299 lines
19 KiB
Java
299 lines
19 KiB
Java
package eu.eudat.logic.managers;
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import eu.eudat.configurations.dynamicproject.DynamicProjectConfiguration;
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import eu.eudat.configurations.dynamicproject.entities.Property;
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import eu.eudat.data.dao.criteria.DynamicFieldsCriteria;
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import eu.eudat.data.dao.criteria.OrganisationCriteria;
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import eu.eudat.data.dao.criteria.ProjectCriteria;
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import eu.eudat.data.dao.criteria.ResearcherCriteria;
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import eu.eudat.data.dao.entities.*;
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import eu.eudat.data.entities.*;
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import eu.eudat.data.query.items.item.dmp.DataManagementPlanCriteriaRequest;
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import eu.eudat.data.query.items.table.dmp.DataManagementPlanTableRequest;
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import eu.eudat.exceptions.datamanagementplan.DMPWithDatasetsException;
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import eu.eudat.exceptions.security.UnauthorisedException;
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import eu.eudat.logic.builders.entity.UserInfoBuilder;
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import eu.eudat.logic.services.ApiContext;
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import eu.eudat.models.HintedModelFactory;
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import eu.eudat.models.data.dmp.DataManagementPlan;
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import eu.eudat.models.data.dmp.DataManagementPlanNewVersionModel;
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import eu.eudat.models.data.dynamicfields.DynamicFieldWithValue;
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import eu.eudat.models.data.helpermodels.Tuple;
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import eu.eudat.models.data.helpers.common.DataTableData;
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import eu.eudat.models.data.listingmodels.DataManagementPlanListingModel;
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import eu.eudat.models.data.listingmodels.DatasetListingModel;
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import eu.eudat.models.data.security.Principal;
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import eu.eudat.queryable.QueryableList;
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import org.springframework.http.*;
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import org.springframework.scheduling.annotation.Async;
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import org.springframework.web.client.RestTemplate;
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import java.util.*;
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import java.util.concurrent.CompletableFuture;
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import java.util.stream.Collectors;
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public class DataManagementPlanManager {
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public DataTableData<DataManagementPlanListingModel> getPaged(ApiContext apiContext, DataManagementPlanTableRequest dataManagementPlanTableRequest, Principal principal) throws Exception {
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UserInfo userInfo = new UserInfo();
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userInfo.setId(principal.getId());
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QueryableList<DMP> items = apiContext.getOperationsContext().getDatabaseRepository().getDmpDao().getWithCriteria(dataManagementPlanTableRequest.getCriteria()).withHint(HintedModelFactory.getHint(DataManagementPlanListingModel.class));
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QueryableList<DMP> authItems = apiContext.getOperationsContext().getDatabaseRepository().getDmpDao().getAuthenticated(items, userInfo);
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QueryableList<DMP> pagedItems = PaginationManager.applyPaging(authItems, dataManagementPlanTableRequest);
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DataTableData<DataManagementPlanListingModel> dataTable = new DataTableData<>();
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CompletableFuture itemsFuture = pagedItems.withHint(HintedModelFactory.getHint(DataManagementPlanListingModel.class))
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.selectAsync(item -> {
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item.setDataset(
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item.getDataset().stream()
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.filter(dataset -> dataset.getDmp().getCreator().getId().equals(userInfo.getId())
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|| dataset.isPublic()
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|| dataset.getDmp().getUsers().stream()
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.filter(x -> x.getId().equals(userInfo.getId())).collect(Collectors.toList()).size() > 0).collect(Collectors.toSet()));
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return new DataManagementPlanListingModel().fromDataModel(item);
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})
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.whenComplete((resultList, throwable) -> dataTable.setData(resultList));
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CompletableFuture countFuture = authItems.countAsync().whenComplete((count, throwable) -> {
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dataTable.setTotalCount(count);
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});
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CompletableFuture.allOf(itemsFuture, countFuture).join();
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return dataTable;
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}
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public eu.eudat.models.data.dmp.DataManagementPlan getSingle(DMPDao dmpsRepository, String id, Principal principal, DynamicProjectConfiguration dynamicProjectConfiguration) throws InstantiationException, IllegalAccessException {
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DMP dataManagementPlanEntity = dmpsRepository.find(UUID.fromString(id));
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if (dataManagementPlanEntity.getCreator().getId() != principal.getId() && dataManagementPlanEntity.getUsers().stream().filter(userInfo -> userInfo.getId() == principal.getId()).collect(Collectors.toList()).size() == 0)
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throw new UnauthorisedException();
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eu.eudat.models.data.dmp.DataManagementPlan datamanagementPlan = new eu.eudat.models.data.dmp.DataManagementPlan();
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datamanagementPlan.fromDataModel(dataManagementPlanEntity);
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Map dmpProperties = dataManagementPlanEntity.getDmpProperties() != null ? new org.json.JSONObject(dataManagementPlanEntity.getDmpProperties()).toMap() : null;
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datamanagementPlan.setDynamicFields(dynamicProjectConfiguration.getFields().stream().map(item -> {
