1095 lines
57 KiB
Java
1095 lines
57 KiB
Java
package eu.eudat.service.dmp;
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import com.fasterxml.jackson.core.JsonProcessingException;
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import eu.eudat.authorization.AuthorizationFlags;
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import eu.eudat.authorization.Permission;
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import eu.eudat.authorization.authorizationcontentresolver.AuthorizationContentResolver;
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import eu.eudat.commons.JsonHandlingService;
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import eu.eudat.commons.XmlHandlingService;
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import eu.eudat.commons.enums.*;
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import eu.eudat.commons.enums.notification.NotificationContactType;
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import eu.eudat.commons.scope.user.UserScope;
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import eu.eudat.commons.types.actionconfirmation.DmpInvitationEntity;
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import eu.eudat.commons.types.dmp.DmpBlueprintValueEntity;
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import eu.eudat.commons.types.dmp.DmpContactEntity;
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import eu.eudat.commons.types.dmp.DmpPropertiesEntity;
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import eu.eudat.commons.types.dmpblueprint.ReferenceTypeFieldEntity;
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import eu.eudat.commons.types.dmpreference.DmpReferenceDataEntity;
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import eu.eudat.commons.types.notification.*;
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import eu.eudat.commons.types.reference.DefinitionEntity;
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import eu.eudat.commons.types.reference.FieldEntity;
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import eu.eudat.configurations.notification.NotificationProperties;
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import eu.eudat.convention.ConventionService;
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import eu.eudat.data.*;
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import eu.eudat.errorcode.ErrorThesaurusProperties;
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import eu.eudat.event.DmpTouchedEvent;
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import eu.eudat.event.EventBroker;
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import eu.eudat.integrationevent.outbox.annotationentitytouch.AnnotationEntityTouchedIntegrationEventHandler;
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import eu.eudat.integrationevent.outbox.dmptouched.DmpTouchedIntegrationEventHandler;
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import eu.eudat.integrationevent.outbox.notification.NotifyIntegrationEvent;
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import eu.eudat.integrationevent.outbox.notification.NotifyIntegrationEventHandler;
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import eu.eudat.model.*;
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import eu.eudat.model.builder.DmpBuilder;
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import eu.eudat.model.builder.DmpUserBuilder;
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import eu.eudat.model.deleter.*;
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import eu.eudat.model.file.FileEnvelope;
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import eu.eudat.model.persist.*;
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import eu.eudat.model.persist.actionconfirmation.DmpInvitationPersist;
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import eu.eudat.model.persist.dmpproperties.DmpBlueprintValuePersist;
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import eu.eudat.model.persist.dmpproperties.DmpContactPersist;
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import eu.eudat.model.persist.dmpproperties.DmpPropertiesPersist;
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import eu.eudat.model.persist.dmpreference.DmpReferenceDataPersist;
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import eu.eudat.model.persist.referencedefinition.DefinitionPersist;
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import eu.eudat.model.persist.referencedefinition.FieldPersist;
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import eu.eudat.query.*;
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import eu.eudat.service.actionconfirmation.ActionConfirmationService;
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import eu.eudat.service.description.DescriptionService;
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import eu.eudat.service.elastic.ElasticService;
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import eu.eudat.service.transformer.FileTransformerService;
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import gr.cite.commons.web.authz.service.AuthorizationService;
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import gr.cite.tools.data.builder.BuilderFactory;
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import gr.cite.tools.data.deleter.DeleterFactory;
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import gr.cite.tools.data.query.Ordering;
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import gr.cite.tools.data.query.QueryFactory;
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import gr.cite.tools.exception.MyApplicationException;
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import gr.cite.tools.exception.MyForbiddenException;
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import gr.cite.tools.exception.MyNotFoundException;
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import gr.cite.tools.exception.MyValidationException;
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import gr.cite.tools.fieldset.BaseFieldSet;
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import gr.cite.tools.fieldset.FieldSet;
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import gr.cite.tools.logging.LoggerService;
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import gr.cite.tools.logging.MapLogEntry;
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import gr.cite.tools.validation.ValidatorFactory;
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import jakarta.persistence.EntityManager;
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import jakarta.xml.bind.JAXBException;
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import org.jetbrains.annotations.NotNull;
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import org.slf4j.LoggerFactory;
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import org.springframework.beans.factory.annotation.Autowired;
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import org.springframework.context.MessageSource;
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import org.springframework.context.i18n.LocaleContextHolder;
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import org.springframework.http.HttpHeaders;
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import org.springframework.http.HttpStatus;
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import org.springframework.http.MediaType;
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import org.springframework.http.ResponseEntity;
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import org.springframework.stereotype.Service;
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import javax.management.InvalidApplicationException;
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import java.io.IOException;
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import java.time.Instant;
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import java.util.*;
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import java.util.stream.Collectors;
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@Service
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public class DmpServiceImpl implements DmpService {
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private static final LoggerService logger = new LoggerService(LoggerFactory.getLogger(DmpServiceImpl.class));
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private final EntityManager entityManager;
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private final AuthorizationService authorizationService;
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private final DeleterFactory deleterFactory;
