Compare commits
11 Commits
master
...
update_dep
| Author | SHA1 | Date |
|---|---|---|
 George Kalampokis
|
a977ab6d51 | |
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George Kalampokis
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e18232e3f4 | |
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George Kalampokis
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e26f56c301 | |
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George Kalampokis
|
f6ff1fa4e9 | |
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George Kalampokis
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b8fffd705e | |
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George Kalampokis
|
3204547527 | |
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George Kalampokis
|
b205870dde | |
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George Kalampokis
|
cc5b7443e4 | |
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George Kalampokis
|
6c4f98e5c8 | |
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George Kalampokis
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fea9adcebc | |
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George Kalampokis
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30c669cb8c |
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@ -11,7 +11,6 @@ import eu.eudat.types.grant.GrantStateType;
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import org.springframework.beans.factory.annotation.Autowired;
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import org.springframework.scheduling.annotation.Async;
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import org.springframework.stereotype.Component;
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import schemasMicrosoftComOfficeOffice.LeftDocument;
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import javax.persistence.criteria.JoinType;
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import java.util.Date;
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|
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@ -10,7 +10,7 @@
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<parent>
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<groupId>org.springframework.boot</groupId>
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<artifactId>spring-boot-starter-parent</artifactId>
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<version>2.5.2</version>
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<version>2.6.3</version>
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</parent>
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<modules>
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@ -27,41 +27,34 @@
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<java.version>1.8</java.version>
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<dmp-backend-commons.version>0.0.1-SNAPSHOT</dmp-backend-commons.version>
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<org.springframework.version>5.3.8</org.springframework.version>
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<org.springframework.version>5.3.14</org.springframework.version>
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<!-- <org.springframeweu.eudat.logic.securityrity.version>3.2.10.RELEASE</org.springframeweu.eudat.logic.securityrity.version> -->
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<org.springframework.security.version>5.3.10.RELEASE</org.springframework.security.version>
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<!--<com.sun.jersey.version>1.19.1</com.sun.jersey.version>-->
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<!--
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<org.apache.tomcat.tomcat-jdbc.version>7.0.35</org.apache.tomcat.tomcat-jdbc.version>
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-->
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<!--<com.fasterxml.jackson>2.9.0</com.fasterxml.jackson>-->
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<com.fasterxml.jackson.version>2.13.1</com.fasterxml.jackson.version>
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<hibernate.version>5.5.3.Final</hibernate.version>
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<hibernate.version>5.6.3.Final</hibernate.version>
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<commons-codec.version>1.9</commons-codec.version>
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<org.junit.version>4.11</org.junit.version>
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<log4j.version>1.2.17</log4j.version>
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<log4j2.version>2.15.0</log4j2.version>
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<log4j2.version>2.17.0</log4j2.version>
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<slf4j.version>1.7.12</slf4j.version>
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<!--<jetty.version>11.0.5
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</jetty.version>--> <!-- Adapt this to a version found on http://repo.maven.apache.org/maven2/org/eclipse/jetty/jetty-maven-plugin/ -->
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<logback.version>1.2.3</logback.version>
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<logback.version>1.2.10</logback.version>
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<!-- <javax.inject.version>1</javax.inject.version>-->
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<!--<javax.servlet.servlet-api.version>3.0.1</javax.servlet.servlet-api.version>-->
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<org.apache.poi.version>5.0.0</org.apache.poi.version>
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<xml.version>3.0.1</xml.version>
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<elasticsearch.version>7.7.0</elasticsearch.version>
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</properties>
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<dependencies>
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<dependency>
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<groupId>org.json</groupId>
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<artifactId>json</artifactId>
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<version>20160810</version>
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</dependency>
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<dependency>
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<groupId>org.springframework</groupId>
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<artifactId>spring-context-support</artifactId>
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<version>${org.springframework.version}</version>
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</dependency>
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<dependency>
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<groupId>org.springframework.boot</groupId>
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<artifactId>spring-boot-starter-data-jpa</artifactId>
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@ -71,122 +64,70 @@
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<dependency>
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<groupId>org.elasticsearch</groupId>
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<artifactId>elasticsearch</artifactId>
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<version>7.7.0</version>
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<exclusions>
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<exclusion>
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<groupId>org.apache.httpcomponents</groupId>
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<artifactId>httpclient</artifactId>
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</exclusion>
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<exclusion>
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<groupId>org.apache.httpcomponents</groupId>
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<artifactId>httpcore</artifactId>
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</exclusion>
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<exclusion>
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<groupId>org.apache.httpcomponents</groupId>
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<artifactId>httpcore-nio</artifactId>
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</exclusion>
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</exclusions>
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</dependency>
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<dependency>
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<groupId>org.apache.httpcomponents</groupId>
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<artifactId>httpclient</artifactId>
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<version>4.5.12</version>
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</dependency>
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<dependency>
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<groupId>org.apache.httpcomponents</groupId>
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<artifactId>httpcore-nio</artifactId>
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<version>4.4.13</version>
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</dependency>
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<dependency>
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<groupId>org.apache.httpcomponents</groupId>
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<artifactId>httpcore</artifactId>
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<version>4.4.13</version>
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<version>${elasticsearch.version}</version>
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</dependency>
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<dependency>
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<groupId>org.elasticsearch.client</groupId>
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<artifactId>elasticsearch-rest-high-level-client</artifactId>
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<version>7.6.0</version>
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</dependency>
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<dependency>
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<groupId>org.hibernate</groupId>
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<artifactId>hibernate-core</artifactId>
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<version>${hibernate.version}</version>
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</dependency>
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<dependency>
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<groupId>org.hibernate</groupId>
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<artifactId>hibernate-c3p0</artifactId>
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<version>${hibernate.version}</version>
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<version>${elasticsearch.version}</version>
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</dependency>
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<!-- https://mvnrepository.com/artifact/com.google.api-client/google-api-client -->
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<dependency>
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<groupId>com.google.api-client</groupId>
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<artifactId>google-api-client</artifactId>
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<version>1.23.0</version>
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<version>1.33.0</version>
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</dependency>
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<!-- https://mvnrepository.com/artifact/com.jayway.jsonpath/json-path -->
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<dependency>
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<groupId>com.jayway.jsonpath</groupId>
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<artifactId>json-path</artifactId>
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<version>2.4.0</version>
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<version>2.6.0</version>
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</dependency>
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<!-- https://mvnrepository.com/artifact/com.fasterxml.jackson.dataformat/jackson-dataformat-xml -->
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<dependency>
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<groupId>com.fasterxml.jackson.dataformat</groupId>
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<artifactId>jackson-dataformat-xml</artifactId>
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<version>2.12.3</version>
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</dependency>
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<!-- https://mvnrepository.com/artifact/com.fasterxml.jackeu.eudat.corecore/jackeu.eudat.corecore -->
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<dependency>
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<groupId>com.fasterxml.jackson.core</groupId>
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<artifactId>jackson-core</artifactId>
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<version>2.12.3</version>
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<version>${com.fasterxml.jackson.version}</version>
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</dependency>
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<!-- https://mvnrepository.com/artifact/com.fasterxml.jackeu.eudat.corecore/jackson-databind -->
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<dependency>
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<groupId>com.fasterxml.jackson.core</groupId>
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<artifactId>jackson-databind</artifactId>
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||||
<version>2.12.3</version>
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<version>${com.fasterxml.jackson.version}</version>
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</dependency>
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<!-- g/a spring -->
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<!-- https://mvnrepository.com/artifact/com.fasterxml.jackeu.eudat.corecore/jackson-databind -->
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<dependency>
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<groupId>com.fasterxml.jackson.core</groupId>
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<artifactId>jackson-annotations</artifactId>
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<version>${com.fasterxml.jackson.version}</version>
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</dependency>
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<!-- Various libs -->
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<dependency>
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<groupId>org.apache.commons</groupId>
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<artifactId>commons-lang3</artifactId>
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<version>3.5</version>
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</dependency>
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<!-- https://mvnrepository.com/artifact/org.apache.poi/poi -->
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<dependency>
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<groupId>org.apache.poi</groupId>
