415 lines
18 KiB
Java
415 lines
18 KiB
Java
package eu.eudat.models.data.dmp;
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import com.fasterxml.jackson.core.JsonProcessingException;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import eu.eudat.data.entities.*;
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import eu.eudat.logic.utilities.builders.XmlBuilder;
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import eu.eudat.models.DataModel;
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import eu.eudat.models.data.datasetwizard.DatasetWizardModel;
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import eu.eudat.models.data.dynamicfields.DynamicFieldWithValue;
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import eu.eudat.models.data.entities.xmlmodels.dmpprofiledefinition.DataManagementPlanProfile;
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import eu.eudat.models.data.funder.Funder;
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import eu.eudat.models.data.grant.Grant;
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import eu.eudat.models.data.helpermodels.Tuple;
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import eu.eudat.models.data.listingmodels.UserInfoListingModel;
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import eu.eudat.models.data.project.Project;
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import eu.eudat.models.data.userinfo.UserListingModel;
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import net.minidev.json.JSONObject;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import java.util.*;
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import java.util.stream.Collectors;
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public class DataManagementPlan implements DataModel<DMP, DataManagementPlan> {
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private static final ObjectMapper objectMapper = new ObjectMapper();
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private static final Logger logger = LoggerFactory.getLogger(DataManagementPlan.class);
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private UUID id;
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private String label;
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private UUID groupId;
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private Tuple<UUID, String> profile;
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private int version;
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private int status;
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private boolean lockable;
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private String description;
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private List<DatasetWizardModel> datasets;
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private List<AssociatedProfile> profiles;
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private Grant grant;
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private List<Organisation> organisations;
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private List<Researcher> researchers;
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private List<UserListingModel> associatedUsers;
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private DataManagementPlanProfile definition;
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private eu.eudat.models.data.userinfo.UserInfo creator;
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private Date modified;
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private Date created;
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private List<DynamicFieldWithValue> dynamicFields;
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private Map<String, Object> properties;
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private List<UserInfoListingModel> users;
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private String doi;
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private Project project;
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private Funder funder;
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private Boolean isPublic;
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private Map<String, Object> extraProperties;
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public UUID getId() {
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return id;
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}
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public void setId(UUID id) {
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this.id = id;
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}
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public Tuple<UUID, String> getProfile() {
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return profile;
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}
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public void setProfile(Tuple<UUID, String> profile) {
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this.profile = profile;
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}
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public String getLabel() {
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return label;
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}
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public void setLabel(String label) {
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this.label = label;
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}
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public UUID getGroupId() {
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return groupId;
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}
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public void setGroupId(UUID groupId) {
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this.groupId = groupId;
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}
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public List<UserListingModel> getAssociatedUsers() {
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return associatedUsers;
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}
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public void setAssociatedUsers(List<UserListingModel> associatedUsers) {
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this.associatedUsers = associatedUsers;
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}
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public int getVersion() {
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return version;
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}
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public void setVersion(int version) {
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this.version = version;
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}
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public List<Organisation> getOrganisations() {
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return organisations;
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}
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public void setOrganisations(List<Organisation> organizations) {
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this.organisations = organizations;
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}
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public List<Researcher> getResearchers() {
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return researchers;
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}
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public void setResearchers(List<Researcher> researchers) {
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this.researchers = researchers;
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}
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public int getStatus() {
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return status;
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}
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public void setStatus(int status) {
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this.status = status;
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}
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public Grant getGrant() {
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return grant;
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}
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public void setGrant(Grant grant) {
