecordToOafMapper {
|
|||
default:
|
||||
final OtherResearchProduct o = new OtherResearchProduct();
|
||||
populateResultFields(o, doc, collectedFrom, hostedBy, info, lastUpdateTimestamp);
|
||||
o.setResulttype(MigrationConstants.OTHER_RESULTTYPE_QUALIFIER);
|
||||
o.setResulttype(ORP_DEFAULT_RESULTTYPE);
|
||||
o.setContactperson(prepareOtherResearchProductContactPersons(doc, info));
|
||||
o.setContactgroup(prepareOtherResearchProductContactGroups(doc, info));
|
||||
o.setTool(prepareOtherResearchProductTools(doc, info));
|
||||
|
|
@ -171,33 +195,36 @@ public abstract class AbstractMdRecordToOafMapper {
|
|||
if (StringUtils.isNotBlank(originalId)) {
|
||||
final String projectId = createOpenaireId(40, originalId, true);
|
||||
|
||||
final Relation r1 = new Relation();
|
||||
r1.setRelType("resultProject");
|
||||
r1.setSubRelType("outcome");
|
||||
r1.setRelClass("isProducedBy");
|
||||
r1.setSource(docId);
|
||||
r1.setTarget(projectId);
|
||||
r1.setCollectedfrom(Arrays.asList(collectedFrom));
|
||||
r1.setDataInfo(info);
|
||||
r1.setLastupdatetimestamp(lastUpdateTimestamp);
|
||||
res.add(r1);
|
||||
|
||||
final Relation r2 = new Relation();
|
||||
r2.setRelType("resultProject");
|
||||
r2.setSubRelType("outcome");
|
||||
r2.setRelClass("produces");
|
||||
r2.setSource(projectId);
|
||||
r2.setTarget(docId);
|
||||
r2.setCollectedfrom(Arrays.asList(collectedFrom));
|
||||
r2.setDataInfo(info);
|
||||
r2.setLastupdatetimestamp(lastUpdateTimestamp);
|
||||
res.add(r2);
|
||||
res
|
||||
.add(
|
||||
getRelation(
|
||||
docId, projectId, RESULT_PROJECT, OUTCOME, IS_PRODUCED_BY, collectedFrom, info,
|
||||
lastUpdateTimestamp));
|
||||
res
|
||||
.add(
|
||||
getRelation(
|
||||
projectId, docId, RESULT_PROJECT, OUTCOME, PRODUCES, collectedFrom, info,
|
||||
lastUpdateTimestamp));
|
||||
}
|
||||
}
|
||||
|
||||
return res;
|
||||
}
|
||||
|
||||
protected Relation getRelation(String source, String target, String relType, String subRelType, String relClass,
|
||||
KeyValue collectedFrom, DataInfo info, long lastUpdateTimestamp) {
|
||||
final Relation rel = new Relation();
|
||||
rel.setRelType(relType);
|
||||
rel.setSubRelType(subRelType);
|
||||
rel.setRelClass(relClass);
|
||||
rel.setSource(source);
|
||||
rel.setTarget(target);
|
||||
rel.setCollectedfrom(Arrays.asList(collectedFrom));
|
||||
rel.setDataInfo(info);
|
||||
rel.setLastupdatetimestamp(lastUpdateTimestamp);
|
||||
return rel;
|
||||
}
|
||||
|
||||
protected abstract List<Oaf> addOtherResultRels(
|
||||
final Document doc,
|
||||
final KeyValue collectedFrom,
|
||||
|
|
@ -423,7 +450,7 @@ public abstract class AbstractMdRecordToOafMapper {
|
|||
|
||||
if (n == null) {
|
||||
return dataInfo(
|
||||
false, null, false, false, MigrationConstants.REPOSITORY_PROVENANCE_ACTIONS, "0.9");
|
||||
false, null, false, false, REPOSITORY_PROVENANCE_ACTIONS, "0.9");
|
||||
}
|
||||
|
||||
final String paClassId = n.valueOf("./oaf:provenanceaction/@classid");
|
||||
|
|
|
|||
|
|
@ -95,6 +95,7 @@ public class GenerateEntitiesApplication {
|
|||
.sequenceFile(sp, Text.class, Text.class)
|
||||
.map(k -> new Tuple2<>(k._1().toString(), k._2().toString()))
|
||||
.map(k -> convertToListOaf(k._1(), k._2(), code2name))
|
||||
.filter(Objects::nonNull)
|
||||
.flatMap(list -> list.iterator()));
|
||||
}
|
||||
|
||||
|
|
|
|||
|
|
@ -10,6 +10,7 @@ import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.listFields;
|
|||
import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.listKeyValues;
|
||||
import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.qualifier;
|
||||
import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.structuredProperty;
|
||||
import static eu.dnetlib.dhp.schema.common.ModelConstants.*;
|
||||
|
||||
import java.io.Closeable;
|
||||
import java.io.IOException;
|
||||
|
|
@ -31,7 +32,6 @@ import org.apache.commons.logging.LogFactory;
|
|||
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
|
||||
import eu.dnetlib.dhp.oa.graph.raw.common.AbstractMigrationApplication;
|
||||
import eu.dnetlib.dhp.oa.graph.raw.common.DbClient;
|
||||
import eu.dnetlib.dhp.oa.graph.raw.common.MigrationConstants;
|
||||
import eu.dnetlib.dhp.schema.oaf.Context;
|
||||
import eu.dnetlib.dhp.schema.oaf.DataInfo;
|
||||
import eu.dnetlib.dhp.schema.oaf.Dataset;
|
||||
|
|