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DynamicFieldWithValue fieldWithValue = new DynamicFieldWithValue();
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fieldWithValue.setId(item.getId());
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fieldWithValue.setDependencies(item.getDependencies());
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fieldWithValue.setName(item.getName());
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fieldWithValue.setQueryProperty(item.getQueryProperty());
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fieldWithValue.setRequired(item.getRequired());
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return fieldWithValue;
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}).collect(Collectors.toList()));
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if (dmpProperties != null && datamanagementPlan.getDynamicFields() != null)
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datamanagementPlan.getDynamicFields().forEach(item -> {
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Map<String, String> properties = (Map<String, String>) dmpProperties.get(item.getId());
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if (properties != null)
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item.setValue(new Tuple<String, String>(properties.get("id"), properties.get("label")));
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});
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return datamanagementPlan;
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}
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public List<DataManagementPlan> getWithCriteria(DMPDao dmpsRepository, DataManagementPlanCriteriaRequest dataManagementPlanCriteria, Principal principal) throws IllegalAccessException, InstantiationException {
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UserInfo userInfo = new UserInfo();
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userInfo.setId(principal.getId());
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QueryableList<DMP> items = dmpsRepository.getWithCriteria(dataManagementPlanCriteria.getCriteria()).withHint(HintedModelFactory.getHint(DataManagementPlan.class));
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QueryableList<DMP> authenticatedItems = dmpsRepository.getAuthenticated(items, userInfo);
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List<eu.eudat.models.data.dmp.DataManagementPlan> datamanagementPlans = authenticatedItems.select(item -> new DataManagementPlan().fromDataModel(item));
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return datamanagementPlans;
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}
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public List<Tuple<String, String>> getDynamicFields(String id, DynamicProjectConfiguration dynamicProjectConfiguration, DynamicFieldsCriteria criteria) throws IllegalAccessException, InstantiationException {
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List<Tuple<String, String>> result = new LinkedList<>();
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RestTemplate restTemplate = new RestTemplate();
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HttpHeaders headers = new HttpHeaders();
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headers.setAccept(Collections.singletonList(MediaType.APPLICATION_JSON));
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headers.setContentType(MediaType.APPLICATION_JSON);
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HttpEntity<String> entity = new HttpEntity<>("parameters", headers);
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Property property = dynamicProjectConfiguration.getConfiguration().getConfigurationProperties().stream()
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.filter(item -> item.getId().equals(id)).findFirst().orElse(null);
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StringBuilder stringBuilder = new StringBuilder();
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if (criteria.getLike() != null) stringBuilder.append("?search=" + criteria.getLike());
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if (property.getDependencies() != null && !property.getDependencies().isEmpty() && criteria.getDynamicFields() != null && !criteria.getDynamicFields().isEmpty()) {
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property.getDependencies().stream().forEach(item -> {
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DynamicFieldsCriteria.DynamicFieldDependencyCriteria dependencyCriteria = criteria.getDynamicFields().stream().filter(dfield -> dfield.getProperty().equals(item.getId()))
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.findFirst().orElse(null);
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if (dependencyCriteria != null) {
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if (criteria.getLike() != null || property.getDependencies().indexOf(item) > 0)
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stringBuilder.append("&");
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stringBuilder.append(item.getQueryProperty() + "=" + dependencyCriteria.getValue());
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}
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});
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ResponseEntity<ArrayList> response = restTemplate.exchange(property.getSourceUrl() + stringBuilder.toString(), HttpMethod.GET, entity, ArrayList.class);
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response.getBody().forEach(item -> {
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Tuple<String, String> tuple = new Tuple<>();
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tuple.setId((String) (((Map<String, Object>) item).get(property.getExternalFieldId())));
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tuple.setLabel((String) (((Map<String, Object>) item).get(property.getExternalFieldLabel())));
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result.add(tuple);
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});
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} else {
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ResponseEntity<ArrayList> response = restTemplate.exchange(property.getSourceUrl() + stringBuilder.toString(), HttpMethod.GET, entity, ArrayList.class);
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response.getBody().forEach(item -> {
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Tuple<String, String> tuple = new Tuple<>();
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tuple.setId((String) (((Map<String, Object>) item).get(property.getExternalFieldId())));
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tuple.setLabel((String) (((Map<String, Object>) item).get(property.getExternalFieldLabel())));
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result.add(tuple);
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});
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}
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return result;
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}
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public static void createOrUpdate(ApiContext apiContext, DataManagementPlan dataManagementPlan, Principal principal) throws Exception {
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DMP newDmp = dataManagementPlan.toDataModel();
