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313 Commits

Author SHA1 Message Date
Claudio Atzori 663b1556d7 manually integrating PR#140 D-Net/dnet-hadoop#140 2021-09-15 16:40:25 +02:00
Claudio Atzori baed5e3337 test classes moved in specific components 2021-08-13 12:14:47 +02:00
Claudio Atzori 3359f73fcf cleanup & best practices 2021-08-13 12:00:42 +02:00
Miriam Baglioni 58f241f4a2 GetCSV refactoring - changed due to change of input resource 2021-08-13 10:04:44 +02:00
Miriam Baglioni f3d575f749 GetCSV refactoring - changed due to changes in input resource 2021-08-13 10:03:57 +02:00
Miriam Baglioni a5f6edfa6c GetCSV refactoring - changed to mirror the original model class 2021-08-13 09:30:03 +02:00
Miriam Baglioni 7402daf51a GetCSV refactoring - added dependency to open-csv lib 2021-08-12 17:59:19 +02:00
Miriam Baglioni 733bcaecf6 GetCSV refactoring - added test class (all the tests are disabled since they refer to remote resource) 2021-08-12 17:58:52 +02:00
Miriam Baglioni bfe8f5335c GetCSV refactoring - copied model classes in test path 2021-08-12 17:58:14 +02:00
Miriam Baglioni 6e84b3951f GetCSV refactoring - moving classes to dhp-common that have dependency with GetCSV class (that was located in graph-mapper) 2021-08-12 17:57:41 +02:00
Miriam Baglioni 9650eea497 reverting 2021-08-11 17:45:48 +02:00
Miriam Baglioni cc3d72df0e removing not needed dependency 2021-08-11 17:42:01 +02:00
Miriam Baglioni f9b6b45d85 reverting 2021-08-11 17:04:48 +02:00
Miriam Baglioni 8da3a25cf6 merging with branch beta 2021-08-11 15:55:34 +02:00
Claudio Atzori 2ee21da43b suggestions from SonarLint 2021-08-11 12:13:22 +02:00
Miriam Baglioni 6bd1eca7e0 merge branch with beta 2021-08-05 15:23:32 +02:00
Miriam Baglioni ee13da9258 merge branch with master 2021-08-05 11:34:20 +02:00
Miriam Baglioni 1d6ac3715b merge branch with beta 2021-07-30 11:58:29 +02:00
Claudio Atzori a9961a1835 [cleaning] title cleaning based on the me.xuender:unidecode library 2021-07-28 16:36:33 +02:00
Claudio Atzori 6dddad86ee [cleaning] title cleaning based on the me.xuender:unidecode library 2021-07-28 16:21:29 +02:00
Miriam Baglioni 74f801b689 mergin with branch beta 2021-07-27 13:18:31 +02:00
Miriam Baglioni 35e395eae8 merge with master 2021-07-27 12:34:59 +02:00
Miriam Baglioni eb07f7f40f Hosted By Map 2021-07-27 12:27:26 +02:00
Claudio Atzori bc835d2024 [cleaning] fixed filtering function for missing titles 2021-07-23 11:56:13 +02:00
Claudio Atzori ffdb2a3ea3 [cleaning] fixed filtering function for missing titles 2021-07-23 11:55:55 +02:00
Sandro La Bruzzo 62ae36a3d2 fixed NPE 2021-07-22 15:41:38 +02:00
Miriam Baglioni 63553a76b3 added code to download gold issn list from unibi 2021-07-22 12:01:48 +02:00
Sandro La Bruzzo d94565862a fixed NPE 2021-07-21 21:23:11 +02:00
Sandro La Bruzzo 31d2d6d41e Scholexplorer: introduction of dedup openaire 2021-07-21 18:09:32 +02:00
Miriam Baglioni d418c309f5 removed the part after part-x- in the file name generated by spark. It was too long and created problems while creating the tar entries 2021-07-13 17:11:49 +02:00
Sandro La Bruzzo ad50415167 Merge remote-tracking branch 'origin/stable_ids' into stable_id_scholexplorer 2021-06-24 17:20:50 +02:00
Claudio Atzori 67afd06cd1 [cleaning] cleaning instance.pid and instance.alternateidentifier using the same procedure used to clean result.pid 2021-06-24 12:10:17 +02:00
Sandro La Bruzzo cc0f2b11fb Implemented mapping from pubmed baseline to OAF 2021-06-16 14:56:24 +02:00
Claudio Atzori 2039bb9f5f orcid / orcid_pending cleaning backported from master branch 2021-06-14 09:40:50 +02:00
Claudio Atzori a900bfb874 delegating the date parsing to https://github.com/sisyphsu/dateparser 2021-06-11 16:53:01 +02:00
