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2888 Commits

Author SHA1 Message Date
Claudio Atzori 512e7b0170 code formatting 2021-10-19 16:19:29 +02:00
Claudio Atzori e9157c67aa Merge branch 'beta' into dump 2021-10-19 16:15:03 +02:00
Claudio Atzori 98f37c8d81 WIP: worflow nodes for including Scholexplorer records in the RAW graph 2021-10-19 16:14:40 +02:00
Claudio Atzori c8850456e9 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2021-10-19 16:09:54 +02:00
Sandro La Bruzzo c9870c5122 code formatted 2021-10-19 15:24:59 +02:00
Sandro La Bruzzo f8329bc110 since dhp-schemas changed, introducing new Relation inverse model, this class has been updated 2021-10-19 15:24:22 +02:00
Claudio Atzori 7a73010acd WIP: worflow nodes for including Scholexplorer records in the RAW graph 2021-10-19 11:59:16 +02:00
Miriam Baglioni c7f6cd2591 added again the setting for saXReader 2021-10-19 10:15:26 +02:00
miconis 5f780a6ba1 bug fix in migrate entities: parameter name was wrong 2021-10-18 23:30:40 +02:00
Miriam Baglioni 1315952702 merge with branch beta 2021-10-18 14:17:09 +02:00
Miriam Baglioni 1cc09adfaa Opencitations: chenaged the test class to mirror the creation or not of duplicate dois for .refs oc original plus added optional parameter to duplicate the relation 2021-10-18 14:11:27 +02:00
Miriam Baglioni 76d41602be Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2021-10-18 10:53:22 +02:00
Miriam Baglioni 46f82c7c8f removed not needed folder deletion 2021-10-18 10:53:16 +02:00
Sandro La Bruzzo 7b15b88d4c renamed wrong package, implemented last aggregation workflow for scholexplorer 2021-10-15 15:00:15 +02:00
Antonis Lempesis 41ecb1eb61 invalidating medatadata before context thingies 2021-10-15 13:42:55 +03:00
Antonis Lempesis 4b7c8dff2d fetching affiliated results for 4 orgs in monitor. fixed affiliated orgs in stats db 2021-10-14 18:53:35 +03:00
Sandro La Bruzzo 51a03c0a50 refactor code for EBI from dhp-graph-mapper into dhp-aggregation 2021-10-14 14:23:13 +02:00
Claudio Atzori 14fbf92ad6 Merge branch 'beta' into beta_solr_config 2021-10-14 11:08:44 +02:00
Claudio Atzori b292e4a700 [stats wf] added extra logging in the context data retrieval phase 2021-10-13 17:31:53 +02:00
miconis 995c1eddaf minor change 2021-10-13 17:07:10 +02:00
Miriam Baglioni 5d9cc2452d changed the working path parameter value as dependant from the dnet-workflow working dir parameter 2021-10-13 15:33:50 +02:00
miconis 326bf63775 integration of parent child orgs relations 2021-10-13 12:24:48 +02:00
Miriam Baglioni 16b28494a9 added new parameter in the doiboost process workflow to specify a folder for the process of MAG dataset 2021-10-13 11:34:24 +02:00
Miriam Baglioni 63933808d4 added fix for mixing result types, added configuration default to funder subworkflow 2021-10-13 11:28:28 +02:00
Sandro La Bruzzo 7387416e90 added params skip update to direct transform in OAF, this should be set to true in production 2021-10-12 12:36:30 +02:00
Sandro La Bruzzo 511da98d0c - fixed bug on download pmc Article 
- removed unused line of code in SparkCreateActionset
 2021-10-12 11:47:49 +02:00
Miriam Baglioni fec40bdd95 merging with branch beta - resolved conflicts 2021-10-12 09:16:36 +02:00
Miriam Baglioni 83f51f1812 refactoring 2021-10-12 09:14:43 +02:00
Sandro La Bruzzo 5606014b17 code refactor see ticket #7065 2021-10-12 08:11:53 +02:00
Serafeim Chatzopoulos 201ce71cc1 Add resultsubject, relprojectname and resultacceptanceyear to __all field 2021-10-11 13:16:39 +03:00
Serafeim Chatzopoulos e468a7b96b Add tests to query Solr with different configurations 2021-10-08 16:58:51 +03:00