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this.grant = grant;
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}
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public eu.eudat.models.data.userinfo.UserInfo getCreator() {
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return creator;
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}
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public void setCreator(eu.eudat.models.data.userinfo.UserInfo creator) {
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this.creator = creator;
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}
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public List<AssociatedProfile> getProfiles() {
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return profiles;
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}
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public void setProfiles(List<AssociatedProfile> profiles) {
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this.profiles = profiles;
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}
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public Date getModified() {
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return modified;
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}
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public void setModified(Date modified) {
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this.modified = modified;
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}
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public Date getCreated() {
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return created;
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}
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public void setCreated(Date created) {
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this.created = created;
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}
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public String getDescription() {
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return description;
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}
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public void setDescription(String description) {
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this.description = description;
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}
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public DataManagementPlanProfile getDefinition() {
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return definition;
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}
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public void setDefinition(DataManagementPlanProfile definition) {
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this.definition = definition;
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}
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public Map<String, Object> getProperties() {
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return properties;
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}
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public void setProperties(Map<String, Object> properties) {
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this.properties = properties;
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}
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public List<DynamicFieldWithValue> getDynamicFields() {
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return dynamicFields;
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}
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public void setDynamicFields(List<DynamicFieldWithValue> dynamicFields) {
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this.dynamicFields = dynamicFields;
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}
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public boolean getLockable() {
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return lockable;
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}
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public void setLockable(boolean lockable) {
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this.lockable = lockable;
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}
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public List<DatasetWizardModel> getDatasets() {
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return datasets;
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}
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public void setDatasets(List<DatasetWizardModel> datasets) {
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this.datasets = datasets;
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}
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public List<UserInfoListingModel> getUsers() {
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return users;
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}
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public void setUsers(List<UserInfoListingModel> users) {
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this.users = users;
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}
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public String getDoi() {
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return doi;
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}
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public void setDoi(String doi) {
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this.doi = doi;
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}
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public Project getProject() {
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return project;
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}
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public void setProject(Project project) {
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this.project = project;
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}
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public Funder getFunder() {
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return funder;
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}
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public void setFunder(Funder funder) {
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this.funder = funder;
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}
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public Boolean getPublic() {
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return isPublic;
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}
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public void setPublic(Boolean aPublic) {
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isPublic = aPublic;
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}
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public Map<String, Object> getExtraProperties() {
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return extraProperties;
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}
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public void setExtraProperties(Map<String, Object> extraProperties) {
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this.extraProperties = extraProperties;
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}
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@Override
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public DataManagementPlan fromDataModel(DMP entity) {
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try {
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this.id = entity.getId();
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this.profile = entity.getProfile() != null ? new Tuple<UUID, String>(entity.getProfile().getId(), entity.getProfile().getLabel()) : null;
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this.organisations = entity.getOrganisations() != null ? entity.getOrganisations().stream().map(item -> new Organisation().fromDataModel(item)).collect(Collectors.toList()) : new ArrayList<>();
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this.researchers = entity.getResearchers() != null ? entity.getResearchers().stream().map(item -> new Researcher().fromDataModel(item)).collect(Collectors.toList()) : new ArrayList<>();
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this.version = entity.getVersion();
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this.groupId = this.groupId == null ? null : entity.getGroupId();
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this.label = entity.getLabel();
