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2745 Commits

Author SHA1 Message Date
Miriam Baglioni 801763a0fa there is no more the need to lower case the doi since it is done in the first step. Also changed the creation of the id by using the factory 2021-06-29 19:07:23 +02:00
Miriam Baglioni a74de1cda2 added normalization step to the doi 2021-06-29 18:51:11 +02:00
Miriam Baglioni 06074ea7d3 added normalization step to the doi 2021-06-29 18:46:08 +02:00
Miriam Baglioni 8b8ffe82dc added step of normalization for the doi 2021-06-29 18:41:39 +02:00
Miriam Baglioni 50cc21d92e Added method to normalize doi values (lower case, remove all preceeding 10., filtering out doi not starting with 10.) 2021-06-29 18:35:28 +02:00
Claudio Atzori 6d3f960238 Merge pull request 'added the missing indicators files' (#120) from antonis.lempesis/dnet-hadoop:stable_ids into stable_ids 
Reviewed-on: D-Net/dnet-hadoop#120
 2021-06-29 15:57:39 +02:00
Antonis Lempesis ae18171212 Merge branch 'stable_ids' into stable_ids 2021-06-29 15:33:39 +02:00
Antonis Lempesis 87f14a3899 added the missing indicators files 2021-06-29 16:31:51 +03:00
Claudio Atzori 986a8011ec Merge pull request 'copied latest changes from old fork: indicators+monitor institutions' (#119) from antonis.lempesis/dnet-hadoop:stable_ids into stable_ids 
Reviewed-on: D-Net/dnet-hadoop#119
 2021-06-29 08:49:12 +02:00
Antonis Lempesis 018c4eb52c copied latest changes from old fork: indicators+monitor institutions 2021-06-28 23:46:52 +03:00
Claudio Atzori af42377d0e HttpClient used in metadata collection retries on 502, 503, 504 2021-06-28 09:34:30 +02:00
Claudio Atzori 67afd06cd1 [cleaning] cleaning instance.pid and instance.alternateidentifier using the same procedure used to clean result.pid 2021-06-24 12:10:17 +02:00
Claudio Atzori 2e8fd2c531 cleanup 2021-06-23 14:38:24 +02:00
Claudio Atzori 4dc9ebf217 [raw_all] fixed unit test 2021-06-23 14:38:07 +02:00
Claudio Atzori 50fc5a64a0 [raw_all] Aggregator graph creation merges claims (updates) with the corresponding entity 2021-06-23 11:49:42 +02:00
Claudio Atzori 5edcc6832a applying sonarLint suggestions 2021-06-23 09:53:29 +02:00
Claudio Atzori 2dd5449c13 Merge branch 'stable_ids' of https://code-repo.d4science.org/D-Net/dnet-hadoop into stable_ids 2021-06-18 10:08:15 +02:00
Claudio Atzori fd54ecf7bd bumped dhp-schemas dependency version 2021-06-18 10:08:07 +02:00
Miriam Baglioni 180d671127 Merge branch 'stable_ids' of https://code-repo.d4science.org/D-Net/dnet-hadoop into stable_ids 2021-06-18 09:46:18 +02:00
Miriam Baglioni 13c96622c9 - 2021-06-18 09:45:16 +02:00
Miriam Baglioni b486ae498f added test and test resource to verify the generation of the date of acceptance from the input extracted from the dump 2021-06-18 09:43:32 +02:00
Miriam Baglioni 464c2ddde3 changed to split in two steps the generation of the crossref dataset 2021-06-18 09:42:31 +02:00
Miriam Baglioni 6aca0d8ebb added kryo encoding for input files 2021-06-18 09:42:07 +02:00
Miriam Baglioni 3585e53da3 changed to split in two steps the generation of the crossref dataset 2021-06-18 09:41:23 +02:00
Claudio Atzori 41b551562e applying PR#115 (DatePicker) on stable_ids 2021-06-17 09:33:50 +02:00
Claudio Atzori 74833d04f1 Merge branch 'pids_beta' of https://code-repo.d4science.org/antonis.lempesis/dnet-hadoop into stable_ids 2021-06-16 15:54:18 +02:00
Claudio Atzori 7243a40c88 code formatting 2021-06-16 15:03:03 +02:00
Miriam Baglioni 95885bcf12 forces executor Executor memory and driver executor memory to be 7G (trying to avoid OOM) 2021-06-16 10:17:52 +02:00
Miriam Baglioni 2550a73981 - 2021-06-16 10:04:41 +02:00
Miriam Baglioni 1c47c0d786 modified the number of executors trying to avoid OOM exception 2021-06-15 21:05:39 +02:00
Miriam Baglioni 7deac55138 added one option for resume from in the wf 2021-06-15 18:38:20 +02:00
Antonis Lempesis f7c0b80e35 storing result_instance as parquet 2021-06-15 14:45:48 +03:00
Miriam Baglioni 66e7ef892f changed the parameter name 2021-06-15 11:08:54 +02:00
Miriam Baglioni 4f47ad0891 no need to rename the folders, just write in overwrite mode, so I changed the name of the output folder 2021-06-15 09:28:31 +02:00
Miriam Baglioni 9f9dd00b94 refactoring 2021-06-15 09:24:46 +02:00
Miriam Baglioni 63d74ee379 refactoring 2021-06-15 09:24:11 +02:00
Miriam Baglioni 6ebc236657 added needed property: outputPath 2021-06-15 09:23:24 +02:00
Miriam Baglioni f7379255b6 changed the workflow to extract info from the dump 2021-06-15 09:22:54 +02:00
Miriam Baglioni d6e21bb6ea creates the crossref dataset used for doiboost together with unpacking part from tar 2021-06-14 17:27:19 +02:00
Miriam Baglioni 4da141bd7c Merge branch 'stable_ids' of https://code-repo.d4science.org/D-Net/dnet-hadoop into stable_ids 2021-06-14 13:41:02 +02:00
Miriam Baglioni ce0cfd79e0 creates the crossref dataset used for doiboost 2021-06-14 13:40:19 +02:00
Miriam Baglioni 93efe4de82 split the construction of crossref dataset in two parts. This one just unpacks the tar entries 2021-06-14 13:39:40 +02:00
Michele Artini ada063ce70 fixed a problem with empty mdstore list (2) 2021-06-14 12:04:47 +02:00
Michele Artini 83132ee99a fixed a problem with empty mdstore list 2021-06-14 11:57:00 +02:00
Miriam Baglioni cf360d7c97 Merge branch 'stable_ids' of https://code-repo.d4science.org/D-Net/dnet-hadoop into stable_ids 2021-06-14 10:19:49 +02:00
Miriam Baglioni 8873e6b6d1 workflow and parameter 2021-06-14 10:15:57 +02:00
Miriam Baglioni 0f1acdf6b6 workflow and parameter 2021-06-14 10:08:55 +02:00
Miriam Baglioni 75780fc636 extraction of the tar for the dump of crossref, and creation of the dataset 2021-06-14 09:45:07 +02:00
Claudio Atzori 2039bb9f5f orcid / orcid_pending cleaning backported from master branch 2021-06-14 09:40:50 +02:00
Claudio Atzori dd19c4ac5a Merge pull request 'import_new_mdstores' (#112) from import_new_mdstores into stable_ids 
Reviewed-on: D-Net/dnet-hadoop#112
 2021-06-14 09:23:55 +02:00