468 lines
49 KiB
Java
468 lines
49 KiB
Java
package eu.eudat.service.transformer;
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import eu.eudat.authorization.AuthorizationFlags;
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import eu.eudat.authorization.Permission;
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import eu.eudat.cache.transformer.FileTransformerConfigurationCache;
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import eu.eudat.commons.JsonHandlingService;
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import eu.eudat.commons.enums.DmpUserRole;
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import eu.eudat.configurations.transformer.TransformerProperties;
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import eu.eudat.convention.ConventionService;
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import eu.eudat.file.transformer.model.DescriptionFileTransformerModel;
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import eu.eudat.file.transformer.model.DmpFileTransformerModel;
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import eu.eudat.file.transformer.model.ExtraPropertiesModel;
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import eu.eudat.file.transformer.model.descriptiontemplatedefinition.Field;
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import eu.eudat.file.transformer.model.descriptiontemplatedefinition.Rule;
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import eu.eudat.file.transformer.model.file.FileFormat;
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import eu.eudat.model.*;
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import eu.eudat.model.builder.DescriptionBuilder;
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import eu.eudat.model.builder.DmpBuilder;
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import eu.eudat.model.descriptionproperties.PropertyDefinition;
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import eu.eudat.model.descriptiontemplatedefinition.Definition;
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import eu.eudat.model.descriptiontemplatedefinition.Multiplicity;
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import eu.eudat.model.descriptiontemplatedefinition.Page;
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import eu.eudat.model.descriptiontemplatedefinition.Section;
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import eu.eudat.model.descriptiontemplatedefinition.fielddata.AutoCompleteData;
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import eu.eudat.model.descriptiontemplatedefinition.fielddata.AutoCompleteSingleData;
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import eu.eudat.model.descriptiontemplatedefinition.fielddata.BaseFieldData;
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import eu.eudat.model.descriptiontemplatedefinition.fielddata.ComboBoxOption;
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import eu.eudat.model.dmpblueprintdefinition.ExtraField;
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import eu.eudat.model.dmpblueprintdefinition.SystemField;
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import eu.eudat.model.file.FileEnvelope;
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import eu.eudat.model.file.TransformerCacheModel;
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import eu.eudat.query.DescriptionQuery;
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import eu.eudat.query.DmpQuery;
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import eu.eudat.query.EntityDoiQuery;
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import eu.eudat.repository.TransformerRepository;
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import eu.eudat.service.entitydoi.EntityDoiService;
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import gr.cite.commons.web.authz.service.AuthorizationService;
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import gr.cite.commons.web.oidc.filter.webflux.TokenExchangeCacheService;
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import gr.cite.commons.web.oidc.filter.webflux.TokenExchangeFilterFunction;
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import gr.cite.commons.web.oidc.filter.webflux.TokenExchangeModel;
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import gr.cite.tools.data.builder.BuilderFactory;
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import gr.cite.tools.data.query.QueryFactory;
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import gr.cite.tools.fieldset.BaseFieldSet;
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import gr.cite.tools.fieldset.FieldSet;
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import jakarta.persistence.EntityManager;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import org.springframework.beans.factory.annotation.Autowired;
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import org.springframework.context.ApplicationContext;
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import org.springframework.core.env.Environment;
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import org.springframework.stereotype.Service;
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import org.springframework.web.reactive.function.client.ExchangeFilterFunction;
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import org.springframework.web.reactive.function.client.WebClient;
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import reactor.core.publisher.Mono;
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import javax.management.InvalidApplicationException;
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import java.io.File;
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import java.io.FileOutputStream;
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import java.io.IOException;
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import java.net.URI;
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import java.nio.file.Path;
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import java.util.*;
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@Service
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public class FileTransformerService {
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private static final Logger logger = LoggerFactory.getLogger(FileTransformerService.class);
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private final TransformerProperties transformerProperties;
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private final Map<String, TransformerRepository> clients;
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private final TokenExchangeCacheService tokenExchangeCacheService;
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private final FileTransformerConfigurationCache fileTransformerConfigurationCache;