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createOrganisationsIfTheyDontExist(newDmp, apiContext.getOperationsContext().getDatabaseRepository().getOrganisationDao());
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createResearchersIfTheyDontExist(newDmp, apiContext.getOperationsContext().getDatabaseRepository().getResearcherDao());
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UserInfo user = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().find(principal.getId());
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createProjectIfItDoesntExist(newDmp, apiContext.getOperationsContext().getDatabaseRepository().getProjectDao(), user);
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newDmp.setCreator(user);
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newDmp = apiContext.getOperationsContext().getDatabaseRepository().getDmpDao().createOrUpdate(newDmp);
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if (dataManagementPlan.getAssociatedUsers().stream().filter(item -> item.getId() == principal.getId()).collect(Collectors.toList()).size() == 0)
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assignUser(newDmp, user, apiContext);
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}
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public static void assignUser(DMP dmp, UserInfo userInfo, ApiContext apiContext) {
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UserDMP userDMP = new UserDMP();
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userDMP.setDmp(dmp);
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userDMP.setUser(userInfo);
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userDMP.setRole(UserDMP.UserDMPRoles.OWNER.getValue());
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apiContext.getOperationsContext().getDatabaseRepository().getUserDmpDao().createOrUpdate(userDMP);
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}
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public static void newVersion(ApiContext apiContext, UUID uuid, DataManagementPlanNewVersionModel dataManagementPlan, Principal principal) throws Exception {
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DMP oldDmp = apiContext.getOperationsContext().getDatabaseRepository().getDmpDao().find(uuid);
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DMP newDmp = dataManagementPlan.toDataModel();
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createOrganisationsIfTheyDontExist(newDmp, apiContext.getOperationsContext().getDatabaseRepository().getOrganisationDao());
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createResearchersIfTheyDontExist(newDmp, apiContext.getOperationsContext().getDatabaseRepository().getResearcherDao());
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UserInfo user = apiContext.getOperationsContext().getBuilderFactory().getBuilder(UserInfoBuilder.class).id(principal.getId()).build();
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createProjectIfItDoesntExist(newDmp, apiContext.getOperationsContext().getDatabaseRepository().getProjectDao(), user);
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newDmp.setCreator(user);
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newDmp.setGroupId(oldDmp.getGroupId());
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newDmp.setVersion(oldDmp.getVersion() + 1);
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newDmp.setId(null);
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newDmp = apiContext.getOperationsContext().getDatabaseRepository().getDmpDao().createOrUpdate(newDmp);
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copyDatasets(newDmp, apiContext.getOperationsContext().getDatabaseRepository().getDatasetDao());
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}
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public static void clone(ApiContext apiContext, UUID uuid, DataManagementPlanNewVersionModel dataManagementPlan, Principal principal) throws Exception {
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DMP newDmp = dataManagementPlan.toDataModel();
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createOrganisationsIfTheyDontExist(newDmp, apiContext.getOperationsContext().getDatabaseRepository().getOrganisationDao());
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createResearchersIfTheyDontExist(newDmp, apiContext.getOperationsContext().getDatabaseRepository().getResearcherDao());
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UserInfo user = apiContext.getOperationsContext().getBuilderFactory().getBuilder(UserInfoBuilder.class).id(principal.getId()).build();
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createProjectIfItDoesntExist(newDmp, apiContext.getOperationsContext().getDatabaseRepository().getProjectDao(), user);
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newDmp.setCreator(user);
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newDmp.setGroupId(UUID.randomUUID());
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newDmp.setVersion(0);
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newDmp.setId(null);
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newDmp = apiContext.getOperationsContext().getDatabaseRepository().getDmpDao().createOrUpdate(newDmp);
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copyDatasets(newDmp, apiContext.getOperationsContext().getDatabaseRepository().getDatasetDao());
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}
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public static void delete(ApiContext apiContext, UUID uuid) throws DMPWithDatasetsException {
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DMP oldDmp = apiContext.getOperationsContext().getDatabaseRepository().getDmpDao().find(uuid);
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if (oldDmp.getDataset().size() > 0)
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throw new DMPWithDatasetsException("You cannot Remove Datamanagement Plan with Datasets");
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oldDmp.setStatus(DMP.DMPStatus.DELETED.getValue());
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apiContext.getOperationsContext().getDatabaseRepository().getDmpDao().createOrUpdate(oldDmp);
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}
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private static void createResearchersIfTheyDontExist(DMP newDmp, ResearcherDao researcherRepository) {
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if (newDmp.getResearchers() != null && !newDmp.getResearchers().isEmpty()) {
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for (eu.eudat.data.entities.Researcher researcher : newDmp.getResearchers()) {
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ResearcherCriteria criteria = new ResearcherCriteria();
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criteria.setLike(researcher.getReference());
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List<eu.eudat.data.entities.Researcher> entries = researcherRepository.getWithCriteria(criteria).toList();
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if (entries != null && !entries.isEmpty()) researcher.setId(entries.get(0).getId());
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else researcher = researcherRepository.createOrUpdate(researcher);
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}
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}
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}
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private static void createOrganisationsIfTheyDontExist(DMP newDmp, OrganisationDao organisationRepository) {