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<artifactId>poi-ooxml</artifactId>
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<version>4.0.0</version>
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<version>${org.apache.poi.version}</version>
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</dependency>
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<!--<dependency>
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<groupId>org.apache.poi</groupId>
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||||
<artifactId>poi-ooxml-full</artifactId>
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<version>${org.apache.poi.version}</version>
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</dependency>-->
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<dependency>
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<groupId>org.apache.poi</groupId>
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||||
<artifactId>poi</artifactId>
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<version>4.0.0</version>
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</dependency>
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<!-- https://mvnrepository.com/artifact/org.apache.xmlgraphics/fop -->
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||||
<dependency>
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<groupId>org.apache.xmlgraphics</groupId>
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<artifactId>fop</artifactId>
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<version>2.3</version>
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<version>${org.apache.poi.version}</version>
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</dependency>
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<dependency>
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@ -194,75 +135,37 @@
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<artifactId>jsoup</artifactId>
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||||
<version>1.14.3</version>
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</dependency>
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<!-- https://mvnrepository.com/artifact/fr.opensagres.xdocreport/org.apache.poi.xwpf.converter.pdf -->
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<dependency>
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||||
<groupId>fr.opensagres.xdocreport</groupId>
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<artifactId>org.apache.poi.xwpf.converter.pdf</artifactId>
|
||||
<version>1.0.6</version>
|
||||
</dependency>
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||||
<!-- https://mvnrepository.com/artifact/fr.opensagres.xdocreport/org.apache.poi.xwpf.convereu.eudat.corecore -->
|
||||
<dependency>
|
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<groupId>fr.opensagres.xdocreport</groupId>
|
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<artifactId>org.apache.poi.xwpf.converter.core</artifactId>
|
||||
<version>1.0.6</version>
|
||||
</dependency>
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<!-- https://mvnrepository.com/artifact/fr.opensagres.xdocreport/fr.opensagres.xdocreport.itext.extension -->
|
||||
<dependency>
|
||||
<groupId>fr.opensagres.xdocreport</groupId>
|
||||
<artifactId>fr.opensagres.xdocreport.itext.extension</artifactId>
|
||||
<version>2.0.1</version>
|
||||
</dependency>
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|
||||
<dependency>
|
||||
<groupId>commons-io</groupId>
|
||||
<artifactId>commons-io</artifactId>
|
||||
<version>2.1</version>
|
||||
</dependency>
|
||||
|
||||
<!--<dependency>
|
||||
<groupId>org.hibernate</groupId>
|
||||
<artifactId>hibernate-jpamodelgen</artifactId>
|
||||
</dependency>-->
|
||||
|
||||
<dependency>
|
||||
<groupId>org.elasticsearch.client</groupId>
|
||||
<artifactId>transport</artifactId>
|
||||
<version>7.6.0</version>
|
||||
<version>${elasticsearch.version}</version>
|
||||
</dependency>
|
||||
|
||||
<!--<dependency>
|
||||
<groupId>org.apache.logging.log4j</groupId>
|
||||
<artifactId>log4j-to-slf4j</artifactId>
|
||||
<version>2.8.2</version>
|
||||
</dependency>-->
|
||||
|
||||
<!-- https://mvnrepository.com/artifact/javax.xml.bind/jaxb-api -->
|
||||
<dependency>
|
||||
<groupId>javax.xml.bind</groupId>
|
||||
<artifactId>jaxb-api</artifactId>
|
||||
<version>2.3.1</version>
|
||||
<groupId>jakarta.xml.bind</groupId>
|
||||
<artifactId>jakarta.xml.bind-api</artifactId>
|
||||
<version>${xml.version}</version>
|
||||
</dependency>
|
||||
|
||||
<dependency>
|
||||
<groupId>jakarta.activation</groupId>
|
||||
<artifactId>jakarta.activation-api</artifactId>
|
||||
<version>2.0.1</version>
|
||||
</dependency>
|
||||
|
||||
<!-- https://mvnrepository.com/artifact/org.glassfish.jaxb/jaxb-core -->
|
||||
<dependency>
|
||||
<groupId>org.glassfish.jaxb</groupId>
|
||||
<artifactId>jaxb-core</artifactId>
|
||||
<version>2.3.0</version>
|
||||
<version>${xml.version}</version>
|
||||
</dependency>
|
||||
|
||||
<!-- https://mvnrepository.com/artifact/org.glassfish.jaxb/jaxb-runtime -->
|
||||
<dependency>
|
||||
<groupId>org.glassfish.jaxb</groupId>
|
||||
<artifactId>jaxb-runtime</artifactId>
|
||||
<version>2.3.1</version>
|
||||
</dependency>
|
||||
|
||||
|
||||
<!-- https://mvnrepository.com/artifact/javax.annotation/javax.annotation-api -->
|
||||
<dependency>
|
||||
<groupId>javax.annotation</groupId>
|
||||
<artifactId>javax.annotation-api</artifactId>
|
||||
<version>1.3.1</version>
|
||||
<version>${xml.version}</version>
|
||||
</dependency>
|
||||
|
||||
<!-- https://mvnrepository.com/artifact/javax.validation/validation-api -->
|
||||
|
|
@ -272,37 +175,11 @@
|
|||
<version>2.0.1.Final</version>
|
||||
</dependency>
|
||||
|
||||
|
||||
<!-- The client -->
|
||||
<dependency>
|
||||
<groupId>io.prometheus</groupId>
|
||||
<artifactId>simpleclient</artifactId>
|
||||
<version>0.11.0</version>
|
||||
</dependency>
|
||||
<!-- Hotspot JVM metrics-->
|
||||
<dependency>
|
||||
<groupId>io.prometheus</groupId>
|
||||
<artifactId>simpleclient_hotspot</artifactId>
|
||||
<version>0.11.0</version>
|
||||
</dependency>
|
||||
<!-- Exposition HTTPServer-->
|
||||
<dependency>
|
||||
<groupId>io.prometheus</groupId>
|
||||
<artifactId>simpleclient_httpserver</artifactId>
|
||||
<version>0.11.0</version>
|
||||
</dependency>
|
||||
<!-- Pushgateway exposition-->
|
||||
<dependency>
|
||||
<groupId>io.prometheus</groupId>
|
||||
<artifactId>simpleclient_pushgateway</artifactId>
|
||||
<version>0.11.0</version>
|
||||
</dependency>
|
||||
|
||||
<!-- https://mvnrepository.com/artifact/io.micrometer/micrometer-registry-prometheus -->
|
||||
<dependency>
|
||||
<groupId>io.micrometer</groupId>
|
||||
<artifactId>micrometer-registry-prometheus</artifactId>
|
||||
<version>1.7.1</version>
|
||||
<version>1.8.1</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.springframework.boot</groupId>
|
||||
|
|
|
|||
|
|
@ -43,35 +43,11 @@
|
|||
<groupId>org.springframework.boot</groupId>
|
||||
<artifactId>spring-boot-starter-mail</artifactId>
|
||||
</dependency>
|
||||
<!-- https://mvnrepository.com/artifact/com.googlecode.json-simple/json-simple -->
|
||||
<!-- https://mvnrepository.com/artifact/com.fasterxml.jackson.core/jackson-databind -->
|
||||
|
||||
|
||||
<dependency>
|
||||
<groupId>com.fasterxml.jackson.core</groupId>
|
||||
<artifactId>jackson-annotations</artifactId>
|
||||
<version>2.12.3</version>
|
||||
</dependency>
|
||||
|
||||
<!-- https://mvnrepository.com/artifact/org.springframework/spring-context -->
|
||||
<!--<dependency>
|
||||
<groupId>org.springframework</groupId>
|
||||
<artifactId>spring-context</artifactId>
|
||||
<version>5.3.8</version>
|
||||
</dependency>-->
|
||||
|
||||
<!-- guava eu.eudat.cache -->
|
||||
<!-- <dependency>
|
||||
<groupId>com.google.guava</groupId>
|
||||
<artifactId>guava</artifactId>
|
||||
<version>30.1.1-jre</version>
|
||||
</dependency>-->
|
||||
<!-- https://mvnrepository.com/artifact/org.springframework/spring-context-support -->
|
||||
|
||||
<dependency>
|
||||
<groupId>com.github.ben-manes.caffeine</groupId>
|
||||
<artifactId>caffeine</artifactId>
|
||||
<version>2.9.0</version>
|
||||
<version>2.9.3</version>
|
||||
</dependency>
|
||||
|
||||
|
||||
|
|
@ -80,14 +56,14 @@
|
|||
<dependency>
|
||||
<groupId>org.junit.jupiter</groupId>
|
||||
<artifactId>junit-jupiter-api</artifactId>
|
||||
<version>5.7.2</version>
|
||||
<version>5.8.2</version>
|
||||
<scope>test</scope>
|
||||
</dependency>
|
||||
|
||||
<dependency>
|
||||
<groupId>org.postgresql</groupId>
|
||||
<artifactId>postgresql</artifactId>
|
||||
<version>42.2.22</version>
|
||||
<version>42.3.1</version>
|
||||
</dependency>
|
||||
|
||||
<dependency>
|
||||
|
|
@ -116,21 +92,11 @@
|
|||
<artifactId>spring-social-twitter</artifactId>
|
||||
<version>1.1.2.RELEASE</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.springframework.boot</groupId>
|
||||
<artifactId>spring-boot-starter-tomcat</artifactId>
|
||||
</dependency>
|
||||
</dependencies>
|
||||
|
||||
<build>
|
||||
<finalName>${project.artifactId}-${project.version}</finalName>
|
||||
<resources>
|
||||
<resource>
|
||||
<directory>src/main/ui-resources</directory>
|
||||
<excludes>
|
||||
<exclude>node_modules/**</exclude>
|
||||
</excludes>
|
||||
</resource>
|
||||
<resource>
|
||||
<directory>src/main/resources</directory>
|
||||
|
||||
|
|
|
|||
|
|
@ -7,7 +7,6 @@ import org.springframework.boot.jdbc.DataSourceBuilder;
|
|||
import org.springframework.context.annotation.*;
|
||||
import org.springframework.core.env.Environment;
|
||||
import org.springframework.dao.annotation.PersistenceExceptionTranslationPostProcessor;
|
||||
import org.springframework.jdbc.datasource.DriverManagerDataSource;
|
||||
import org.springframework.orm.jpa.JpaTransactionManager;
|
||||
import org.springframework.orm.jpa.JpaVendorAdapter;
|
||||
import org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean;
|
||||
|
|
@ -67,7 +66,7 @@ public class DevelDatabaseConfiguration {
|
|||
private Properties additionalProperties() {
|
||||
Properties properties = new Properties();
|
||||
properties.setProperty("hibernate.dialect", "org.hibernate.dialect.PostgreSQL92Dialect");
|
||||
properties.setProperty("hibernate.show_sql", "true");
|
||||
properties.setProperty("hibernate.show_sql", "false");
|
||||
properties.setProperty("hibernate.temp.use_jdbc_metadata_defaults", "false");
|
||||
return properties;
|
||||
}
|
||||
|
|
|
|||
|
|
@ -1,30 +0,0 @@
|
|||
package eu.eudat.configurations;
|
||||
|
||||
import com.fasterxml.jackson.annotation.JsonInclude;
|
||||
import com.fasterxml.jackson.databind.DeserializationFeature;
|
||||
import com.fasterxml.jackson.databind.Module;
|
||||
import com.fasterxml.jackson.databind.ObjectMapper;
|
||||
import com.fasterxml.jackson.databind.SerializationFeature;
|
||||
import com.fasterxml.jackson.databind.module.SimpleModule;
|
||||
import eu.eudat.criteria.entities.Criteria;
|
||||
import eu.eudat.criteria.serialzier.CriteriaSerializer;
|
||||
import org.springframework.context.annotation.Bean;
|
||||
import org.springframework.context.annotation.Configuration;
|
||||
|
||||
import java.util.ArrayList;
|
||||
|
||||
@Configuration
|
||||
public class JacksonConfiguration {
|
||||
@Bean
|
||||
public ObjectMapper buildObjectMapper() {
|
||||
|
||||
ArrayList<Module> modules = new ArrayList<>();
|
||||
SimpleModule criteriaSerializerModule = new SimpleModule();
|
||||
criteriaSerializerModule.addDeserializer(Criteria.class, new CriteriaSerializer());
|
||||
modules.add(criteriaSerializerModule);
|
||||
|
||||
return new ObjectMapper()
|
||||
.configure(DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES, false)
|
||||
.registerModules(modules);
|
||||
}
|
||||
}
|
||||
|
|
@ -10,8 +10,8 @@ import org.springframework.context.annotation.Profile;
|
|||
import org.springframework.core.env.Environment;
|
||||
import org.springframework.stereotype.Service;
|
||||
|
||||
import javax.xml.bind.JAXBContext;
|
||||
import javax.xml.bind.Unmarshaller;
|
||||
import jakarta.xml.bind.JAXBContext;
|
||||
import jakarta.xml.bind.Unmarshaller;
|
||||
import java.io.IOException;
|
||||
import java.io.InputStream;
|
||||
import java.net.URL;
|
||||
|
|
|
|||
|
|
@ -10,8 +10,8 @@ import org.springframework.context.annotation.Profile;
|
|||
import org.springframework.core.env.Environment;
|
||||
import org.springframework.stereotype.Service;
|
||||
|
||||
import javax.xml.bind.JAXBContext;
|
||||
import javax.xml.bind.Unmarshaller;
|
||||
import jakarta.xml.bind.JAXBContext;
|
||||
import jakarta.xml.bind.Unmarshaller;
|
||||
import java.io.IOException;
|
||||
import java.io.InputStream;
|
||||
import java.net.URL;
|
||||
|
|
|
|||
|
|
@ -1,8 +1,8 @@
|
|||
package eu.eudat.configurations.dynamicfunder.entities;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlElementWrapper;
|
||||
import javax.xml.bind.annotation.XmlRootElement;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElementWrapper;
|
||||
import jakarta.xml.bind.annotation.XmlRootElement;
|
||||
import java.util.List;
|
||||
|
||||
@XmlRootElement
|
||||
|
|
|
|||
|
|
@ -1,6 +1,6 @@
|
|||
package eu.eudat.configurations.dynamicfunder.entities;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
|
||||
public class Dependency {
|
||||
private String id;
|
||||
|
|
|
|||
|
|
@ -1,6 +1,6 @@
|
|||
package eu.eudat.configurations.dynamicfunder.entities;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
|
||||
public class Language {
|
||||
private String key;
|
||||
|
|
|
|||
|
|
@ -2,8 +2,8 @@ package eu.eudat.configurations.dynamicfunder.entities;
|
|||
|
||||
import eu.eudat.logic.proxy.config.UrlConfiguration;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlElementWrapper;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElementWrapper;
|
||||
import java.util.List;
|
||||
|
||||
public class MainProperty {
|
||||
|
|
|
|||
|
|
@ -1,8 +1,8 @@
|
|||
package eu.eudat.configurations.dynamicfunder.entities;
|
||||
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlElementWrapper;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElementWrapper;
|
||||
import java.util.List;
|
||||
|
||||
public class Property {
|
||||
|
|
|
|||
|
|
@ -11,8 +11,8 @@ import org.springframework.context.annotation.Profile;
|
|||
import org.springframework.core.env.Environment;
|
||||
import org.springframework.stereotype.Service;
|
||||
|
||||
import javax.xml.bind.JAXBContext;
|
||||
import javax.xml.bind.Unmarshaller;
|
||||
import jakarta.xml.bind.JAXBContext;
|
||||
import jakarta.xml.bind.Unmarshaller;
|
||||
import java.io.IOException;
|
||||
import java.io.InputStream;
|
||||
import java.net.URL;
|
||||
|
|
|
|||
|
|
@ -11,8 +11,8 @@ import org.springframework.context.annotation.Profile;
|
|||
import org.springframework.core.env.Environment;
|
||||
import org.springframework.stereotype.Service;
|
||||
|
||||
import javax.xml.bind.JAXBContext;
|
||||
import javax.xml.bind.Unmarshaller;
|
||||
import jakarta.xml.bind.JAXBContext;
|
||||
import jakarta.xml.bind.Unmarshaller;
|
||||
import java.io.IOException;
|
||||
import java.io.InputStream;
|
||||
import java.net.URL;
|
||||
|
|
|
|||
|
|
@ -1,8 +1,8 @@
|
|||
package eu.eudat.configurations.dynamicgrant.entities;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlElementWrapper;
|
||||
import javax.xml.bind.annotation.XmlRootElement;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElementWrapper;
|
||||
import jakarta.xml.bind.annotation.XmlRootElement;
|
||||
import java.util.List;
|
||||
|
||||
/**
|
||||
|
|
|
|||
|
|
@ -1,6 +1,6 @@
|
|||
package eu.eudat.configurations.dynamicgrant.entities;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
|
||||
/**
|
||||
* Created by ikalyvas on 3/23/2018.
