312 lines
11 KiB
Java
312 lines
11 KiB
Java
package rest.entities;
|
|
|
|
import java.util.List;
|
|
import java.util.UUID;
|
|
import java.util.stream.Collectors;
|
|
|
|
import javax.transaction.Transactional;
|
|
|
|
import org.springframework.beans.factory.annotation.Autowired;
|
|
import org.springframework.http.HttpStatus;
|
|
import org.springframework.http.ResponseEntity;
|
|
import org.springframework.security.core.context.SecurityContextHolder;
|
|
import org.springframework.web.bind.annotation.CrossOrigin;
|
|
import org.springframework.web.bind.annotation.PathVariable;
|
|
import org.springframework.web.bind.annotation.RequestBody;
|
|
import org.springframework.web.bind.annotation.RequestMapping;
|
|
import org.springframework.web.bind.annotation.RequestMethod;
|
|
import org.springframework.web.bind.annotation.RequestParam;
|
|
import org.springframework.web.bind.annotation.ResponseBody;
|
|
import org.springframework.web.bind.annotation.RestController;
|
|
|
|
import com.fasterxml.jackson.annotation.JsonInclude.Include;
|
|
import com.fasterxml.jackson.core.JsonProcessingException;
|
|
import com.fasterxml.jackson.databind.DeserializationFeature;
|
|
import com.fasterxml.jackson.databind.ObjectMapper;
|
|
import com.mchange.v2.sql.filter.SynchronizedFilterDataSource;
|
|
|
|
import dao.entities.DMPDao;
|
|
import dao.entities.DMPProfileDao;
|
|
import dao.entities.DataRepositoryDao;
|
|
import dao.entities.DatasetDao;
|
|
import dao.entities.DatasetProfileDao;
|
|
import dao.entities.DatasetProfileRulesetDao;
|
|
import dao.entities.DatasetProfileViewstyleDao;
|
|
import dao.entities.OrganisationDao;
|
|
import dao.entities.ProjectDao;
|
|
import dao.entities.RegistryDao;
|
|
import dao.entities.ResearcherDao;
|
|
import dao.entities.ServiceDao;
|
|
import dao.entities.UserInfoDao;
|
|
import entities.DMP;
|
|
import entities.DMPProfile;
|
|
import entities.Dataset;
|
|
import entities.DatasetProfile;
|
|
import entities.DatasetProfileRuleset;
|
|
import entities.Project;
|
|
import entities.UserInfo;
|
|
import entities.responses.IDLabelPair;
|
|
import helpers.SerializerProvider;
|
|
import helpers.Transformers;
|
|
import responses.RestResponse;
|
|
|
|
|
|
@RestController
|
|
@CrossOrigin
|
|
public class DMPs {
|
|
|
|
@Autowired private DataRepositoryDao dataRepositoryDao;
|
|
@Autowired private DatasetDao datasetDao;
|
|
@Autowired private DatasetProfileDao datasetProfileDao;
|
|
@Autowired private DatasetProfileRulesetDao datasetProfileRulesetDao;
|
|
@Autowired private DatasetProfileViewstyleDao datasetProfileViewstyleDao;
|
|
@Autowired private DMPDao dMPDao;
|
|
@Autowired private DMPProfileDao dMPProfileDao;
|
|
@Autowired private OrganisationDao organisationDao;
|
|
@Autowired private ProjectDao projectDao;
|
|
@Autowired private RegistryDao registryDao;
|
|
@Autowired private ResearcherDao researcherDao;
|
|
@Autowired private ServiceDao serviceDao;
|
|
@Autowired private UserInfoDao userInfoDao;
|
|
|
|
|
|
private ObjectMapper objectMapper = SerializerProvider.getJsonSerializer();
|
|
|
|
|
|
// FETCH BY DMP(S)
|
|
|
|
@RequestMapping(method = RequestMethod.GET, value = { "/dmps" }, produces="text/plain")
|
|
public @ResponseBody ResponseEntity<Object> listDMPs(){
|
|
try {
|
|
List<UUID> allIDs = dMPDao.listAllIDs();
|
|
return ResponseEntity.status(HttpStatus.OK).body(objectMapper.writeValueAsString(allIDs));
|
|
}
|
|
catch(Exception ex) {
|
|
return ResponseEntity.status(HttpStatus.INTERNAL_SERVER_ERROR).body("Serialization issue: "+ex.getMessage());
|
|
}
|
|
}
|
|
|
|
@Transactional
|
|
@RequestMapping(method = RequestMethod.GET, value = { "/dmps/{id}" }, produces="application/json")
|
|
public @ResponseBody ResponseEntity<Object> getDMP(@PathVariable("id") String id){
|
|
try {
|
|
System.out.println("Trying for id: "+ id);