@ -51,19 +51,23 @@ import eu.dnetlib.dhp.schema.oaf.Software;
|
|||
import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
|
||||
|
||||
public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
||||
implements Closeable {
|
||||
implements Closeable {
|
||||
|
||||
private static final Log log = LogFactory.getLog(MigrateDbEntitiesApplication.class);
|
||||
|
||||
public static final String SOURCE_TYPE = "source_type";
|
||||
public static final String TARGET_TYPE = "target_type";
|
||||
|
||||
private final DbClient dbClient;
|
||||
|
||||
private final long lastUpdateTimestamp;
|
||||
|
||||
public static void main(final String[] args) throws Exception {
|
||||
final ArgumentApplicationParser parser = new ArgumentApplicationParser(
|
||||
IOUtils
|
||||
.toString(MigrateDbEntitiesApplication.class
|
||||
.getResourceAsStream("/eu/dnetlib/dhp/oa/graph/migrate_db_entities_parameters.json")));
|
||||
IOUtils
|
||||
.toString(
|
||||
MigrateDbEntitiesApplication.class
|
||||
.getResourceAsStream("/eu/dnetlib/dhp/oa/graph/migrate_db_entities_parameters.json")));
|
||||
|
||||
parser.parseArgument(args);
|
||||
|
||||
|
|
@ -76,7 +80,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
final boolean processClaims = parser.get("action") != null && parser.get("action").equalsIgnoreCase("claims");
|
||||
|
||||
try (final MigrateDbEntitiesApplication smdbe = new MigrateDbEntitiesApplication(hdfsPath, dbUrl, dbUser,
|
||||
dbPassword)) {
|
||||
dbPassword)) {
|
||||
if (processClaims) {
|
||||
log.info("Processing claims...");
|
||||
smdbe.execute("queryClaims.sql", smdbe::processClaims);
|
||||
|
|
@ -107,15 +111,15 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
}
|
||||
|
||||
public MigrateDbEntitiesApplication(
|
||||
final String hdfsPath, final String dbUrl, final String dbUser, final String dbPassword)
|
||||
throws Exception {
|
||||
final String hdfsPath, final String dbUrl, final String dbUser, final String dbPassword)
|
||||
throws Exception {
|
||||
super(hdfsPath);
|
||||
this.dbClient = new DbClient(dbUrl, dbUser, dbPassword);
|
||||
this.lastUpdateTimestamp = new Date().getTime();
|
||||
}
|
||||
|
||||
public void execute(final String sqlFile, final Function<ResultSet, List<Oaf>> producer)
|
||||
throws Exception {
|
||||
throws Exception {
|
||||
final String sql = IOUtils.toString(getClass().getResourceAsStream("/eu/dnetlib/dhp/oa/graph/sql/" + sqlFile));
|
||||
|
||||
final Consumer<ResultSet> consumer = rs -> producer.apply(rs).forEach(oaf -> emitOaf(oaf));
|
||||
|
|
@ -134,7 +138,10 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
ds.setId(createOpenaireId(10, rs.getString("datasourceid"), true));
|
||||
ds.setOriginalId(Arrays.asList(rs.getString("datasourceid")));
|
||||
ds
|
||||
.setCollectedfrom(listKeyValues(createOpenaireId(10, rs.getString("collectedfromid"), true), rs.getString("collectedfromname")));
|
||||
.setCollectedfrom(
|
||||
listKeyValues(
|
||||
createOpenaireId(10, rs.getString("collectedfromid"), true),
|
||||
rs.getString("collectedfromname")));
|
||||
ds.setPid(new ArrayList<>());
|
||||
ds.setDateofcollection(asString(rs.getDate("dateofcollection")));
|
||||
ds.setDateoftransformation(null); // Value not returned by the SQL query
|
||||
|
|
@ -175,7 +182,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
ds.setCertificates(field(rs.getString("certificates"), info));
|
||||
ds.setPolicies(new ArrayList<>()); // The sql query returns an empty array
|
||||
ds
|
||||
.setJournal(prepareJournal(rs.getString("officialname"), rs.getString("journal"), info)); // Journal
|
||||
.setJournal(prepareJournal(rs.getString("officialname"), rs.getString("journal"), info)); // Journal
|
||||
ds.setDataInfo(info);
|
||||
ds.setLastupdatetimestamp(lastUpdateTimestamp);
|
||||
|
||||
|
|
@ -195,7 +202,10 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
p.setId(createOpenaireId(40, rs.getString("projectid"), true));
|
||||
p.setOriginalId(Arrays.asList(rs.getString("projectid")));
|
||||
p
|
||||
.setCollectedfrom(listKeyValues(createOpenaireId(10, rs.getString("collectedfromid"), true), rs.getString("collectedfromname")));
|
||||
.setCollectedfrom(
|
||||
listKeyValues(
|
||||
createOpenaireId(10, rs.getString("collectedfromid"), true),
|
||||
rs.getString("collectedfromname")));
|
||||
p.setPid(new ArrayList<>());
|
||||
