396 lines
16 KiB
Java
396 lines
16 KiB
Java
package eu.eudat.models.data.dmp;
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import com.fasterxml.jackson.core.JsonProcessingException;
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import com.fasterxml.jackson.databind.JsonMappingException;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import eu.eudat.data.entities.*;
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import eu.eudat.logic.utilities.builders.XmlBuilder;
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import eu.eudat.models.DataModel;
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import eu.eudat.models.data.datasetwizard.DatasetWizardModel;
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import eu.eudat.models.data.dynamicfields.DynamicFieldWithValue;
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import eu.eudat.models.data.entities.xmlmodels.dmpprofiledefinition.DataManagementPlanProfile;
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import eu.eudat.models.data.funder.FunderDMPEditorModel;
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import eu.eudat.models.data.helpermodels.Tuple;
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import eu.eudat.models.data.listingmodels.DatasetListingModel;
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import eu.eudat.models.data.listingmodels.UserInfoListingModel;
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import eu.eudat.models.data.grant.GrantDMPEditorModel;
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import eu.eudat.models.data.project.ProjectDMPEditorModel;
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import eu.eudat.models.data.userinfo.UserListingModel;
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import net.minidev.json.JSONObject;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import java.util.*;
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import java.util.stream.Collectors;
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public class DataManagementPlanEditorModel implements DataModel<DMP, DataManagementPlanEditorModel> {
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private static final ObjectMapper objectMapper = new ObjectMapper();
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private static final Logger logger = LoggerFactory.getLogger(DataManagementPlanEditorModel.class);
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private UUID id;
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private String label;
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private UUID groupId;
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private Tuple<UUID, String> profile;
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private int version;
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private int status;
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private boolean lockable;
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private String description;
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private List<DatasetWizardModel> datasets;
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private List<AssociatedProfile> profiles;
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private eu.eudat.models.data.grant.GrantDMPEditorModel grant;
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private List<Organisation> organisations;
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private List<Researcher> researchers;
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private List<UserListingModel> associatedUsers;
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private DataManagementPlanProfile definition;
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private eu.eudat.models.data.userinfo.UserInfo creator;
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private Date modified;
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private Date created;
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private List<DynamicFieldWithValue> dynamicFields;
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private Map<String, Object> properties;
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private List<UserInfoListingModel> users;
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private List<UUID> datasetsToBeFinalized;
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private ProjectDMPEditorModel project;
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private FunderDMPEditorModel funder;
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private Map<String, Object> extraProperties;
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public UUID getId() {
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return id;
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}
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public void setId(UUID id) {
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this.id = id;
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}
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public Tuple<UUID, String> getProfile() {
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return profile;
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}
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public void setProfile(Tuple<UUID, String> profile) {
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this.profile = profile;
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}
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public String getLabel() {
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return label;
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}
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public void setLabel(String label) {
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this.label = label;
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}
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public UUID getGroupId() {
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return groupId;
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}
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public void setGroupId(UUID groupId) {
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this.groupId = groupId;
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}
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public List<UserListingModel> getAssociatedUsers() {
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return associatedUsers;
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}
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public void setAssociatedUsers(List<UserListingModel> associatedUsers) {
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this.associatedUsers = associatedUsers;
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}
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public int getVersion() {
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return version;
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}
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public void setVersion(int version) {
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this.version = version;
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}
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public List<Organisation> getOrganisations() {
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return organisations;
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}
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public void setOrganisations(List<Organisation> organizations) {
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this.organisations = organizations;
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}
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public List<Researcher> getResearchers() {
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return researchers;
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}
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public void setResearchers(List<Researcher> researchers) {