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private final BuilderFactory builderFactory;
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private final QueryFactory queryFactory;
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private final ConventionService conventionService;
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private final ErrorThesaurusProperties errors;
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private final MessageSource messageSource;
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private final XmlHandlingService xmlHandlingService;
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private final JsonHandlingService jsonHandlingService;
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private final UserScope userScope;
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private final EventBroker eventBroker;
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private final DescriptionService descriptionService;
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private final FileTransformerService fileTransformerService;
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private final NotifyIntegrationEventHandler eventHandler;
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private final NotificationProperties notificationProperties;
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private final ActionConfirmationService actionConfirmationService;
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private final gr.cite.tools.validation.ValidatorFactory validatorFactory;
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private final ElasticService elasticService;
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private final DmpTouchedIntegrationEventHandler dmpTouchedIntegrationEventHandler;
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private final AnnotationEntityTouchedIntegrationEventHandler annotationEntityTouchedIntegrationEventHandler;
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private final AuthorizationContentResolver authorizationContentResolver;
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@Autowired
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public DmpServiceImpl(
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EntityManager entityManager,
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AuthorizationService authorizationService,
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DeleterFactory deleterFactory,
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BuilderFactory builderFactory,
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QueryFactory queryFactory,
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ConventionService conventionService,
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ErrorThesaurusProperties errors,
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MessageSource messageSource,
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XmlHandlingService xmlHandlingService,
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JsonHandlingService jsonHandlingService,
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UserScope userScope,
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EventBroker eventBroker,
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DescriptionService descriptionService,
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NotifyIntegrationEventHandler eventHandler,
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NotificationProperties notificationProperties,
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ActionConfirmationService actionConfirmationService,
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FileTransformerService fileTransformerService,
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ValidatorFactory validatorFactory,
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ElasticService elasticService,
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DmpTouchedIntegrationEventHandler dmpTouchedIntegrationEventHandler,
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AnnotationEntityTouchedIntegrationEventHandler annotationEntityTouchedIntegrationEventHandler, AuthorizationContentResolver authorizationContentResolver) {
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this.entityManager = entityManager;
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this.authorizationService = authorizationService;
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this.deleterFactory = deleterFactory;
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this.builderFactory = builderFactory;
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this.queryFactory = queryFactory;
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this.conventionService = conventionService;
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this.errors = errors;
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this.messageSource = messageSource;
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this.xmlHandlingService = xmlHandlingService;
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this.jsonHandlingService = jsonHandlingService;
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this.userScope = userScope;
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this.eventBroker = eventBroker;
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this.descriptionService = descriptionService;
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this.fileTransformerService = fileTransformerService;
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this.eventHandler = eventHandler;
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this.notificationProperties = notificationProperties;
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this.actionConfirmationService = actionConfirmationService;
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this.validatorFactory = validatorFactory;
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this.elasticService = elasticService;
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this.dmpTouchedIntegrationEventHandler = dmpTouchedIntegrationEventHandler;
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this.annotationEntityTouchedIntegrationEventHandler = annotationEntityTouchedIntegrationEventHandler;
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this.authorizationContentResolver = authorizationContentResolver;
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}
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public Dmp persist(DmpPersist model, FieldSet fields) throws MyForbiddenException, MyValidationException, MyApplicationException, MyNotFoundException, InvalidApplicationException, JAXBException, IOException {
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Boolean isUpdate = this.conventionService.isValidGuid(model.getId());
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if (isUpdate) this.authorizationService.authorizeAtLeastOneForce(List.of(this.authorizationContentResolver.dmpAffiliation(model.getId())), Permission.EditDmp);
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else this.authorizationService.authorizeForce(Permission.NewDmp);
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DmpEntity data = this.patchAndSave(model);
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DmpBlueprintEntity blueprintEntity = this.entityManager.find(DmpBlueprintEntity.class, data.getBlueprintId());
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if (blueprintEntity == null) throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{data.getBlueprintId(), DmpBlueprint.class.getSimpleName()}, LocaleContextHolder.getLocale()));
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eu.eudat.commons.types.dmpblueprint.DefinitionEntity definition = this.xmlHandlingService.fromXmlSafe(eu.eudat.commons.types.dmpblueprint.DefinitionEntity.class, blueprintEntity.getDefinition());
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if (definition == null) throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{data.getBlueprintId(), eu.eudat.commons.types.dmpblueprint.DefinitionEntity.class.getSimpleName()}, LocaleContextHolder.getLocale()));
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this.patchAndSaveReferences(this.buildDmpReferencePersists(model.getProperties()), data.getId(), definition);
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this.patchAndSaveTemplates(data.getId(), model.getDescriptionTemplates());
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if (!isUpdate && userScope.isSet()) {
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this.addOwner(data);
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if (model.getUsers() == null) model.setUsers(new ArrayList<>());