p.setDateofcollection(asString(rs.getDate("dateofcollection")));
|
||||
p.setDateoftransformation(asString(rs.getDate("dateoftransformation")));
|
||||
|
|
@ -212,7 +222,7 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
p.setDuration(field(Integer.toString(rs.getInt("duration")), info));
|
||||
p.setEcsc39(field(Boolean.toString(rs.getBoolean("ecsc39")), info));
|
||||
p
|
||||
.setOamandatepublications(field(Boolean.toString(rs.getBoolean("oamandatepublications")), info));
|
||||
.setOamandatepublications(field(Boolean.toString(rs.getBoolean("oamandatepublications")), info));
|
||||
p.setEcarticle29_3(field(Boolean.toString(rs.getBoolean("ecarticle29_3")), info));
|
||||
p.setSubjects(prepareListOfStructProps(rs.getArray("subjects"), info));
|
||||
p.setFundingtree(prepareListFields(rs.getArray("fundingtree"), info));
|
||||
|
|
@ -249,7 +259,10 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
o.setId(createOpenaireId(20, rs.getString("organizationid"), true));
|
||||
o.setOriginalId(Arrays.asList(rs.getString("organizationid")));
|
||||
o
|
||||
.setCollectedfrom(listKeyValues(createOpenaireId(10, rs.getString("collectedfromid"), true), rs.getString("collectedfromname")));
|
||||
.setCollectedfrom(
|
||||
listKeyValues(
|
||||
createOpenaireId(10, rs.getString("collectedfromid"), true),
|
||||
rs.getString("collectedfromname")));
|
||||
o.setPid(new ArrayList<>());
|
||||
o.setDateofcollection(asString(rs.getDate("dateofcollection")));
|
||||
o.setDateoftransformation(asString(rs.getDate("dateoftransformation")));
|
||||
|
|
@ -264,12 +277,14 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
o.setEclegalperson(field(Boolean.toString(rs.getBoolean("eclegalperson")), info));
|
||||
o.setEcnonprofit(field(Boolean.toString(rs.getBoolean("ecnonprofit")), info));
|
||||
o
|
||||
.setEcresearchorganization(field(Boolean.toString(rs.getBoolean("ecresearchorganization")), info));
|
||||
.setEcresearchorganization(field(Boolean.toString(rs.getBoolean("ecresearchorganization")), info));
|
||||
o.setEchighereducation(field(Boolean.toString(rs.getBoolean("echighereducation")), info));
|
||||
o
|
||||
.setEcinternationalorganizationeurinterests(field(Boolean.toString(rs.getBoolean("ecinternationalorganizationeurinterests")), info));
|
||||
.setEcinternationalorganizationeurinterests(
|
||||
field(Boolean.toString(rs.getBoolean("ecinternationalorganizationeurinterests")), info));
|
||||
o
|
||||
.setEcinternationalorganization(field(Boolean.toString(rs.getBoolean("ecinternationalorganization")), info));
|
||||
.setEcinternationalorganization(
|
||||
field(Boolean.toString(rs.getBoolean("ecinternationalorganization")), info));
|
||||
o.setEcenterprise(field(Boolean.toString(rs.getBoolean("ecenterprise")), info));
|
||||
o.setEcsmevalidated(field(Boolean.toString(rs.getBoolean("ecsmevalidated")), info));
|
||||
o.setEcnutscode(field(Boolean.toString(rs.getBoolean("ecnutscode")), info));
|
||||
|
|
@ -288,12 +303,13 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
final DataInfo info = prepareDataInfo(rs);
|
||||
final String orgId = createOpenaireId(20, rs.getString("organization"), true);
|
||||
final String dsId = createOpenaireId(10, rs.getString("datasource"), true);
|
||||
final List<KeyValue> collectedFrom = listKeyValues(createOpenaireId(10, rs.getString("collectedfromid"), true), rs.getString("collectedfromname"));
|
||||
final List<KeyValue> collectedFrom = listKeyValues(
|
||||
createOpenaireId(10, rs.getString("collectedfromid"), true), rs.getString("collectedfromname"));
|
||||
|
||||
final Relation r1 = new Relation();
|
||||
r1.setRelType("datasourceOrganization");
|
||||
r1.setSubRelType("provision");
|
||||
r1.setRelClass("isProvidedBy");
|
||||
r1.setRelType(DATASOURCE_ORGANIZATION);
|
||||
r1.setSubRelType(PROVISION);
|
||||
r1.setRelClass(IS_PROVIDED_BY);
|
||||
r1.setSource(dsId);
|
||||
r1.setTarget(orgId);
|
||||
r1.setCollectedfrom(collectedFrom);
|
||||
|
|
@ -301,9 +317,9 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
r1.setLastupdatetimestamp(lastUpdateTimestamp);
|
||||
|
||||
final Relation r2 = new Relation();
|
||||
r2.setRelType("datasourceOrganization");
|
||||
r2.setSubRelType("provision");
|
||||
r2.setRelClass("provides");
|
||||
r2.setRelType(DATASOURCE_ORGANIZATION);
|
||||
r2.setSubRelType(PROVISION);
|
||||