|
|
DMP dmp = dMPDao.read(UUID.fromString(id));
|
|
System.out.println("tried, got : "+ dmp.getId());
|
|
|
|
return ResponseEntity.status(HttpStatus.OK).body(objectMapper.writeValueAsString(dmp));
|
|
// return ResponseEntity.status(HttpStatus.OK).body(dmp);
|
|
}
|
|
catch(Exception ex) {
|
|
ex.printStackTrace();
|
|
return ResponseEntity.status(HttpStatus.BAD_REQUEST).body("Erroneous input: "+ex.getMessage());
|
|
}
|
|
}
|
|
|
|
@RequestMapping(method = RequestMethod.GET, value = { "/dmp/listDMPLabelID" }, produces="text/plain")
|
|
public @ResponseBody ResponseEntity<Object> listDmpLabelID(){
|
|
try {
|
|
List<IDLabelPair> allIDLabels = dMPDao.listAllIDsLabels();
|
|
return ResponseEntity.status(HttpStatus.OK).body(objectMapper.writeValueAsString(allIDLabels));
|
|
}
|
|
catch(Exception ex) {
|
|
return ResponseEntity.status(HttpStatus.INTERNAL_SERVER_ERROR).body("Serialization issue: "+ex.getMessage());
|
|
}
|
|
}
|
|
|
|
@RequestMapping(method = RequestMethod.GET, value = { "/dmp/ofuser" }, produces="text/plain")
|
|
public @ResponseBody ResponseEntity<Object> getDmpsOfUser(){
|
|
|
|
String userID = null;
|
|
try {
|
|
userID = SecurityContextHolder.getContext().getAuthentication().getPrincipal().toString();
|
|
} catch(NullPointerException ex) {
|
|
return ResponseEntity.status(HttpStatus.INTERNAL_SERVER_ERROR).body("You have not logged in. You shouldn't be here");
|
|
}
|
|
|
|
UserInfo userInfo = userInfoDao.read(UUID.fromString(userID));
|
|
|
|
if(userInfo==null) //this should normally never happer
|
|
return ResponseEntity.status(HttpStatus.INTERNAL_SERVER_ERROR).body("There's no such a user on the system. You shouldn't be here");
|
|
|
|
try {
|
|
return ResponseEntity.status(HttpStatus.OK).body(objectMapper.writeValueAsString(userInfo.getDmps()));
|
|
}
|
|
catch(Exception ex) {
|
|
return ResponseEntity.status(HttpStatus.INTERNAL_SERVER_ERROR).body("Serialization issue: "+ex.getMessage());
|
|
}
|
|
|
|
}
|
|
|
|
|
|
|
|
/**
|
|
* This should be called on extreme cases. It's computationally intensive
|
|
*/
|
|
@RequestMapping(method = RequestMethod.GET, value = { "/dmp/getAll" }, produces="application/json")
|
|
public @ResponseBody ResponseEntity<Object> getAllDMPs(){
|
|
|
|
try {
|
|
List<DMP> allDMPs = dMPDao.getAll();
|
|
|
|
//sorry for that, spring-jersey serialisation has issues when performed on tables, so -> custom
|
|
List<String> dmpStrL = allDMPs.parallelStream().map((dmpObj) -> {
|
|
try {
|
|
return objectMapper.writeValueAsString(dmpObj);
|
|
} catch (JsonProcessingException e) {
|
|
return "";
|
|
}
|
|
}).collect(Collectors.toList());
|
|
|
|
return new ResponseEntity<Object>("["+String.join(",", dmpStrL)+"]", HttpStatus.OK);
|
|
|
|
}
|
|
catch(Exception ex) {
|
|
return new ResponseEntity<>(null, HttpStatus.INTERNAL_SERVER_ERROR);
|
|
}
|
|
}
|
|
|
|
|
|
@Transactional
|
|
@RequestMapping(method = RequestMethod.POST, value = { "/dmp/create" }, consumes = "application/json", produces="application/json")
|
|
public @ResponseBody ResponseEntity<Object> setDMP(@RequestBody DMP dmp) {
|
|
DMP createdDmp = dMPDao.update(dmp);
|
|
try {
|
|
return ResponseEntity.status(HttpStatus.CREATED).body(objectMapper.writeValueAsString(createdDmp));
|
|
} catch (JsonProcessingException e) {
|
|
return ResponseEntity.status(HttpStatus.INTERNAL_SERVER_ERROR).body("{\"msg\":\"Could not create DMP!\"");
|
|
}
|
|
|
|
}
|
|
|
|
/*
|
|
@RequestMapping(method = RequestMethod.POST, value = { "/dmp/set/full" }, consumes = "application/json", produces="application/json")
|
|
public @ResponseBody ResponseEntity<Object> setFullDMP(@RequestBody DMP dmp) {
|
|
|
|
//This function is a little bit tricky to implement (due to the irregular ORM mappings of the hibernate).
|
|
// Please make changes only if you are sure about what you're altering.