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if (model.getUsers().stream().noneMatch(x-> x.getUser() != null && x.getUser().equals(this.userScope.getUserIdSafe()) && DmpUserRole.Owner.equals(x.getRole()))) model.getUsers().add(this.createOwnerPersist());
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}
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this.eventBroker.emit(new DmpTouchedEvent(data.getId()));
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this.dmpTouchedIntegrationEventHandler.handle(DmpTouchedIntegrationEventHandler.buildEventFromPersistModel(model));
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this.annotationEntityTouchedIntegrationEventHandler.handle(AnnotationEntityTouchedIntegrationEventHandler.buildEventFromPersistModel(model));
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this.sendNotification(data);
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this.assignUsers(data.getId(), this.inviteUserOrAssignUsers(data.getId(), model.getUsers(), false), null, false);
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this.elasticService.persistDmp(data);
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return this.builderFactory.builder(DmpBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(BaseFieldSet.build(fields, Dmp._id, Dmp._hash), data);
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}
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private DmpUserPersist createOwnerPersist() {
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DmpUserPersist persist = new DmpUserPersist();
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persist.setRole(DmpUserRole.Owner);
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persist.setUser(userScope.getUserIdSafe());
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return persist;
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}
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private void addOwner(DmpEntity dmpEntity) throws InvalidApplicationException {
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DmpUserEntity data = new DmpUserEntity();
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data.setId(UUID.randomUUID());
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data.setIsActive(IsActive.Active);
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data.setCreatedAt(Instant.now());
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data.setUpdatedAt(Instant.now());
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data.setRole(DmpUserRole.Owner);
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data.setUserId(userScope.getUserId());
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data.setDmpId(dmpEntity.getId());
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this.entityManager.persist(data);
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}
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private void sendNotification(DmpEntity dmp) throws InvalidApplicationException {
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List<DmpUserEntity> existingUsers = this.queryFactory.query(DmpUserQuery.class)
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.dmpIds(dmp.getId())
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.isActives(IsActive.Active)
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.collect();
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if (existingUsers == null || existingUsers.size() <= 1){
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return;
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}
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for (DmpUserEntity dmpUser : existingUsers) {
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if (!dmpUser.getUserId().equals(this.userScope.getUserIdSafe())){
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UserEntity user = this.queryFactory.query(UserQuery.class).ids(dmpUser.getUserId()).first();
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if (user != null){
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this.createDmpNotificationEvent(dmp, user, NotificationContactType.EMAIL);
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this.createDmpNotificationEvent(dmp, user, NotificationContactType.IN_APP);
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}
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}
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}
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}
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private void createDmpNotificationEvent(DmpEntity dmp, UserEntity user, NotificationContactType type) throws InvalidApplicationException {
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NotifyIntegrationEvent event = new NotifyIntegrationEvent();
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event.setUserId(this.userScope.getUserId());
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UserContactInfoQuery query = this.queryFactory.query(UserContactInfoQuery.class).userIds(user.getId());
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query.setOrder(new Ordering().addAscending(UserContactInfo._ordinal));
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List<ContactPair> contactPairs = new ArrayList<>();
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contactPairs.add(new ContactPair(ContactInfoType.Email, query.first().getValue()));
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NotificationContactData contactData = new NotificationContactData(contactPairs, null, null);
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event.setContactHint(jsonHandlingService.toJsonSafe(contactData));
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event.setContactTypeHint(type);
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this.applyNotificationType(dmp.getStatus(), event);
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NotificationFieldData data = new NotificationFieldData();
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List<FieldInfo> fieldInfoList = new ArrayList<>();
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fieldInfoList.add(new FieldInfo("{recipient}", DataType.String, user.getName()));
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fieldInfoList.add(new FieldInfo("{reasonName}", DataType.String, this.queryFactory.query(UserQuery.class).ids(this.userScope.getUserId()).first().getName()));
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fieldInfoList.add(new FieldInfo("{name}", DataType.String, dmp.getLabel()));
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fieldInfoList.add(new FieldInfo("{id}", DataType.String, dmp.getId().toString()));
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data.setFields(fieldInfoList);
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event.setData(jsonHandlingService.toJsonSafe(data));
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eventHandler.handle(event);
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}
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private void applyNotificationType(DmpStatus status, NotifyIntegrationEvent event) {
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switch (status) {
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case Draft:
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event.setNotificationType(notificationProperties.getDmpModifiedType());
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break;
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case Finalized:
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event.setNotificationType(notificationProperties.getDmpFinalisedType());
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break;
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default:
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throw new MyApplicationException("Unsupported Dmp Status.");
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}
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}
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public void deleteAndSave(UUID id) throws MyForbiddenException, InvalidApplicationException, IOException {
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logger.debug("deleting dmp: {}", id);
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this.authorizationService.authorizeAtLeastOneForce(List.of(this.authorizationContentResolver.dmpAffiliation(id)), Permission.DeleteDmp);
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DmpEntity data = this.entityManager.find(DmpEntity.class, id);
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if (data == null) throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{id, Dmp.class.getSimpleName()}, LocaleContextHolder.getLocale()));