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private final AuthorizationService authorizationService;
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private final ConventionService conventionService;
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private final Environment environment;
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private final WebClient.Builder webClientBuilder;
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private final EntityDoiService doiService;
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private final ApplicationContext applicationContext;
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private final JsonHandlingService jsonHandlingService;
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private final QueryFactory queryFactory;
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private final BuilderFactory builderFactory;
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@Autowired
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public FileTransformerService(TransformerProperties transformerProperties, TokenExchangeCacheService tokenExchangeCacheService, FileTransformerConfigurationCache fileTransformerConfigurationCache, WebClient.Builder builder, EntityManager entityManager, AuthorizationService authorizationService, ConventionService conventionService, Environment environment, DmpQuery dmpQuery, EntityDoiQuery doiQuery, EntityDoiService doiService, ApplicationContext applicationContext, JsonHandlingService jsonHandlingService, QueryFactory queryFactory, BuilderFactory builderFactory) {
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this.transformerProperties = transformerProperties;
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this.tokenExchangeCacheService = tokenExchangeCacheService;
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this.fileTransformerConfigurationCache = fileTransformerConfigurationCache;
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this.authorizationService = authorizationService;
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this.conventionService = conventionService;
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this.environment = environment;
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this.webClientBuilder = builder;
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this.doiService = doiService;
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this.applicationContext = applicationContext;
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this.jsonHandlingService = jsonHandlingService;
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this.queryFactory = queryFactory;
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this.builderFactory = builderFactory;
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this.clients = new HashMap<>();
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}
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private TransformerRepository getRepository(String repoId) {
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if (this.clients.containsKey(repoId)) return this.clients.get(repoId);
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//GK: It's register time
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TransformerProperties.TransformerSource source = transformerProperties.getSources().stream().filter(depositSource -> depositSource.getCodes().contains(repoId)).findFirst().orElse(null);
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if (source != null) {
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String host = URI.create(source.getUrl()).getHost();
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TokenExchangeModel tokenExchangeModel = new TokenExchangeModel(host + "_" + source.getClientId(), source.getIssuerUrl(), source.getClientId(), source.getClientSecret(), source.getScope());
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TokenExchangeFilterFunction tokenExchangeFilterFunction = new TokenExchangeFilterFunction(this.tokenExchangeCacheService, tokenExchangeModel);
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TransformerRepository repository = new TransformerRepository(webClientBuilder.baseUrl(source.getUrl() + "/api/file").filters(exchangeFilterFunctions -> {
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exchangeFilterFunctions.add(tokenExchangeFilterFunction);
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exchangeFilterFunctions.add(logRequest());
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}).build());
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source.getCodes().forEach(code -> this.clients.put(code, repository));
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return repository;
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}
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return null;
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}
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public List<FileFormat> getAvailableConfigurations() {
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TransformerCacheModel configs = fileTransformerConfigurationCache.lookup("base");
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if (configs == null) {
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List<FileFormat> configurations = new ArrayList<>();
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//GK: So much for lazy loading
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List<TransformerRepository> repositories = transformerProperties.getSources().stream().map(depositSource -> getRepository(depositSource.getCodes().get(0))).toList();
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repositories.forEach((client) -> {
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List<FileFormat> repositoryConfigs = client.getSupportedFileFormats();
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if (repositoryConfigs != null && !repositoryConfigs.isEmpty()) {
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configurations.addAll(repositoryConfigs);
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}
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});
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configs = new TransformerCacheModel(configurations);
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this.fileTransformerConfigurationCache.put("base", configs);
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}
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return configs.getFormats();
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}
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public FileEnvelope exportDmp(UUID dmpId, String format) throws InvalidApplicationException, IOException {
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this.authorizationService.authorize(Permission.EditDmp);
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//GK: Why it is in that service, and why it's not static?