r2.setRelClass(PROVIDES);
|
||||
r2.setSource(orgId);
|
||||
r2.setTarget(dsId);
|
||||
r2.setCollectedfrom(collectedFrom);
|
||||
|
|
@ -321,12 +337,13 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
final DataInfo info = prepareDataInfo(rs);
|
||||
final String orgId = createOpenaireId(20, rs.getString("resporganization"), true);
|
||||
final String projectId = createOpenaireId(40, rs.getString("project"), true);
|
||||
final List<KeyValue> collectedFrom = listKeyValues(createOpenaireId(10, rs.getString("collectedfromid"), true), rs.getString("collectedfromname"));
|
||||
final List<KeyValue> collectedFrom = listKeyValues(
|
||||
createOpenaireId(10, rs.getString("collectedfromid"), true), rs.getString("collectedfromname"));
|
||||
|
||||
final Relation r1 = new Relation();
|
||||
r1.setRelType("projectOrganization");
|
||||
r1.setSubRelType("participation");
|
||||
r1.setRelClass("hasParticipant");
|
||||
r1.setRelType(PROJECT_ORGANIZATION);
|
||||
r1.setSubRelType(PARTICIPATION);
|
||||
r1.setRelClass(HAS_PARTICIPANT);
|
||||
r1.setSource(projectId);
|
||||
r1.setTarget(orgId);
|
||||
r1.setCollectedfrom(collectedFrom);
|
||||
|
|
@ -334,9 +351,9 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
r1.setLastupdatetimestamp(lastUpdateTimestamp);
|
||||
|
||||
final Relation r2 = new Relation();
|
||||
r2.setRelType("projectOrganization");
|
||||
r2.setSubRelType("participation");
|
||||
r2.setRelClass("isParticipant");
|
||||
r2.setRelType(PROJECT_ORGANIZATION);
|
||||
r2.setSubRelType(PARTICIPATION);
|
||||
r2.setRelClass(IS_PARTICIPANT);
|
||||
r2.setSource(orgId);
|
||||
r2.setTarget(projectId);
|
||||
r2.setCollectedfrom(collectedFrom);
|
||||
|
|
@ -351,28 +368,30 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
|
||||
public List<Oaf> processClaims(final ResultSet rs) {
|
||||
|
||||
final DataInfo info =
|
||||
dataInfo(false, null, false, false, qualifier("user:claim", "user:claim", "dnet:provenanceActions", "dnet:provenanceActions"), "0.9");
|
||||
final DataInfo info = dataInfo(
|
||||
false, null, false, false,
|
||||
qualifier(USER_CLAIM, USER_CLAIM, DNET_PROVENANCE_ACTIONS, DNET_PROVENANCE_ACTIONS), "0.9");
|
||||
|
||||
final List<KeyValue> collectedFrom = listKeyValues(createOpenaireId(10, "infrastruct_::openaire", true), "OpenAIRE");
|
||||
final List<KeyValue> collectedFrom = listKeyValues(
|
||||
createOpenaireId(10, "infrastruct_::openaire", true), "OpenAIRE");
|
||||
|
||||
try {
|
||||
|
||||
if (rs.getString("source_type").equals("context")) {
|
||||
if (rs.getString(SOURCE_TYPE).equals("context")) {
|
||||
final Result r;
|
||||
|
||||
if (rs.getString("target_type").equals("dataset")) {
|
||||
if (rs.getString(TARGET_TYPE).equals("dataset")) {
|
||||
r = new Dataset();
|
||||
r.setResulttype(MigrationConstants.DATASET_RESULTTYPE_QUALIFIER);
|
||||
} else if (rs.getString("target_type").equals("software")) {
|
||||
r.setResulttype(DATASET_DEFAULT_RESULTTYPE);
|
||||
} else if (rs.getString(TARGET_TYPE).equals("software")) {
|
||||
r = new Software();
|
||||
r.setResulttype(MigrationConstants.SOFTWARE_RESULTTYPE_QUALIFIER);
|
||||
} else if (rs.getString("target_type").equals("other")) {
|
||||
r.setResulttype(SOFTWARE_DEFAULT_RESULTTYPE);
|
||||
} else if (rs.getString(TARGET_TYPE).equals("other")) {
|
||||
r = new OtherResearchProduct();
|
||||
r.setResulttype(MigrationConstants.OTHER_RESULTTYPE_QUALIFIER);
|
||||
r.setResulttype(ORP_DEFAULT_RESULTTYPE);
|
||||
} else {
|
||||
r = new Publication();
|
||||
r.setResulttype(MigrationConstants.PUBLICATION_RESULTTYPE_QUALIFIER);
|
||||
r.setResulttype(PUBLICATION_DEFAULT_RESULTTYPE);
|
||||
}
|
||||
r.setId(createOpenaireId(50, rs.getString("target_id"), false));
|
||||
r.setLastupdatetimestamp(lastUpdateTimestamp);
|
||||
|
|
@ -382,32 +401,32 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
|
||||
return Arrays.asList(r);
|
||||
} else {
|
||||
final String sourceId = createOpenaireId(rs.getString("source_type"), rs.getString("source_id"), false);
|
||||
final String targetId = createOpenaireId(rs.getString("target_type"), rs.getString("target_id"), false);
|
||||
final String sourceId = createOpenaireId(rs.getString(SOURCE_TYPE), rs.getString("source_id"), false);
|
||||
final String targetId = createOpenaireId(rs.getString(TARGET_TYPE), rs.getString("target_id"), false);
|