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EntityDoiQuery entityDoiQuery = this.queryFactory.query(EntityDoiQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).types(EntityType.DMP).entityIds(data.getId());
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if (entityDoiQuery.count() > 0) throw new MyApplicationException("DMP is deposited can not deleted");
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DmpEntity previousFinalized = null;
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if (data.getVersionStatus().equals(DmpVersionStatus.Current)){
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DmpQuery dmpQuery = this.queryFactory.query(DmpQuery.class)
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.statuses(DmpStatus.Finalized)
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.excludedIds(data.getId())
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.isActive(IsActive.Active)
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.groupIds(data.getGroupId());
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dmpQuery.setOrder(new Ordering().addDescending(Dmp._version));
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previousFinalized = dmpQuery.first();
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if (previousFinalized != null){
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previousFinalized.setVersionStatus(DmpVersionStatus.Current);
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this.entityManager.merge(previousFinalized);
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}
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data.setVersionStatus(DmpVersionStatus.NotFinalized);
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this.entityManager.merge(data);
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this.entityManager.flush();
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}
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this.deleterFactory.deleter(DmpDeleter.class).deleteAndSaveByIds(List.of(id), false);
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if (previousFinalized != null) this.elasticService.persistDmp(previousFinalized);
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}
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@Override
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public Dmp createNewVersion(NewVersionDmpPersist model, FieldSet fields) throws MyForbiddenException, MyValidationException, MyApplicationException, MyNotFoundException, InvalidApplicationException, IOException {
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logger.debug(new MapLogEntry("persisting data bew version").And("model", model).And("fields", fields));
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this.authorizationService.authorizeAtLeastOneForce(List.of(this.authorizationContentResolver.dmpAffiliation( model.getId())), Permission.CreateNewVersionDmp);
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DmpEntity oldDmpEntity = this.entityManager.find(DmpEntity.class, model.getId());
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if (oldDmpEntity == null) throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{model.getId(), Dmp.class.getSimpleName()}, LocaleContextHolder.getLocale()));
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if (!this.conventionService.hashValue(oldDmpEntity.getUpdatedAt()).equals(model.getHash())) throw new MyValidationException(this.errors.getHashConflict().getCode(), this.errors.getHashConflict().getMessage());
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List<DmpEntity> latestVersionDmps = this.queryFactory.query(DmpQuery.class)
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.groupIds(oldDmpEntity.getGroupId())
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.isActive(IsActive.Active)
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.versionStatuses(DmpVersionStatus.Current)
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.collect();
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if (latestVersionDmps.isEmpty()) throw new MyValidationException("Previous dmp not found");
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if (latestVersionDmps.size() > 1) throw new MyValidationException("Multiple previous dmps found");
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if (!latestVersionDmps.getFirst().getVersion().equals(oldDmpEntity.getVersion())){
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throw new MyValidationException(this.errors.getDmpNewVersionConflict().getCode(), this.errors.getDmpNewVersionConflict().getMessage());
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}
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Long notFinalizedCount = this.queryFactory.query(DmpQuery.class)
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.versionStatuses(DmpVersionStatus.NotFinalized)
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.groupIds(oldDmpEntity.getGroupId())
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.isActive(IsActive.Active)
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.count();
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if (notFinalizedCount > 0) throw new MyValidationException("Already created draft for this template");
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DmpEntity newDmp = new DmpEntity();
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newDmp.setId(UUID.randomUUID());
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newDmp.setIsActive(IsActive.Active);
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newDmp.setCreatedAt(Instant.now());
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newDmp.setUpdatedAt(Instant.now());
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newDmp.setGroupId(oldDmpEntity.getGroupId());
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newDmp.setVersionStatus(DmpVersionStatus.NotFinalized);
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newDmp.setVersion((short)(oldDmpEntity.getVersion() + 1));
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newDmp.setDescription(model.getDescription());
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newDmp.setLabel(model.getLabel());
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newDmp.setLanguage(oldDmpEntity.getLanguage());
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newDmp.setStatus(DmpStatus.Draft);
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newDmp.setProperties(oldDmpEntity.getProperties());
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newDmp.setBlueprintId(model.getBlueprintId());
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newDmp.setCreatorId(this.userScope.getUserId());
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this.entityManager.persist(newDmp);
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List<DmpUserEntity> dmpUsers = this.queryFactory.query(DmpUserQuery.class)
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.dmpIds(model.getId())
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.isActives(IsActive.Active)
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.collect();
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List<DmpReferenceEntity> dmpReferences = this.queryFactory.query(DmpReferenceQuery.class)
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.dmpIds(model.getId())
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.isActives(IsActive.Active)
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.collect();
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List<DmpDescriptionTemplateEntity> dmpDescriptionTemplates = this.queryFactory.query(DmpDescriptionTemplateQuery.class)
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.dmpIds(model.getId())
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.isActive(IsActive.Active)
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.collect();
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for (DmpUserEntity dmpUser : dmpUsers) {
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DmpUserEntity newUser = new DmpUserEntity();
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newUser.setId(UUID.randomUUID());
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newUser.setDmpId(newDmp.getId());
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newUser.setUserId(dmpUser.getUserId());
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newUser.setRole(dmpUser.getRole());
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newUser.setCreatedAt(Instant.now());
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newUser.setUpdatedAt(Instant.now());
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newUser.setIsActive(IsActive.Active);
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this.entityManager.persist(newUser);
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}