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this.conventionService.isValidGuid(dmpId);
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//GK: First get the right client
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TransformerRepository repository = getRepository(format);
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//GK: Second get the Target Data Management Plan
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FieldSet fieldSet = new BaseFieldSet(Dmp._id,
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Dmp._accessType,
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Dmp._dmpReferences,
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Dmp._blueprint,
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Dmp._dmpUsers,
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Dmp._createdAt,
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Dmp._creator,
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Dmp._description,
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Dmp._descriptions,
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Dmp._entityDois,
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Dmp._finalizedAt,
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Dmp._groupId,
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Dmp._isActive,
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Dmp._label,
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Dmp._properties,
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Dmp._language,
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Dmp._publicAfter,
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Dmp._status,
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Dmp._updatedAt,
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Dmp._version,
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Dmp._versionStatus,
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Dmp._dmpReferences + "." + DmpReference._id,
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Dmp._dmpReferences + "." + DmpReference._data,
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Dmp._dmpReferences + "." + DmpReference._reference + "." + Reference._id,
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Dmp._dmpReferences + "." + DmpReference._reference + "." + Reference._description,
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Dmp._dmpReferences + "." + DmpReference._reference + "." + Reference._abbreviation,
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Dmp._dmpReferences + "." + DmpReference._reference + "." + Reference._definition,
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Dmp._dmpReferences + "." + DmpReference._reference + "." + Reference._label,
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Dmp._dmpReferences + "." + DmpReference._reference + "." + Reference._source,
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Dmp._dmpReferences + "." + DmpReference._reference + "." + Reference._sourceType,
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Dmp._dmpReferences + "." + DmpReference._reference + "." + Reference._type,
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Dmp._dmpReferences + "." + DmpReference._reference + "." + Reference._isActive,
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Dmp._dmpReferences + "." + DmpReference._reference + "." + Reference._reference,
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Dmp._creator + "." + User._id,
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Dmp._creator + "." + User._additionalInfo + "." + UserAdditionalInfo._avatarUrl,
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Dmp._creator + "." + User._additionalInfo + "." + UserAdditionalInfo._culture,
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Dmp._creator + "." + User._additionalInfo + "." + UserAdditionalInfo._language,
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Dmp._creator + "." + User._additionalInfo + "." + UserAdditionalInfo._timezone,
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Dmp._creator + "." + User._additionalInfo + "." + UserAdditionalInfo._roleOrganization,
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Dmp._creator + "." + User._additionalInfo + "." + UserAdditionalInfo._organization,
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Dmp._creator + "." + User._createdAt,
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Dmp._creator + "." + User._isActive,
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Dmp._creator + "." + User._name,
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Dmp._creator + "." + User._roles + "." + UserRole._id,
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Dmp._creator + "." + User._roles + "." + UserRole._role,
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Dmp._descriptions + "." + Description._id,
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Dmp._descriptions + "." + Description._label,
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Dmp._descriptions + "." + Description._properties,
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Dmp._descriptions + "." + Description._description,