|
||||
|
|
|
|||
|
|
@ -1,6 +1,6 @@
|
|||
package eu.eudat.configurations.dynamicgrant.entities;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
|
||||
/**
|
||||
* Created by ikalyvas on 3/28/2018.
|
||||
|
|
|
|||
|
|
@ -2,8 +2,8 @@ package eu.eudat.configurations.dynamicgrant.entities;
|
|||
|
||||
import eu.eudat.logic.proxy.config.UrlConfiguration;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlElementWrapper;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElementWrapper;
|
||||
import java.util.List;
|
||||
|
||||
/**
|
||||
|
|
|
|||
|
|
@ -1,7 +1,7 @@
|
|||
package eu.eudat.configurations.dynamicgrant.entities;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlElementWrapper;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElementWrapper;
|
||||
import java.util.List;
|
||||
|
||||
/**
|
||||
|
|
|
|||
|
|
@ -11,8 +11,8 @@ import org.springframework.context.annotation.Profile;
|
|||
import org.springframework.core.env.Environment;
|
||||
import org.springframework.stereotype.Service;
|
||||
|
||||
import javax.xml.bind.JAXBContext;
|
||||
import javax.xml.bind.Unmarshaller;
|
||||
import jakarta.xml.bind.JAXBContext;
|
||||
import jakarta.xml.bind.Unmarshaller;
|
||||
import java.io.IOException;
|
||||
import java.io.InputStream;
|
||||
import java.net.URL;
|
||||
|
|
|
|||
|
|
@ -11,8 +11,8 @@ import org.springframework.context.annotation.Profile;
|
|||
import org.springframework.core.env.Environment;
|
||||
import org.springframework.stereotype.Service;
|
||||
|
||||
import javax.xml.bind.JAXBContext;
|
||||
import javax.xml.bind.Unmarshaller;
|
||||
import jakarta.xml.bind.JAXBContext;
|
||||
import jakarta.xml.bind.Unmarshaller;
|
||||
import java.io.IOException;
|
||||
import java.io.InputStream;
|
||||
import java.net.URL;
|
||||
|
|
|
|||
|
|
@ -1,9 +1,9 @@
|
|||
package eu.eudat.configurations.dynamicproject.entities;
|
||||
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlElementWrapper;
|
||||
import javax.xml.bind.annotation.XmlRootElement;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElementWrapper;
|
||||
import jakarta.xml.bind.annotation.XmlRootElement;
|
||||
import java.util.List;
|
||||
|
||||
@XmlRootElement
|
||||
|
|
|
|||
|
|
@ -1,6 +1,6 @@
|
|||
package eu.eudat.configurations.dynamicproject.entities;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
|
||||
public class Dependency {
|
||||
private String id;
|
||||
|
|
|
|||
|
|
@ -1,6 +1,6 @@
|
|||
package eu.eudat.configurations.dynamicproject.entities;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
|
||||
public class Language {
|
||||
private String key;
|
||||
|
|
|
|||
|
|
@ -2,8 +2,8 @@ package eu.eudat.configurations.dynamicproject.entities;
|
|||
|
||||
import eu.eudat.logic.proxy.config.UrlConfiguration;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlElementWrapper;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElementWrapper;
|
||||
import java.util.List;
|
||||
|
||||
public class MainProperty {
|
||||
|
|
|
|||
|
|
@ -1,8 +1,8 @@
|
|||
package eu.eudat.configurations.dynamicproject.entities;
|
||||
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlElementWrapper;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElementWrapper;
|
||||
import java.util.List;
|
||||
|
||||
public class Property {
|
||||
|
|
|
|||
|
|
@ -9,9 +9,7 @@ import eu.eudat.models.data.components.commons.datafield.AutoCompleteData;
|
|||
import eu.eudat.models.data.externaldataset.ExternalAutocompleteFieldModel;
|
||||
import eu.eudat.models.data.helpers.common.AutoCompleteLookupItem;
|
||||
import eu.eudat.models.data.helpers.responses.ResponseItem;
|
||||
import eu.eudat.models.data.properties.PropertiesModel;
|
||||
import eu.eudat.models.data.security.Principal;
|
||||
import org.json.JSONObject;
|
||||
import org.springframework.beans.factory.annotation.Autowired;
|
||||
import org.springframework.http.HttpStatus;
|
||||
import org.springframework.http.ResponseEntity;
|
||||
|
|
@ -19,9 +17,7 @@ import org.springframework.transaction.annotation.Transactional;
|
|||
import org.springframework.web.bind.annotation.*;
|
||||
|
||||
import javax.xml.xpath.XPathExpressionException;
|
||||
import java.util.HashMap;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
import java.util.UUID;
|
||||
|
||||
import static eu.eudat.types.Authorities.ADMIN;
|
||||
|
|
|
|||
|
|
@ -14,7 +14,7 @@ import org.springframework.http.ResponseEntity;
|
|||
import org.springframework.transaction.annotation.Transactional;
|
||||
import org.springframework.web.bind.annotation.*;
|
||||
|
||||
import javax.xml.bind.JAXBException;
|
||||
import jakarta.xml.bind.JAXBException;
|
||||
import java.io.IOException;
|
||||
import java.util.List;
|
||||
import java.util.UUID;
|
||||
|
|
@ -52,7 +52,6 @@ public class UserInvitationController extends BaseController {
|
|||
public @ResponseBody
|
||||
// ResponseEntity<ResponseItem<List<UserInfoInvitationModel>>> getUsers(Principal principal) throws IllegalAccessException, InstantiationException {
|
||||
ResponseEntity<ResponseItem<List<UserInfoInvitationModel>>> getUsers(Principal principal, @RequestBody UserInfoRequestItem userInfoRequestItem) throws IllegalAccessException, InstantiationException {
|
||||
System.out.println(userInfoRequestItem.getCriteria().getLike());
|
||||
// List<UserInfoInvitationModel> users = invitationsManager.getUsers(principal);
|
||||
List<UserInfoInvitationModel> users = invitationsManager.getUsersWithCriteria(principal, userInfoRequestItem);
|
||||
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<List<UserInfoInvitationModel>>().status(ApiMessageCode.SUCCESS_MESSAGE).payload(users));
|
||||
|
|
|
|||
|
|
@ -1,7 +1,6 @@
|
|||
package eu.eudat.logic.managers;
|
||||
|
||||
import com.fasterxml.jackson.core.JsonParser;
|
||||
import com.fasterxml.jackson.databind.JsonNode;
|
||||
import com.fasterxml.jackson.core.JsonProcessingException;
|
||||
import com.fasterxml.jackson.databind.ObjectMapper;
|
||||
import eu.eudat.configurations.dynamicgrant.DynamicGrantConfiguration;
|
||||
import eu.eudat.configurations.dynamicgrant.entities.Property;
|
||||
|
|
@ -61,10 +60,12 @@ import eu.eudat.models.data.userinfo.UserListingModel;
|
|||
import eu.eudat.queryable.QueryableList;
|
||||
import eu.eudat.types.Authorities;
|
||||
import eu.eudat.types.MetricNames;
|
||||
import jakarta.xml.bind.JAXBContext;
|
||||
import jakarta.xml.bind.JAXBException;
|
||||
import jakarta.xml.bind.Unmarshaller;
|
||||
import org.apache.poi.xwpf.usermodel.XWPFDocument;
|
||||
import org.apache.poi.xwpf.usermodel.XWPFParagraph;
|
||||
import org.apache.poi.xwpf.usermodel.XWPFRun;
|
||||
import org.json.JSONObject;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
import org.springframework.beans.factory.annotation.Autowired;
|
||||
|
|
@ -80,9 +81,6 @@ import org.w3c.dom.Document;
|
|||
import org.w3c.dom.Element;
|
||||
|
||||
import javax.transaction.Transactional;
|
||||
import javax.xml.bind.JAXBContext;
|
||||
import javax.xml.bind.JAXBException;
|
||||
import javax.xml.bind.Unmarshaller;
|
||||
import java.io.*;
|
||||
import java.math.BigInteger;
|
||||
import java.nio.file.Files;
|
||||
|
|
@ -299,15 +297,21 @@ public class DataManagementPlanManager {
|
|||
.filter(dataset -> !dataset.getStatus().equals(Dataset.Status.DELETED) && !dataset.getStatus().equals(Dataset.Status.CANCELED))
|
||||
.forEach(dataset -> {
|
||||
dataManagementPlan.getDatasets().stream().filter(datasetWizardModel -> datasetWizardModel.getId().equals(dataset.getId())).forEach(datasetWizardModel -> {
|
||||
DatasetWizardModel wizardModel = datasetManager.getSingle(datasetWizardModel.getId().toString(), principal);
|
||||
DatasetWizardModel wizardModel;
|
||||
try {
|
||||
wizardModel = datasetManager.getSingle(datasetWizardModel.getId().toString(), principal);
|
||||
datasetWizardModel.setDatasetProfileDefinition(wizardModel.getDatasetProfileDefinition());
|
||||
datasetWizardModel.setTags(wizardModel.getTags());
|
||||
} catch (JsonProcessingException e) {
|
||||
logger.error(e.getLocalizedMessage(), e);
|
||||
}
|
||||
|
||||
});
|
||||
});
|
||||
if (isPublic) {
|
||||
dataManagementPlan.setDatasets(dataManagementPlan.getDatasets().stream().filter(dataset -> dataset.getStatus() == Dataset.Status.FINALISED.getValue()).collect(Collectors.toList()));
|
||||
}
|
||||
Map dmpProperties = dataManagementPlanEntity.getDmpProperties() != null ? new org.json.JSONObject(dataManagementPlanEntity.getDmpProperties()).toMap() : null;
|
||||
Map dmpProperties = dataManagementPlanEntity.getDmpProperties() != null ? apiContext.getObjectMapper().readValue(dataManagementPlanEntity.getDmpProperties(), HashMap.class) : null;
|
||||
|
||||
if (dmpProperties != null && dataManagementPlan.getDynamicFields() != null)
|
||||
dataManagementPlan.getDynamicFields().forEach(item -> {
|
||||
|
|
@ -1305,10 +1309,11 @@ public class DataManagementPlanManager {
|
|||
datasetDescriptionRun.setBold(true);
|
||||
datasetDescriptionRun.setFontSize(12);
|
||||
|
||||
PagedDatasetProfile pagedDatasetProfile = datasetManager.getPagedProfile(dataset, datasetEntity);
|
||||
PagedDatasetProfile pagedDatasetProfile = null;
|
||||
try {
|
||||
pagedDatasetProfile = datasetManager.getPagedProfile(dataset, datasetEntity);
|
||||
visibilityRuleService.setProperties(properties);
|
||||
visibilityRuleService.buildVisibilityContext(pagedDatasetProfile.getRules());
|
||||
try {
|
||||
wordBuilder.build(document, pagedDatasetProfile, visibilityRuleService);
|
||||
} catch (IOException e) {
|
||||
logger.error(e.getMessage(), e);
|
||||
|
|
@ -1456,8 +1461,7 @@ public class DataManagementPlanManager {
|
|||