Claudio Atzori eb6acfbabc [cleaning] removing non parsable relation.validationDate(s) 2021-05-28 10:50:44 +02:00
Claudio Atzori 9d725efdc1 reverted implementation of the mdstore client 2021-05-20 18:26:09 +02:00
Claudio Atzori 23b8883ab1 applied intellij code cleanup 2021-05-14 10:58:12 +02:00
Claudio Atzori d4c3476152 mapping datasource.journal only when an issn is available, null otherwhise 2021-05-11 11:08:54 +02:00
Claudio Atzori d1cbee8413 imported methods from CleaningFunctions, defined in GraphCleaningFunctions 2021-05-10 16:43:39 +02:00
Claudio Atzori 3797543600 MDStoreManager model classes moved in dhp-schemas 2021-05-10 14:32:05 +02:00
Claudio Atzori b1785ba77c alternative way to set timeouts for the ISLookup client 2021-05-05 11:23:46 +02:00
Claudio Atzori 923d19ea8e mdstore read lock/unlock when bulk copying records from mongodb to hdfs 2021-05-04 18:06:21 +02:00
Claudio Atzori 91e7220f20 cleaned up workflow for actionset migration, adjusted dnet|cnr* dependency versions 2021-04-29 10:09:52 +02:00
Claudio Atzori 5afa7d3e0c core utilities in dhp-common moved in external module dhp-schemas 2021-04-27 15:44:01 +02:00
Claudio Atzori f783e60ff7 cleanup 2021-04-27 14:04:50 +02:00
Claudio Atzori 27ab8a704d adjusted poms to align with the external dhp-schema module 2021-04-27 10:12:27 +02:00
Claudio Atzori c2bb03c8b5 depending on external dhp-schemas module 2021-04-23 17:57:35 +02:00
Claudio Atzori 8704d32780 code formatting 2021-04-15 16:52:58 +02:00
Claudio Atzori ba4b4c74d8 do not make the identifier prefix depend on the Handle 2021-04-15 16:48:26 +02:00
Claudio Atzori 710cd1e8f2 Merge pull request 'add xslt, personname cleaner' (#104) from andreas.czerniak/BrStableId_dnet-hadoop:stable_ids into stable_ids 
Reviewed-on: D-Net/dnet-hadoop#104

LGTM
 2021-04-13 14:43:05 +02:00
Claudio Atzori d1ca025b0b [cleaning] remiving authors without fullname or providing 'deactivated' keyword. Removing test test titles 2021-04-13 14:32:41 +02:00
Andreas Czerniak d7614c1f85 introduce new const 2021-04-13 07:04:27 +02:00
Claudio Atzori 902d05f548 [cleaning] avoiding NPEs handling null author PIDs 2021-04-12 17:31:40 +02:00
Claudio Atzori 72ce741ea6 WIP: using common definitions from ModelConstants 2021-03-31 17:07:13 +02:00
Claudio Atzori 27681b876c code formatting 2021-03-29 17:47:11 +02:00
miconis 2709d08fc2 Merge branch 'stable_ids' into openorgswf 2021-03-29 16:39:07 +02:00
Claudio Atzori 3becaa5539 [Cleaning] drop alternate identifiers with empty values 2021-03-29 16:01:35 +02:00
Claudio Atzori 48f2b6127e [Cleaning] drop alternate identifiers with empty values 2021-03-29 14:23:18 +02:00
miconis 2355cc4e9b minor changes and bug fix 2021-03-29 10:07:12 +02:00
Claudio Atzori b5b7dc2104 [Cleaning] drop alternate identifiers with empty values 2021-03-26 12:30:00 +01:00
Claudio Atzori 827e7e37db [Cleaning] drop instance.alternateIdentifier elements when they are available among instance.pid 2021-03-25 11:07:59 +01:00
Claudio Atzori 431cbe9955 handle missing instance.pid during bulk cleaning 2021-03-23 09:28:58 +01:00
Sandro La Bruzzo c73072079d fix conflicts 2021-03-22 16:36:31 +01:00
Claudio Atzori 3256b9c836 code formatting 2021-03-19 09:36:12 +01:00
Claudio Atzori 75144dacb3 Merge branch 'stable_ids' of https://code-repo.d4science.org/D-Net/dnet-hadoop into stable_ids 2021-03-19 09:07:40 +01:00
Claudio Atzori 9588bfba81 [cleaning] entries avaialbe as PIDs must not appear as alternateIdentifier 2021-03-19 09:07:30 +01:00
Sandro La Bruzzo 25d5663d97 added filter 2021-03-18 10:24:42 +01:00
Sandro La Bruzzo 5f98ea74a9 Added fix for pid generation in stableIds 2021-03-17 15:53:24 +01:00