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Dmp._descriptions + "." + Description._status,
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Dmp._descriptions + "." + Description._descriptionTags,
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Dmp._descriptions + "." + Description._descriptionTemplate,
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Dmp._descriptions + "." + Description._descriptionReferences,
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Dmp._descriptions + "." + Description._isActive,
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Dmp._descriptions + "." + Description._properties + "." + PropertyDefinition._fields + "." + eu.eudat.model.descriptionproperties.Field._key,
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Dmp._descriptions + "." + Description._properties + "." + PropertyDefinition._fields + "." + eu.eudat.model.descriptionproperties.Field._value,
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Dmp._descriptions + "." + Description._descriptionReferences + "." + DescriptionReference._id,
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Dmp._descriptions + "." + Description._descriptionReferences + "." + DescriptionReference._reference,
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Dmp._descriptions + "." + Description._descriptionReferences + "." + DescriptionReference._reference + "." + Reference._id,
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Dmp._descriptions + "." + Description._descriptionReferences + "." + DescriptionReference._reference + "." + Reference._description,
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Dmp._descriptions + "." + Description._descriptionReferences + "." + DescriptionReference._reference + "." + Reference._abbreviation,
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Dmp._descriptions + "." + Description._descriptionReferences + "." + DescriptionReference._reference + "." + Reference._definition,
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Dmp._descriptions + "." + Description._descriptionReferences + "." + DescriptionReference._reference + "." + Reference._label,
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Dmp._descriptions + "." + Description._descriptionReferences + "." + DescriptionReference._reference + "." + Reference._source,
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Dmp._descriptions + "." + Description._descriptionReferences + "." + DescriptionReference._reference + "." + Reference._sourceType,
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Dmp._descriptions + "." + Description._descriptionReferences + "." + DescriptionReference._reference + "." + Reference._type,
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Dmp._descriptions + "." + Description._descriptionReferences + "." + DescriptionReference._reference + "." + Reference._isActive,
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Dmp._descriptions + "." + Description._descriptionReferences + "." + DescriptionReference._reference + "." + Reference._reference,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._id,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._description,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._label,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._language,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._status,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._isActive,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._groupId,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._type,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._version,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._id,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._description,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._sections,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._title,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._page,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._ordinal,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._defaultVisibility,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._extendedDescription,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._multiplicity + "." + Multiplicity._max,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._multiplicity + "." + Multiplicity._min,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._multiplicity + "." + Multiplicity._placeholder,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._multiplicity + "." + Multiplicity._tableView,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._numbering,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._id,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._title,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._description,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._ordinal,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._numbering,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._multiplicity + "." + Multiplicity._max,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._multiplicity + "." + Multiplicity._min,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._multiplicity + "." + Multiplicity._tableView,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._multiplicity + "." + Multiplicity._placeholder,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._hasCommentField,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._additionalInformation,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._extendedDescription,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._fields + "." + Field._id,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._fields + "." + Field._ordinal,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._fields + "." + Field._numbering,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._fields + "." + Field._data + "." + BaseFieldData._label,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._fields + "." + Field._data + "." + BaseFieldData._fieldType,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._fields + "." + Field._data + "." + AutoCompleteData._multiAutoComplete,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._fields + "." + Field._data + "." + AutoCompleteData._autoCompleteSingleDataList + "." + AutoCompleteSingleData._autoCompleteOptions + "." + ComboBoxOption._label,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._fields + "." + Field._data + "." + AutoCompleteData._autoCompleteSingleDataList + "." + AutoCompleteSingleData._autoCompleteOptions + "." + ComboBoxOption._uri,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._fields + "." + Field._data + "." + AutoCompleteData._autoCompleteSingleDataList + "." + AutoCompleteSingleData._autoCompleteOptions + "." + ComboBoxOption._source,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._fields + "." + Field._data + "." + AutoCompleteData._autoCompleteSingleDataList + "." + AutoCompleteSingleData._autoCompleteOptions + "." + ComboBoxOption._value,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._fields + "." + Field._defaultValue,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._fields + "." + Field._includeInExport,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._fields + "." + Field._schematics,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._fields + "." + Field._validations,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._fields + "." + Field._visibilityRules + "." + Rule._target,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._fields + "." + Field._visibilityRules + "." + Rule._value,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._pages + "." + Page._id,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._pages + "." + Page._ordinal,
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Dmp._descriptions + "." + Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._pages + "." + Page._title,
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Dmp._descriptions + "." + Description._descriptionTags + "." + DescriptionTag._id,
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Dmp._descriptions + "." + Description._descriptionTags + "." + DescriptionTag._tag + "." + Tag._id,
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Dmp._descriptions + "." + Description._descriptionTags + "." + DescriptionTag._tag + "." + Tag._label,
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Dmp._descriptions + "." + Description._dmpDescriptionTemplate + "." + DmpDescriptionTemplate._sectionId,
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Dmp._blueprint + "." + DmpBlueprint._id,
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Dmp._blueprint + "." + DmpBlueprint._label,
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Dmp._blueprint + "." + DmpBlueprint._definition,
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Dmp._blueprint + "." + DmpBlueprint._definition + "." + eu.eudat.model.dmpblueprintdefinition.Definition._sections + "." + eu.eudat.model.dmpblueprintdefinition.Section._id,
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Dmp._blueprint + "." + DmpBlueprint._definition + "." + eu.eudat.model.dmpblueprintdefinition.Definition._sections + "." + eu.eudat.model.dmpblueprintdefinition.Section._description,
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Dmp._blueprint + "." + DmpBlueprint._definition + "." + eu.eudat.model.dmpblueprintdefinition.Definition._sections + "." + eu.eudat.model.dmpblueprintdefinition.Section._label,
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Dmp._blueprint + "." + DmpBlueprint._definition + "." + eu.eudat.model.dmpblueprintdefinition.Definition._sections + "." + eu.eudat.model.dmpblueprintdefinition.Section._ordinal,
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Dmp._blueprint + "." + DmpBlueprint._definition + "." + eu.eudat.model.dmpblueprintdefinition.Definition._sections + "." + eu.eudat.model.dmpblueprintdefinition.Section._fields + "." + eu.eudat.model.dmpblueprintdefinition.Field._id,
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Dmp._blueprint + "." + DmpBlueprint._definition + "." + eu.eudat.model.dmpblueprintdefinition.Definition._sections + "." + eu.eudat.model.dmpblueprintdefinition.Section._fields + "." + eu.eudat.model.dmpblueprintdefinition.Field._description,
|
|
