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code formatting

This commit is contained in:
Claudio Atzori 2020-10-07 13:14:31 +02:00
parent 1abcabb6e6
commit 8958f20813
7 changed files with 72 additions and 68 deletions
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16
dhp-common/src/main/java/eu/dnetlib/dhp/schema/oaf/utils/IdentifierFactory.java
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@ -1,13 +1,14 @@
package eu.dnetlib.dhp.schema.oaf.utils;
import java.io.Serializable;
import java.util.Objects;
import org.apache.commons.lang.StringUtils;
import eu.dnetlib.dhp.schema.oaf.OafEntity;
import eu.dnetlib.dhp.schema.oaf.StructuredProperty;
import eu.dnetlib.dhp.utils.DHPUtils;
import org.apache.commons.lang.StringUtils;
import java.io.Serializable;
import java.util.Objects;
/**
* Factory class for OpenAIRE identifiers in the Graph
@ -16,7 +17,8 @@ public class IdentifierFactory implements Serializable {
public static final String ID_SEPARATOR = "::";
public static final String ID_PREFIX_SEPARATOR = "|";
public final static String ID_REGEX = "^[0-9][0-9]\\"+ID_PREFIX_SEPARATOR+".{12}"+ID_SEPARATOR+"[a-zA-Z0-9]{32}$";
public final static String ID_REGEX = "^[0-9][0-9]\\" + ID_PREFIX_SEPARATOR + ".{12}" + ID_SEPARATOR
+ "[a-zA-Z0-9]{32}$";
public static final int ID_PREFIX_LEN = 12;
public static <T extends OafEntity> String createIdentifier(T entity) {
@ -37,7 +39,7 @@ public class IdentifierFactory implements Serializable {
}
private static String verifyIdSyntax(String s) {
if(StringUtils.isBlank(s) || !s.matches(ID_REGEX)) {
if (StringUtils.isBlank(s) || !s.matches(ID_REGEX)) {
throw new RuntimeException(String.format("malformed id: '%s'", s));
} else {
return s;
@ -55,7 +57,7 @@ public class IdentifierFactory implements Serializable {
}
private static String normalizePidValue(String value) {
//TODO more aggressive cleaning? keep only alphanum and punctuation?
// TODO more aggressive cleaning? keep only alphanum and punctuation?
return value.toLowerCase().replaceAll(" ", "");
}

1
dhp-common/src/main/java/eu/dnetlib/dhp/schema/oaf/utils/PidType.java
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@ -1,3 +1,4 @@
package eu.dnetlib.dhp.schema.oaf.utils;
import org.apache.commons.lang3.EnumUtils;

30
dhp-common/src/test/java/eu/dnetlib/dhp/schema/oaf/utils/IdentifierFactoryTest.java
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@ -1,27 +1,32 @@
package eu.dnetlib.dhp.schema.oaf.utils;
import com.fasterxml.jackson.databind.DeserializationFeature;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.schema.oaf.Publication;
import eu.dnetlib.dhp.utils.DHPUtils;
import org.apache.commons.io.IOUtils;
import org.junit.jupiter.api.Test;
import java.io.IOException;
import static org.junit.jupiter.api.Assertions.*;
import java.io.IOException;
import org.apache.commons.io.IOUtils;
import org.junit.jupiter.api.Test;
import com.fasterxml.jackson.databind.DeserializationFeature;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.schema.oaf.Publication;
import eu.dnetlib.dhp.utils.DHPUtils;
public class IdentifierFactoryTest {
private static ObjectMapper OBJECT_MAPPER = new ObjectMapper().configure(DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES, false);
private static ObjectMapper OBJECT_MAPPER = new ObjectMapper()
.configure(DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES, false);
@Test
public void testCreateIdentifierForPublication() throws IOException {
verifyIdentifier("publication_doi.json", "50|doi_________::" + DHPUtils.md5("10.1016/j.cmet.2011.03.013"));
verifyIdentifier("publication_pmc.json", "50|pmc_________::" + DHPUtils.md5("21459329"));
verifyIdentifier("publication_urn.json", "50|urn_________::" + DHPUtils.md5("urn:nbn:nl:ui:29-f3ed5f9e-edf6-457e-8848-61b58a4075e2"));
verifyIdentifier(
"publication_urn.json",
"50|urn_________::" + DHPUtils.md5("urn:nbn:nl:ui:29-f3ed5f9e-edf6-457e-8848-61b58a4075e2"));
final String defaultID = "50|DansKnawCris::0829b5191605bdbea36d6502b8c1ce1f";
verifyIdentifier("publication_3.json", defaultID);
@ -39,5 +44,4 @@ public class IdentifierFactoryTest {
assertEquals(expectedID, id);
}
}

1
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/H2020Programme.java
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@ -10,7 +10,6 @@ import java.util.Objects;
* - private String description to store the description of the programme
*/
public class H2020Programme implements Serializable {
private String code;
private String description;

7
dhp-schemas/src/main/java/eu/dnetlib/dhp/schema/oaf/Result.java
View File

@ -1,14 +1,14 @@
package eu.dnetlib.dhp.schema.oaf;
import eu.dnetlib.dhp.schema.common.LicenseComparator;
import java.io.Serializable;
import java.util.ArrayList;
import java.util.Comparator;
import java.util.List;
import java.util.stream.Collectors;
import eu.dnetlib.dhp.schema.common.LicenseComparator;
public class Result extends OafEntity implements Serializable {
private List<Measure> measures;
@ -247,7 +247,8 @@ public class Result extends OafEntity implements Serializable {
instance = mergeLists(instance, r.getInstance());
if (r.getBestaccessright() != null && new LicenseComparator().compare(r.getBestaccessright(), bestaccessright) < 0)
if (r.getBestaccessright() != null
&& new LicenseComparator().compare(r.getBestaccessright(), bestaccessright) < 0)
bestaccessright = r.getBestaccessright();
if (r.getResulttype() != null && compareTrust(this, r) < 0)

6
dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/project/PrepareProgramme.java
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@ -177,14 +177,12 @@ public class PrepareProgramme {
prepareClassification(h2020Programmes);
h2020Programmes.map(csvProgramme -> OBJECT_MAPPER.writeValueAsString(csvProgramme))
h2020Programmes
.map(csvProgramme -> OBJECT_MAPPER.writeValueAsString(csvProgramme))
.saveAsTextFile(outputPath);
}
private static void prepareClassification(JavaRDD<CSVProgramme> h2020Programmes) {
Object[] codedescription = h2020Programmes
.map(value -> new Tuple2<>(value.getCode(), value.getTitle()))

1
dhp-workflows/dhp-aggregation/src/main/java/eu/dnetlib/dhp/actionmanager/project/ProjectSubset.java
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@ -10,7 +10,6 @@ public class ProjectSubset implements Serializable {
private String code;
public String getCode() {
return code;
}