|
|
|
|
Dataset dataset = SerializationUtils.clone(dmp.getDataset());
|
|
|
|
dmp.setDataset(null);
|
|
|
|
int failsDMP = 0;
|
|
String reasonDmp = "";
|
|
DMP storedDMP = null;
|
|
//try first to create DMP
|
|
try {
|
|
storedDMP = dMPDao.create(dmp);
|
|
}
|
|
catch(Exception e) {
|
|
e.printStackTrace();
|
|
failsDMP++;
|
|
reasonDmp += e.getMessage();
|
|
//try updating DMP
|
|
try {
|
|
storedDMP = dMPDao.update(dmp);
|
|
}
|
|
catch(Exception ex) {
|
|
reasonDmp += (System.lineSeparator()+e.getMessage());
|
|
failsDMP++;
|
|
ex.printStackTrace();
|
|
}
|
|
}
|
|
|
|
if(failsDMP==2)
|
|
return ResponseEntity.status(HttpStatus.INTERNAL_SERVER_ERROR).body("Could not create or update DMP! Reason: " + reasonDmp);
|
|
|
|
dataset.setDmp(storedDMP); //very important!
|
|
|
|
int failsDataset = 0;
|
|
String reasonDataset = "";
|
|
Dataset storedDataset = null;
|
|
if(dataset != null) {
|
|
//try first to create DMP
|
|
try {
|
|
storedDataset = datasetDao.create(dataset);
|
|
}
|
|
catch(Exception e) {
|
|
e.printStackTrace();
|
|
failsDataset++;
|
|
reasonDataset += e.getMessage();
|
|
//try updating DMP
|
|
try {
|
|
storedDataset = datasetDao.update(dataset);
|
|
}
|
|
catch(Exception ex) {
|
|
reasonDataset += (System.lineSeparator()+e.getMessage());
|
|
failsDataset++;
|
|
ex.printStackTrace();
|
|
}
|
|
}
|
|
}
|
|
|
|
String respBody;
|
|
try {
|
|
respBody = objectMapper.writeValueAsString(storedDMP.getId());
|
|
}
|
|
catch(JsonProcessingException ex) {
|
|
respBody = "{\"id\":\""+storedDMP.getId()+"\"}";
|
|
}
|
|
|
|
if(failsDataset != 2) {
|
|
if(failsDMP==0)
|
|
return ResponseEntity.status(HttpStatus.CREATED).body(respBody);
|
|
else if(failsDMP==1)
|
|
return ResponseEntity.status(HttpStatus.CREATED).body("Updated DMP with id: " + storedDMP.getId());
|
|
else
|
|
return ResponseEntity.status(HttpStatus.INTERNAL_SERVER_ERROR).body("Could not create DMP! Reason:"+ reasonDmp);
|
|
}
|
|
else {
|
|
return ResponseEntity.status(HttpStatus.INTERNAL_SERVER_ERROR).body("Could not create DMP! Failed to create or update its Dataset. Reason: "+reasonDataset);
|
|
}
|
|
|
|
|
|
}
|
|
|
|
*/
|
|
|
|
|
|
@RequestMapping(method = RequestMethod.POST, value = { "/dmp/delete" }, consumes = "application/json", produces="text/plain")
|
|
public @ResponseBody ResponseEntity<Object> delete(@RequestBody DMP dmp) {
|
|
|
|
DMP d = new DMP();
|
|
d.setId(dmp.getId());
|
|
try {
|
|
dMPDao.delete(d);
|
|
return ResponseEntity.status(HttpStatus.CREATED).body("DELETED!");
|
|
} catch (Exception e) {
|
|
e.printStackTrace();
|
|
return ResponseEntity.status(HttpStatus.INTERNAL_SERVER_ERROR).body("{\"msg\":\"Could not Delete DMP!\"");
|
|
}
|
|
|
|
}
|
|
|
|
|
|
|
|
/*
|
|
// OLD ONES, USED BY THE EMBEDDED (simple) UI OF THIS SERVICE
|
|
@RequestMapping(method = RequestMethod.POST, value = { "/setDMPByForm" }, consumes = MediaType.APPLICATION_FORM_URLENCODED_VALUE, produces="text/plain")
|
|
public @ResponseBody ResponseEntity<Object> setDMPByForm(@RequestBody MultiValueMap<String,String> formData) {
|
|
//create the whole dmp structure by the form fields
|
|
DMP dmp = Transformers.createDMPfromMap(formData);
|
|
return setDMP(dmp);
|
|
}
|
|
|
|
@RequestMapping(method = RequestMethod.POST, value = { "/editDMPByForm" }, consumes = MediaType.APPLICATION_FORM_URLENCODED_VALUE, produces="text/plain")
|
|
public @ResponseBody ResponseEntity<Object> editDMPByForm(@RequestBody MultiValueMap<String,String> formData) {
|
|
//get previous DMP by id, replace fields, and update
|
|
DMP dmp = dMPDao.read(UUID.fromString(formData.getFirst("dmp-id")));
|
|
dmp.getDataset().getProfile().setDefinition(formData.getFirst("DatasetProfile.definition"));
|
|
dmp.getDataset().getProfile().getRuleset().setDefinition(formData.getFirst("DatasetProfileRuleset.definition"));
|
|
dmp.getDataset().getProfile().getViewstyle().setDefinition(formData.getFirst("DatasetProfileViewStyle.definition"));
|
|
return setDMP(dmp);
|
|
}
|
|
*/
|
|
|
|
|
|
|
|
|
|
}
|
|
|