331 lines
16 KiB
Java
331 lines
16 KiB
Java
package eu.eudat.service.dmp;
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import com.fasterxml.jackson.core.JsonProcessingException;
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import eu.eudat.authorization.AuthorizationFlags;
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import eu.eudat.authorization.Permission;
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import eu.eudat.commons.JsonHandlingService;
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import eu.eudat.commons.XmlHandlingService;
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import eu.eudat.commons.enums.IsActive;
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import eu.eudat.commons.types.reference.DefinitionEntity;
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import eu.eudat.commons.types.reference.FieldEntity;
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import eu.eudat.convention.ConventionService;
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import eu.eudat.data.*;
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import eu.eudat.errorcode.ErrorThesaurusProperties;
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import eu.eudat.event.DmpTouchedEvent;
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import eu.eudat.event.EventBroker;
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import eu.eudat.model.Dmp;
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import eu.eudat.model.Reference;
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import eu.eudat.model.builder.DmpBuilder;
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import eu.eudat.model.deleter.DmpDeleter;
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import eu.eudat.model.deleter.DmpDescriptionTemplateDeleter;
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import eu.eudat.model.deleter.DmpReferenceDeleter;
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import eu.eudat.model.persist.DmpDescriptionTemplatePersist;
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import eu.eudat.model.persist.DmpPersist;
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import eu.eudat.model.persist.DmpReferencePersist;
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import eu.eudat.model.persist.ReferencePersist;
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import eu.eudat.model.persist.referencedefinition.DefinitionPersist;
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import eu.eudat.model.persist.referencedefinition.FieldPersist;
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import eu.eudat.query.*;
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import gr.cite.commons.web.authz.service.AuthorizationService;
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import gr.cite.tools.data.builder.BuilderFactory;
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import gr.cite.tools.data.deleter.DeleterFactory;
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import gr.cite.tools.data.query.Ordering;
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import gr.cite.tools.data.query.QueryFactory;
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import gr.cite.tools.exception.MyApplicationException;
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import gr.cite.tools.exception.MyForbiddenException;
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import gr.cite.tools.exception.MyNotFoundException;
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import gr.cite.tools.exception.MyValidationException;
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import gr.cite.tools.fieldset.BaseFieldSet;
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import gr.cite.tools.fieldset.FieldSet;
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import gr.cite.tools.logging.LoggerService;
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import gr.cite.tools.logging.MapLogEntry;
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import jakarta.persistence.EntityManager;
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import jakarta.xml.bind.JAXBException;
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import org.jetbrains.annotations.NotNull;
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import org.slf4j.LoggerFactory;
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import org.springframework.beans.factory.annotation.Autowired;
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import org.springframework.context.MessageSource;
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import org.springframework.context.i18n.LocaleContextHolder;
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import org.springframework.stereotype.Service;
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import javax.management.InvalidApplicationException;
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import javax.xml.parsers.ParserConfigurationException;
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import javax.xml.transform.TransformerException;
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import java.time.Instant;
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import java.util.ArrayList;
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import java.util.List;
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import java.util.Map;
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import java.util.UUID;
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import java.util.stream.Collectors;
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@Service
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public class DmpServiceImpl implements DmpService {
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private static final LoggerService logger = new LoggerService(LoggerFactory.getLogger(DmpServiceImpl.class));
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private final EntityManager entityManager;
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private final AuthorizationService authorizationService;
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private final DeleterFactory deleterFactory;
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private final BuilderFactory builderFactory;
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private final QueryFactory queryFactory;
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private final ConventionService conventionService;
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private final ErrorThesaurusProperties errors;
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private final MessageSource messageSource;
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private final XmlHandlingService xmlHandlingService;
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private final JsonHandlingService jsonHandlingService;
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private final EventBroker eventBroker;
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@Autowired
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public DmpServiceImpl(