Dmp._blueprint + "." + DmpBlueprint._definition + "." + eu.eudat.model.dmpblueprintdefinition.Definition._sections + "." + eu.eudat.model.dmpblueprintdefinition.Section._fields + "." + eu.eudat.model.dmpblueprintdefinition.Field._ordinal,
|
|
Dmp._blueprint + "." + DmpBlueprint._definition + "." + eu.eudat.model.dmpblueprintdefinition.Definition._sections + "." + eu.eudat.model.dmpblueprintdefinition.Section._fields + "." + eu.eudat.model.dmpblueprintdefinition.Field._label,
|
|
Dmp._blueprint + "." + DmpBlueprint._definition + "." + eu.eudat.model.dmpblueprintdefinition.Definition._sections + "." + eu.eudat.model.dmpblueprintdefinition.Section._fields + "." + eu.eudat.model.dmpblueprintdefinition.Field._placeholder,
|
|
Dmp._blueprint + "." + DmpBlueprint._definition + "." + eu.eudat.model.dmpblueprintdefinition.Definition._sections + "." + eu.eudat.model.dmpblueprintdefinition.Section._fields + "." + eu.eudat.model.dmpblueprintdefinition.Field._category,
|
|
Dmp._blueprint + "." + DmpBlueprint._definition + "." + eu.eudat.model.dmpblueprintdefinition.Definition._sections + "." + eu.eudat.model.dmpblueprintdefinition.Section._fields + "." + eu.eudat.model.dmpblueprintdefinition.Field._required,
|
|
Dmp._blueprint + "." + DmpBlueprint._definition + "." + eu.eudat.model.dmpblueprintdefinition.Definition._sections + "." + eu.eudat.model.dmpblueprintdefinition.Section._fields + "." + SystemField._systemFieldType,
|
|
Dmp._blueprint + "." + DmpBlueprint._definition + "." + eu.eudat.model.dmpblueprintdefinition.Definition._sections + "." + eu.eudat.model.dmpblueprintdefinition.Section._fields + "." + ExtraField._dataType,
|
|
Dmp._blueprint + "." + DmpBlueprint._definition + "." + eu.eudat.model.dmpblueprintdefinition.Definition._sections + "." + eu.eudat.model.dmpblueprintdefinition.Section._descriptionTemplates + "." + eu.eudat.model.dmpblueprintdefinition.DescriptionTemplate._id,
|
|
Dmp._blueprint + "." + DmpBlueprint._definition + "." + eu.eudat.model.dmpblueprintdefinition.Definition._sections + "." + eu.eudat.model.dmpblueprintdefinition.Section._descriptionTemplates + "." + eu.eudat.model.dmpblueprintdefinition.DescriptionTemplate._label,
|
|
Dmp._blueprint + "." + DmpBlueprint._definition + "." + eu.eudat.model.dmpblueprintdefinition.Definition._sections + "." + eu.eudat.model.dmpblueprintdefinition.Section._descriptionTemplates + "." + eu.eudat.model.dmpblueprintdefinition.DescriptionTemplate._descriptionTemplateId,
|
|
Dmp._blueprint + "." + DmpBlueprint._definition + "." + eu.eudat.model.dmpblueprintdefinition.Definition._sections + "." + eu.eudat.model.dmpblueprintdefinition.Section._descriptionTemplates + "." + eu.eudat.model.dmpblueprintdefinition.DescriptionTemplate._maxMultiplicity,
|
|
Dmp._blueprint + "." + DmpBlueprint._definition + "." + eu.eudat.model.dmpblueprintdefinition.Definition._sections + "." + eu.eudat.model.dmpblueprintdefinition.Section._descriptionTemplates + "." + eu.eudat.model.dmpblueprintdefinition.DescriptionTemplate._minMultiplicity,
|
|
Dmp._blueprint + "." + DmpBlueprint._definition + "." + eu.eudat.model.dmpblueprintdefinition.Definition._sections + "." + eu.eudat.model.dmpblueprintdefinition.Section._hasTemplates,
|
|
Dmp._entityDois + "." + EntityDoi._doi,
|
|
Dmp._entityDois + "." + EntityDoi._id,
|
|
Dmp._entityDois + "." + EntityDoi._entityType,
|
|
Dmp._dmpUsers + "." + DmpUser._id,
|
|
Dmp._dmpUsers + "." + DmpUser._user + "." + User._id,
|
|
Dmp._dmpUsers + "." + DmpUser._user + "." + User._additionalInfo,
|
|
Dmp._dmpUsers + "." + DmpUser._user + "." + User._createdAt,
|
|
Dmp._dmpUsers + "." + DmpUser._user + "." + User._isActive,
|
|
Dmp._dmpUsers + "." + DmpUser._user + "." + User._name,
|
|
Dmp._dmpUsers + "." + DmpUser._user + "." + User._roles + "." + UserRole._id,
|
|
Dmp._dmpUsers + "." + DmpUser._user + "." + User._roles + "." + UserRole._role,
|
|
Dmp._dmpUsers + "." + DmpUser._role
|
|
);
|
|
DmpQuery query = this.queryFactory.query(DmpQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).ids(dmpId);
|
|
Dmp model = this.builderFactory.builder(DmpBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(fieldSet, query.firstAs(fieldSet));
|
|
DmpFileTransformerModel dmpFileTransformerModel = this.jsonHandlingService.fromJsonSafe(DmpFileTransformerModel.class, this.jsonHandlingService.toJsonSafe(model));
|
|
ExtraPropertiesModel extraPropertiesModel = new ExtraPropertiesModel();
|
|
extraPropertiesModel.setFormat(format);
|
|
eu.eudat.file.transformer.model.file.FileEnvelope fileEnvelope = repository.exportDmp(dmpFileTransformerModel, extraPropertiesModel);
|
|
FileEnvelope result = new FileEnvelope();
|
|
File temp = new File(environment.getProperty("path.path") + UUID.randomUUID());
|
|
try (FileOutputStream fos = new FileOutputStream(temp)) {
|
|
fos.write(fileEnvelope.getFile());
|
|
}
|
|
result.setFile(temp);
|
|
result.setFilename(fileEnvelope.getFilename());
|
|
return result;
|
|
}
|
|
|
|
public FileEnvelope exportDescription(UUID descriptionId, String format) throws InvalidApplicationException, IOException {
|
|
this.authorizationService.authorize(Permission.EditDmp);
|
|
//GK: Why it is in that service, and why it's not static?