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this.researchers = researchers;
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}
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public int getStatus() {
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return status;
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}
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public void setStatus(int status) {
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this.status = status;
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}
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public GrantDMPEditorModel getGrant() {
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return grant;
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}
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public void setGrant(GrantDMPEditorModel grant) {
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this.grant = grant;
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}
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public eu.eudat.models.data.userinfo.UserInfo getCreator() {
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return creator;
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}
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public void setCreator(eu.eudat.models.data.userinfo.UserInfo creator) {
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this.creator = creator;
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}
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public List<AssociatedProfile> getProfiles() {
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return profiles;
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}
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public void setProfiles(List<AssociatedProfile> profiles) {
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this.profiles = profiles;
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}
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public Date getModified() {
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return modified;
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}
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public void setModified(Date modified) {
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this.modified = modified;
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}
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public Date getCreated() {
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return created;
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}
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public void setCreated(Date created) {
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this.created = created;
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}
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public String getDescription() {
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return description;
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}
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public void setDescription(String description) {
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this.description = description;
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}
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public DataManagementPlanProfile getDefinition() {
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return definition;
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}
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public void setDefinition(DataManagementPlanProfile definition) {
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this.definition = definition;
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}
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public Map<String, Object> getProperties() {
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return properties;
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}
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public void setProperties(Map<String, Object> properties) {
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this.properties = properties;
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}
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public List<DynamicFieldWithValue> getDynamicFields() {
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return dynamicFields;
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}
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public void setDynamicFields(List<DynamicFieldWithValue> dynamicFields) {
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this.dynamicFields = dynamicFields;
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}
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public boolean getLockable() {
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return lockable;
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}
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public void setLockable(boolean lockable) {
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this.lockable = lockable;
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}
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public List<DatasetWizardModel> getDatasets() {
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return datasets;
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}
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public void setDatasets(List<DatasetWizardModel> datasets) {
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this.datasets = datasets;
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}
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public List<UserInfoListingModel> getUsers() {
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return users;
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}
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public void setUsers(List<UserInfoListingModel> users) {
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this.users = users;
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}
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public List<UUID> getDatasetsToBeFinalized() {
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return datasetsToBeFinalized;
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}
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public void setDatasetsToBeFinalized(List<UUID> datasetsToBeFinalized) {
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this.datasetsToBeFinalized = datasetsToBeFinalized;
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}
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public ProjectDMPEditorModel getProject() {
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return project;
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}
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public void setProject(ProjectDMPEditorModel project) {
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this.project = project;
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}
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public FunderDMPEditorModel getFunder() {
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return funder;
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}
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public void setFunder(FunderDMPEditorModel funder) {
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this.funder = funder;
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}
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public Map<String, Object> getExtraProperties() {
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return extraProperties;
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}
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public void setExtraProperties(Map<String, Object> extraProperties) {
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this.extraProperties = extraProperties;
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}
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@Override
