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1382 Commits

Author SHA1 Message Date
Claudio Atzori a5f23d8a4c WIP: materialize graph as Hive DB 2020-08-07 15:33:07 +02:00
Claudio Atzori cce21eafc2 WIP: materialize graph as Hive DB, configured spark actions to include hive support] 2020-08-06 21:48:29 +02:00
Claudio Atzori fde8738ed2 added hiveMetastoreUris parameter to default parameters 2020-08-06 21:46:47 +02:00
Claudio Atzori 3be0e5c2cd Merge branch 'master' into graph_db 2020-08-05 12:54:48 +02:00
Alessia Bardi a29565ff57 code formatting 2020-08-04 12:55:27 +02:00
Alessia Bardi 01db29e208 fixes redmine issue #5846: datacite and its different namespace declarations 2020-08-04 12:53:48 +02:00
Alessia Bardi b4e4e5f858 do not duplicate result PIDs 2020-08-04 12:52:14 +02:00
Alessia Bardi 09a323d18d testing a dataset from Nakala 2020-08-04 12:50:52 +02:00
Alessia Bardi c35bf486cc added handle among the possible PIDs 2020-08-04 12:50:12 +02:00
Claudio Atzori f3ce97ecf9 WIP: materialize graph as Hive DB, mergeAggregatorGraphs [added workflow node to drop the DB] 2020-08-04 12:29:42 +02:00
Claudio Atzori 771bf8bcc4 WIP: materialize graph as Hive DB, mergeAggregatorGraphs 2020-08-04 12:26:09 +02:00
Claudio Atzori 0da1d2c0c9 introduced GraphFormat.DEFAULT, indicating a common value to be used across the workflows 2020-08-04 12:25:31 +02:00
Claudio Atzori 1fcc28968e integrated changes from master 2020-08-04 10:57:44 +02:00
Claudio Atzori da2f8af72d adjusted MergeClaimsApplication param specs 2020-08-03 19:56:16 +02:00
Alessia Bardi 8cc067fe76 specific test for claims 2020-08-03 11:17:50 +02:00
Claudio Atzori a89b6cc3ba Merge pull request 'nsprefix_blacklist' (#34) from nsprefix_blacklist into master 2020-07-31 11:52:23 +02:00
Sandro La Bruzzo 0c3bc9ea4b Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-07-31 09:07:18 +02:00
Sandro La Bruzzo 168bfb496a adopted dedup to the new schema 2020-07-31 09:06:57 +02:00
Michele Artini 652b13abb6 Merge branch 'master' into nsprefix_blacklist 2020-07-31 07:58:37 +02:00
Claudio Atzori cd631bb5bc defaults fixed in the cleaning workflow forces result.publisher to NULL when result.publisher.value in empty 2020-07-30 17:03:53 +02:00
Claudio Atzori 4bbfcf1ac6 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-07-30 16:25:06 +02:00
Claudio Atzori 4ff8007518 added function to set the missing vocabulary names, used in the cleaning workflow as a pre-cleaning step 2020-07-30 16:24:39 +02:00
Michele Artini bdece15ca0 blacklist of nsprefix 2020-07-30 16:13:38 +02:00
Sandro La Bruzzo c97c8f0c44 implemented new oozie job to extract entities in a separate dataset 2020-07-30 12:13:58 +02:00
Claudio Atzori 4ff184973b code formatting 2020-07-30 11:33:03 +02:00
Sandro La Bruzzo 3010a362bc updated changing in the workflow of provision in the phase of aggregation. Removed serialization in JSON RDD and used spark Dataset 2020-07-30 09:25:56 +02:00
Sandro La Bruzzo 487226f669 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-07-30 09:25:39 +02:00
Sandro La Bruzzo 16ae3c9ccf updated changing in the workflow of provision in the phase of aggregation. Removed serialization in JSON RDD and used spark Dataset 2020-07-30 09:25:32 +02:00
Claudio Atzori 9e594cf4c2 WIP: materialize graph as Hive DB, aggregator graph 2020-07-29 19:25:11 +02:00
Claudio Atzori ee0b2191f8 adjusted test assertions to reflect update ordering defined in SortableRelationKey 2020-07-29 14:37:35 +02:00
Claudio Atzori fd289d389c adjusted dedup stats block test assertions to reflect updated configuration 2020-07-29 14:36:52 +02:00
Michele Artini 8ba94833bd added an es prop 2020-07-29 14:16:08 +02:00
Claudio Atzori 2dbac631c9 WIP: factoring out utilities into dhp-workflows-common 2020-07-29 13:08:20 +02:00
Claudio Atzori 91811ab43a Merge branch 'master' into graph_db 2020-07-28 15:15:27 +02:00
Claudio Atzori 6f11c0496e fixed typo in module name dhp-worfklow-profiles -> dhp-workflow-profiles 2020-07-28 15:01:58 +02:00
Claudio Atzori b0b6c6bd47 WIP dhp-workflows-common 2020-07-28 14:59:14 +02:00
Claudio Atzori f680eb3e12 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-07-28 14:10:56 +02:00
Claudio Atzori 985b360c31 fixed typo in module name dhp-worfklow-profiles -> dhp-workflow-profiles 2020-07-28 14:10:52 +02:00
Claudio Atzori 7fc27bfdd1 Merge pull request 'islookup_timeout' (#30) from islookup_timeout into master 
Thanks, Michele!
 2020-07-28 13:53:12 +02:00
Michele Artini 3acd632123 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-07-28 12:02:30 +02:00
Michele Artini 35e6e9c064 tests 2020-07-28 12:02:15 +02:00
Claudio Atzori 2c4196ab22 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop into islookup_timeout 2020-07-27 17:40:58 +02:00
Claudio Atzori ee832f358e Merge pull request 'stats_wf_extensions_and_corrections' (#28) from spyros/dnet-hadoop:stats_wf_extensions_and_corrections into master 
Thank you Guys! The update workflow will be made available to the beta & production orchestration systems under the HDFS path

```/lib/dnet/oa/graph/stats/oozie_app```
 2020-07-27 16:02:03 +02:00
Antonis Lempesis 4ac8ebe427 correctly calculating the project duration 2020-07-24 19:50:40 +03:00
Antonis Lempesis 18d9464b52 creating shadow db only if it not exists... 2020-07-24 19:50:40 +03:00
Antonis Lempesis e217d496ab added the dest db... 2020-07-24 19:50:40 +03:00
Antonis Lempesis b16bb68b9f added the target db name... 2020-07-24 19:50:40 +03:00
Antonis Lempesis 1ee7eeedf3 added the source db name... 2020-07-24 19:50:40 +03:00
Antonis Lempesis cecbbfa0fc added missing tables and views: contexts, creation_date, funder 2020-07-24 19:50:40 +03:00
Antonis Lempesis 25b7a615f5 moved datasource_sources table creating in the datasource section 2020-07-24 19:50:40 +03:00