Serafeim Chatzopoulos de81007302 Add exploreTestConfig, a new Solr configuration folder 2021-10-08 16:54:56 +03:00
Sandro La Bruzzo 8f99d2af86 Make the node of doiBoost to point to the correct OpenAire Organization in relations 2021-10-08 08:35:12 +02:00
Alessia Bardi c48c43fa9e Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2021-10-07 17:30:53 +02:00
Alessia Bardi 8d3b60f446 test for patching records for EOSC Future 2021-10-07 17:30:45 +02:00
miconis 611ca511db set configuration property in openorgs duplicates wf 2021-10-07 15:39:55 +02:00
miconis 9646b9fd98 implementation of the http call for the update of openorgs suggestions 2021-10-07 11:29:11 +02:00
Sandro La Bruzzo 2557bb41f5 Implemented new method for update baseline inside scala node 2021-10-06 16:41:08 +02:00
Sandro La Bruzzo b84e0cabeb Implemented new method for update baseline 2021-10-05 16:34:47 +02:00
Sandro La Bruzzo f258bbb927 Merge branch 'beta' of code-repo.d4science.org:D-Net/dnet-hadoop into beta 2021-10-05 10:21:50 +02:00
Sandro La Bruzzo 991b06bd0b removed generation of EBI links from old dump, now EBI link dump is created by another wf 2021-10-05 10:21:33 +02:00
Claudio Atzori cb7efe12ac Merge pull request 'beta' (#146) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: D-Net/dnet-hadoop#146
 2021-10-05 10:09:37 +02:00
Miriam Baglioni e653756e3d applied some suggestiond from Sonar Lint 2021-10-04 18:40:07 +02:00
dimitrispie 3f25d2efb2 Merge branch 'beta' of https://code-repo.d4science.org/antonis.lempesis/dnet-hadoop into beta 2021-10-01 16:03:48 +03:00
dimitrispie 13687fd887 Sprint 3 indicators update 2021-10-01 16:02:02 +03:00
Miriam Baglioni 9814c3e700 mergin with branch beta 2021-10-01 13:00:03 +02:00
Miriam Baglioni c4ccd7b32c - 2021-10-01 12:59:47 +02:00
Miriam Baglioni c8321ad31a merge with branch beta 2021-10-01 12:59:08 +02:00
Claudio Atzori 60a6a9a583 [graph2hive] added field 'measures' to the result view 2021-09-30 09:27:26 +02:00
Sandro La Bruzzo 66702b1973 Added node to update datacite 2021-09-28 08:59:06 +02:00
Sandro La Bruzzo 477cb10715 Merge remote-tracking branch 'origin/beta' into beta 2021-09-27 16:57:23 +02:00
Sandro La Bruzzo be79d74e3d Fixed DoiBoost generation to point to correct organization in affiliation relation 2021-09-27 16:57:04 +02:00
Claudio Atzori 474117c2e8 Merge branch 'beta' into dedup_whitelist 2021-09-27 16:41:25 +02:00
Miriam Baglioni 476a4708d6 mergin with branch beta 2021-09-27 16:02:32 +02:00
Miriam Baglioni 5ec69889db OpenCitations: creation of AS from OC 2021-09-27 16:02:06 +02:00
Claudio Atzori a53acfbc06 Merge pull request '[stats] updates in the mapping, indicators, wf' (#145) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: D-Net/dnet-hadoop#145
 2021-09-27 15:59:54 +02:00
Alessia Bardi b924276e18 tests to generate records for the EOSC-Future demo with the EOSC Jupyter Notebbok subject 2021-09-24 17:11:56 +02:00
Antonis Lempesis a1e1cf32d7 fixed an impala error 2021-09-24 12:57:24 +03:00
Antonis Lempesis f358cabb2b fixed typo 2021-09-22 21:50:37 +03:00
Miriam Baglioni eedf7c3310 mergin with branch beta 2021-09-22 15:18:34 +02:00
Miriam Baglioni f2118d771a first steps in the implementation of the integration of opencitations 2021-09-22 15:18:05 +02:00
Claudio Atzori 7fa60e166e Merge branch 'beta' into dedup_whitelist 2021-09-22 11:31:18 +02:00
Antonis Lempesis 421d55265d created hive action for observatory queries 2021-09-21 03:07:58 +03:00
Enrico Ottonello 92a63f78fe multiple download attempts handling if a connection to orcid server fails 2021-09-20 18:25:00 +02:00
Enrico Ottonello 0c74f5667e Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2021-09-20 18:12:31 +02:00