||||
|
||||
final Relation r1 = new Relation();
|
||||
final Relation r2 = new Relation();
|
||||
|
||||
if (rs.getString("source_type").equals("project")) {
|
||||
if (rs.getString(SOURCE_TYPE).equals("project")) {
|
||||
r1.setCollectedfrom(collectedFrom);
|
||||
r1.setRelType("resultProject");
|
||||
r1.setSubRelType("outcome");
|
||||
r1.setRelClass("produces");
|
||||
r1.setRelType(RESULT_PROJECT);
|
||||
r1.setSubRelType(OUTCOME);
|
||||
r1.setRelClass(PRODUCES);
|
||||
|
||||
r2.setCollectedfrom(collectedFrom);
|
||||
r2.setRelType("resultProject");
|
||||
r2.setSubRelType("outcome");
|
||||
r2.setRelClass("isProducedBy");
|
||||
r2.setRelType(RESULT_PROJECT);
|
||||
r2.setSubRelType(OUTCOME);
|
||||
r2.setRelClass(IS_PRODUCED_BY);
|
||||
} else {
|
||||
r1.setCollectedfrom(collectedFrom);
|
||||
r1.setRelType("resultResult");
|
||||
r1.setSubRelType("relationship");
|
||||
r1.setRelClass("isRelatedTo");
|
||||
r1.setRelType(RESULT_RESULT);
|
||||
r1.setSubRelType(RELATIONSHIP);
|
||||
r1.setRelClass(IS_RELATED_TO);
|
||||
|
||||
r2.setCollectedfrom(collectedFrom);
|
||||
r2.setRelType("resultResult");
|
||||
r2.setSubRelType("relationship");
|
||||
r2.setRelClass("isRelatedTo");
|
||||
r2.setRelType(RESULT_RESULT);
|
||||
r2.setSubRelType(RELATIONSHIP);
|
||||
r2.setRelClass(IS_RELATED_TO);
|
||||
}
|
||||
|
||||
r1.setSource(sourceId);
|
||||
|
|
@ -440,11 +459,14 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
final String inferenceprovenance = rs.getString("inferenceprovenance");
|
||||
final Boolean inferred = rs.getBoolean("inferred");
|
||||
final String trust = rs.getString("trust");
|
||||
return dataInfo(deletedbyinference, inferenceprovenance, inferred, false, MigrationConstants.ENTITYREGISTRY_PROVENANCE_ACTION, trust);
|
||||
return dataInfo(
|
||||
deletedbyinference, inferenceprovenance, inferred, false, ENTITYREGISTRY_PROVENANCE_ACTION, trust);
|
||||
}
|
||||
|
||||
private Qualifier prepareQualifierSplitting(final String s) {
|
||||
if (StringUtils.isBlank(s)) { return null; }
|
||||
if (StringUtils.isBlank(s)) {
|
||||
return null;
|
||||
}
|
||||
final String[] arr = s.split("@@@");
|
||||
return arr.length == 4 ? qualifier(arr[0], arr[1], arr[2], arr[3]) : null;
|
||||
}
|
||||
|
|
@ -458,19 +480,23 @@ public class MigrateDbEntitiesApplication extends AbstractMigrationApplication
|
|||
}
|
||||
|
||||
private StructuredProperty prepareStructProp(final String s, final DataInfo dataInfo) {
|
||||
if (StringUtils.isBlank(s)) { return null; }
|
||||
if (StringUtils.isBlank(s)) {
|
||||
return null;
|
||||
}
|
||||
final String[] parts = s.split("###");
|
||||
if (parts.length == 2) {
|
||||
final String value = parts[0];
|
||||
final String[] arr = parts[1].split("@@@");
|
||||
if (arr.length == 4) { return structuredProperty(value, arr[0], arr[1], arr[2], arr[3], dataInfo); }
|
||||
if (arr.length == 4) {
|
||||
return structuredProperty(value, arr[0], arr[1], arr[2], arr[3], dataInfo);
|
||||
}
|
||||
}
|
||||
return null;
|
||||
}
|
||||
|
||||
private List<StructuredProperty> prepareListOfStructProps(
|
||||
final Array array,
|
||||
final DataInfo dataInfo) throws SQLException {
|
||||
final Array array,
|
||||
final DataInfo dataInfo) throws SQLException {
|
||||
final List<StructuredProperty> res = new ArrayList<>();
|
||||
if (array != null) {
|
||||
for (final String s : (String[]) array.getArray()) {
|
||||
|
|
|
|||
|
|
@ -3,6 +3,7 @@ package eu.dnetlib.dhp.oa.graph.raw;
|
|||
|
||||
import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.createOpenaireId;
|
||||
import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.field;
|
||||
import static eu.dnetlib.dhp.schema.common.ModelConstants.*;
|
||||
|
||||
import java.util.ArrayList;
|
||||
import java.util.Arrays;
|
||||
|
|
@ -13,17 +14,10 @@ import org.apache.commons.lang3.StringUtils;
|
|||
import org.dom4j.Document;
|
||||
import org.dom4j.Node;
|
||||
|
||||
import com.google.common.collect.Lists;
|
||||
|
||||
import eu.dnetlib.dhp.oa.graph.raw.common.PacePerson;
|
||||
import eu.dnetlib.dhp.schema.oaf.Author;
|
||||
import eu.dnetlib.dhp.schema.oaf.DataInfo;
|
||||
import eu.dnetlib.dhp.schema.oaf.Field;
|
||||
import eu.dnetlib.dhp.schema.oaf.GeoLocation;
|
||||
import eu.dnetlib.dhp.schema.oaf.Instance;
|
||||
import eu.dnetlib.dhp.schema.oaf.KeyValue;
|