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for (DmpReferenceEntity dmpReference : dmpReferences) {
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DmpReferenceEntity newReference = new DmpReferenceEntity();
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newReference.setId(UUID.randomUUID());
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newReference.setDmpId(newDmp.getId());
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newReference.setReferenceId(dmpReference.getReferenceId());
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newReference.setData(dmpReference.getData());
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newReference.setCreatedAt(Instant.now());
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newReference.setUpdatedAt(Instant.now());
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newReference.setIsActive(IsActive.Active);
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this.entityManager.persist(newReference);
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}
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for (DmpDescriptionTemplateEntity dmpDescriptionTemplate : dmpDescriptionTemplates) {
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DmpDescriptionTemplateEntity newTemplate = new DmpDescriptionTemplateEntity();
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newTemplate.setId(UUID.randomUUID());
|
|
newTemplate.setDmpId(newDmp.getId());
|
|
newTemplate.setDescriptionTemplateGroupId(dmpDescriptionTemplate.getDescriptionTemplateGroupId());
|
|
newTemplate.setSectionId(dmpDescriptionTemplate.getSectionId());
|
|
newTemplate.setCreatedAt(Instant.now());
|
|
newTemplate.setUpdatedAt(Instant.now());
|
|
newTemplate.setIsActive(IsActive.Active);
|
|
|
|
this.entityManager.persist(newTemplate);
|
|
}
|
|
|
|
for (UUID descriptionId : model.getDescriptions()) {
|
|
this.descriptionService.clone(newDmp.getId(), descriptionId);
|
|
}
|
|
|
|
this.entityManager.flush();
|
|
|
|
this.updateVersionStatusAndSave(newDmp, DmpStatus.Draft, newDmp.getStatus());
|
|
|
|
this.entityManager.flush();
|
|
|
|
this.elasticService.persistDmp(oldDmpEntity);
|
|
this.elasticService.persistDmp(newDmp);
|
|
|
|
return this.builderFactory.builder(DmpBuilder.class).build(BaseFieldSet.build(fields, Dmp._id), newDmp);
|
|
}
|
|
|
|
private void updateVersionStatusAndSave(DmpEntity data, DmpStatus previousStatus, DmpStatus newStatus) {
|
|
if (previousStatus.equals(newStatus))
|
|
return;
|
|
if (previousStatus.equals(DmpStatus.Finalized) && newStatus.equals(DmpStatus.Draft)){
|
|
boolean alreadyCreatedNewVersion = this.queryFactory.query(DmpQuery.class)
|
|
.versionStatuses(DmpVersionStatus.NotFinalized, DmpVersionStatus.Current)
|
|
.excludedIds(data.getId())
|
|
.isActive(IsActive.Active)
|
|
.groupIds(data.getGroupId())
|
|
.count() > 0;
|
|
if (alreadyCreatedNewVersion) throw new MyValidationException("Already new version is created");
|
|
|
|
data.setVersionStatus(DmpVersionStatus.NotFinalized);
|
|
this.entityManager.merge(data);
|
|
}
|
|
|
|
if (newStatus.equals(DmpStatus.Finalized)) {
|
|
List<DmpEntity> latestVersionDmps = this.queryFactory.query(DmpQuery.class)
|
|
.versionStatuses(DmpVersionStatus.Current).isActive(IsActive.Active).groupIds(data.getGroupId()).collect();
|
|
if (latestVersionDmps.size() > 1)
|
|
throw new MyValidationException("Multiple previous template found");
|
|
DmpEntity oldDmpEntity = latestVersionDmps.stream().findFirst().orElse(null);
|
|
|
|
data.setVersionStatus(DmpVersionStatus.Current);
|
|
|
|
if (oldDmpEntity != null) {
|
|
data.setVersion((short) (oldDmpEntity.getVersion() + 1));
|
|
|
|
oldDmpEntity.setVersionStatus(DmpVersionStatus.Previous);
|
|
this.entityManager.merge(oldDmpEntity);
|
|
} else {
|
|
data.setVersion((short) 1);
|
|
}
|
|
}
|
|
}
|
|
|
|
@Override
|
|
public Dmp buildClone(CloneDmpPersist model, FieldSet fields) throws MyForbiddenException, MyValidationException, MyApplicationException, MyNotFoundException, IOException, InvalidApplicationException {
|
|
this.authorizationService.authorizeAtLeastOneForce(List.of(this.authorizationContentResolver.dmpAffiliation( model.getId())), Permission.CloneDmp);
|
|
|
|
DmpEntity existingDmpEntity = this.queryFactory.query(DmpQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).ids(model.getId()).firstAs(fields);
|
|
if (!this.conventionService.isValidGuid(model.getId()) || existingDmpEntity == null)
|
|
throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{model.getId(), Dmp.class.getSimpleName()}, LocaleContextHolder.getLocale()));
|
|
|
|
DmpEntity newDmp = new DmpEntity();
|
|
newDmp.setId(UUID.randomUUID());
|
|
newDmp.setIsActive(IsActive.Active);
|
|
newDmp.setCreatedAt(Instant.now());
|
|
newDmp.setUpdatedAt(Instant.now());
|
|
newDmp.setGroupId(UUID.randomUUID());
|
|
newDmp.setVersion((short) 1);
|
|
newDmp.setVersionStatus(DmpVersionStatus.NotFinalized);
|
|
newDmp.setDescription(model.getDescription());
|
|
newDmp.setLabel(model.getLabel());
|
|
newDmp.setLanguage(existingDmpEntity.getLanguage());
|
|
newDmp.setStatus(DmpStatus.Draft);
|
|
newDmp.setProperties(existingDmpEntity.getProperties());
|
|
newDmp.setBlueprintId(existingDmpEntity.getBlueprintId());
|
|
newDmp.setAccessType(existingDmpEntity.getAccessType());
|
|
newDmp.setCreatorId(this.userScope.getUserId());
|
|
|
|
this.entityManager.persist(newDmp);
|
|
|
|
List<DmpUserEntity> dmpUsers = this.queryFactory.query(DmpUserQuery.class)
|
|
.dmpIds(model.getId())
|
|
.isActives(IsActive.Active)
|
|
.collect();
|
|
List<DmpReferenceEntity> dmpReferences = this.queryFactory.query(DmpReferenceQuery.class)
|
|
.dmpIds(model.getId())
|
|
.isActives(IsActive.Active)
|
|
.collect();
|
|
List<DmpDescriptionTemplateEntity> dmpDescriptionTemplates = this.queryFactory.query(DmpDescriptionTemplateQuery.class)
|
|
.dmpIds(model.getId())
|
|
.isActive(IsActive.Active)
|
|
.collect();
|
|
|
|
for (DmpUserEntity dmpUser : dmpUsers) {
|
|
DmpUserEntity newUser = new DmpUserEntity();
|
|
newUser.setId(UUID.randomUUID());
|
|
newUser.setDmpId(newDmp.getId());
|
|
newUser.setUserId(dmpUser.getUserId());
|
|
newUser.setRole(dmpUser.getRole());
|
|
newUser.setCreatedAt(Instant.now());
|
|
newUser.setUpdatedAt(Instant.now());
|
|
newUser.setIsActive(IsActive.Active);
|
|
|
|
this.entityManager.persist(newUser);
|
|
}
|
|
|
|
for (DmpReferenceEntity dmpReference : dmpReferences) {
|
|
DmpReferenceEntity newReference = new DmpReferenceEntity();
|
|
newReference.setId(UUID.randomUUID());
|
|
newReference.setDmpId(newDmp.getId());
|
|
newReference.setReferenceId(dmpReference.getReferenceId());
|
|
newReference.setData(dmpReference.getData());
|
|
newReference.setCreatedAt(Instant.now());
|
|
newReference.setUpdatedAt(Instant.now());
|
|
newReference.setIsActive(IsActive.Active);
|
|
|
|
this.entityManager.persist(newReference);
|
|
}
|
|
|
|
for (DmpDescriptionTemplateEntity dmpDescriptionTemplate : dmpDescriptionTemplates) {
|
|
DmpDescriptionTemplateEntity newTemplate = new DmpDescriptionTemplateEntity();
|
|
newTemplate.setId(UUID.randomUUID());
|
|
newTemplate.setDmpId(newDmp.getId());
|
|
newTemplate.setDescriptionTemplateGroupId(dmpDescriptionTemplate.getDescriptionTemplateGroupId());
|
|
newTemplate.setSectionId(dmpDescriptionTemplate.getSectionId());
|
|
newTemplate.setCreatedAt(Instant.now());
|
|
newTemplate.setUpdatedAt(Instant.now());
|
|
newTemplate.setIsActive(IsActive.Active);
|
|
|
|
this.entityManager.persist(newTemplate);
|
|
}
|
|
|
|
this.entityManager.flush();
|
|
|
|
|
|
this.elasticService.persistDmp(newDmp);
|
|
|
|
DmpEntity resultingDmpEntity = this.queryFactory.query(DmpQuery.class).ids(newDmp.getId()).firstAs(fields);
|
|
return this.builderFactory.builder(DmpBuilder.class).build(fields, resultingDmpEntity);
|
|
}
|
|
|
|
@Override
|
|
public List<DmpUser> assignUsers(UUID dmpId, List<DmpUserPersist> model, FieldSet fieldSet, boolean disableDelete) throws InvalidApplicationException, IOException {
|
|
this.authorizationService.authorizeAtLeastOneForce(List.of(this.authorizationContentResolver.dmpAffiliation(dmpId)), Permission.AssignDmpUsers);
|
|
|
|
if (!disableDelete && (model == null || model.stream().noneMatch(x-> x.getUser() != null && DmpUserRole.Owner.equals(x.getRole())))) throw new MyApplicationException("At least one owner required");
|
|
|
|
DmpEntity dmpEntity = this.entityManager.find(DmpEntity.class, dmpId);
|
|
if (dmpEntity == null) throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{dmpId, Dmp.class.getSimpleName()}, LocaleContextHolder.getLocale()));
|
|
|
|
List<DmpUserEntity> existingUsers = this.queryFactory.query(DmpUserQuery.class)
|
|
.dmpIds(dmpId)
|
|
.isActives(IsActive.Active)
|
|
.collect();
|
|
|
|
List<UUID> updatedCreatedIds = new ArrayList<>();
|
|