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public DataManagementPlanEditorModel fromDataModel(DMP entity) {
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try {
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this.id = entity.getId();
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this.profile = entity.getProfile() != null ? new Tuple<UUID, String>(entity.getProfile().getId(), entity.getProfile().getLabel()) : null;
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this.organisations = entity.getOrganisations().stream().map(item -> new Organisation().fromDataModel(item)).collect(Collectors.toList());
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this.researchers = entity.getResearchers().stream().map(item -> new Researcher().fromDataModel(item)).collect(Collectors.toList());
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this.version = entity.getVersion();
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this.groupId = this.groupId == null ? null : entity.getGroupId();
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this.label = entity.getLabel();
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this.grant = new GrantDMPEditorModel();
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this.properties = entity.getProperties() != null ? objectMapper.readValue(entity.getProperties(), LinkedHashMap.class) : null;
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this.grant.getExistGrant().fromDataModel(entity.getGrant());
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this.grant.getExistGrant().setSource("");
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this.creator = new eu.eudat.models.data.userinfo.UserInfo();
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this.groupId = entity.getGroupId();
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this.lockable = entity.getDataset().stream().findAny().isPresent();
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this.definition = entity.getProfile() == null ? null : new DataManagementPlanProfile().fromXml(XmlBuilder.fromXml(entity.getProfile().getDefinition()).getDocumentElement());
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if (this.definition != null && this.definition.getFields() != null && !this.definition.getFields().isEmpty() && this.properties != null) {
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this.definition.getFields().forEach(item -> {
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Optional<Map<String, Object>> fieldOptional = ((List<Map<String, Object>>) this.properties.get("fields")).stream().filter(field -> field.get("id").equals(item.getId().toString())).findFirst();
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if (fieldOptional.isPresent()) item.setValue(fieldOptional.get().get("value"));
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});
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}
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if (entity.getUsers().stream().anyMatch(userDMP -> userDMP.getRole().equals(UserDMP.UserDMPRoles.OWNER.getValue())))
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this.creator.fromDataModel(entity.getUsers().stream().filter(user -> user.getRole().equals(UserDMP.UserDMPRoles.OWNER.getValue())).findFirst().get().getUser());
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if (entity.getAssociatedDmps() != null && !entity.getAssociatedDmps().isEmpty()) {
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this.profiles = new LinkedList<>();
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for (DatasetProfile datasetProfile : entity.getAssociatedDmps()) {
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AssociatedProfile associatedProfile = new AssociatedProfile().fromData(datasetProfile);
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this.profiles.add(associatedProfile);
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}
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}
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this.datasets = entity.getDataset().stream().map(item -> new DatasetWizardModel().fromDataModelNoDmp(item)).collect(Collectors.toList());
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this.modified = entity.getModified();
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this.created = entity.getCreated();
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this.description = entity.getDescription();
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this.status = entity.getStatus();
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this.project = new ProjectDMPEditorModel();
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this.project.getExistProject().fromDataModel(entity.getProject());
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this.associatedUsers = entity.getUsers().stream().map(item -> new UserListingModel().fromDataModel(item.getUser())).collect(Collectors.toList());
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this.users = entity.getUsers().stream().map(item -> new UserInfoListingModel().fromDataModel(item)).collect(Collectors.toList());
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this.funder = new FunderDMPEditorModel();
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this.funder.getExistFunder().fromDataModel(entity.getGrant().getFunder());
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this.extraProperties = entity.getExtraProperties() != null ? objectMapper.readValue(entity.getExtraProperties(), LinkedHashMap.class) : null;
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} catch (JsonProcessingException e) {
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logger.error(e.getLocalizedMessage(), e);
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}
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return this;
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}
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@Override
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public DMP toDataModel() throws Exception {
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DMP dataManagementPlanEntity = new DMP();
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if (this.profile != null) {
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DMPProfile dmpProfile = new DMPProfile();
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dmpProfile.setId(this.profile.getId());
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dataManagementPlanEntity.setProfile(dmpProfile);
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}
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dataManagementPlanEntity.setId(this.id);
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if (this.organisations != null && !this.organisations.isEmpty())
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dataManagementPlanEntity.setOrganisations(new HashSet<>(this.organisations.stream().map(Organisation::toDataModel).collect(Collectors.toList())));
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if (this.researchers != null && !this.researchers.isEmpty())
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dataManagementPlanEntity.setResearchers(new HashSet<>(this.researchers.stream().map(Researcher::toDataModel).collect(Collectors.toList())));
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dataManagementPlanEntity.setVersion(this.version);
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dataManagementPlanEntity.setLabel(this.label);
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if (this.grant != null) {
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if (this.grant.getExistGrant() != null && this.grant.getLabel() == null && this.grant.getDescription() == null)
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dataManagementPlanEntity.setGrant(this.grant.getExistGrant().toDataModel());
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else {
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Grant grant = new Grant();
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grant.setId(UUID.randomUUID());