||||
import eu.dnetlib.dhp.schema.oaf.Oaf;
|
||||
import eu.dnetlib.dhp.schema.oaf.Qualifier;
|
||||
import eu.dnetlib.dhp.schema.oaf.Relation;
|
||||
import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
|
||||
import eu.dnetlib.dhp.schema.oaf.*;
|
||||
|
||||
public class OafToOafMapper extends AbstractMdRecordToOafMapper {
|
||||
|
||||
|
|
@ -52,7 +46,7 @@ public class OafToOafMapper extends AbstractMdRecordToOafMapper {
|
|||
|
||||
@Override
|
||||
protected Qualifier prepareLanguages(final Document doc) {
|
||||
return prepareQualifier(doc, "//dc:language", "dnet:languages", "dnet:languages");
|
||||
return prepareQualifier(doc, "//dc:language", DNET_LANGUAGES, DNET_LANGUAGES);
|
||||
}
|
||||
|
||||
@Override
|
||||
|
|
@ -96,38 +90,38 @@ public class OafToOafMapper extends AbstractMdRecordToOafMapper {
|
|||
final DataInfo info,
|
||||
final KeyValue collectedfrom,
|
||||
final KeyValue hostedby) {
|
||||
final List<Instance> res = new ArrayList<>();
|
||||
|
||||
final Instance instance = new Instance();
|
||||
instance
|
||||
.setInstancetype(
|
||||
prepareQualifier(
|
||||
doc,
|
||||
"//dr:CobjCategory",
|
||||
DNET_PUBLICATION_RESOURCE,
|
||||
DNET_PUBLICATION_RESOURCE));
|
||||
instance.setCollectedfrom(collectedfrom);
|
||||
instance.setHostedby(hostedby);
|
||||
instance.setDateofacceptance(field(doc.valueOf("//oaf:dateAccepted"), info));
|
||||
instance.setDistributionlocation(doc.valueOf("//oaf:distributionlocation"));
|
||||
instance
|
||||
.setAccessright(
|
||||
prepareQualifier(doc, "//oaf:accessrights", DNET_ACCESS_MODES, DNET_ACCESS_MODES));
|
||||
instance.setLicense(field(doc.valueOf("//oaf:license"), info));
|
||||
instance.setRefereed(field(doc.valueOf("//oaf:refereed"), info));
|
||||
instance
|
||||
.setProcessingchargeamount(
|
||||
field(doc.valueOf("//oaf:processingchargeamount"), info));
|
||||
instance
|
||||
.setProcessingchargecurrency(
|
||||
field(doc.valueOf("//oaf:processingchargeamount/@currency"), info));
|
||||
|
||||
for (final Object o : doc.selectNodes("//dc:identifier")) {
|
||||
final String url = ((Node) o).getText().trim();
|
||||
if (url.startsWith("http")) {
|
||||
final Instance instance = new Instance();
|
||||
instance.setUrl(Arrays.asList(url));
|
||||
instance
|
||||
.setInstancetype(
|
||||
prepareQualifier(
|
||||
doc,
|
||||
"//dr:CobjCategory",
|
||||
"dnet:publication_resource",
|
||||
"dnet:publication_resource"));
|
||||
instance.setCollectedfrom(collectedfrom);
|
||||
instance.setHostedby(hostedby);
|
||||
instance.setDateofacceptance(field(doc.valueOf("//oaf:dateAccepted"), info));
|
||||
instance.setDistributionlocation(doc.valueOf("//oaf:distributionlocation"));
|
||||
instance
|
||||
.setAccessright(
|
||||
prepareQualifier(doc, "//oaf:accessrights", "dnet:access_modes", "dnet:access_modes"));
|
||||
instance.setLicense(field(doc.valueOf("//oaf:license"), info));
|
||||
instance.setRefereed(field(doc.valueOf("//oaf:refereed"), info));
|
||||
instance
|
||||
.setProcessingchargeamount(
|
||||
field(doc.valueOf("//oaf:processingchargeamount"), info));
|
||||
instance
|
||||
.setProcessingchargecurrency(
|
||||
field(doc.valueOf("//oaf:processingchargeamount/@currency"), info));
|
||||
res.add(instance);
|
||||
}
|
||||
}
|
||||
return res;
|
||||
return Lists.newArrayList(instance);
|
||||
}
|
||||
|
||||
@Override
|
||||
|
|
@ -241,27 +235,16 @@ public class OafToOafMapper extends AbstractMdRecordToOafMapper {
|
|||
|
||||
final String otherId = createOpenaireId(50, originalId, false);
|
||||
|
||||
final Relation r1 = new Relation();
|
||||
r1.setRelType("resultResult");
|
||||
r1.setSubRelType("publicationDataset");
|
||||
r1.setRelClass("isRelatedTo");
|
||||
r1.setSource(docId);
|
||||
r1.setTarget(otherId);
|
||||
r1.setCollectedfrom(Arrays.asList(collectedFrom));
|
||||
r1.setDataInfo(info);
|
||||
r1.setLastupdatetimestamp(lastUpdateTimestamp);
|
||||
res.add(r1);
|
||||
|
||||
final Relation r2 = new Relation();
|
||||
r2.setRelType("resultResult");
|
||||
r2.setSubRelType("publicationDataset");
|
||||
r2.setRelClass("isRelatedTo");
|
||||
r2.setSource(otherId);
|
||||
r2.setTarget(docId);
|
||||
r2.setCollectedfrom(Arrays.asList(collectedFrom));
|
||||
r2.setDataInfo(info);
|
||||
r2.setLastupdatetimestamp(lastUpdateTimestamp);
|
||||
res.add(r2);
|
||||
res
|
||||
.add(
|