Claudio Atzori 734232d3b9 identifier factory doesn't depend on pre-existing entity.id 2021-03-17 15:14:53 +01:00
Claudio Atzori a3dac32f16 pidFilter a bit more permissive 2021-03-17 15:06:05 +01:00
Claudio Atzori 8257f9a2bc result.pid: adjusted the mapping applied to the contents from the aggregator 2021-03-17 12:45:38 +01:00
Claudio Atzori 3b2da86f0a added precondition on IdentifierFactory to check the presence of entity.id 2021-03-16 17:05:38 +01:00
Claudio Atzori 640b885706 added instance.alternativeIdentifiers to the graph model, adjusted the mapping applied to the contents from the aggregator 2021-03-16 14:19:32 +01:00
Claudio Atzori f74e464942 create bestaccessright as Qualifier 2021-03-10 15:40:05 +01:00
Claudio Atzori c801ab6c1d minor 2021-03-09 17:22:31 +01:00
Claudio Atzori 9917d7e01c PID authorities include ArXiv 2021-03-09 17:12:52 +01:00
Claudio Atzori 01630f638d IdentifierFactory implementation based on the list of datasources authoritative for a given pid type 2021-03-09 17:11:50 +01:00
Claudio Atzori b3f3b895e5 [#6282 open access status in the Graph] OAStatus renamed as openAccessRoute 2021-03-09 11:41:11 +01:00
Claudio Atzori 765f9bdee7 merged from dhp_oaf_model 2021-03-09 11:37:41 +01:00
Claudio Atzori d525785497 [#6282 open access status in the Graph] Result.Instance.accessRight defined with dedicated data type that includes the open access color. 2021-03-09 11:12:55 +01:00
Claudio Atzori 8d2bb24512 merged from master 2021-03-08 15:44:34 +01:00
Claudio Atzori fa7930d2e2 merging contributions from PR#97 2021-03-05 15:45:28 +01:00
Claudio Atzori ec80b7ade3 code formatting 2021-03-03 10:22:53 +01:00
Claudio Atzori b73dce3e3a more logging on the MDStore mongodb client. Forcing UTF_8 encoding on the content 2021-03-03 10:17:16 +01:00
Claudio Atzori e76c4f62c1 MetadataRecord moved in dhp-schemas 2021-02-26 10:58:48 +01:00
Claudio Atzori b830e33392 mdstore collector plugin 2021-02-25 12:30:30 +01:00
Claudio Atzori dc98c39500 more logging 2021-02-25 12:29:18 +01:00
Claudio Atzori fc3fa5e343 implemented mdstore collector plugin 2021-02-24 15:07:24 +01:00
Claudio Atzori cf27905a71 WIP: collectorWorker error reporting, added report messages 2021-02-16 16:53:14 +01:00
Claudio Atzori 58288a95b8 WIP: collectorWorker error reporting, added report messages 2021-02-15 15:28:53 +01:00
Claudio Atzori 1abe6d1ad7 WIP: collectorWorker error reporting, added report messages 2021-02-15 15:08:59 +01:00
Claudio Atzori 29c6f7e255 classes related to the collection workflow moved into common package; implemented MongoDB collection plugins 2021-02-12 12:31:02 +01:00
Claudio Atzori 50add4c61b added requestDelay to HttpConnector2 configuration; Aggregation workflow constants moved in dhp-common 2021-02-08 12:19:38 +01:00
Claudio Atzori 40df0f987d better logging, WIP: collectorWorker error reporting; common functions moved in DHPUtils 2021-02-06 20:12:00 +01:00
Claudio Atzori a8a758925e better logging, WIP: collectorWorker error reporting 2021-02-05 19:18:05 +01:00
Michele Artini 2ee0c3e47e http entity as json string 2021-02-05 09:45:39 +01:00
Claudio Atzori 730973679a Merge branch 'hadoop_aggregator' of https://code-repo.d4science.org/D-Net/dnet-hadoop into hadoop_aggregator 2021-02-04 17:25:00 +01:00
Claudio Atzori deb85706db imported HttpConnector from https://svn.driver.research-infrastructures.eu/driver/dnet45/modules/dnet-modular-collector-service/trunk/src/main/java/eu/dnetlib/data/collector/plugins/HttpConnector.java as HttpConnector2 2021-02-04 17:24:52 +01:00
Sandro La Bruzzo 4dae5e605d implemented messaging btween collection worker and Dnet 2021-02-04 15:51:15 +01:00