DatasetWizardModel datasetWizardModel = new DatasetWizardModel();
|
||||
Map<String, Object> properties = new HashMap<>();
|
||||
if (dataset.getProperties() != null) {
|
||||
JSONObject jobject = new JSONObject(dataset.getProperties());
|
||||
properties = jobject.toMap();
|
||||
properties = apiContext.getObjectMapper().readValue(dataset.getProperties(), HashMap.class);
|
||||
}
|
||||
PagedDatasetProfile pagedDatasetProfile = datasetManager.getPagedProfile(datasetWizardModel, dataset);
|
||||
visibilityRuleService.setProperties(properties);
|
||||
|
|
@ -2017,7 +2021,7 @@ public class DataManagementPlanManager {
|
|||
headers.setAccept(Collections.singletonList(MediaType.APPLICATION_JSON));
|
||||
headers.setContentType(MediaType.APPLICATION_JSON);
|
||||
String createData = null;
|
||||
Map<String, Object> extraProperties = dmp.getExtraProperties() != null ? new org.json.JSONObject(dmp.getExtraProperties()).toMap() : new HashMap<>();
|
||||
Map<String, Object> extraProperties = dmp.getExtraProperties() != null ? apiContext.getObjectMapper().readValue(dmp.getExtraProperties(), HashMap.class) : new HashMap<>();
|
||||
StringBuilder dataBuilder = new StringBuilder();
|
||||
dataBuilder.append("{\n \"metadata\": {\n");
|
||||
dataBuilder.append( " \"title\": \"").append(dmp.getLabel()).append("\",\n");
|
||||
|
|
|
|||
|
|
@ -1,7 +1,7 @@
|
|||
package eu.eudat.logic.managers;
|
||||
|
||||
import com.fasterxml.jackson.core.JsonProcessingException;
|
||||
import com.fasterxml.jackson.databind.JsonNode;
|
||||
import com.fasterxml.jackson.databind.ObjectMapper;
|
||||
import eu.eudat.data.dao.criteria.*;
|
||||
import eu.eudat.data.dao.entities.DataRepositoryDao;
|
||||
import eu.eudat.data.dao.entities.DatasetDao;
|
||||
|
|
@ -49,22 +49,22 @@ import eu.eudat.models.data.user.composite.PagedDatasetProfile;
|
|||
import eu.eudat.queryable.QueryableList;
|
||||
import eu.eudat.types.Authorities;
|
||||
import eu.eudat.types.MetricNames;
|
||||
import org.apache.commons.io.IOUtils;
|
||||
import jakarta.xml.bind.JAXBContext;
|
||||
import jakarta.xml.bind.JAXBException;
|
||||
import jakarta.xml.bind.Unmarshaller;
|
||||
import org.apache.poi.xwpf.extractor.XWPFWordExtractor;
|
||||
import org.apache.poi.xwpf.usermodel.XWPFDocument;
|
||||
import org.apache.poi.xwpf.usermodel.XWPFParagraph;
|
||||
import org.apache.poi.xwpf.usermodel.XWPFRun;
|
||||
import org.json.JSONArray;
|
||||
import org.json.JSONObject;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
import org.springframework.beans.factory.annotation.Autowired;
|
||||
import org.springframework.core.env.Environment;
|
||||
import org.springframework.core.io.FileSystemResource;
|
||||
import org.springframework.http.*;
|
||||
import org.springframework.http.HttpHeaders;
|
||||
import org.springframework.http.HttpStatus;
|
||||
import org.springframework.http.MediaType;
|
||||
import org.springframework.http.ResponseEntity;
|
||||
import org.springframework.stereotype.Component;
|
||||
import org.springframework.util.LinkedMultiValueMap;
|
||||
import org.springframework.web.client.RestTemplate;
|
||||
import org.springframework.web.multipart.MultipartFile;
|
||||
import org.w3c.dom.Document;
|
||||
import org.w3c.dom.Element;
|
||||
|
|
@ -75,9 +75,6 @@ import javax.activation.MimetypesFileTypeMap;
|
|||
import javax.persistence.criteria.Join;
|
||||
import javax.persistence.criteria.JoinType;
|
||||
import javax.transaction.Transactional;
|
||||
import javax.xml.bind.JAXBContext;
|
||||
import javax.xml.bind.JAXBException;
|
||||
import javax.xml.bind.Unmarshaller;
|
||||
import javax.xml.parsers.DocumentBuilder;
|
||||
import javax.xml.parsers.DocumentBuilderFactory;
|
||||
import javax.xml.xpath.XPath;
|
||||
|
|
@ -91,8 +88,6 @@ import java.time.temporal.ChronoUnit;
|
|||
import java.util.*;
|
||||
import java.util.stream.Collectors;
|
||||
import java.util.stream.Stream;
|
||||
import java.util.zip.ZipEntry;
|
||||
import java.util.zip.ZipInputStream;
|
||||
|
||||
@Component
|
||||
public class DatasetManager {
|
||||
|
|
@ -279,7 +274,7 @@ public class DatasetManager {
|
|||
return dataTable;
|
||||
}
|
||||
|
||||
public DatasetWizardModel getSingle(String id, Principal principal) {
|
||||
public DatasetWizardModel getSingle(String id, Principal principal) throws JsonProcessingException {
|
||||
DatasetWizardModel dataset = new DatasetWizardModel();
|
||||
eu.eudat.data.entities.Dataset datasetEntity = databaseRepository.getDatasetDao().find(UUID.fromString(id), HintedModelFactory.getHint(DatasetWizardModel.class));
|
||||
if (datasetEntity.getDmp().getUsers()
|
||||
|
|
@ -380,12 +375,11 @@ public class DatasetManager {
|
|||
return databaseRepository.getDatasetDao().find(id);
|
||||
}
|
||||
|
||||
public PagedDatasetProfile getPagedProfile(DatasetWizardModel dataset, eu.eudat.data.entities.Dataset datasetEntity) {
|
||||
public PagedDatasetProfile getPagedProfile(DatasetWizardModel dataset, eu.eudat.data.entities.Dataset datasetEntity) throws JsonProcessingException {
|
||||
eu.eudat.models.data.user.composite.DatasetProfile datasetprofile = userManager.generateDatasetProfileModel(datasetEntity.getProfile());
|
||||
datasetprofile.setStatus(dataset.getStatus());
|
||||
if (datasetEntity.getProperties() != null) {
|
||||
JSONObject jObject = new JSONObject(datasetEntity.getProperties());
|
||||
Map<String, Object> properties = jObject.toMap();
|
||||
Map<String, Object> properties = apiContext.getObjectMapper().readValue(datasetEntity.getProperties(), HashMap.class);
|
||||
datasetprofile.fromJsonObject(properties);
|
||||
}
|
||||
PagedDatasetProfile pagedDatasetProfile = new PagedDatasetProfile();
|
||||
|
|
@ -451,8 +445,7 @@ public class DatasetManager {
|
|||
|
||||
Map<String, Object> properties = new HashMap<>();
|
||||
if (datasetEntity.getProperties() != null) {
|
||||
JSONObject jObject = new JSONObject(datasetEntity.getProperties());
|
||||
properties = jObject.toMap();
|
||||
properties = apiContext.getObjectMapper().readValue(datasetEntity.getProperties(), HashMap.class);
|
||||
}
|
||||
|
||||
wordBuilder.addParagraphContent("Dataset Description", document, ParagraphStyle.HEADER2, BigInteger.ZERO);
|
||||
|
|
@ -484,8 +477,7 @@ public class DatasetManager {
|
|||
|
||||
Map<String, Object> properties = new HashMap<>();
|
||||
if (dataset.getDatasetProfileDefinition() != null) {
|
||||
JSONObject jObject = new JSONObject(propertiesModelToString(dataset.getDatasetProfileDefinition()));
|
||||
properties = jObject.toMap();
|
||||
properties = apiContext.getObjectMapper().readValue(propertiesModelToString(dataset.getDatasetProfileDefinition()), HashMap.class);
|
||||
}
|
||||
|
||||
wordBuilder.addParagraphContent("Dataset Description", document, ParagraphStyle.HEADER2, BigInteger.ZERO);
|
||||
|
|
@ -542,8 +534,7 @@ public class DatasetManager {
|
|||
throw new UnauthorisedException();
|
||||
Map<String, Object> properties = new HashMap<>();
|
||||
if (datasetEntity.getProperties() != null) {
|
||||
JSONObject jobject = new JSONObject(datasetEntity.getProperties());
|
||||
properties = jobject.toMap();
|
||||
properties = apiContext.getObjectMapper().readValue(datasetEntity.getProperties(), HashMap.class);
|
||||
}
|
||||
PagedDatasetProfile pagedDatasetProfile = getPagedProfile(dataset, datasetEntity);
|
||||
visibilityRuleService.setProperties(properties);
|
||||
|
|
@ -656,9 +647,9 @@ public class DatasetManager {
|
|||
nodeList = (NodeList) xPath.compile(expression).evaluate(xmlDocument, XPathConstants.NODESET);
|
||||
|
||||
|
||||
JSONObject obj = new JSONObject(dataset.getProperties());
|
||||
Map<String, Object> obj = apiContext.getObjectMapper().readValue(dataset.getProperties(), HashMap.class);
|
||||
VisibilityRuleService visibilityRuleService = this.apiContext.getUtilitiesService().getVisibilityRuleService();
|
||||
visibilityRuleService.setProperties(obj.toMap());
|
||||
visibilityRuleService.setProperties(obj);
|
||||
|
||||
dataset.setProfile(profile);
|
||||
PagedDatasetProfile pagedDatasetProfile = this.getPagedProfile(new DatasetWizardModel(), dataset);
|
||||
|
|
@ -666,7 +657,7 @@ public class DatasetManager {
|
|||
|
||||
|
||||
for (String validator : datasetProfileValidators) {
|
||||
if ((obj.has(validator) && (obj.getString(validator) == null || obj.getString(validator).trim().isEmpty())) && isElementVisible(nodeList, validator, visibilityRuleService)) {
|
||||
if ((obj.containsKey(validator) && (obj.get(validator) == null || obj.get(validator).toString().trim().isEmpty())) && isElementVisible(nodeList, validator, visibilityRuleService)) {
|
||||
throw new Exception("Field value of " + validator + " must be filled.");
|
||||
}
|
||||
}
|
||||
|
|
@ -695,11 +686,10 @@ public class DatasetManager {
|
|||
}
|
||||
}
|
||||
|
||||
private String propertiesModelToString(PagedDatasetProfile pagedDatasetProfile) {
|
||||
private String propertiesModelToString(PagedDatasetProfile pagedDatasetProfile) throws JsonProcessingException {
|
||||
Map<String, Object> values = new LinkedHashMap<>();
|
||||
pagedDatasetProfile.toMap(values);
|
||||
JSONObject jobject = new JSONObject(values);
|
||||
return jobject.toString();
|
||||
return apiContext.getObjectMapper().writeValueAsString(values);
|
||||
}
|
||||
|
||||
public void updateTags(Dataset datasetEntity, List<Tag> tags) throws Exception {
|
||||
|
|
@ -908,12 +898,9 @@ public class DatasetManager {
|
|||
)))))
|
||||
.collect(Collectors.toMap(DatasetImportField::getId, DatasetImportField::getValue));
|
||||
|
||||
// Transforms map into json file.
|
||||
JSONObject jsonDatasetProperties = new JSONObject(importMap);
|
||||
|
||||
// Creates the entity data set to save.