for (DmpUserPersist dmpUser : model) {
|
|
DmpUserEntity dmpUserEntity = existingUsers.stream().filter(x-> x.getDmpId().equals(dmpId) && x.getUserId().equals(dmpUser.getUser()) && x.getRole().equals(dmpUser.getRole()) && Objects.equals(dmpUser.getSectionId(), x.getSectionId())).findFirst().orElse(null);
|
|
if (dmpUserEntity == null){
|
|
dmpUserEntity = new DmpUserEntity();
|
|
dmpUserEntity.setId(UUID.randomUUID());
|
|
dmpUserEntity.setDmpId(dmpId);
|
|
dmpUserEntity.setUserId(dmpUser.getUser());
|
|
dmpUserEntity.setRole(dmpUser.getRole());
|
|
dmpUserEntity.setSectionId(dmpUser.getSectionId());
|
|
dmpUserEntity.setCreatedAt(Instant.now());
|
|
dmpUserEntity.setUpdatedAt(Instant.now());
|
|
dmpUserEntity.setIsActive(IsActive.Active);
|
|
this.entityManager.persist(dmpUserEntity);
|
|
}
|
|
updatedCreatedIds.add(dmpUserEntity.getId());
|
|
}
|
|
|
|
List<DmpUserEntity> toDelete = existingUsers.stream().filter(x-> updatedCreatedIds.stream().noneMatch(y-> y.equals(x.getId()))).collect(Collectors.toList());
|
|
if (!toDelete.isEmpty() && !disableDelete) this.deleterFactory.deleter(DmpUserDeleter.class).delete(toDelete);
|
|
|
|
this.entityManager.flush();
|
|
|
|
List<DmpUserEntity> persisted = this.queryFactory.query(DmpUserQuery.class)
|
|
.dmpIds(dmpId)
|
|
.isActives(IsActive.Active)
|
|
.collect();
|
|
|
|
this.elasticService.persistDmp(dmpEntity);
|
|
return this.builderFactory.builder(DmpUserBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(BaseFieldSet.build(fieldSet, DmpUser._id, DmpUser._hash), persisted);
|
|
}
|
|
|
|
@Override
|
|
public Dmp removeUser(DmpUserRemovePersist model, FieldSet fields) throws InvalidApplicationException, IOException {
|
|
this.authorizationService.authorizeAtLeastOneForce(List.of(this.authorizationContentResolver.dmpAffiliation(model.getDmpId())), Permission.AssignDmpUsers);
|
|
DmpEntity data = this.entityManager.find(DmpEntity.class, model.getDmpId());
|
|
if (data == null) throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{model.getId(), Dmp.class.getSimpleName()}, LocaleContextHolder.getLocale()));
|
|
|
|
List<DmpUserEntity> existingUsers = this.queryFactory.query(DmpUserQuery.class)
|
|
.dmpIds(model.getDmpId()).ids(model.getId()).userRoles(model.getRole())
|
|
.collect();
|
|
|
|
if (!existingUsers.isEmpty()) this.deleterFactory.deleter(DmpUserDeleter.class).delete(existingUsers);
|
|
|
|
this.entityManager.flush();
|
|
|
|
DmpEntity dmpEntity = this.entityManager.find(DmpEntity.class, model.getDmpId());
|
|
if (dmpEntity == null) throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{model.getDmpId(), Dmp.class.getSimpleName()}, LocaleContextHolder.getLocale()));
|
|
this.elasticService.persistDmp(dmpEntity);
|
|
|
|
return this.builderFactory.builder(DmpBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(BaseFieldSet.build(fields, Dmp._id, Dmp._hash), data);
|
|
}
|
|
|
|
@Override
|
|
public ResponseEntity<byte[]> export(UUID id, String transformerId, String exportType) throws InvalidApplicationException, IOException {
|
|
HttpHeaders headers = new HttpHeaders();
|
|
|
|
FileEnvelope fileEnvelope = this.fileTransformerService.exportDmp(id, transformerId, exportType);
|
|
headers.add("Content-Disposition", "attachment;filename=" + fileEnvelope.getFilename());
|
|
byte[] data = fileEnvelope.getFile();
|
|
headers.setContentType(MediaType.APPLICATION_OCTET_STREAM);
|
|
return new ResponseEntity<>(data, headers, HttpStatus.OK);
|
|
}
|
|
|
|
private DmpEntity patchAndSave(DmpPersist model) throws JsonProcessingException, InvalidApplicationException {
|
|
Boolean isUpdate = this.conventionService.isValidGuid(model.getId());
|
|
|
|
DmpEntity data;
|
|
if (isUpdate) {
|
|
data = this.entityManager.find(DmpEntity.class, model.getId());
|
|
if (data == null) throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{model.getId(), Dmp.class.getSimpleName()}, LocaleContextHolder.getLocale()));
|
|
if (!this.conventionService.hashValue(data.getUpdatedAt()).equals(model.getHash())) throw new MyValidationException(this.errors.getHashConflict().getCode(), this.errors.getHashConflict().getMessage());
|
|
if (model.getStatus() != null && model.getStatus() == DmpStatus.Finalized && data.getStatus() != DmpStatus.Finalized) {
|
|
this.authorizationService.authorizeAtLeastOneForce(List.of(this.authorizationContentResolver.dmpAffiliation(model.getId())), Permission.FinalizeDmp);
|
|
data.setStatus(model.getStatus());
|
|
data.setFinalizedAt(Instant.now());
|
|
}
|
|
} else {
|
|
data = new DmpEntity();
|
|
data.setId(UUID.randomUUID());
|
|
data.setGroupId(UUID.randomUUID());
|
|
data.setVersion((short) 1);
|
|
data.setStatus(DmpStatus.Draft);
|
|
data.setVersionStatus(DmpVersionStatus.NotFinalized);
|
|
data.setCreatorId(userScope.getUserId());
|
|
data.setBlueprintId(model.getBlueprint());
|
|
data.setIsActive(IsActive.Active);
|
|
data.setCreatedAt(Instant.now());
|
|
}
|
|
DmpStatus previousStatus = data.getStatus();
|
|
|
|
data.setLabel(model.getLabel());
|
|
data.setLanguage(model.getLanguage());
|
|
data.setProperties(this.jsonHandlingService.toJson(this.buildDmpPropertiesEntity(model.getProperties())));
|
|
data.setDescription(model.getDescription());
|
|
data.setAccessType(model.getAccessType());
|
|
data.setUpdatedAt(Instant.now());
|
|
if (isUpdate)
|
|
this.entityManager.merge(data);
|
|
else {
|
|
this.entityManager.persist(data);
|
|
}
|
|
|
|
this.entityManager.flush();
|
|
|
|
this.updateVersionStatusAndSave(data, previousStatus, data.getStatus());
|
|
|
|
this.entityManager.flush();
|
|
|
|
return data;
|
|
}
|
|
|
|
private @NotNull DmpPropertiesEntity buildDmpPropertiesEntity(DmpPropertiesPersist persist){
|
|
DmpPropertiesEntity data = new DmpPropertiesEntity();
|
|
if (persist == null) return data;
|
|
if (!this.conventionService.isListNullOrEmpty(persist.getContacts())){
|
|
data.setContacts(new ArrayList<>());
|
|
for (DmpContactPersist contactPersist: persist.getContacts()) {
|
|
data.getContacts().add(this.buildDmpContactEntity(contactPersist));
|
|
}
|
|
}
|
|
if (persist.getDmpBlueprintValues() != null && !persist.getDmpBlueprintValues().isEmpty()){
|
|
data.setDmpBlueprintValues(new ArrayList<>());
|
|
for (DmpBlueprintValuePersist fieldValuePersist: persist.getDmpBlueprintValues().values()) {
|
|
if (!this.conventionService.isNullOrEmpty(fieldValuePersist.getFieldValue())) data.getDmpBlueprintValues().add(this.buildDmpBlueprintValueEntity(fieldValuePersist));
|
|
}
|
|
}
|
|
return data;
|
|
}
|
|
|
|
private @NotNull DmpContactEntity buildDmpContactEntity(DmpContactPersist persist){
|
|
DmpContactEntity data = new DmpContactEntity();
|
|
if (persist == null) return data;
|
|
|
|
data.setEmail(persist.getEmail());
|
|
data.setLastName(persist.getLastName());
|
|
data.setFirstName(persist.getFirstName());
|
|
data.setUserId(persist.getUserId());
|
|
return data;
|
|
}
|
|
|
|
|
|
|
|
private @NotNull DmpBlueprintValueEntity buildDmpBlueprintValueEntity(DmpBlueprintValuePersist persist){
|
|
DmpBlueprintValueEntity data = new DmpBlueprintValueEntity();
|
|
if (persist == null) return data;
|
|
|
|
data.setValue(persist.getFieldValue());
|
|
data.setFieldId(persist.getFieldId());
|
|
return data;
|
|
}
|
|
|
|
|
|
|
|
private @NotNull List<DmpReferencePersist> buildDmpReferencePersists(DmpPropertiesPersist persist){
|
|
List<DmpReferencePersist> dmpReferencePersists = new ArrayList<>();
|
|
if (persist.getDmpBlueprintValues() != null && !persist.getDmpBlueprintValues().isEmpty()){
|
|
for (DmpBlueprintValuePersist fieldValuePersist: persist.getDmpBlueprintValues().values()) {
|
|
if (this.conventionService.isNullOrEmpty(fieldValuePersist.getFieldValue()) && !this.conventionService.isListNullOrEmpty( fieldValuePersist.getReferences())) {
|
|
for (ReferencePersist referencePersist : fieldValuePersist.getReferences()) {
|
|
DmpReferencePersist dmpReferencePersist = new DmpReferencePersist();
|
|
dmpReferencePersist.setData(new DmpReferenceDataPersist());
|
|
dmpReferencePersist.getData().setBlueprintFieldId(fieldValuePersist.getFieldId());
|
|
dmpReferencePersist.setReference(referencePersist);
|
|
dmpReferencePersists.add(dmpReferencePersist);
|
|
}
|
|
}
|
|
}
|
|
}
|
|
return dmpReferencePersists;
|
|
}
|
|
|
|
private void patchAndSaveReferences(List<DmpReferencePersist> models, UUID dmpId, eu.eudat.commons.types.dmpblueprint.DefinitionEntity blueprintDefinition) throws InvalidApplicationException {
|
|
if (models == null) models = new ArrayList<>();
|
|
|
|
List<DmpReferenceEntity> dmpReferences = this.queryFactory.query(DmpReferenceQuery.class).dmpIds(dmpId).collect();
|
|
Map<UUID, List<DmpReferenceEntity>> dmpReferenceEntityByReferenceId = new HashMap<>();
|
|
for (DmpReferenceEntity dmpReferenceEntity : dmpReferences){
|
|