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EntityManager entityManager,
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AuthorizationService authorizationService,
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DeleterFactory deleterFactory,
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BuilderFactory builderFactory,
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QueryFactory queryFactory, ConventionService conventionService,
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ErrorThesaurusProperties errors,
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MessageSource messageSource,
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XmlHandlingService xmlHandlingService, JsonHandlingService jsonHandlingService,
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EventBroker eventBroker) {
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this.entityManager = entityManager;
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this.authorizationService = authorizationService;
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this.deleterFactory = deleterFactory;
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this.builderFactory = builderFactory;
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this.queryFactory = queryFactory;
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this.conventionService = conventionService;
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this.errors = errors;
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this.messageSource = messageSource;
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this.xmlHandlingService = xmlHandlingService;
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this.jsonHandlingService = jsonHandlingService;
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this.eventBroker = eventBroker;
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}
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public Dmp persist(DmpPersist model, FieldSet fields) throws MyForbiddenException, MyValidationException, MyApplicationException, MyNotFoundException, InvalidApplicationException, JsonProcessingException {
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logger.debug(new MapLogEntry("persisting data dmp").And("model", model).And("fields", fields));
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this.authorizationService.authorizeForce(Permission.EditDmp);
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DmpEntity data = this.patchAndSave(model);
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this.patchAndSaveReferences(model.getReferences(), data.getId());
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this.patchAndSaveTemplates(model.getDescriptionTemplates(), data.getId());
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this.eventBroker.emit(new DmpTouchedEvent(data.getId()));
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return this.builderFactory.builder(DmpBuilder.class).authorize(AuthorizationFlags.OwnerOrPermission).build(BaseFieldSet.build(fields, Dmp._id, Dmp._hash), data);
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}
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public void deleteAndSave(UUID id) throws MyForbiddenException, InvalidApplicationException {
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logger.debug("deleting dmp: {}", id);
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this.authorizationService.authorizeForce(Permission.DeleteDmp);
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this.deleterFactory.deleter(DmpDeleter.class).deleteAndSaveByIds(List.of(id));
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}
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@Override
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public Dmp createNewVersion(DmpPersist model, FieldSet fields) throws MyForbiddenException, MyValidationException, MyApplicationException, MyNotFoundException, InvalidApplicationException, JAXBException, ParserConfigurationException, JsonProcessingException, TransformerException {
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logger.debug(new MapLogEntry("persisting data dmp (new version)").And("model", model).And("fields", fields));
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this.authorizationService.authorizeForce(Permission.CreateNewVersionDmp);
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DmpEntity oldDmpEntity = this.entityManager.find(DmpEntity.class, model.getId());
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if (oldDmpEntity == null) throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{model.getId(), Dmp.class.getSimpleName()}, LocaleContextHolder.getLocale()));
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if (!this.conventionService.hashValue(oldDmpEntity.getUpdatedAt()).equals(model.getHash())) throw new MyValidationException(this.errors.getHashConflict().getCode(), this.errors.getHashConflict().getMessage());
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DmpQuery latestVersionDmpEntityQuery = this.queryFactory.query(DmpQuery.class).groupIds(oldDmpEntity.getGroupId());
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latestVersionDmpEntityQuery.setOrder(new Ordering().addDescending(Dmp._version));
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DmpEntity latestVersionDmpEntity = latestVersionDmpEntityQuery.first();
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if (!latestVersionDmpEntity.getVersion().equals(oldDmpEntity.getVersion())){
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throw new MyValidationException(this.errors.getDmpNewVersionConflict().getCode(), this.errors.getDmpNewVersionConflict().getMessage());
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}
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DmpEntity data = new DmpEntity();
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data.setId(UUID.randomUUID());
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data.setIsActive(IsActive.Active);
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data.setCreatedAt(Instant.now());
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data.setUpdatedAt(Instant.now());
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data.setGroupId(oldDmpEntity.getGroupId());
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data.setVersion((short)(oldDmpEntity.getVersion() + 1));
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data.setDescription(model.getDescription());
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data.setLabel(model.getLabel());
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data.setLanguage(model.getLanguage());
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data.setStatus(model.getStatus());
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data.setProperties(this.jsonHandlingService.toJsonSafe(model.getProperties()));
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this.entityManager.persist(data);
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this.entityManager.flush();