|
||||
eu.eudat.data.entities.Dataset entity = new Dataset();
|
||||
entity.setProperties(jsonDatasetProperties.toString());
|
||||
entity.setProperties(apiContext.getObjectMapper().writeValueAsString(importMap));
|
||||
entity.setLabel(importFile.getOriginalFilename());
|
||||
DMP dmp = new DMP();
|
||||
dmp.setId(UUID.fromString(dmpId));
|
||||
|
|
@ -942,7 +929,7 @@ public class DatasetManager {
|
|||
// TODO: When tags functionality return.
|
||||
}
|
||||
|
||||
public DatasetWizardModel datasetUpdateProfile(String id) {
|
||||
public DatasetWizardModel datasetUpdateProfile(String id) throws JsonProcessingException {
|
||||
DatasetWizardModel dataset = new DatasetWizardModel();
|
||||
eu.eudat.data.entities.Dataset datasetEntity = databaseRepository.getDatasetDao().find(UUID.fromString(id), HintedModelFactory.getHint(DatasetWizardModel.class));
|
||||
eu.eudat.elastic.entities.Dataset datasetElastic;
|
||||
|
|
@ -982,12 +969,11 @@ public class DatasetManager {
|
|||
return dataset;
|
||||
}
|
||||
|
||||
public PagedDatasetProfile getLatestDatasetProfile(Dataset datasetEntity, DatasetProfile profile) {
|
||||
public PagedDatasetProfile getLatestDatasetProfile(Dataset datasetEntity, DatasetProfile profile) throws JsonProcessingException {
|
||||
eu.eudat.models.data.user.composite.DatasetProfile datasetprofile = userManager.generateDatasetProfileModel(profile);
|
||||
datasetprofile.setStatus(datasetEntity.getStatus());
|
||||
if (datasetEntity.getProperties() != null) {
|
||||
JSONObject jobject = new JSONObject(datasetEntity.getProperties());
|
||||
Map<String, Object> properties = jobject.toMap();
|
||||
Map<String, Object> properties = apiContext.getObjectMapper().readValue(datasetEntity.getProperties(), HashMap.class);
|
||||
datasetprofile.fromJsonObject(properties);
|
||||
}
|
||||
PagedDatasetProfile pagedDatasetProfile = new PagedDatasetProfile();
|
||||
|
|
@ -1039,9 +1025,8 @@ public class DatasetManager {
|
|||
public void getTagsFromProfile(DatasetWizardModel wizardModel, Dataset dataset) throws IOException {
|
||||
dataset.setProfile(apiContext.getOperationsContext().getDatabaseRepository().getDatasetProfileDao().find(dataset.getProfile().getId()));
|
||||
wizardModel.setDatasetProfileDefinition(this.getPagedProfile(wizardModel, dataset));
|
||||
ObjectMapper mapper = new ObjectMapper();
|
||||
String json = mapper.writeValueAsString(wizardModel.getDatasetProfileDefinition());
|
||||
JsonNode propertiesJson = mapper.readTree(json);
|
||||
String json = apiContext.getObjectMapper().writeValueAsString(wizardModel.getDatasetProfileDefinition());
|
||||
JsonNode propertiesJson = apiContext.getObjectMapper().readTree(json);
|
||||
DatasetCriteria criteria = new DatasetCriteria();
|
||||
criteria.setHasTags(true);
|
||||
List<Tag> tags = apiContext.getOperationsContext().getElasticRepository().getDatasetRepository().query(criteria).stream().map(eu.eudat.elastic.entities.Dataset::getTags).flatMap(Collection::stream).filter(StreamDistinctBy.distinctByKey(Tag::getId)).collect(Collectors.toList());
|
||||
|
|
@ -1053,11 +1038,20 @@ public class DatasetManager {
|
|||
JsonNode value = node.get("value");
|
||||
if (!value.toString().equals("\"\"")) {
|
||||
String stringValue = value.toString().replaceAll("=", ":");
|
||||
JSONArray values = new JSONArray(stringValue);
|
||||
List<Map<String, Object>> values = null;
|
||||
try {
|
||||
values = apiContext.getObjectMapper().readValue(stringValue, LinkedList.class);
|
||||
} catch (JsonProcessingException e) {
|
||||
logger.error(e.getLocalizedMessage(), e);
|
||||
}
|
||||
if (values != null) {
|
||||
values.iterator().forEachRemaining(element -> {
|
||||
Map<String, Object> data = ((JSONObject) element).toMap();
|
||||
Map<String, Object> data = element;
|
||||
this.addTag(tags, wizardModel.getTags(), data.get("id").toString(), data.get("name").toString());
|
||||
});
|
||||
} else {
|
||||
this.addTag(tags, wizardModel.getTags(), "", value.asText());
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
|
|
|||
|
|
@ -60,9 +60,8 @@ public class ExternalDatasetManager {
|
|||
List<Map<String, String>> remoteRepos = remoteFetcher.getDatasets(externalUrlCriteria, type);
|
||||
|
||||
// Parse items from external sources to listing models.
|
||||
ObjectMapper mapper = new ObjectMapper().configure(DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES, false);
|
||||
List<ExternalDatasetListingModel> externalDatasetModels = remoteRepos.stream()
|
||||
.map(item -> mapper.convertValue(item, ExternalDatasetListingModel.class))
|
||||
.map(item -> apiContext.getObjectMapper().convertValue(item, ExternalDatasetListingModel.class))
|
||||
.collect(Collectors.toCollection(LinkedList::new));
|
||||
|
||||
// Merge fetched and local.
|
||||
|
|
|
|||
|
|
@ -15,9 +15,9 @@ import eu.eudat.queryable.QueryableList;
|
|||
import org.springframework.beans.factory.annotation.Autowired;
|
||||
import org.springframework.stereotype.Component;
|
||||
|
||||
import javax.xml.bind.JAXBContext;
|
||||
import javax.xml.bind.JAXBException;
|
||||
import javax.xml.bind.Unmarshaller;
|
||||
import jakarta.xml.bind.JAXBContext;
|
||||
import jakarta.xml.bind.JAXBException;
|
||||
import jakarta.xml.bind.Unmarshaller;
|
||||
import java.io.IOException;
|
||||
import java.io.StringReader;
|
||||
import java.util.*;
|
||||
|
|
|
|||
|
|
@ -40,8 +40,7 @@ public class LicenseManager {
|
|||
|
||||
List<LicenseModel> licenseModels = new LinkedList<>();
|
||||
|
||||
ObjectMapper mapper = new ObjectMapper().configure(DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES, false);
|
||||
licenseModels.addAll(remoteRepos.stream().map(item -> mapper.convertValue(item, LicenseModel.class)).collect(Collectors.toList()));
|
||||
licenseModels.addAll(remoteRepos.stream().map(item -> apiContext.getObjectMapper().convertValue(item, LicenseModel.class)).collect(Collectors.toList()));
|
||||
licenseModels = licenseModels.stream().filter(licenseModel -> licenseModel.getName().toLowerCase().contains(query.toLowerCase())).collect(Collectors.toList());
|
||||
return licenseModels;
|
||||
}
|
||||
|
|
|
|||
|
|
@ -51,7 +51,7 @@ public class NotificationManager {
|
|||
notification.setNotifiedAt(new Date());
|
||||
notification.setUpdatedAt(new Date());
|
||||
try {
|
||||
Map<String, String> data = new ObjectMapper().readValue(notification.getData(), HashMap.class);
|
||||
Map<String, String> data = apiContext.getObjectMapper().readValue(notification.getData(), HashMap.class);
|
||||
UserInfo userInfo = this.apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().find(UUID.fromString(data.get("userId")));
|
||||
String subjectTemplate = "";
|
||||
String contentTemplate = "";
|
||||
|
|
|
|||
|
|
@ -46,8 +46,7 @@ public class ServiceManager {
|
|||
List<Service> serviceList = (this.apiContext.getOperationsContext().getDatabaseRepository().getServiceDao().getWithCriteria(criteria)).toList();
|
||||
serviceModels = serviceList.stream().map(item -> new ServiceModel().fromDataModel(item)).collect(Collectors.toList());
|
||||
}
|
||||
ObjectMapper mapper = new ObjectMapper().configure(DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES, false);
|
||||
serviceModels.addAll(remoteRepos.stream().map(item -> mapper.convertValue(item, ServiceModel.class)).collect(Collectors.toList()));
|
||||
serviceModels.addAll(remoteRepos.stream().map(item -> apiContext.getObjectMapper().convertValue(item, ServiceModel.class)).collect(Collectors.toList()));
|
||||
|
||||
return serviceModels;
|
||||
}
|
||||
|
|
|
|||
|
|
@ -33,7 +33,6 @@ import eu.eudat.models.data.userinfo.UserProfile;
|
|||
import eu.eudat.queryable.QueryableList;
|
||||
import eu.eudat.types.Authorities;
|
||||
|
||||
import org.json.JSONObject;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
import org.springframework.beans.factory.annotation.Autowired;
|
||||
|
|
@ -133,7 +132,7 @@ public class UserManager {
|
|||
userInfo.setName(settings.entrySet().stream().filter(entry -> entry.getKey().equals("name")).filter(Objects::nonNull).map(entry -> entry.getValue().toString()).findFirst().orElse(userInfo.getName()));
|
||||
settings.remove("name");
|
||||
result.putAll(settings);
|
||||
userInfo.setAdditionalinfo(new JSONObject(result).toString());
|
||||
userInfo.setAdditionalinfo(new ObjectMapper().writeValueAsString(result));
|
||||
apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao()
|
||||
.createOrUpdate(userInfo);
|
||||
}
|
||||
|
|
|
|||
|
|
@ -1,6 +1,6 @@
|
|||
package eu.eudat.logic.proxy.config;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
|
||||
/**
|
||||
* Created by ikalyvas on 6/29/2018.