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if (newDmp.getOrganisations() != null && !newDmp.getOrganisations().isEmpty()) {
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for (eu.eudat.data.entities.Organisation organisation : newDmp.getOrganisations()) {
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OrganisationCriteria criteria = new OrganisationCriteria();
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criteria.setLike(organisation.getReference());
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List<eu.eudat.data.entities.Organisation> entries = organisationRepository.getWithCriteria(criteria).toList();
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if (entries != null && !entries.isEmpty()) organisation.setId(entries.get(0).getId());
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else organisation = organisationRepository.createOrUpdate(organisation);
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}
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}
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}
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private static void createProjectIfItDoesntExist(DMP newDmp, ProjectDao projectDao, UserInfo userInfo) {
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if (newDmp.getProject() != null) {
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Project project = newDmp.getProject();
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ProjectCriteria criteria = new ProjectCriteria();
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criteria.setReference(project.getReference());
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eu.eudat.data.entities.Project projectEntity = projectDao.getWithCriteria(criteria).getSingleOrDefault();
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if (projectEntity != null) project.setId(projectEntity.getId());
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else {
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project.setType(Project.ProjectType.EXTERNAL.getValue());
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projectDao.createOrUpdate(project);
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}
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}
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}
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private static void copyDatasets(DMP newDmp, DatasetDao datasetDao) {
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List<CompletableFuture<Dataset>> futures = new LinkedList<>();
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for (Dataset dataset : newDmp.getDataset()) {
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datasetDao.asQueryable().withHint(HintedModelFactory.getHint(DatasetListingModel.class)).where((builder, root) -> builder.equal(root.get("id"), dataset.getId())).getSingleAsync()
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.thenApplyAsync(entityDataset -> {
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Dataset newDataset = new Dataset();
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newDataset.update(entityDataset);
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newDataset.setDmp(newDmp);
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newDataset.setStatus(Dataset.Status.SAVED.getValue());
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if (newDataset.getDatasetDataRepositories() != null) {
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newDataset.setDatasetDataRepositories(newDataset.getDatasetDataRepositories().stream().map(item -> {
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DataRepository dataRepository = new DataRepository();
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dataRepository.setId(item.getId());
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DatasetDataRepository datasetDataRepository = new DatasetDataRepository();
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datasetDataRepository.setDataRepository(dataRepository);
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datasetDataRepository.setDataset(newDataset);
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return datasetDataRepository;
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}).collect(Collectors.toSet()));
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}
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if (newDataset.getDatasetExternalDatasets() != null) {
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newDataset.setDatasetExternalDatasets(newDataset.getDatasetExternalDatasets().stream().map(item -> {
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ExternalDataset externalDataset = new ExternalDataset();
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externalDataset.setId(item.getId());
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DatasetExternalDataset datasetExternalDataset = new DatasetExternalDataset();
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datasetExternalDataset.setExternalDataset(externalDataset);
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datasetExternalDataset.setDataset(newDataset);
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return datasetExternalDataset;
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}).collect(Collectors.toSet()));
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}
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if (newDataset.getRegistries() != null) {
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newDataset.setRegistries(newDataset.getRegistries().stream().map(item -> {
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Registry registry = new Registry();
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registry.setId(item.getId());
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return registry;
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}).collect(Collectors.toSet()));
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}
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if (newDataset.getServices() != null) {
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newDataset.setServices(newDataset.getServices().stream().map(item -> {
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Service service = new Service();
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service.setId(item.getId());
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DatasetService datasetService = new DatasetService();
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datasetService.setService(service);
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datasetService.setDataset(newDataset);
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return datasetService;
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}).collect(Collectors.toSet()));
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}
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newDataset.setCreated(new Date());
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return newDataset;
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}).thenApplyAsync(item -> {
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futures.add(datasetDao.createOrUpdateAsync(item));
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return futures;
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}).join();
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}
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}
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}
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