|
|
this.conventionService.isValidGuid(descriptionId);
|
|
//GK: First get the right client
|
|
TransformerRepository repository = getRepository(format);
|
|
//GK: Second get the Target Data Management Plan
|
|
FieldSet fieldSet = new BaseFieldSet(
|
|
Description._dmp + "." + Dmp._id,
|
|
Description._dmp + "." + Dmp._createdAt,
|
|
Description._dmp + "." + Dmp._finalizedAt,
|
|
Description._dmp + "." + Dmp._groupId,
|
|
Description._dmp + "." + Dmp._isActive,
|
|
Description._dmp + "." + Dmp._label,
|
|
Description._dmp + "." + Dmp._language,
|
|
Description._dmp + "." + Dmp._publicAfter,
|
|
Description._dmp + "." + Dmp._status,
|
|
Description._dmp + "." + Dmp._updatedAt,
|
|
Description._dmp + "." + Dmp._version,
|
|
Description._dmp + "." + Dmp._properties,
|
|
Description._dmp + "." + Dmp._versionStatus,
|
|
Description._dmp + "." + Dmp._dmpReferences + "." + DmpReference._id,
|
|
Description._dmp + "." + Dmp._dmpReferences + "." + DmpReference._data,
|
|
Description._dmp + "." + Dmp._dmpReferences + "." + DmpReference._reference + "." + Reference._id,
|
|
Description._dmp + "." + Dmp._dmpReferences + "." + DmpReference._reference + "." + Reference._description,
|
|
Description._dmp + "." + Dmp._dmpReferences + "." + DmpReference._reference + "." + Reference._abbreviation,
|
|
Description._dmp + "." + Dmp._dmpReferences + "." + DmpReference._reference + "." + Reference._definition,
|
|
Description._dmp + "." + Dmp._dmpReferences + "." + DmpReference._reference + "." + Reference._label,
|
|
Description._dmp + "." + Dmp._dmpReferences + "." + DmpReference._reference + "." + Reference._source,
|
|
Description._dmp + "." + Dmp._dmpReferences + "." + DmpReference._reference + "." + Reference._sourceType,
|
|
Description._dmp + "." + Dmp._dmpReferences + "." + DmpReference._reference + "." + Reference._type,
|
|
Description._dmp + "." + Dmp._dmpReferences + "." + DmpReference._reference + "." + Reference._isActive,
|
|
Description._dmp + "." + Dmp._dmpReferences + "." + DmpReference._reference + "." + Reference._reference,
|
|
Description._id,
|
|
Description._label,
|
|
Description._properties,
|
|
Description._description,
|
|
Description._status,
|
|
Description._descriptionTags,
|
|
Description._descriptionTemplate,
|
|
Description._descriptionReferences,
|
|
Description._isActive,
|
|
Description._properties + "." + PropertyDefinition._fields + "." + eu.eudat.model.descriptionproperties.Field._key,
|
|
Description._properties + "." + PropertyDefinition._fields + "." + eu.eudat.model.descriptionproperties.Field._value,
|
|
Description._descriptionReferences + "." + DescriptionReference._id,
|
|
Description._descriptionReferences + "." + DescriptionReference._reference,
|
|
Description._descriptionReferences + "." + DescriptionReference._reference + "." + Reference._id,
|
|
Description._descriptionReferences + "." + DescriptionReference._reference + "." + Reference._description,
|
|
Description._descriptionReferences + "." + DescriptionReference._reference + "." + Reference._abbreviation,
|
|
Description._descriptionReferences + "." + DescriptionReference._reference + "." + Reference._definition,
|
|
Description._descriptionReferences + "." + DescriptionReference._reference + "." + Reference._label,
|
|
Description._descriptionReferences + "." + DescriptionReference._reference + "." + Reference._source,
|
|
Description._descriptionReferences + "." + DescriptionReference._reference + "." + Reference._sourceType,
|
|
Description._descriptionReferences + "." + DescriptionReference._reference + "." + Reference._type,
|
|
Description._descriptionReferences + "." + DescriptionReference._reference + "." + Reference._isActive,
|
|
Description._descriptionReferences + "." + DescriptionReference._reference + "." + Reference._reference,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._id,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._description,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._label,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._language,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._status,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._isActive,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._groupId,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._type,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._version,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._pages,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._id,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._description,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._sections,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._title,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._page,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._ordinal,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._defaultVisibility,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._extendedDescription,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._multiplicity + "." + Multiplicity._max,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._multiplicity + "." + Multiplicity._min,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._multiplicity + "." + Multiplicity._placeholder,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._multiplicity + "." + Multiplicity._tableView,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._numbering,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._id,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._title,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._description,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._ordinal,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._numbering,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._multiplicity + "." + Multiplicity._max,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._multiplicity + "." + Multiplicity._min,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._multiplicity + "." + Multiplicity._tableView,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._multiplicity + "." + Multiplicity._placeholder,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._hasCommentField,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._additionalInformation,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._extendedDescription,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._fields + "." + Field._id,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._fields + "." + Field._ordinal,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._fields + "." + Field._numbering,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._fields + "." + Field._data + "." + BaseFieldData._label,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._fields + "." + Field._data + "." + BaseFieldData._fieldType,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._fields + "." + Field._data + "." + AutoCompleteData._multiAutoComplete,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._fields + "." + Field._data + "." + AutoCompleteData._autoCompleteSingleDataList + "." + AutoCompleteSingleData._autoCompleteOptions + "." + ComboBoxOption._label,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._fields + "." + Field._data + "." + AutoCompleteData._autoCompleteSingleDataList + "." + AutoCompleteSingleData._autoCompleteOptions + "." + ComboBoxOption._uri,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._fields + "." + Field._data + "." + AutoCompleteData._autoCompleteSingleDataList + "." + AutoCompleteSingleData._autoCompleteOptions + "." + ComboBoxOption._source,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._fields + "." + Field._data + "." + AutoCompleteData._autoCompleteSingleDataList + "." + AutoCompleteSingleData._autoCompleteOptions + "." + ComboBoxOption._value,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._fields + "." + Field._defaultValue,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._fields + "." + Field._includeInExport,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._fields + "." + Field._schematics,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._fields + "." + Field._validations,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._fields + "." + Field._visibilityRules,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._fields + "." + Field._visibilityRules + "." + Rule._target,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._sections + "." + Section._fieldSets + "." + eu.eudat.model.descriptiontemplatedefinition.FieldSet._fields + "." + Field._visibilityRules + "." + Rule._value,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._pages + "." + Page._id,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._pages + "." + Page._ordinal,
|
|
Description._descriptionTemplate + "." + DescriptionTemplate._definition + "." + Definition._pages + "." + Page._title,
|
|
Description._descriptionTags + "." + DescriptionTag._id,
|
|
Description._descriptionTags + "." + DescriptionTag._tag + "." + Tag._id,
|
|
Description._descriptionTags + "." + DescriptionTag._tag + "." + Tag._label,
|
|
Description._dmp + "." + Dmp._entityDois + "." + EntityDoi._doi,
|
|
Description._dmp + "." + Dmp._entityDois + "." + EntityDoi._id,
|
|
Description._dmp + "." + Dmp._entityDois + "." + EntityDoi._entityType
|
|
);
|
|
DescriptionQuery query = this.queryFactory.query(DescriptionQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).ids(descriptionId);
|
|
Description model = this.builderFactory.builder(DescriptionBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(fieldSet, query.firstAs(fieldSet));
|
|
DescriptionFileTransformerModel descriptionFileTransformerModel = this.jsonHandlingService.fromJsonSafe(DescriptionFileTransformerModel.class, this.jsonHandlingService.toJsonSafe(model));
|
|
ExtraPropertiesModel extraPropertiesModel = new ExtraPropertiesModel();
|
|
extraPropertiesModel.setFormat(format);
|
|
eu.eudat.file.transformer.model.file.FileEnvelope fileEnvelope = repository.exportDescription(descriptionFileTransformerModel, extraPropertiesModel);
|
|
FileEnvelope result = new FileEnvelope();
|
|
File temp = new File(environment.getProperty("path.path") + UUID.randomUUID());
|
|
try (FileOutputStream fos = new FileOutputStream(temp)) {
|
|
fos.write(fileEnvelope.getFile());
|
|
}
|
|
result.setFile(temp);
|
|
result.setFilename(fileEnvelope.getFilename());
|
|
return result;
|
|
}
|
|
|
|
// This method returns filter function which will log request data
|
|
private static ExchangeFilterFunction logRequest() {
|
|
return ExchangeFilterFunction.ofRequestProcessor(clientRequest -> {
|
|
logger.info("Request: {} {}", clientRequest.method(), clientRequest.url());
|
|
clientRequest.headers().forEach((name, values) -> values.forEach(value -> logger.info("{}={}", name, value)));
|
|
return Mono.just(clientRequest);
|
|
});
|
|
}
|
|
}
|