|
||||
|
|
|
|||
|
|
@ -1,6 +1,6 @@
|
|||
package eu.eudat.logic.proxy.config;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
|
||||
public class DataSearchConfiguration {
|
||||
private String type;
|
||||
|
|
|
|||
|
|
@ -1,7 +1,7 @@
|
|||
package eu.eudat.logic.proxy.config;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlElementWrapper;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElementWrapper;
|
||||
import java.util.List;
|
||||
|
||||
/**
|
||||
|
|
|
|||
|
|
@ -4,10 +4,10 @@ package eu.eudat.logic.proxy.config;
|
|||
import eu.eudat.logic.proxy.config.entities.*;
|
||||
import eu.eudat.logic.proxy.config.prefilling.PrefillingConfigMapAdapter;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlElementWrapper;
|
||||
import javax.xml.bind.annotation.XmlRootElement;
|
||||
import javax.xml.bind.annotation.adapters.XmlJavaTypeAdapter;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElementWrapper;
|
||||
import jakarta.xml.bind.annotation.XmlRootElement;
|
||||
import jakarta.xml.bind.annotation.adapters.XmlJavaTypeAdapter;
|
||||
import java.io.Serializable;
|
||||
import java.util.Map;
|
||||
|
||||
|
|
|
|||
|
|
@ -1,7 +1,7 @@
|
|||
package eu.eudat.logic.proxy.config;
|
||||
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
|
||||
public class UrlConfiguration {
|
||||
|
||||
|
|
|
|||
|
|
@ -1,9 +1,10 @@
|
|||
package eu.eudat.logic.proxy.config.configloaders;
|
||||
|
||||
import com.fasterxml.jackson.databind.DeserializationFeature;
|
||||
import com.fasterxml.jackson.databind.ObjectMapper;
|
||||
import eu.eudat.logic.proxy.config.ExternalUrls;
|
||||
import eu.eudat.logic.security.customproviders.ConfigurableProvider.entities.ConfigurableProviders;
|
||||
import jakarta.xml.bind.JAXBContext;
|
||||
import jakarta.xml.bind.Unmarshaller;
|
||||
import org.apache.poi.xwpf.usermodel.XWPFDocument;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
|
|
@ -15,8 +16,6 @@ import org.w3c.dom.Node;
|
|||
import org.w3c.dom.NodeList;
|
||||
import org.xml.sax.SAXException;
|
||||
|
||||
import javax.xml.bind.JAXBContext;
|
||||
import javax.xml.bind.Unmarshaller;
|
||||
import javax.xml.parsers.DocumentBuilder;
|
||||
import javax.xml.parsers.DocumentBuilderFactory;
|
||||
import javax.xml.parsers.ParserConfigurationException;
|
||||
|
|
@ -106,7 +105,7 @@ public class DefaultConfigLoader implements ConfigLoader {
|
|||
InputStream is = null;
|
||||
try {
|
||||
is = getStreamFromPath(filePath);
|
||||
ObjectMapper mapper = new ObjectMapper().configure(DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES, false);
|
||||
ObjectMapper mapper = new ObjectMapper();
|
||||
this.configurableProviders = mapper.readValue(is, ConfigurableProviders.class);
|
||||
} catch (IOException | NullPointerException e) {
|
||||
logger.error(e.getMessage(), e);
|
||||
|
|
|
|||
|
|
@ -15,8 +15,8 @@ import org.w3c.dom.Node;
|
|||
import org.w3c.dom.NodeList;
|
||||
import org.xml.sax.SAXException;
|
||||
|
||||
import javax.xml.bind.JAXBContext;
|
||||
import javax.xml.bind.Unmarshaller;
|
||||
import jakarta.xml.bind.JAXBContext;
|
||||
import jakarta.xml.bind.Unmarshaller;
|
||||
import javax.xml.parsers.DocumentBuilder;
|
||||
import javax.xml.parsers.DocumentBuilderFactory;
|
||||
import javax.xml.parsers.ParserConfigurationException;
|
||||
|
|
|
|||
|
|
@ -3,8 +3,8 @@ package eu.eudat.logic.proxy.config.entities;
|
|||
import eu.eudat.logic.proxy.config.FetchStrategy;
|
||||
import eu.eudat.logic.proxy.config.UrlConfiguration;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlElementWrapper;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElementWrapper;
|
||||
import java.util.List;
|
||||
|
||||
|
||||
|
|
|
|||
|
|
@ -1,7 +1,7 @@
|
|||
package eu.eudat.logic.proxy.config.entities;
|
||||
|
||||
import javax.xml.bind.annotation.XmlAttribute;
|
||||
import javax.xml.bind.annotation.XmlRootElement;
|
||||
import jakarta.xml.bind.annotation.XmlAttribute;
|
||||
import jakarta.xml.bind.annotation.XmlRootElement;
|
||||
|
||||
@XmlRootElement(name = "mapping")
|
||||
public class DefaultPrefillingMapping implements PrefillingMapping{
|
||||
|
|
|
|||
|
|
@ -3,8 +3,8 @@ package eu.eudat.logic.proxy.config.entities;
|
|||
import eu.eudat.logic.proxy.config.FetchStrategy;
|
||||
import eu.eudat.logic.proxy.config.UrlConfiguration;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlElementWrapper;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElementWrapper;
|
||||
import java.util.List;
|
||||
|
||||
public class FunderUrls extends GenericUrls{
|
||||
|
|
|
|||
|
|
@ -3,8 +3,8 @@ package eu.eudat.logic.proxy.config.entities;
|
|||
import eu.eudat.logic.proxy.config.FetchStrategy;
|
||||
import eu.eudat.logic.proxy.config.UrlConfiguration;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlElementWrapper;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElementWrapper;
|
||||
import java.util.List;
|
||||
|
||||
|
||||
|
|
|
|||
|
|
@ -3,8 +3,8 @@ package eu.eudat.logic.proxy.config.entities;
|
|||
import eu.eudat.logic.proxy.config.FetchStrategy;
|
||||
import eu.eudat.logic.proxy.config.UrlConfiguration;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlElementWrapper;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElementWrapper;
|
||||
import java.util.List;
|
||||
|
||||
|
||||
|
|
|
|||
|
|
@ -3,8 +3,8 @@ package eu.eudat.logic.proxy.config.entities;
|
|||
import eu.eudat.logic.proxy.config.FetchStrategy;
|
||||
import eu.eudat.logic.proxy.config.UrlConfiguration;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlElementWrapper;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElementWrapper;
|
||||
import java.util.List;
|
||||
|
||||
public class OrganisationUrls extends GenericUrls{
|
||||
|
|
|
|||
|
|
@ -1,7 +1,7 @@
|
|||
package eu.eudat.logic.proxy.config.entities;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlRootElement;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlRootElement;
|
||||
|
||||
@XmlRootElement(name = "config")
|
||||
public class PrefillingConfig {
|
||||
|
|
|
|||
|
|
@ -1,7 +1,7 @@
|
|||
package eu.eudat.logic.proxy.config.entities;
|
||||
|
||||
import javax.xml.bind.annotation.XmlAttribute;
|
||||
import javax.xml.bind.annotation.XmlRootElement;
|
||||
import jakarta.xml.bind.annotation.XmlAttribute;
|
||||
import jakarta.xml.bind.annotation.XmlRootElement;
|
||||
|
||||
@XmlRootElement(name = "fixedMapping")
|
||||
public class PrefillingFixedMapping implements PrefillingMapping{
|
||||
|
|
|
|||
|
|
@ -1,7 +1,7 @@
|
|||
package eu.eudat.logic.proxy.config.entities;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlElementWrapper;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElementWrapper;
|
||||
import java.util.List;
|
||||
|
||||
public class PrefillingGet{
|
||||
|
|
@ -23,7 +23,7 @@ public class PrefillingGet{
|
|||
}
|
||||
|
||||
@XmlElement(name = "mapping")
|
||||
@XmlElementWrapper
|
||||
@XmlElementWrapper(name = "mappings")
|
||||
public void setMappings(List<DefaultPrefillingMapping> mappings) {
|
||||
this.mappings = mappings;
|
||||
}
|
||||
|
|
@ -33,7 +33,7 @@ public class PrefillingGet{
|
|||
}
|
||||
|
||||
@XmlElement(name = "fixedMapping")
|
||||
@XmlElementWrapper
|
||||
@XmlElementWrapper (name = "fixedMappings")
|
||||
public void setFixedMappings(List<PrefillingFixedMapping> fixedMappings) {
|
||||
this.fixedMappings = fixedMappings;
|
||||
}
|
||||
|
|
|
|||
|
|
@ -1,7 +1,5 @@
|
|||
package eu.eudat.logic.proxy.config.entities;
|
||||
|
||||
import javax.xml.bind.annotation.XmlAttribute;
|
||||
|
||||
public interface PrefillingMapping {
|
||||
String getTarget();
|
||||
|
||||
|
|
|
|||
|
|
@ -3,7 +3,7 @@ package eu.eudat.logic.proxy.config.entities;
|
|||
import eu.eudat.logic.proxy.config.FetchStrategy;
|
||||
import eu.eudat.logic.proxy.config.UrlConfiguration;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import java.util.ArrayList;
|
||||
import java.util.List;
|
||||
|
||||
|
|
|
|||
|
|
@ -3,8 +3,8 @@ package eu.eudat.logic.proxy.config.entities;
|
|||
import eu.eudat.logic.proxy.config.FetchStrategy;
|
||||
import eu.eudat.logic.proxy.config.UrlConfiguration;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlElementWrapper;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElementWrapper;
|
||||
import java.util.List;
|
||||
|
||||
public class ProjectUrls extends GenericUrls{
|
||||
|
|
|
|||
|
|
@ -3,8 +3,8 @@ package eu.eudat.logic.proxy.config.entities;
|
|||
import eu.eudat.logic.proxy.config.FetchStrategy;
|
||||
import eu.eudat.logic.proxy.config.UrlConfiguration;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlElementWrapper;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElementWrapper;
|
||||
import java.util.List;
|
||||
|
||||
public class RegistryUrls extends GenericUrls{
|
||||
|
|
|
|||
|
|
@ -3,8 +3,8 @@ package eu.eudat.logic.proxy.config.entities;
|
|||
import eu.eudat.logic.proxy.config.FetchStrategy;
|
||||
import eu.eudat.logic.proxy.config.UrlConfiguration;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlElementWrapper;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElementWrapper;
|
||||
import java.util.List;
|
||||
|
||||
public class RepositoryUrls extends GenericUrls{
|
||||
|
|
|
|||
|
|
@ -3,8 +3,8 @@ package eu.eudat.logic.proxy.config.entities;
|
|||
import eu.eudat.logic.proxy.config.FetchStrategy;
|
||||
import eu.eudat.logic.proxy.config.UrlConfiguration;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlElementWrapper;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElementWrapper;
|
||||
import java.util.List;
|
||||
|
||||
public class ResearcherUrls extends GenericUrls{
|
||||
|
|
|
|||
|
|
@ -3,8 +3,8 @@ package eu.eudat.logic.proxy.config.entities;
|
|||
import eu.eudat.logic.proxy.config.FetchStrategy;
|
||||
import eu.eudat.logic.proxy.config.UrlConfiguration;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlElementWrapper;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElementWrapper;
|
||||
import java.util.List;
|
||||
|
||||
public class ServiceUrls extends GenericUrls{
|
||||
|
|
|
|||
|
|
@ -3,8 +3,8 @@ package eu.eudat.logic.proxy.config.entities;
|
|||
import eu.eudat.logic.proxy.config.FetchStrategy;
|
||||
import eu.eudat.logic.proxy.config.UrlConfiguration;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlElementWrapper;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElementWrapper;
|
||||
import java.util.List;
|
||||
|
||||
/**
|
||||
|
|
|
|||
|
|
@ -2,8 +2,8 @@ package eu.eudat.logic.proxy.config.entities;
|
|||
|
||||
import java.util.List;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlElementWrapper;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElementWrapper;
|
||||
|
||||
import eu.eudat.logic.proxy.config.FetchStrategy;
|
||||
import eu.eudat.logic.proxy.config.UrlConfiguration;
|
||||
|
|
|
|||
|
|
@ -3,9 +3,9 @@ package eu.eudat.logic.proxy.config.prefilling;
|
|||
import eu.eudat.logic.proxy.config.entities.PrefillingConfig;
|
||||
import org.w3c.dom.Element;
|
||||
|
||||
import javax.xml.bind.JAXBContext;
|
||||
import javax.xml.bind.Unmarshaller;
|
||||
import javax.xml.bind.annotation.adapters.XmlAdapter;
|
||||
import jakarta.xml.bind.JAXBContext;
|
||||
import jakarta.xml.bind.Unmarshaller;
|
||||
import jakarta.xml.bind.annotation.adapters.XmlAdapter;
|
||||
import java.util.HashMap;
|
||||
import java.util.Map;
|
||||
|
||||
|
|
@ -23,7 +23,6 @@ public class PrefillingConfigMapAdapter extends XmlAdapter<Object, Map<String, P
|
|||
String id = element.getChildNodes().item(i).getAttributes().getNamedItem("id").getNodeValue();
|
||||
PrefillingConfig prefillingConfig = (PrefillingConfig) jaxbUnmarshaller.unmarshal(element.getChildNodes().item(i));
|
||||
prefillingConfig = configMap.put(id, prefillingConfig);
|
||||