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grant.setAbbreviation("");
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grant.setLabel(this.grant.getLabel());
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grant.setType(Grant.GrantType.INTERNAL.getValue());
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grant.setReference("dmp:" + (this.grant.getReference() != null ? this.grant.getReference() : grant.getId()));
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grant.setUri("");
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grant.setDefinition("");
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grant.setCreated(new Date());
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grant.setStatus(Grant.Status.ACTIVE.getValue());
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grant.setModified(new Date());
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grant.setDescription(this.grant.getDescription());
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dataManagementPlanEntity.setGrant(grant);
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}
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}
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if (this.funder == null) {
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// dataManagementPlanEntity.getGrant().setFunder(null);
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throw new Exception("Funder is a mandatory entity");
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} else if (this.funder.getExistFunder() == null && this.funder.getLabel() == null) {
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// dataManagementPlanEntity.getGrant().setFunder(null);
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throw new Exception("Funder is a mandatory entity");
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} else {
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if (this.funder.getLabel() != null) {
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Funder funder = new Funder();
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funder.setId(UUID.randomUUID());
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funder.setLabel(this.funder.getLabel());
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funder.setType(Funder.FunderType.INTERNAL.getValue());
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funder.setReference("dmp:" + (this.funder.getReference() != null ? this.funder.getReference() : funder.getId()));
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funder.setDefinition("");
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funder.setCreated(new Date());
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funder.setStatus(Funder.Status.ACTIVE.getValue());
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funder.setModified(new Date());
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dataManagementPlanEntity.getGrant().setFunder(funder);
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} else if (this.funder.getExistFunder() != null && this.funder.getLabel() == null){
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dataManagementPlanEntity.getGrant().setFunder(this.funder.getExistFunder().toDataModel());
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dataManagementPlanEntity.getGrant().getFunder().setType(Funder.FunderType.EXTERNAL.getValue());
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}
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}
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if (this.project != null) {
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if (this.project.getExistProject() != null && this.project.getLabel() == null && this.project.getDescription() == null)
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dataManagementPlanEntity.setProject(this.project.getExistProject().toDataModel());
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else {
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Project project = new Project();
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project.setId(UUID.randomUUID());
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project.setAbbreviation("");
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project.setLabel(this.project.getLabel());
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project.setType(Project.ProjectType.INTERNAL.getValue());
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project.setReference("dmp:" + (this.project.getReference() != null ? this.project.getReference() : project.getId()));
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project.setUri("");
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project.setDefinition("");
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project.setCreated(new Date());
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project.setStatus(Project.Status.ACTIVE.getValue());
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project.setModified(new Date());
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project.setDescription(this.project.getDescription());
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dataManagementPlanEntity.setProject(project);
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}
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}
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dataManagementPlanEntity.setStatus((short) this.status);
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if (this.status == (int) DMP.DMPStatus.FINALISED.getValue()) {
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dataManagementPlanEntity.setFinalizedAt(new Date());
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}
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dataManagementPlanEntity.setDescription(this.description);
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if (this.profiles != null) {
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Set<DatasetProfile> datasetProfiles = new HashSet<>();
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for (AssociatedProfile profile : this.profiles) {
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datasetProfiles.add(profile.toData());
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}
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dataManagementPlanEntity.setAssociatedDmps(datasetProfiles);
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}
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dataManagementPlanEntity.setProperties(this.properties != null ? JSONObject.toJSONString(this.properties) : null);
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dataManagementPlanEntity.setGroupId(this.groupId != null ? this.groupId : UUID.randomUUID());
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dataManagementPlanEntity.setModified(this.modified != null ? this.modified : new Date());
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dataManagementPlanEntity.setCreated(this.created != null ? this.created : new Date());
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if (this.dynamicFields != null)
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dataManagementPlanEntity.setDmpProperties(JSONObject.toJSONString(this.dynamicFields.stream().filter(item -> item.getValue() != null).collect(Collectors.toMap(DynamicFieldWithValue::getId, DynamicFieldWithValue::getValue))));
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dataManagementPlanEntity.setExtraProperties(this.extraProperties != null ? JSONObject.toJSONString(this.extraProperties) : null);
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return dataManagementPlanEntity;
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}
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@Override
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public String getHint() {
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return "fullyDetailed";
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}
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}
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