List<DmpReferenceEntity> dmpReferenceEntities = dmpReferenceEntityByReferenceId.getOrDefault(dmpReferenceEntity.getReferenceId(), null);
|
|
if (dmpReferenceEntities == null) {
|
|
dmpReferenceEntities = new ArrayList<>();
|
|
dmpReferenceEntityByReferenceId.put(dmpReferenceEntity.getReferenceId(), dmpReferenceEntities);
|
|
}
|
|
dmpReferenceEntities.add(dmpReferenceEntity);
|
|
}
|
|
|
|
Map<UUID, DmpReferenceDataEntity> dmpReferenceDataEntityMap = new HashMap<>();
|
|
for (DmpReferenceEntity dmpReferenceEntity : dmpReferences){
|
|
dmpReferenceDataEntityMap.put(dmpReferenceEntity.getId(), this.jsonHandlingService.fromJsonSafe(DmpReferenceDataEntity.class, dmpReferenceEntity.getData()));
|
|
}
|
|
|
|
List<UUID> updatedCreatedIds = new ArrayList<>();
|
|
for (DmpReferencePersist model : models) {
|
|
ReferencePersist referencePersist = model.getReference();
|
|
ReferenceEntity referenceEntity;
|
|
if (this.conventionService.isValidGuid(referencePersist.getId())){
|
|
referenceEntity = this.entityManager.find(ReferenceEntity.class, referencePersist.getId());
|
|
if (referenceEntity == null) throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{referencePersist.getId(), Reference.class.getSimpleName()}, LocaleContextHolder.getLocale()));
|
|
} else {
|
|
ReferenceTypeFieldEntity fieldEntity = blueprintDefinition.getFieldById(model.getData().getBlueprintFieldId()).stream().filter(x-> x.getCategory().equals(DmpBlueprintFieldCategory.ReferenceType)).map(x-> (ReferenceTypeFieldEntity)x).findFirst().orElse(null);
|
|
if (fieldEntity == null) throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{model.getData().getBlueprintFieldId(), ReferenceTypeFieldEntity.class.getSimpleName()}, LocaleContextHolder.getLocale()));
|
|
|
|
referenceEntity = this.queryFactory.query(ReferenceQuery.class).sourceTypes(referencePersist.getSourceType()).typeIds(fieldEntity.getReferenceTypeId()).sources(referencePersist.getSource()).isActive(IsActive.Active).references(referencePersist.getReference()).first();
|
|
if (referenceEntity == null){
|
|
referenceEntity = new ReferenceEntity();
|
|
referenceEntity.setId(UUID.randomUUID());
|
|
referenceEntity.setLabel(referencePersist.getLabel());
|
|
referenceEntity.setIsActive(IsActive.Active);
|
|
referenceEntity.setCreatedAt(Instant.now());
|
|
referenceEntity.setTypeId(fieldEntity.getReferenceTypeId());
|
|
|
|
referenceEntity.setDefinition(this.xmlHandlingService.toXmlSafe(this.buildDefinitionEntity(referencePersist.getDefinition())));
|
|
referenceEntity.setUpdatedAt(Instant.now());
|
|
referenceEntity.setReference(referencePersist.getReference());
|
|
referenceEntity.setAbbreviation(referencePersist.getAbbreviation());
|
|
referenceEntity.setSource(referencePersist.getSource());
|
|
referenceEntity.setSourceType(referencePersist.getSourceType());
|
|
this.entityManager.persist(referenceEntity);
|
|
}
|
|
}
|
|
|
|
DmpReferenceEntity data = null;
|
|
List<DmpReferenceEntity> dmpReferenceEntities = dmpReferenceEntityByReferenceId.getOrDefault(referenceEntity.getId(), new ArrayList<>());
|
|
for (DmpReferenceEntity dmpReferenceEntity : dmpReferenceEntities){
|
|
DmpReferenceDataEntity dmpReferenceDataEntity = dmpReferenceDataEntityMap.getOrDefault(dmpReferenceEntity.getId(), new DmpReferenceDataEntity());
|
|
if (Objects.equals(dmpReferenceDataEntity.getBlueprintFieldId(), model.getData().getBlueprintFieldId())){
|
|
data = dmpReferenceEntity;
|
|
break;
|
|
}
|
|
}
|
|
boolean isUpdate = data != null;
|
|
|
|
if (!isUpdate) {
|
|
data = new DmpReferenceEntity();
|
|
data.setId(UUID.randomUUID());
|
|
data.setReferenceId(referenceEntity.getId());
|
|
data.setDmpId(dmpId);
|
|
data.setCreatedAt(Instant.now());
|
|
data.setIsActive(IsActive.Active);
|
|
data.setData(this.jsonHandlingService.toJsonSafe(this.buildDmpReferenceDataEntity(model.getData())));
|
|
}
|
|
updatedCreatedIds.add(data.getId());
|
|
|
|
data.setUpdatedAt(Instant.now());
|
|
|
|
if (isUpdate) this.entityManager.merge(data);
|
|
else this.entityManager.persist(data);
|
|
}
|
|
List<DmpReferenceEntity> toDelete = dmpReferences.stream().filter(x-> updatedCreatedIds.stream().noneMatch(y-> y.equals(x.getId()))).collect(Collectors.toList());
|
|
this.deleterFactory.deleter(DmpReferenceDeleter.class).delete(toDelete);
|
|
this.entityManager.flush();
|
|
}
|
|
|
|
|
|
private void patchAndSaveTemplates(UUID id, List<DmpDescriptionTemplatePersist> models) throws InvalidApplicationException {
|
|
if (models == null) models = new ArrayList<>();
|
|
List<DmpDescriptionTemplateEntity> items = this.queryFactory.query(DmpDescriptionTemplateQuery.class).isActive(IsActive.Active).dmpIds(id).collect();
|
|
List<UUID> updatedCreatedIds = new ArrayList<>();
|
|
for (DmpDescriptionTemplatePersist model : models) {
|
|
DmpDescriptionTemplateEntity data = items.stream().filter(x -> x.getDescriptionTemplateGroupId().equals(model.getDescriptionTemplateGroupId()) && x.getSectionId().equals(model.getSectionId())).findFirst().orElse(null);
|
|
if (data == null){
|
|
data = new DmpDescriptionTemplateEntity();
|
|
data.setId(UUID.randomUUID());
|
|
data.setIsActive(IsActive.Active);
|
|
data.setCreatedAt(Instant.now());
|
|
data.setUpdatedAt(Instant.now());
|
|
data.setDmpId(id);
|
|
data.setSectionId(model.getSectionId());
|
|
data.setDescriptionTemplateGroupId(model.getDescriptionTemplateGroupId());
|
|
this.entityManager.persist(data);
|
|
}
|
|
updatedCreatedIds.add(data.getId());
|
|
}
|
|
List<DmpDescriptionTemplateEntity> toDelete = items.stream().filter(x-> updatedCreatedIds.stream().noneMatch(y-> y.equals(x.getId()))).collect(Collectors.toList());
|
|
|
|
this.deleterFactory.deleter(DmpDescriptionTemplateDeleter.class).delete(toDelete);
|
|
}
|
|
|
|
private @NotNull DefinitionEntity buildDefinitionEntity(DefinitionPersist persist){
|
|
DefinitionEntity data = new DefinitionEntity();
|
|
if (persist == null) return data;
|
|
if (!this.conventionService.isListNullOrEmpty(persist.getFields())){
|
|
data.setFields(new ArrayList<>());
|
|
for (FieldPersist fieldPersist: persist.getFields()) {
|
|
data.getFields().add(this.buildDmpContactEntity(fieldPersist));
|
|
}
|
|
}
|
|
|
|
return data;
|
|
}
|
|
|
|
private @NotNull DmpReferenceDataEntity buildDmpReferenceDataEntity(DmpReferenceDataPersist persist){
|
|
DmpReferenceDataEntity data = new DmpReferenceDataEntity();
|
|
if (persist == null) return data;
|
|
data.setBlueprintFieldId(persist.getBlueprintFieldId());
|
|
return data;
|
|
}
|
|
|
|
private @NotNull FieldEntity buildDmpContactEntity(FieldPersist persist){
|
|
FieldEntity data = new FieldEntity();
|
|
if (persist == null) return data;
|
|
|
|
data.setCode(persist.getCode());
|
|
data.setDataType(persist.getDataType());
|
|
data.setCode(persist.getCode());
|
|
|
|
return data;
|
|
}
|
|
|
|
public void finalize(UUID id, List<UUID> descriptionIds) throws MyForbiddenException, MyValidationException, MyApplicationException, MyNotFoundException, InvalidApplicationException, IOException {
|
|
this.authorizationService.authorizeAtLeastOneForce(List.of(this.authorizationContentResolver.dmpAffiliation(id)), Permission.FinalizeDmp);
|
|
DmpEntity dmp = this.queryFactory.query(DmpQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).ids(id).isActive(IsActive.Active).first();
|
|
|
|
if (dmp == null){
|
|
throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{id, Dmp.class.getSimpleName()}, LocaleContextHolder.getLocale()));
|
|
}
|
|
|
|
if (dmp.getStatus().equals(DmpStatus.Finalized)){
|
|
throw new MyApplicationException("DMP is already finalized");
|
|
}
|
|
|
|
List<DescriptionEntity> descriptions = this.queryFactory.query(DescriptionQuery.class)
|
|
.authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).dmpIds(id).isActive(IsActive.Active).collect();
|
|
|
|
for (DescriptionEntity description: descriptions) {
|
|
if (descriptionIds.contains(description.getId())){
|
|
// description to be finalized
|
|
if (description.getStatus().equals(DescriptionStatus.Finalized)){
|
|
throw new MyApplicationException("Description is already finalized");
|
|
}
|
|
if (this.descriptionService.validate(List.of(description.getId())).getFirst().getResult().equals(DescriptionValidationOutput.Invalid)){
|
|
throw new MyApplicationException("Description is invalid");
|
|
}
|
|
description.setStatus(DescriptionStatus.Finalized);
|
|
description.setUpdatedAt(Instant.now());
|
|
description.setFinalizedAt(Instant.now());
|
|
this.entityManager.merge(description);
|
|
} else if (description.getStatus().equals(DescriptionStatus.Draft)) {
|
|
// description to be canceled
|
|
description.setStatus(DescriptionStatus.Canceled);
|
|
this.deleterFactory.deleter(DescriptionDeleter.class).delete(List.of(description), true);
|
|
}
|
|
}
|
|
|
|
DmpStatus previousStatus = dmp.getStatus();
|
|
dmp.setStatus(DmpStatus.Finalized);
|
|
dmp.setUpdatedAt(Instant.now());
|