System.out.println(prefillingConfig);
|
||||
}
|
||||
return configMap;
|
||||
}
|
||||
|
|
|
|||
|
|
@ -3,17 +3,25 @@ package eu.eudat.logic.proxy.fetching;
|
|||
import com.fasterxml.jackson.databind.ObjectMapper;
|
||||
import eu.eudat.logic.proxy.fetching.entities.Config;
|
||||
import eu.eudat.logic.proxy.fetching.entities.ConfigSingle;
|
||||
import eu.eudat.logic.services.ApiContext;
|
||||
import org.springframework.beans.factory.annotation.Autowired;
|
||||
import org.springframework.cache.annotation.Cacheable;
|
||||
import org.springframework.stereotype.Component;
|
||||
|
||||
import javax.xml.bind.JAXBContext;
|
||||
import javax.xml.bind.Unmarshaller;
|
||||
import jakarta.xml.bind.JAXBContext;
|
||||
import jakarta.xml.bind.Unmarshaller;
|
||||
import java.io.InputStream;
|
||||
import java.lang.reflect.Method;
|
||||
import java.util.*;
|
||||
|
||||
@Component
|
||||
public class LocalFetcher {
|
||||
private final ApiContext apiContext;
|
||||
|
||||
@Autowired
|
||||
public LocalFetcher(ApiContext apiContext) {
|
||||
this.apiContext = apiContext;
|
||||
}
|
||||
|
||||
@Cacheable("currencies")
|
||||
public List<Map<String, String>> retrieveCurrency() throws Exception {
|
||||
|
|
@ -45,7 +53,6 @@ public class LocalFetcher {
|
|||
String camelCaseGetter =configSingle.getParseField() != null && !configSingle.getParseField().isEmpty() ? "get" + configSingle.getParseField().substring(0, 1).toUpperCase() + configSingle.getParseField().substring(1) : "";
|
||||
reader = aClass.getMethod(camelCaseGetter);
|
||||
}
|
||||
ObjectMapper objectMapper = new ObjectMapper();
|
||||
List<Map<String, String>> values = new ArrayList<>();
|
||||
int max = 1;
|
||||
if (reader != null) {
|
||||
|
|
@ -66,7 +73,7 @@ public class LocalFetcher {
|
|||
} else {
|
||||
value = object;
|
||||
}
|
||||
Map<String, String> map = objectMapper.convertValue(value, Map.class);
|
||||
Map<String, String> map = apiContext.getObjectMapper().convertValue(value, Map.class);
|
||||
result.add(new HashMap<>());
|
||||
result.get(result.size() - 1).put("name", map.get(configSingle.getName()));
|
||||
result.get(result.size() - 1).put("value", map.get(configSingle.getValue()));
|
||||
|
|
|
|||
|
|
@ -14,6 +14,7 @@ import eu.eudat.logic.proxy.config.entities.GenericUrls;
|
|||
import eu.eudat.logic.proxy.config.exceptions.HugeResultSet;
|
||||
import eu.eudat.logic.proxy.config.exceptions.NoURLFound;
|
||||
import eu.eudat.logic.proxy.fetching.entities.Results;
|
||||
import eu.eudat.logic.services.ApiContext;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
import org.springframework.beans.factory.annotation.Autowired;
|
||||
|
|
@ -22,8 +23,8 @@ import org.springframework.http.*;
|
|||
import org.springframework.stereotype.Service;
|
||||
import org.springframework.web.client.RestTemplate;
|
||||
|
||||
import javax.xml.bind.JAXBContext;
|
||||
import javax.xml.bind.Unmarshaller;
|
||||
import jakarta.xml.bind.JAXBContext;
|
||||
import jakarta.xml.bind.Unmarshaller;
|
||||
import java.io.File;
|
||||
import java.io.StringReader;
|
||||
import java.lang.reflect.Method;
|
||||
|
|
@ -34,8 +35,9 @@ import java.util.stream.Collectors;
|
|||
@Service
|
||||
public class RemoteFetcher {
|
||||
private static final Logger logger = LoggerFactory.getLogger(RemoteFetcher.class);
|
||||
private final static ObjectMapper mapper = new ObjectMapper();
|
||||
|
||||
private ConfigLoader configLoader;
|
||||
private final ConfigLoader configLoader;
|
||||
|
||||
@Autowired
|
||||
public RemoteFetcher(ConfigLoader configLoader) {
|
||||
|
|
@ -294,7 +296,7 @@ public class RemoteFetcher {
|
|||
headers.setAccept(Collections.singletonList(MediaType.valueOf(contentType)));
|
||||
headers.setContentType(MediaType.valueOf(contentType));
|
||||
}
|
||||
JsonNode jsonBody = new ObjectMapper().readTree(requestBody);
|
||||
JsonNode jsonBody = mapper.readTree(requestBody);
|
||||
entity = new HttpEntity<>(jsonBody, headers);
|
||||
|
||||
response = restTemplate.exchange(urlString, HttpMethod.resolve(requestType), entity, String.class);
|
||||
|
|
@ -325,7 +327,6 @@ public class RemoteFetcher {
|
|||
String camelCaseGetter = jsonDataPath.getParseField() != null && !jsonDataPath.getParseField().isEmpty() ? "get" + jsonDataPath.getParseField().substring(0, 1).toUpperCase() + jsonDataPath.getParseField().substring(1) : "";
|
||||
reader = aClass.getMethod(camelCaseGetter);
|
||||
}
|
||||
ObjectMapper objectMapper = new ObjectMapper();
|
||||
List<Map<String, String>> values = new ArrayList<>();
|
||||
int max = 1;
|
||||
if (reader != null) {
|
||||
|
|
@ -346,7 +347,7 @@ public class RemoteFetcher {
|
|||
} else {
|
||||
value = data;
|
||||
}
|
||||
Map<String, String> map = objectMapper.convertValue(value, Map.class);
|
||||
Map<String, String> map = mapper.convertValue(value, Map.class);
|
||||
if (jsonDataPath.getMergedFields() != null && !jsonDataPath.getMergedFields().isEmpty() && jsonDataPath.getMergedFieldName() != null && !jsonDataPath.getMergedFieldName().isEmpty()) {
|
||||
Map<String, String> finalMap = new HashMap<>();
|
||||
for (Map.Entry<String, String> entry : map.entrySet()) {
|
||||
|
|
@ -385,7 +386,6 @@ public class RemoteFetcher {
|
|||
List<Map<String, String>> internalResults;
|
||||
try {
|
||||
String filePath = Paths.get(path).toUri().toURL().toString();
|
||||
ObjectMapper mapper = new ObjectMapper();
|
||||
internalResults = mapper.readValue(new File(filePath), new TypeReference<List<Map<String, String>>>(){});
|
||||
return searchListMap(internalResults, query);
|
||||
} catch (Exception e) {
|
||||
|
|
|
|||
|
|
@ -1,8 +1,8 @@
|
|||
package eu.eudat.logic.proxy.fetching.entities;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlElementWrapper;
|
||||
import javax.xml.bind.annotation.XmlRootElement;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElementWrapper;
|
||||
import jakarta.xml.bind.annotation.XmlRootElement;
|
||||
import java.util.List;
|
||||
|
||||
@XmlRootElement(name = "fetchConfig")
|
||||
|
|
|
|||
|
|
@ -1,7 +1,7 @@
|
|||
package eu.eudat.logic.proxy.fetching.entities;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlRootElement;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlRootElement;
|
||||
|
||||
@XmlRootElement(name = "config")
|
||||
public class ConfigSingle {
|
||||
|
|
|
|||
|
|
@ -1,8 +1,8 @@
|
|||
package eu.eudat.logic.proxy.fetching.entities;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlElementWrapper;
|
||||
import javax.xml.bind.annotation.XmlRootElement;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlElementWrapper;
|
||||
import jakarta.xml.bind.annotation.XmlRootElement;
|
||||
import java.util.List;
|
||||
|
||||
@XmlRootElement(name = "ISO_4217")
|
||||
|
|
|
|||
|
|
@ -1,7 +1,7 @@
|
|||
package eu.eudat.logic.proxy.fetching.entities;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlRootElement;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlRootElement;
|
||||
|
||||
@XmlRootElement(name = "CcyNtry")
|
||||
public class CurrencySingleModel {
|
||||
|
|
|
|||
|
|
@ -1,7 +1,7 @@
|
|||
package eu.eudat.logic.security.customproviders.B2Access;
|
||||
|
||||
import com.google.api.client.repackaged.org.apache.commons.codec.binary.Base64;
|
||||
import eu.eudat.logic.security.validators.b2access.helpers.B2AccessResponseToken;
|
||||
import org.apache.commons.codec.binary.Base64;
|
||||
import org.springframework.beans.factory.annotation.Autowired;
|
||||
import org.springframework.core.env.Environment;
|
||||
import org.springframework.http.HttpEntity;
|
||||
|
|
|
|||
|
|
@ -1,8 +1,11 @@
|
|||
package eu.eudat.logic.security.customproviders.ConfigurableProvider.entities;
|
||||
|
||||
import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
|
||||
|
||||
import java.util.ArrayList;
|
||||
import java.util.List;
|
||||
|
||||
@JsonIgnoreProperties(ignoreUnknown = true)
|
||||
public class ConfigurableProviders {
|
||||
private List<ConfigurableProvider> providers = new ArrayList<>();
|
||||
|
||||
|
|
|
|||
|
|
@ -5,7 +5,7 @@ import com.google.api.client.googleapis.auth.oauth2.GoogleIdToken.Payload;
|
|||
import com.google.api.client.googleapis.auth.oauth2.GoogleIdTokenVerifier;
|
||||
import com.google.api.client.http.HttpTransport;
|
||||
import com.google.api.client.http.javanet.NetHttpTransport;
|
||||
import com.google.api.client.json.jackson2.JacksonFactory;
|
||||
import com.google.api.client.json.gson.GsonFactory;
|
||||
import eu.eudat.logic.security.validators.TokenValidator;
|
||||
import eu.eudat.logic.security.validators.TokenValidatorFactoryImpl;
|
||||
import eu.eudat.logic.services.operations.authentication.AuthenticationService;
|
||||
|
|
@ -29,7 +29,7 @@ public class GoogleTokenValidator implements TokenValidator {
|
|||
@Autowired
|
||||
public GoogleTokenValidator(Environment environment, AuthenticationService nonVerifiedUserAuthenticationService) {
|
||||
this.nonVerifiedUserAuthenticationService = nonVerifiedUserAuthenticationService;
|
||||
verifier = new GoogleIdTokenVerifier.Builder(transport, JacksonFactory.getDefaultInstance())
|
||||
verifier = new GoogleIdTokenVerifier.Builder(transport, new GsonFactory())
|
||||
.setAudience(Collections.singletonList(environment.getProperty("google.login.clientId")))
|
||||
.build();
|
||||
}
|
||||
|
|
|
|||
|
|
@ -1,5 +1,6 @@
|
|||
package eu.eudat.logic.services;
|
||||
|
||||
import com.fasterxml.jackson.databind.ObjectMapper;
|
||||
import eu.eudat.logic.services.helpers.HelpersService;
|
||||
import eu.eudat.logic.services.operations.OperationsContext;
|
||||
import eu.eudat.logic.services.utilities.UtilitiesService;
|
||||
|
|
@ -11,4 +12,6 @@ public interface ApiContext {
|
|||
OperationsContext getOperationsContext();
|
||||
|
||||
UtilitiesService getUtilitiesService();
|
||||
|
||||
ObjectMapper getObjectMapper();
|
||||
}
|
||||
|
|
|
|||
|
|
@ -1,5 +1,6 @@
|
|||
package eu.eudat.logic.services;
|
||||
|
||||
import com.fasterxml.jackson.databind.ObjectMapper;
|
||||
import eu.eudat.logic.services.helpers.HelpersService;
|
||||
import eu.eudat.logic.services.operations.OperationsContext;
|
||||
import eu.eudat.logic.services.utilities.UtilitiesService;
|
||||
|
|
@ -9,6 +10,7 @@ import org.springframework.stereotype.Service;
|
|||
|
||||
@Service("apiContext")
|
||||
public class ApiContextImpl implements ApiContext {
|
||||
private static final ObjectMapper mapper = new ObjectMapper();
|
||||
|
||||
private OperationsContext operationsContext;
|
||||
private HelpersService helpersService;
|
||||
|
|
@ -35,4 +37,9 @@ public class ApiContextImpl implements ApiContext {
|
|||
public UtilitiesService getUtilitiesService() {
|
||||
return utilitiesService;
|
||||
}
|
||||
|
||||
@Override
|
||||
public ObjectMapper getObjectMapper() {
|
||||
return mapper;
|
||||
}
|
||||
}
|
||||
|
|
|
|||
|
|
@ -1,5 +1,6 @@
|
|||
package eu.eudat.logic.services.operations.authentication;
|
||||
|
||||
import com.fasterxml.jackson.core.JsonProcessingException;
|
||||
import eu.eudat.data.entities.Credential;
|
||||
import eu.eudat.data.entities.UserInfo;
|
||||
import eu.eudat.data.entities.UserRole;
|
||||
|
|
@ -14,7 +15,6 @@ import eu.eudat.models.data.login.Credentials;
|
|||
import eu.eudat.models.data.loginprovider.LoginProviderUser;
|
||||
import eu.eudat.models.data.security.Principal;
|
||||
import eu.eudat.types.Authorities;
|
||||
import org.json.JSONObject;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
import org.springframework.core.env.Environment;
|
||||
|
|
@ -164,8 +164,10 @@ public abstract class AbstractAuthenticationService implements AuthenticationSer
|
|||
apiContext.getOperationsContext().getDatabaseRepository().getUserRoleDao().createOrUpdate(role);
|
||||
|
||||
} else {
|
||||
Map<String, Object> additionalInfo = userInfo.getAdditionalinfo() != null ?