||||
getRelation(
|
||||
docId, otherId, RESULT_RESULT, PUBLICATION_DATASET, IS_RELATED_TO, collectedFrom, info,
|
||||
lastUpdateTimestamp));
|
||||
res
|
||||
.add(
|
||||
getRelation(
|
||||
otherId, docId, RESULT_RESULT, PUBLICATION_DATASET, IS_RELATED_TO, collectedFrom, info,
|
||||
lastUpdateTimestamp));
|
||||
}
|
||||
}
|
||||
return res;
|
||||
|
|
|
|||
|
|
@ -4,6 +4,7 @@ package eu.dnetlib.dhp.oa.graph.raw;
|
|||
import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.createOpenaireId;
|
||||
import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.field;
|
||||
import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.structuredProperty;
|
||||
import static eu.dnetlib.dhp.schema.common.ModelConstants.*;
|
||||
|
||||
import java.util.ArrayList;
|
||||
import java.util.Arrays;
|
||||
|
|
@ -14,6 +15,7 @@ import org.apache.commons.lang3.StringUtils;
|
|||
import org.dom4j.Document;
|
||||
import org.dom4j.Node;
|
||||
|
||||
import eu.dnetlib.dhp.schema.common.ModelConstants;
|
||||
import eu.dnetlib.dhp.schema.oaf.Author;
|
||||
import eu.dnetlib.dhp.schema.oaf.DataInfo;
|
||||
import eu.dnetlib.dhp.schema.oaf.Field;
|
||||
|
|
@ -27,6 +29,8 @@ import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
|
|||
|
||||
public class OdfToOafMapper extends AbstractMdRecordToOafMapper {
|
||||
|
||||
public static final String HTTP_DX_DOI_PREIFX = "http://dx.doi.org/";
|
||||
|
||||
public OdfToOafMapper(final Map<String, String> code2name) {
|
||||
super(code2name);
|
||||
}
|
||||
|
|
@ -62,7 +66,7 @@ public class OdfToOafMapper extends AbstractMdRecordToOafMapper {
|
|||
structuredProperty(
|
||||
((Node) o).getText(),
|
||||
prepareQualifier(
|
||||
(Node) o, "./@nameIdentifierScheme", "dnet:pid_types", "dnet:pid_types"),
|
||||
(Node) o, "./@nameIdentifierScheme", DNET_PID_TYPES, DNET_PID_TYPES),
|
||||
info));
|
||||
}
|
||||
return res;
|
||||
|
|
@ -80,14 +84,14 @@ public class OdfToOafMapper extends AbstractMdRecordToOafMapper {
|
|||
instance
|
||||
.setInstancetype(
|
||||
prepareQualifier(
|
||||
doc, "//dr:CobjCategory", "dnet:publication_resource", "dnet:publication_resource"));
|
||||
doc, "//dr:CobjCategory", DNET_PUBLICATION_RESOURCE, DNET_PUBLICATION_RESOURCE));
|
||||
instance.setCollectedfrom(collectedfrom);
|
||||
instance.setHostedby(hostedby);
|
||||
instance.setDateofacceptance(field(doc.valueOf("//oaf:dateAccepted"), info));
|
||||
instance.setDistributionlocation(doc.valueOf("//oaf:distributionlocation"));
|
||||
instance
|
||||
.setAccessright(
|
||||
prepareQualifier(doc, "//oaf:accessrights", "dnet:access_modes", "dnet:access_modes"));
|
||||
prepareQualifier(doc, "//oaf:accessrights", DNET_ACCESS_MODES, DNET_ACCESS_MODES));
|
||||
instance.setLicense(field(doc.valueOf("//oaf:license"), info));
|
||||
instance.setRefereed(field(doc.valueOf("//oaf:refereed"), info));
|
||||
instance.setProcessingchargeamount(field(doc.valueOf("//oaf:processingchargeamount"), info));
|
||||
|
|
@ -102,10 +106,10 @@ public class OdfToOafMapper extends AbstractMdRecordToOafMapper {
|
|||
instance.getUrl().add(((Node) o).getText().trim());
|
||||
}
|
||||
for (final Object o : doc.selectNodes("//datacite:alternateIdentifier[@alternateIdentifierType='DOI']")) {
|
||||
instance.getUrl().add("http://dx.doi.org/" + ((Node) o).getText().trim());
|
||||
instance.getUrl().add(HTTP_DX_DOI_PREIFX + ((Node) o).getText().trim());
|
||||
}
|
||||
for (final Object o : doc.selectNodes("//datacite:identifier[@identifierType='DOI']")) {
|
||||
instance.getUrl().add("http://dx.doi.org/" + ((Node) o).getText().trim());
|
||||
instance.getUrl().add(HTTP_DX_DOI_PREIFX + ((Node) o).getText().trim());
|
||||
}
|
||||
return Arrays.asList(instance);
|
||||
}
|
||||
|
|
@ -131,8 +135,8 @@ public class OdfToOafMapper extends AbstractMdRecordToOafMapper {
|
|||
((Node) o).getText(),
|
||||
"UNKNOWN",
|
||||
"UNKNOWN",
|
||||
"dnet:dataCite_date",
|
||||
"dnet:dataCite_date",
|
||||
DNET_DATA_CITE_DATE,
|
||||
DNET_DATA_CITE_DATE,
|
||||
info));
|
||||
}
|
||||
}
|
||||
|
|
@ -171,7 +175,7 @@ public class OdfToOafMapper extends AbstractMdRecordToOafMapper {
|
|||
|
||||
@Override
|
||||
protected Qualifier prepareLanguages(final Document doc) {
|
||||
return prepareQualifier(doc, "//datacite:language", "dnet:languages", "dnet:languages");
|
||||