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return this.builderFactory.builder(DmpBuilder.class).authorize(AuthorizationFlags.OwnerOrPermission).build(BaseFieldSet.build(fields, Dmp._id), data);
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}
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private DmpEntity patchAndSave(DmpPersist model) throws JsonProcessingException {
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Boolean isUpdate = this.conventionService.isValidGuid(model.getId());
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DmpEntity data;
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if (isUpdate) {
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data = this.entityManager.find(DmpEntity.class, model.getId());
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if (data == null) throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{model.getId(), Dmp.class.getSimpleName()}, LocaleContextHolder.getLocale()));
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if (!this.conventionService.hashValue(data.getUpdatedAt()).equals(model.getHash())) throw new MyValidationException(this.errors.getHashConflict().getCode(), this.errors.getHashConflict().getMessage());
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} else {
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data = new DmpEntity();
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data.setId(UUID.randomUUID());
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data.setGroupId(UUID.randomUUID());
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data.setVersion((short) 1);
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data.setIsActive(IsActive.Active);
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data.setCreatedAt(Instant.now());
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}
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data.setLabel(model.getLabel());
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data.setStatus(model.getStatus());
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data.setProperties(this.jsonHandlingService.toJson(model.getProperties()));
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data.setDescription(model.getDescription());
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data.setUpdatedAt(Instant.now());
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if (isUpdate)
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this.entityManager.merge(data);
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else
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this.entityManager.persist(data);
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this.entityManager.flush();
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return data;
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}
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private void patchAndSaveReferences(List<DmpReferencePersist> models, UUID dmpId) throws InvalidApplicationException {
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if (models == null || models.isEmpty())
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return;
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List<DmpReferenceEntity> references = this.queryFactory.query(DmpReferenceQuery.class).dmpIds(dmpId).collect();
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Map<UUID, List<DmpReferenceEntity>> referencesLookup = this.conventionService.toDictionaryOfList(references, DmpReferenceEntity::getDmpId);
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List<ReferenceEntity> existingReferences;
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if (referencesLookup.containsKey(dmpId))
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existingReferences = this.queryFactory.query(ReferenceQuery.class).ids(referencesLookup.get(dmpId).stream().map(DmpReferenceEntity::getId).toList()).collect();
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else
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existingReferences = new ArrayList<>();
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List<UUID> updatedReferencesIds = models.stream().map(x -> x.getReference().getId()).filter(this.conventionService::isValidGuid).distinct().toList();
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List<ReferenceEntity> toDelete = existingReferences.stream().filter(x -> !updatedReferencesIds.contains(x.getId())).toList();
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List<DmpReferenceEntity> dmpReferenceRecordsToDelete = this.queryFactory.query(DmpReferenceQuery.class).referenceIds(toDelete.stream().map(ReferenceEntity::getId).toList()).collect();
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this.deleterFactory.deleter(DmpReferenceDeleter.class).delete(dmpReferenceRecordsToDelete);
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Map<UUID, ReferenceEntity> existingReferencesLookup = existingReferences.stream().collect(Collectors.toMap(ReferenceEntity::getId, x -> x));
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for (DmpReferencePersist model : models) {
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ReferencePersist referenceModel = model.getReference();
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Boolean isUpdate = this.conventionService.isValidGuid(referenceModel.getId());
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ReferenceEntity data;
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if (isUpdate) {
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if (!existingReferencesLookup.containsKey(referenceModel.getId()))
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throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{referenceModel.getId(), Reference.class.getSimpleName()}, LocaleContextHolder.getLocale()));
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data = existingReferencesLookup.get(referenceModel.getId());
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if (data == null)
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throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{referenceModel.getId(), Reference.class.getSimpleName()}, LocaleContextHolder.getLocale()));
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if (!this.conventionService.hashValue(data.getUpdatedAt()).equals(referenceModel.getHash()))
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throw new MyValidationException(this.errors.getHashConflict().getCode(), this.errors.getHashConflict().getMessage());
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} else {
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data = new ReferenceEntity();
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data.setId(UUID.randomUUID());
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data.setIsActive(IsActive.Active);
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data.setCreatedAt(Instant.now());
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DmpReferenceEntity dmpReference = new DmpReferenceEntity();