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this.grant = new Grant();
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this.properties = entity.getProperties() != null ? objectMapper.readValue(entity.getProperties(), LinkedHashMap.class) : null;
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this.grant.fromDataModel(entity.getGrant());
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this.creator = new eu.eudat.models.data.userinfo.UserInfo();
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this.groupId = entity.getGroupId();
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this.lockable = entity.getDataset() != null && entity.getDataset().stream().findAny().isPresent();
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this.definition = entity.getProfile() == null ? null : new DataManagementPlanProfile().fromXml(XmlBuilder.fromXml(entity.getProfile().getDefinition()).getDocumentElement());
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if (this.definition != null && this.definition.getFields() != null && !this.definition.getFields().isEmpty() && this.properties != null) {
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this.definition.getFields().forEach(item -> {
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Optional<Map<String, Object>> fieldOptional = ((List<Map<String, Object>>) this.properties.get("fields")).stream().filter(field -> field.get("id").equals(item.getId().toString())).findFirst();
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if (fieldOptional.isPresent()) item.setValue(fieldOptional.get().get("value"));
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});
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}
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if (entity.getUsers() != null && entity.getUsers().stream().anyMatch(userDMP -> userDMP.getRole().equals(UserDMP.UserDMPRoles.OWNER.getValue())))
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this.creator.fromDataModel(entity.getUsers().stream().filter(user -> user.getRole().equals(UserDMP.UserDMPRoles.OWNER.getValue())).findFirst().get().getUser());
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if (entity.getAssociatedDmps() != null && !entity.getAssociatedDmps().isEmpty()) {
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this.profiles = new LinkedList<>();
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for (DatasetProfile datasetProfile : entity.getAssociatedDmps()) {
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AssociatedProfile associatedProfile = new AssociatedProfile().fromData(datasetProfile);
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this.profiles.add(associatedProfile);
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}
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}
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if (entity.getDataset() != null) {
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if (entity.isPublic()) {
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this.datasets = entity.getDataset().stream()
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.filter(dataset -> !dataset.getStatus().equals(Dataset.Status.DELETED.getValue()) && !dataset.getStatus().equals(Dataset.Status.CANCELED.getValue()) && !dataset.getStatus().equals(Dataset.Status.SAVED.getValue()))
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.map(x -> new DatasetWizardModel().fromDataModelNoDmp(x)).collect(Collectors.toList());
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} else {
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this.datasets = entity.getDataset().stream()
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.filter(dataset -> !dataset.getStatus().equals(Dataset.Status.DELETED.getValue()) && !dataset.getStatus().equals(Dataset.Status.CANCELED.getValue()))
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.map(x -> new DatasetWizardModel().fromDataModelNoDmp(x)).collect(Collectors.toList());
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}
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}
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this.modified = entity.getModified();
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this.created = entity.getCreated();
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this.description = entity.getDescription();
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this.status = entity.getStatus();
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this.associatedUsers = entity.getUsers() != null ? entity.getUsers().stream().map(item -> new UserListingModel().fromDataModel(item.getUser())).collect(Collectors.toList()) : new ArrayList<>();
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this.users = entity.getUsers() != null ? entity.getUsers().stream().map(item -> new UserInfoListingModel().fromDataModel(item)).collect(Collectors.toList()) : new ArrayList<>();
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this.doi = entity.getDoi();
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if (entity.getProject() != null) {
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this.project = new Project();
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this.project = new Project().fromDataModel(entity.getProject());
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}
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if (entity.getGrant().getFunder() != null) {
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this.funder = new Funder();
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this.funder.fromDataModel(entity.getGrant().getFunder());
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}
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this.isPublic = entity.isPublic();
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this.extraProperties = entity.getExtraProperties() != null ? objectMapper.readValue(entity.getExtraProperties(), LinkedHashMap.class) : null;
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} catch (JsonProcessingException e) {
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logger.error(e.getLocalizedMessage(), e);
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}
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return this;
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}
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@Override
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public DMP toDataModel() throws Exception {
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DMP dataManagementPlanEntity = new DMP();
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if (this.profile != null) {
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DMPProfile dmpProfile = new DMPProfile();
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dmpProfile.setId(this.profile.getId());
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dataManagementPlanEntity.setProfile(dmpProfile);
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}
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dataManagementPlanEntity.setId(this.id);
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if (this.organisations != null && !this.organisations.isEmpty())
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dataManagementPlanEntity.setOrganisations(new HashSet<>(this.organisations.stream().map(item -> item.toDataModel()).collect(Collectors.toList())));
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if (this.researchers != null && !this.researchers.isEmpty())
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dataManagementPlanEntity.setResearchers(new HashSet<>(this.researchers.stream().map(item -> item.toDataModel()).collect(Collectors.toList())));
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dataManagementPlanEntity.setVersion(this.version);
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dataManagementPlanEntity.setLabel(this.label);
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if (this.grant != null) dataManagementPlanEntity.setGrant(this.grant.toDataModel());
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dataManagementPlanEntity.setStatus((short) this.status);
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dataManagementPlanEntity.setDescription(this.description);
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if (this.project != null) {
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dataManagementPlanEntity.setProject(this.project.toDataModel());
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}
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if (this.profiles != null) {