|
dmp.setFinalizedAt(Instant.now());
|
|
|
|
this.entityManager.merge(dmp);
|
|
this.entityManager.flush();
|
|
|
|
this.updateVersionStatusAndSave(dmp, previousStatus, dmp.getStatus());
|
|
this.entityManager.flush();
|
|
|
|
this.elasticService.persistDmp(dmp);
|
|
this.sendNotification(dmp);
|
|
}
|
|
|
|
public void undoFinalize(UUID id, FieldSet fields) throws MyForbiddenException, MyValidationException, MyApplicationException, MyNotFoundException, InvalidApplicationException {
|
|
this.authorizationService.authorizeAtLeastOneForce(List.of(this.authorizationContentResolver.dmpAffiliation(id)), Permission.UndoFinalizeDmp);
|
|
DmpEntity dmp = this.queryFactory.query(DmpQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).ids(id).isActive(IsActive.Active).firstAs(fields);
|
|
|
|
if (dmp == null) throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{id, Dmp.class.getSimpleName()}, LocaleContextHolder.getLocale()));
|
|
|
|
if (!dmp.getStatus().equals(DmpStatus.Finalized)) throw new MyApplicationException("DMP is already drafted");
|
|
|
|
EntityDoiQuery entityDoiQuery = this.queryFactory.query(EntityDoiQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).types(EntityType.DMP).entityIds(dmp.getId());
|
|
if (entityDoiQuery.count() > 0) throw new MyApplicationException("DMP is deposited");
|
|
|
|
dmp.setStatus(DmpStatus.Draft);
|
|
dmp.setUpdatedAt(Instant.now());
|
|
|
|
this.entityManager.merge(dmp);
|
|
this.entityManager.flush();
|
|
|
|
this.updateVersionStatusAndSave(dmp, DmpStatus.Finalized, dmp.getStatus());
|
|
this.entityManager.flush();
|
|
this.sendNotification(dmp);
|
|
}
|
|
|
|
// invites
|
|
public void inviteUserOrAssignUsers(UUID id, List<DmpUserPersist> users) throws InvalidApplicationException, JAXBException, IOException {
|
|
this.inviteUserOrAssignUsers(id, users, true);
|
|
}
|
|
|
|
|
|
|
|
private List<DmpUserPersist> inviteUserOrAssignUsers(UUID id, List<DmpUserPersist> users, boolean persistUsers) throws InvalidApplicationException, JAXBException, IOException {
|
|
this.authorizationService.authorizeAtLeastOneForce(List.of(this.authorizationContentResolver.dmpAffiliation(id)), Permission.InviteDmpUsers);
|
|
|
|
DmpEntity dmp = this.queryFactory.query(DmpQuery.class).ids(id).first();
|
|
if (dmp == null){
|
|
throw new InvalidApplicationException("Dmp does not exist!");
|
|
}
|
|
|
|
List<DmpUserPersist> usersToAssign = new ArrayList<>();
|
|
for (DmpUserPersist user :users) {
|
|
UUID userId = null;
|
|
if (user.getUser() != null){
|
|
userId = user.getUser();
|
|
} else if (user.getEmail() != null) {
|
|
UserContactInfoEntity contactInfoEntity = this.queryFactory.query(UserContactInfoQuery.class).values(user.getEmail()).types(ContactInfoType.Email).first();
|
|
if (contactInfoEntity != null){
|
|
userId = contactInfoEntity.getUserId();
|
|
}
|
|
}
|
|
if (userId != null){
|
|
user.setUser(userId);
|
|
usersToAssign.add(user);
|
|
if (this.userScope.getUserId() != userId){
|
|
this.sendDmpInvitationExistingUser(user.getUser(), dmp, user.getRole());
|
|
}
|
|
}else if (user.getEmail() != null) {
|
|
this.sendDmpInvitationExternalUser(user.getEmail(),dmp, user.getRole());
|
|
}
|
|
|
|
}
|
|
if(!usersToAssign.isEmpty() && persistUsers) this.assignUsers(id, usersToAssign, null, true);
|
|
return usersToAssign;
|
|
}
|
|
|
|
private void sendDmpInvitationExistingUser(UUID userId, DmpEntity dmp, DmpUserRole role) throws InvalidApplicationException {
|
|
UserEntity recipient = this.queryFactory.query(UserQuery.class).ids(userId).isActive(IsActive.Active).first();
|
|
String email = this.queryFactory.query(UserContactInfoQuery.class).userIds(recipient.getId()).first().getValue();
|
|
this.createDmpInvitationExistingUserEvent(recipient, dmp, role, email, NotificationContactType.EMAIL);
|
|
this.createDmpInvitationExistingUserEvent(recipient, dmp, role, email, NotificationContactType.IN_APP);
|
|
}
|
|
|
|
private void createDmpInvitationExistingUserEvent(UserEntity recipient, DmpEntity dmp, DmpUserRole role, String email, NotificationContactType type) throws InvalidApplicationException {
|
|
|
|
NotifyIntegrationEvent event = new NotifyIntegrationEvent();
|
|
event.setUserId(this.userScope.getUserIdSafe());
|
|
|
|
List<ContactPair> contactPairs = new ArrayList<>();
|
|
contactPairs.add(new ContactPair(ContactInfoType.Email, email));
|
|
NotificationContactData contactData = new NotificationContactData(contactPairs, null, null);
|
|
event.setContactHint(jsonHandlingService.toJsonSafe(contactData));
|
|
event.setContactTypeHint(type);
|
|
event.setNotificationType(notificationProperties.getDmpInvitationExistingUserType());
|
|
NotificationFieldData data = new NotificationFieldData();
|
|
List<FieldInfo> fieldInfoList = new ArrayList<>();
|
|
fieldInfoList.add(new FieldInfo("{recipient}", DataType.String, recipient.getName()));
|
|
fieldInfoList.add(new FieldInfo("{reasonName}", DataType.String, this.queryFactory.query(UserQuery.class).ids(this.userScope.getUserIdSafe()).first().getName()));
|
|
fieldInfoList.add(new FieldInfo("{dmpname}", DataType.String, dmp.getLabel()));
|
|
fieldInfoList.add(new FieldInfo("{dmprole}", DataType.String, role.toString()));
|
|
fieldInfoList.add(new FieldInfo("{id}", DataType.String, dmp.getId().toString()));
|
|
data.setFields(fieldInfoList);
|
|
event.setData(jsonHandlingService.toJsonSafe(data));
|
|
eventHandler.handle(event);
|
|
}
|
|
|
|
private void sendDmpInvitationExternalUser(String email, DmpEntity dmp, DmpUserRole role) throws JAXBException, InvalidApplicationException {
|
|
String token = this.createActionConfirmation(email, dmp, role);
|
|
|
|
NotifyIntegrationEvent event = new NotifyIntegrationEvent();
|
|
event.setUserId(this.userScope.getUserIdSafe());
|
|
|
|
List<ContactPair> contactPairs = new ArrayList<>();
|
|
contactPairs.add(new ContactPair(ContactInfoType.Email, email));
|
|
NotificationContactData contactData = new NotificationContactData(contactPairs, null, null);
|
|
event.setContactHint(jsonHandlingService.toJsonSafe(contactData));
|
|
event.setContactTypeHint(NotificationContactType.EMAIL);
|
|
event.setNotificationType(notificationProperties.getDmpInvitationExternalUserType());
|
|
NotificationFieldData data = new NotificationFieldData();
|
|
List<FieldInfo> fieldInfoList = new ArrayList<>();
|
|
fieldInfoList.add(new FieldInfo("{recipient}", DataType.String, email));
|
|
fieldInfoList.add(new FieldInfo("{confirmationToken}", DataType.String, token));
|
|
fieldInfoList.add(new FieldInfo("{dmpname}", DataType.String, dmp.getLabel()));
|
|
fieldInfoList.add(new FieldInfo("{dmprole}", DataType.String, role.toString()));
|
|
data.setFields(fieldInfoList);
|
|
event.setData(jsonHandlingService.toJsonSafe(data));
|
|
eventHandler.handle(event);
|
|
}
|
|
|
|
private String createActionConfirmation(String email, DmpEntity dmp, DmpUserRole role) throws JAXBException, InvalidApplicationException {
|
|
ActionConfirmationPersist persist = new ActionConfirmationPersist();
|
|
persist.setType(ActionConfirmationType.DmpInvitation);
|
|
persist.setStatus(ActionConfirmationStatus.Requested);
|
|
persist.setToken(UUID.randomUUID().toString());
|
|
persist.setDmpInvitation(new DmpInvitationPersist(email, dmp.getId(), role));
|
|
persist.setExpiresAt(Instant.now().plusSeconds(this.notificationProperties.getEmailExpirationTimeSeconds()));
|
|
validatorFactory.validator(ActionConfirmationPersist.ActionConfirmationPersistValidator.class).validateForce(persist);
|
|
this.actionConfirmationService.persist(persist, null);
|
|
|
|
return persist.getToken();
|
|
}
|
|
|
|
|
|
public void dmpInvitationAccept(String token) {
|
|
ActionConfirmationEntity action = this.queryFactory.query(ActionConfirmationQuery.class).tokens(token).types(ActionConfirmationType.DmpInvitation).isActive(IsActive.Active).first();
|
|
|
|
if (action == null){
|
|
throw new MyApplicationException("Token does not exist!");
|
|
}
|
|
if (action.getStatus().equals(ActionConfirmationStatus.Accepted)){
|
|
throw new MyApplicationException("Invitation is already confirmed!");
|
|
}
|
|
if (action.getExpiresAt().compareTo(Instant.now()) < 0){
|
|
throw new MyApplicationException("Token has expired!");
|
|
}
|
|
|
|
DmpInvitationEntity dmpInvitation = this.xmlHandlingService.fromXmlSafe(DmpInvitationEntity.class, action.getData());
|
|
|
|
DmpUserEntity data = new DmpUserEntity();
|
|
data.setId(UUID.randomUUID());
|
|
data.setIsActive(IsActive.Active);
|
|
data.setCreatedAt(Instant.now());
|
|
data.setUpdatedAt(Instant.now());
|
|
data.setRole(dmpInvitation.getRole());
|
|
data.setUserId(this.userScope.getUserIdSafe());
|
|
data.setDmpId(dmpInvitation.getDmpId());
|
|
this.entityManager.persist(data);
|
|
|
|
action.setStatus(ActionConfirmationStatus.Accepted);
|
|
this.entityManager.merge(action);
|
|
}
|
|
|
|
}
|