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2680 Commits

Author SHA1 Message Date
Claudio Atzori 741077dbca Merge pull request 'Fix in Affiliation Propagation' (#113) from miriam.baglioni/dnet-hadoop:master into stable_ids 
Reviewed-on: D-Net/dnet-hadoop#113
 2021-06-09 18:42:42 +02:00
Miriam Baglioni 32b0c27217 Aggiornare 'dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/resulttoorganizationfrominstrepo/PrepareResultInstRepoAssociation.java' 
fix in SQL query: while writing the blacklist constraint it used d.id to indicate the datasource id, but no alias for the datasource was defined. So I removed the alias
 2021-06-09 18:36:11 +02:00
Miriam Baglioni dc07f1079b added check in case the author set to be enriched is null 2021-06-08 12:06:10 +02:00
Miriam Baglioni 8d2e086e48 changes to avoid reassignment to val 2021-06-07 17:50:37 +02:00
Miriam Baglioni f33521d338 Aggiornare 'dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcid/SparkConvertORCIDToOAF.scala' 
to be able to replace the aboject assigned to author val has been replaced by var
 2021-06-07 17:27:07 +02:00
Miriam Baglioni bc12e9819e Aggiornare 'dhp-workflows/dhp-doiboost/src/main/java/eu/dnetlib/doiboost/orcid/SparkConvertORCIDToOAF.scala' 
The change is to fix the issue that arises when the same work appears more than once on the same ORCID profile. The change avoid to replicate the association doi -> author when the orcid id is already associated to the doi.
 2021-06-07 16:37:01 +02:00
Sandro La Bruzzo e57294ac99 implemented changes on PUBMed dataflow 2021-06-03 10:52:09 +02:00
Sandro La Bruzzo 02ef46535f Merge branch 'stable_ids' of code-repo.d4science.org:D-Net/dnet-hadoop into stable_ids 2021-05-31 09:50:15 +02:00
Sandro La Bruzzo aeadc5a366 updated wf Datacite Import to retrieve the block size as parameter 2021-05-31 09:49:53 +02:00
Claudio Atzori 96238152cb added serialization for alternateIdentifiers and pids within each record instance 2021-05-28 16:57:30 +02:00
Claudio Atzori 83722ebc47 pull #111 replied on stable_ids 2021-05-28 14:11:46 +02:00
Claudio Atzori eb6acfbabc [cleaning] removing non parsable relation.validationDate(s) 2021-05-28 10:50:44 +02:00
Claudio Atzori 6e3a4e9237 updated test expectations 2021-05-28 09:37:50 +02:00
Claudio Atzori ac3d090e9e bumped dhp-schemas dependency version 2021-05-27 17:31:12 +02:00
Claudio Atzori c3d92247d3 bumped dhp-schemas dependency version 2021-05-27 15:10:51 +02:00
Claudio Atzori d512062b58 integrating pull #109, H2020Classification 2021-05-27 12:22:47 +02:00
Claudio Atzori 5e4b91d9ef more pervasive use of constants from ModelConstants, especially for ORCID 2021-05-26 18:20:23 +02:00
Sandro La Bruzzo bced804151 updated wf Datacite Import to retrieve the block size as parameter 2021-05-26 17:06:50 +02:00
Claudio Atzori 4f58418184 depending on dhp-schemas:2.4.7 (release) 2021-05-24 10:32:48 +02:00
Miriam Baglioni abd88f663d changed test resource to mirror change in the input file 2021-05-21 15:20:47 +02:00
Miriam Baglioni c844877de2 changed workflow flow to possibly parallelize also the programme and project preparation steps 2021-05-21 14:41:57 +02:00
Miriam Baglioni 073d76864d refactoring 2021-05-21 14:41:03 +02:00
Miriam Baglioni 4c8b4a774c removed not needed code 2021-05-21 14:40:07 +02:00
Miriam Baglioni 53b9d87fec new prepareProgramme according to the new file 2021-05-21 11:49:31 +02:00
Miriam Baglioni 1ee8f13580 refactoring and added "left" as join type to be 100% sure to get the whole set of projects 2021-05-21 11:49:05 +02:00
Miriam Baglioni e07c3ba089 due to change in the input file the filtering step is no more needed 2021-05-21 11:47:43 +02:00
Miriam Baglioni 54f6e2f693 changed to get the needed information to build the action set as parallel jobs 2021-05-21 11:47:00 +02:00
Miriam Baglioni 7180505519 removed non needed variable 2021-05-21 11:46:13 +02:00
Miriam Baglioni 2eb1a8b344 changed because the input file changed 2021-05-21 11:40:20 +02:00
Claudio Atzori 9d725efdc1 reverted implementation of the mdstore client 2021-05-20 18:26:09 +02:00
Miriam Baglioni 9610224671 added param to workflow property 2021-05-20 18:21:12 +02:00
Claudio Atzori 863b56b6ce using constants from ModelConstants 2021-05-20 16:23:58 +02:00
Claudio Atzori ae5c28e54f code formatting 2021-05-20 16:13:06 +02:00
Miriam Baglioni aa45b4df9b - 2021-05-20 15:57:40 +02:00
Miriam Baglioni 052c837843 - 2021-05-20 15:54:44 +02:00
Claudio Atzori b695932ae4 integrated pull#108 2021-05-20 15:34:04 +02:00
Claudio Atzori b572f56763 Merge branch 'master' into master 2021-05-20 15:22:35 +02:00
Claudio Atzori 2578b7fbb3 code formatting 2021-05-20 14:59:02 +02:00
Miriam Baglioni dc0ad8d2e0 fixed issue related to change in the file name downloaded. Added sheet name as parameter and also a check if the name should change 2021-05-20 14:53:53 +02:00
Claudio Atzori 232dce83db fixes #6701: xpath for titles to support both datacite and Guidelines v4 mapping 2021-05-20 14:41:15 +02:00
Claudio Atzori aef2977ad0 fixes #6701: xpath for titles to support both datacite and Guidelines v4 mapping 2021-05-20 14:40:22 +02:00
Miriam Baglioni 02b80cf24f resolved conflicts 2021-05-20 10:59:39 +02:00
Claudio Atzori c4a23c2f4d fix: preserving the old identifier among the originalIds in the doiboost construction process, trying to avoid UnsupportedOperationException while adding elements to the originalIds 2021-05-19 16:01:52 +02:00
Claudio Atzori ba03f549d7 fix: preserving the old identifier among the originalIds in the doiboost construction process 2021-05-19 15:43:26 +02:00
Claudio Atzori 239d0f0a9a ROR actionset import workflow backported from branch stable_ids 2021-05-18 16:12:11 +02:00
Michele Artini e56ccec536 Merge branch 'stable_ids' of code-repo.d4science.org:D-Net/dnet-hadoop into stable_ids 2021-05-18 14:00:28 +02:00
Michele Artini c1e20de7cf fixed the deserialization of a json property 2021-05-18 14:00:14 +02:00
Claudio Atzori a9f512103b using constants from ModelConstants 2021-05-18 11:19:07 +02:00
Claudio Atzori eeb8bcf075 using constants from ModelConstants 2021-05-18 11:10:07 +02:00
Claudio Atzori 2cbf15f4fb using ModelConstants 2021-05-17 09:54:45 +02:00