miconis 853333bdde implementation of the whitelist for similarity relations 2021-09-20 16:21:47 +02:00
Antonis Lempesis 8b681dcf1b attempt to make the observatory wf run in hive 2021-09-18 00:35:14 +03:00
Antonis Lempesis 2943287d10 fixed the definition of cc_licence, part II 2021-09-16 15:59:06 +03:00
Antonis Lempesis dd2329849f fixed the definition of cc_licence 2021-09-16 13:50:34 +03:00
Claudio Atzori 09c2eb7f62 Merge branch 'beta' into clean_relations 2021-09-16 11:09:47 +02:00
Miriam Baglioni e9ccdf853f related to D-Net/dnet-hadoop#132 2021-09-15 18:44:54 +02:00
Claudio Atzori 12766bf5f2 Merge branch 'beta' into clean_relations 2021-09-15 17:18:15 +02:00
Claudio Atzori 663b1556d7 manually integrating PR#140 D-Net/dnet-hadoop#140 2021-09-15 16:40:25 +02:00
Claudio Atzori ebf53a1616 added cleaning for relation fields: subRelType & relClass according to dedicated vocabs 2021-09-15 16:10:37 +02:00
Enrico Ottonello 8b804e7fe1 removed unused imports 2021-09-14 17:30:52 +02:00
Enrico Ottonello aefa36c54b other task executions go ahead if UnknownHostException happens on a single task 2021-09-14 17:26:15 +02:00
Antonis Lempesis de9bf3a161 added cc_licences and abstracts in observatory db 2021-09-14 01:29:08 +03:00
Antonis Lempesis 9b1936701c fixed yet another typo 2021-09-13 21:07:44 +03:00
Antonis Lempesis 8fc89ae822 moved context table creation before indicators 2021-09-13 14:33:23 +03:00
Antonis Lempesis 461bf90ca6 fixed the gold_oa definition 2021-09-13 11:10:30 +03:00
Antonis Lempesis 43852bac0e creating other::other concept for all contexts 2021-09-13 01:36:41 +03:00
Antonis Lempesis f13cca7e83 moved dependencies of indicators before them... 2021-09-08 23:07:58 +03:00
Antonis Lempesis c6ada217a1 fixed typo 2021-09-08 22:34:59 +03:00
Antonis Lempesis 1250ae197f using new indicators for the definition of peerreviewed, gold, and green 2021-09-08 14:08:43 +03:00
Antonis Lempesis ccee451dde added indicators of sprint 2 in monitor db 2021-09-07 23:17:13 +03:00
Sandro La Bruzzo aed29156c7 changed behavior in transformation job, that doesn't fail at first error 2021-09-07 19:05:46 +02:00
Sandro La Bruzzo 3c6fc2096c fix bug on oai iterator that skip record cleaned 2021-09-07 10:46:26 +02:00
Sandro La Bruzzo d4dadf6d77 reduced max number of PID in Relatedentity 2021-09-02 14:21:24 +02:00
Sandro La Bruzzo 9f8a80deb7 fixed wrong import of unresolved relation in openaire 2021-09-01 14:16:27 +02:00
Alessia Bardi 3762b17f7b added VERSIOn and PART relationship and re-ordered according to my personal and obviously possibly biased 
ordering
 2021-08-31 20:20:05 +02:00
Sandro La Bruzzo e8b3cb9147 Implemented method to download delta updates in EBI Links 2021-08-30 09:32:45 +02:00
Alessia Bardi ccf4103a25 keep the original url if the decoder fails for any reason 2021-08-25 10:07:58 +02:00
Sandro La Bruzzo 45898c71ac fixed wrong doi in pubmed 2021-08-24 15:20:04 +02:00
Alessia Bardi 00a28c0080 originalId was renamed to acronym 2021-08-23 15:02:21 +02:00
Alessia Bardi f19b04d41b code formatting after mvn compile 2021-08-23 14:33:39 +02:00
Alessia Bardi 931f430129 Merge branch 'beta' into datasource_model_eosc_beta 2021-08-23 11:57:21 +02:00
Alessia Bardi 4c1474e693 Dealing with #6859#note-2: we have to decode URLs to avoid & and other chars encoded becasue of the original XML representation of data 2021-08-20 17:03:30 +02:00
Miriam Baglioni 5f8ccbc365 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2021-08-20 11:13:47 +02:00
Miriam Baglioni 882abb40e4 CrossrefDump - 2021-08-20 11:12:53 +02:00
Miriam Baglioni 45c62609af CrossrefDump - modified because parameter file was moved 2021-08-20 11:12:31 +02:00