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Set<DatasetProfile> datasetProfiles = new HashSet<>();
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for (AssociatedProfile profile : this.profiles) {
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datasetProfiles.add(profile.toData());
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}
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dataManagementPlanEntity.setAssociatedDmps(datasetProfiles);
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}
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dataManagementPlanEntity.setProperties(this.properties != null ? JSONObject.toJSONString(this.properties) : null);
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dataManagementPlanEntity.setGroupId(this.groupId != null ? this.groupId : UUID.randomUUID());
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dataManagementPlanEntity.setModified(this.modified != null ? this.modified : new Date());
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dataManagementPlanEntity.setCreated(this.created != null ? this.created : new Date());
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if (this.dynamicFields != null)
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dataManagementPlanEntity.setDmpProperties(JSONObject.toJSONString(this.dynamicFields.stream().filter(item -> item.getValue() != null).collect(Collectors.toMap(DynamicFieldWithValue::getId, DynamicFieldWithValue::getValue))));
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if (this.isPublic != null) {
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dataManagementPlanEntity.setPublic(this.isPublic);
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}
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dataManagementPlanEntity.setExtraProperties(this.extraProperties != null ? JSONObject.toJSONString(this.extraProperties) : null);
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return dataManagementPlanEntity;
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}
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public DataManagementPlan fromDataModelNoDatasets(DMP entity) {
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try {
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this.id = entity.getId();
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this.profile = entity.getProfile() != null ? new Tuple<UUID, String>(entity.getProfile().getId(), entity.getProfile().getLabel()) : null;
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this.organisations = entity.getOrganisations() != null ? entity.getOrganisations().stream().map(item -> new Organisation().fromDataModel(item)).collect(Collectors.toList()) : new ArrayList<>();
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this.researchers = entity.getResearchers() != null ? entity.getResearchers().stream().filter(Objects::nonNull).map(item -> new Researcher().fromDataModel(item)).collect(Collectors.toList()) : new ArrayList<>();
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this.version = entity.getVersion();
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this.label = entity.getLabel();
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this.grant = new Grant();
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this.properties = entity.getProperties() != null ? objectMapper.readValue(entity.getProperties(), LinkedHashMap.class) : null;
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this.creator = new eu.eudat.models.data.userinfo.UserInfo();
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this.groupId = entity.getGroupId();
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this.lockable = entity.getDataset() != null && entity.getDataset().stream().findAny().isPresent();
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this.definition = entity.getProfile() == null ? null : new DataManagementPlanProfile().fromXml(XmlBuilder.fromXml(entity.getProfile().getDefinition()).getDocumentElement());
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if (this.definition != null && this.definition.getFields() != null && !this.definition.getFields().isEmpty() && this.properties != null) {
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this.definition.getFields().forEach(item -> {
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Optional<Map<String, Object>> fieldOptional = ((List<Map<String, Object>>) this.properties.get("fields")).stream().filter(field -> field.get("id").equals(item.getId().toString())).findFirst();
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fieldOptional.ifPresent(stringObjectMap -> item.setValue(stringObjectMap.get("value")));
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});
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}
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if (entity.getUsers() != null && entity.getUsers().stream().anyMatch(userDMP -> userDMP.getRole().equals(UserDMP.UserDMPRoles.OWNER.getValue())))
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this.creator.fromDataModel(entity.getUsers().stream().filter(user -> user.getRole().equals(UserDMP.UserDMPRoles.OWNER.getValue())).findFirst().get().getUser());
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if (entity.getAssociatedDmps() != null && !entity.getAssociatedDmps().isEmpty()) {
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this.profiles = new LinkedList<>();
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for (DatasetProfile datasetProfile : entity.getAssociatedDmps()) {
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AssociatedProfile associatedProfile = new AssociatedProfile().fromData(datasetProfile);
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this.profiles.add(associatedProfile);
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}
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}
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this.modified = entity.getModified();
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this.created = entity.getCreated();
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this.description = entity.getDescription();
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this.status = entity.getStatus();
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this.associatedUsers = entity.getUsers() != null ? entity.getUsers().stream().map(item -> new UserListingModel().fromDataModel(item.getUser())).collect(Collectors.toList()) : new ArrayList<>();
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this.users = entity.getUsers() != null ? entity.getUsers().stream().map(item -> new UserInfoListingModel().fromDataModel(item)).collect(Collectors.toList()) : new ArrayList<>();
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this.doi = entity.getDoi();
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this.grant.fromDataModel(entity.getGrant());
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if (entity.getProject() != null) {
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this.project = new Project();
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this.project = new Project().fromDataModel(entity.getProject());
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}
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if (entity.getGrant().getFunder() != null) {
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this.funder = new Funder();
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this.funder.fromDataModel(entity.getGrant().getFunder());
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}
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this.isPublic = entity.isPublic();
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this.extraProperties = entity.getExtraProperties() != null ? objectMapper.readValue(entity.getExtraProperties(), LinkedHashMap.class) : null;
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} catch (JsonProcessingException e) {
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logger.error(e.getLocalizedMessage(), e);
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}
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return this;
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}
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@Override
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public String getHint() {
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return "fullyDetailed";
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}
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}
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