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dmpReference.setReferenceId(data.getId());
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dmpReference.setDmpId(dmpId);
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dmpReference.setCreatedAt(Instant.now());
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dmpReference.setUpdatedAt(Instant.now());
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dmpReference.setIsActive(IsActive.Active);
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dmpReference.setData(model.getData());
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this.entityManager.persist(dmpReference);
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}
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data.setDefinition(this.xmlHandlingService.toXmlSafe(this.buildDefinitionEntity(referenceModel.getDefinition())));
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data.setUpdatedAt(Instant.now());
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data.setReference(referenceModel.getReference());
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data.setAbbreviation(referenceModel.getAbbreviation());
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data.setSource(referenceModel.getSource());
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data.setSourceType(referenceModel.getSourceType());
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if (isUpdate)
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this.entityManager.merge(data);
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else
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this.entityManager.persist(data);
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}
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this.entityManager.flush();
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}
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private void patchAndSaveTemplates(List<DmpDescriptionTemplatePersist> models, UUID dmpId) throws InvalidApplicationException {
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if (models == null || models.isEmpty())
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return;
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List<DmpDescriptionTemplateEntity> templates = this.queryFactory.query(DmpDescriptionTemplateQuery.class).dmpIds(dmpId).collect();
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Map<UUID, List<DmpDescriptionTemplateEntity>> templatesLookup = this.conventionService.toDictionaryOfList(templates, DmpDescriptionTemplateEntity::getDmpId);
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List<DescriptionTemplateEntity> existingTemplates;
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if (templatesLookup.containsKey(dmpId))
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existingTemplates = this.queryFactory.query(DescriptionTemplateQuery.class).ids(templatesLookup.get(dmpId).stream().map(DmpDescriptionTemplateEntity::getId).toList()).collect();
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else existingTemplates = new ArrayList<>();
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List<UUID> updatedTemplatesIds = models.stream().map(DmpDescriptionTemplatePersist::getDescriptionTemplate).filter(this.conventionService::isValidGuid).distinct().toList();
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List<DescriptionTemplateEntity> toDelete = existingTemplates.stream().filter(x -> !updatedTemplatesIds.contains(x.getId())).toList();
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List<DmpDescriptionTemplateEntity> dmpDescriptionTemplateRecordsToDelete = this.queryFactory.query(DmpDescriptionTemplateQuery.class).descriptionTemplateIds(toDelete.stream().map(DescriptionTemplateEntity::getId).toList()).collect();
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this.deleterFactory.deleter(DmpDescriptionTemplateDeleter.class).delete(dmpDescriptionTemplateRecordsToDelete);
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for (DmpDescriptionTemplatePersist model : models) {
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boolean shouldAdd = existingTemplates.stream().noneMatch(x -> x.getId().equals(model.getDescriptionTemplate()));
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if (shouldAdd) {
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DmpDescriptionTemplateEntity dmpTemplate = new DmpDescriptionTemplateEntity();
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dmpTemplate.setDescriptionTemplateId(model.getDescriptionTemplate());
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dmpTemplate.setDmpId(dmpId);
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dmpTemplate.setSectionId(model.getSectionId());
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dmpTemplate.setCreatedAt(Instant.now());
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dmpTemplate.setUpdatedAt(Instant.now());
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dmpTemplate.setIsActive(IsActive.Active);
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this.entityManager.persist(dmpTemplate);
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}
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}
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this.entityManager.flush();
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}
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private @NotNull DefinitionEntity buildDefinitionEntity(DefinitionPersist persist){
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DefinitionEntity data = new DefinitionEntity();
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if (persist == null) return data;
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if (!this.conventionService.isListNullOrEmpty(persist.getFields())){
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data.setFields(new ArrayList<>());
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for (FieldPersist fieldPersist: persist.getFields()) {
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data.getFields().add(this.buildFieldEntity(fieldPersist));
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}
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}
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return data;
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}
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private @NotNull FieldEntity buildFieldEntity(FieldPersist persist){
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FieldEntity data = new FieldEntity();
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if (persist == null) return data;
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data.setCode(persist.getCode());
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data.setDataType(persist.getDataType());
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data.setCode(persist.getCode());
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return data;
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}
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}
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