return prepareQualifier(doc, "//datacite:language", DNET_LANGUAGES, DNET_LANGUAGES);
|
||||
}
|
||||
|
||||
@Override
|
||||
|
|
@ -292,36 +296,29 @@ public class OdfToOafMapper extends AbstractMdRecordToOafMapper {
|
|||
final String otherId = createOpenaireId(50, originalId, false);
|
||||
final String type = ((Node) o).valueOf("@relationType");
|
||||
|
||||
if (type.equals("IsSupplementTo")) {
|
||||
if (type.equalsIgnoreCase("IsSupplementTo")) {
|
||||
res
|
||||
.add(
|
||||
prepareOtherResultRel(
|
||||
collectedFrom,
|
||||
info,
|
||||
lastUpdateTimestamp,
|
||||
docId,
|
||||
otherId,
|
||||
"supplement",
|
||||
"isSupplementTo"));
|
||||
getRelation(
|
||||
docId, otherId, RESULT_RESULT, SUPPLEMENT, IS_SUPPLEMENT_TO, collectedFrom, info,
|
||||
lastUpdateTimestamp));
|
||||
res
|
||||
.add(
|
||||
prepareOtherResultRel(
|
||||
collectedFrom,
|
||||
info,
|
||||
lastUpdateTimestamp,
|
||||
otherId,
|
||||
docId,
|
||||
"supplement",
|
||||
"isSupplementedBy"));
|
||||
getRelation(
|
||||
otherId, docId, RESULT_RESULT, SUPPLEMENT, IS_SUPPLEMENTED_BY, collectedFrom, info,
|
||||
lastUpdateTimestamp));
|
||||
} else if (type.equals("IsPartOf")) {
|
||||
|
||||
res
|
||||
.add(
|
||||
prepareOtherResultRel(
|
||||
collectedFrom, info, lastUpdateTimestamp, docId, otherId, "part", "IsPartOf"));
|
||||
getRelation(
|
||||
docId, otherId, RESULT_RESULT, PART, IS_PART_OF, collectedFrom, info,
|
||||
lastUpdateTimestamp));
|
||||
res
|
||||
.add(
|
||||
prepareOtherResultRel(
|
||||
collectedFrom, info, lastUpdateTimestamp, otherId, docId, "part", "HasParts"));
|
||||
getRelation(
|
||||
otherId, docId, RESULT_RESULT, PART, HAS_PARTS, collectedFrom, info,
|
||||
lastUpdateTimestamp));
|
||||
} else {
|
||||
}
|
||||
}
|
||||
|
|
@ -329,32 +326,12 @@ public class OdfToOafMapper extends AbstractMdRecordToOafMapper {
|
|||
return res;
|
||||
}
|
||||
|
||||
private Relation prepareOtherResultRel(
|
||||
final KeyValue collectedFrom,
|
||||
final DataInfo info,
|
||||
final long lastUpdateTimestamp,
|
||||
final String source,
|
||||
final String target,
|
||||
final String subRelType,
|
||||
final String relClass) {
|
||||
final Relation r = new Relation();
|
||||
r.setRelType("resultResult");
|
||||
r.setSubRelType(subRelType);
|
||||
r.setRelClass(relClass);
|
||||
r.setSource(source);
|
||||
r.setTarget(target);
|
||||
r.setCollectedfrom(Arrays.asList(collectedFrom));
|
||||
r.setDataInfo(info);
|
||||
r.setLastupdatetimestamp(lastUpdateTimestamp);
|
||||
return r;
|
||||
}
|
||||
|
||||
@Override
|
||||
protected Qualifier prepareResourceType(final Document doc, final DataInfo info) {
|
||||
return prepareQualifier(
|
||||
doc,
|
||||
"//*[local-name() = 'resource']//*[local-name() = 'resourceType']",
|
||||
"dnet:dataCite_resource",
|
||||
"dnet:dataCite_resource");
|
||||
DNET_DATA_CITE_RESOURCE,
|
||||
DNET_DATA_CITE_RESOURCE);
|
||||
}
|
||||
}
|
||||
|
|
|
|||
|
|
@ -1,27 +0,0 @@
|
|||
|
||||
package eu.dnetlib.dhp.oa.graph.raw.common;
|
||||
|
||||
import static eu.dnetlib.dhp.oa.graph.raw.common.OafMapperUtils.qualifier;
|
||||
|
||||
import eu.dnetlib.dhp.schema.oaf.Qualifier;
|
||||
|
||||
public class MigrationConstants {
|
||||
|
||||
public static final Qualifier PUBLICATION_RESULTTYPE_QUALIFIER = qualifier(
|
||||
"publication", "publication", "dnet:result_typologies", "dnet:result_typologies");
|
||||
public static final Qualifier DATASET_RESULTTYPE_QUALIFIER = qualifier(
|
||||
"dataset", "dataset",
|
||||
"dnet:result_typologies", "dnet:result_typologies");
|
||||
public static final Qualifier SOFTWARE_RESULTTYPE_QUALIFIER = qualifier(
|
||||
"software", "software",
|
||||
"dnet:result_typologies", "dnet:result_typologies");
|
||||
public static final Qualifier OTHER_RESULTTYPE_QUALIFIER = qualifier(
|
||||
"other", "other",
|
||||
"dnet:result_typologies", "dnet:result_typologies");
|
||||
public static final Qualifier REPOSITORY_PROVENANCE_ACTIONS = qualifier(
|
||||
"sysimport:crosswalk:repository", "sysimport:crosswalk:repository",
|
||||
"dnet:provenanceActions", "dnet:provenanceActions");
|
||||
public static final Qualifier ENTITYREGISTRY_PROVENANCE_ACTION = qualifier(
|
||||
"sysimport:crosswalk:entityregistry", "sysimport:crosswalk:entityregistry",
|
||||
"dnet:provenanceActions", "dnet:provenanceActions");
|
||||
}
|
||||
Loading…
Reference in New Issue