|
||||
new JSONObject(userInfo.getAdditionalinfo()).toMap() : new HashMap<>();
|
||||
Map<String, Object> additionalInfo = null;
|
||||
try {
|
||||
additionalInfo = userInfo.getAdditionalinfo() != null ?
|
||||
apiContext.getObjectMapper().readValue(userInfo.getAdditionalinfo(), HashMap.class) : new HashMap<>();
|
||||
if (profile.getAvatarUrl() != null && !profile.getAvatarUrl().isEmpty() && !profile.getAvatarUrl().equals("null")) {
|
||||
additionalInfo.put("avatarUrl", profile.getAvatarUrl());
|
||||
}
|
||||
|
|
@ -182,7 +184,11 @@ public abstract class AbstractAuthenticationService implements AuthenticationSer
|
|||
additionalInfo.put("zenodoEmail", profile.getEmail());
|
||||
}
|
||||
userInfo.setLastloggedin(new Date());
|
||||
userInfo.setAdditionalinfo(new JSONObject(additionalInfo).toString());
|
||||
userInfo.setAdditionalinfo(apiContext.getObjectMapper().writeValueAsString(additionalInfo));
|
||||
} catch (JsonProcessingException e) {
|
||||
logger.error(e.getLocalizedMessage(), e);
|
||||
}
|
||||
|
||||
Set<Credential> credentials = userInfo.getCredentials();
|
||||
if (credentials.contains(credential)) {
|
||||
Credential oldCredential = credentials.stream().filter(item -> credential.getProvider().equals(item.getProvider())).findFirst().get();
|
||||
|
|
|
|||
|
|
@ -30,49 +30,49 @@ public class NonVerifiedUserEmailAuthenticationService extends AbstractAuthentic
|
|||
if (user == null) return null;
|
||||
String avatarUrl;
|
||||
try {
|
||||
avatarUrl = user.getAdditionalinfo() != null ? new ObjectMapper().readTree(user.getAdditionalinfo()).get("avatarUrl").asText() : "";
|
||||
avatarUrl = user.getAdditionalinfo() != null ? apiContext.getObjectMapper().readTree(user.getAdditionalinfo()).get("avatarUrl").asText() : "";
|
||||
} catch (Exception e) {
|
||||
avatarUrl = "";
|
||||
}
|
||||
String zenodoToken;
|
||||
try {
|
||||
zenodoToken = user.getAdditionalinfo() != null ? new ObjectMapper().readTree(user.getAdditionalinfo()).get("zenodoToken").asText() : "";
|
||||
zenodoToken = user.getAdditionalinfo() != null ? apiContext.getObjectMapper().readTree(user.getAdditionalinfo()).get("zenodoToken").asText() : "";
|
||||
} catch (Exception e) {
|
||||
zenodoToken = "";
|
||||
}
|
||||
Instant zenodoDuration;
|
||||
try {
|
||||
zenodoDuration = user.getAdditionalinfo() != null ? Instant.ofEpochMilli(new ObjectMapper().readTree(user.getAdditionalinfo()).get("expirationDate").asLong()) : Instant.now();
|
||||
zenodoDuration = user.getAdditionalinfo() != null ? Instant.ofEpochMilli(apiContext.getObjectMapper().readTree(user.getAdditionalinfo()).get("expirationDate").asLong()) : Instant.now();
|
||||
} catch (Exception e) {
|
||||
zenodoDuration = Instant.now();
|
||||
}
|
||||
String zenodoEmail;
|
||||
try {
|
||||
zenodoEmail = user.getAdditionalinfo() != null ? new ObjectMapper().readTree(user.getAdditionalinfo()).get("zenodoEmail").asText() : "";
|
||||
zenodoEmail = user.getAdditionalinfo() != null ? apiContext.getObjectMapper().readTree(user.getAdditionalinfo()).get("zenodoEmail").asText() : "";
|
||||
} catch (Exception e) {
|
||||
zenodoEmail = "";
|
||||
}
|
||||
String zenodoRefresh;
|
||||
try {
|
||||
zenodoRefresh = user.getAdditionalinfo() != null ? new ObjectMapper().readTree(user.getAdditionalinfo()).get("zenodoRefresh").asText() : "";
|
||||
zenodoRefresh = user.getAdditionalinfo() != null ? apiContext.getObjectMapper().readTree(user.getAdditionalinfo()).get("zenodoRefresh").asText() : "";
|
||||
} catch (Exception e) {
|
||||
zenodoRefresh = "";
|
||||
}
|
||||
String culture;
|
||||
try {
|
||||
culture = user.getAdditionalinfo() != null ? new ObjectMapper().readTree(user.getAdditionalinfo()).get("culture").get("name").asText() : "";
|
||||
culture = user.getAdditionalinfo() != null ? apiContext.getObjectMapper().readTree(user.getAdditionalinfo()).get("culture").get("name").asText() : "";
|
||||
} catch (Exception e) {
|
||||
culture = "";
|
||||
}
|
||||
String language;
|
||||
try {
|
||||
language = user.getAdditionalinfo() != null ? new ObjectMapper().readTree(user.getAdditionalinfo()).get("language").get("value").asText() : "";
|
||||
language = user.getAdditionalinfo() != null ? apiContext.getObjectMapper().readTree(user.getAdditionalinfo()).get("language").get("value").asText() : "";
|
||||
} catch (Exception e) {
|
||||
language = "";
|
||||
}
|
||||
String timezone;
|
||||
try {
|
||||
timezone = user.getAdditionalinfo() != null ? new ObjectMapper().readTree(user.getAdditionalinfo()).get("timezone").asText() : "";
|
||||
timezone = user.getAdditionalinfo() != null ? apiContext.getObjectMapper().readTree(user.getAdditionalinfo()).get("timezone").asText() : "";
|
||||
} catch (Exception e) {
|
||||
timezone = "";
|
||||
}
|
||||
|
|
|
|||
|
|
@ -1,27 +1,21 @@
|
|||
package eu.eudat.logic.services.operations.authentication;
|
||||
|
||||
import com.fasterxml.jackson.databind.ObjectMapper;
|
||||
import eu.eudat.data.entities.Credential;
|
||||
import eu.eudat.data.entities.UserInfo;
|
||||
import eu.eudat.data.entities.UserRole;
|
||||
import eu.eudat.data.entities.UserToken;
|
||||
import eu.eudat.exceptions.security.NullEmailException;
|
||||
import eu.eudat.logic.builders.entity.CredentialBuilder;
|
||||
import eu.eudat.logic.builders.entity.UserInfoBuilder;
|
||||
import eu.eudat.logic.builders.entity.UserTokenBuilder;
|
||||
import eu.eudat.logic.builders.model.models.PrincipalBuilder;
|
||||
import eu.eudat.logic.security.validators.TokenValidatorFactoryImpl;
|
||||
import eu.eudat.logic.services.ApiContext;
|
||||
import eu.eudat.models.data.login.Credentials;
|
||||
import eu.eudat.models.data.loginprovider.LoginProviderUser;
|
||||
import eu.eudat.models.data.security.Principal;
|
||||
import eu.eudat.types.Authorities;
|
||||
import org.json.JSONObject;
|
||||
import org.springframework.core.env.Environment;
|
||||
import org.springframework.stereotype.Service;
|
||||
|
||||
import java.time.Instant;
|
||||
import java.util.*;
|
||||
import java.util.Date;
|
||||
import java.util.HashSet;
|
||||
import java.util.List;
|
||||
|
||||
|
||||
@Service("verifiedUserAuthenticationService")
|
||||
|
|
@ -39,49 +33,49 @@ public class VerifiedUserAuthenticationService extends AbstractAuthenticationSer
|
|||
if (user.getEmail() == null) throw new NullEmailException();
|
||||
String avatarUrl;
|
||||
try {
|
||||
avatarUrl = user.getAdditionalinfo() != null ? new ObjectMapper().readTree(user.getAdditionalinfo()).get("avatarUrl").asText() : "";
|
||||
avatarUrl = user.getAdditionalinfo() != null ? apiContext.getObjectMapper().readTree(user.getAdditionalinfo()).get("avatarUrl").asText() : "";
|
||||
} catch (Exception e) {
|
||||
avatarUrl = "";
|
||||
}
|
||||
String zenodoToken;
|
||||
try {
|
||||
zenodoToken = user.getAdditionalinfo() != null ? new ObjectMapper().readTree(user.getAdditionalinfo()).get("zenodoToken").asText() : "";
|
||||
zenodoToken = user.getAdditionalinfo() != null ? apiContext.getObjectMapper().readTree(user.getAdditionalinfo()).get("zenodoToken").asText() : "";
|
||||
} catch (Exception e) {
|
||||
zenodoToken = "";
|
||||
}
|
||||
Instant zenodoDuration;
|
||||
try {
|
||||
zenodoDuration = user.getAdditionalinfo() != null ? Instant.ofEpochMilli(new ObjectMapper().readTree(user.getAdditionalinfo()).get("expirationDate").asLong()) : Instant.now();
|
||||
zenodoDuration = user.getAdditionalinfo() != null ? Instant.ofEpochMilli(apiContext.getObjectMapper().readTree(user.getAdditionalinfo()).get("expirationDate").asLong()) : Instant.now();
|
||||
} catch (Exception e) {
|
||||
zenodoDuration = Instant.now();
|
||||
}
|
||||
String zenodoEmail;
|
||||
try {
|
||||
zenodoEmail = user.getAdditionalinfo() != null ? new ObjectMapper().readTree(user.getAdditionalinfo()).get("zenodoEmail").asText() : "";
|
||||
zenodoEmail = user.getAdditionalinfo() != null ? apiContext.getObjectMapper().readTree(user.getAdditionalinfo()).get("zenodoEmail").asText() : "";
|
||||
} catch (Exception e) {
|
||||
zenodoEmail = "";
|
||||
}
|
||||
String zenodoRefresh;
|
||||
try {
|
||||
zenodoRefresh = user.getAdditionalinfo() != null ? new ObjectMapper().readTree(user.getAdditionalinfo()).get("zenodoRefresh").asText() : "";
|
||||
zenodoRefresh = user.getAdditionalinfo() != null ? apiContext.getObjectMapper().readTree(user.getAdditionalinfo()).get("zenodoRefresh").asText() : "";
|
||||
} catch (Exception e) {
|
||||
zenodoRefresh = "";
|
||||
}
|
||||
String culture;
|
||||
try {
|
||||
culture = user.getAdditionalinfo() != null ? new ObjectMapper().readTree(user.getAdditionalinfo()).get("culture").get("name").asText() : "";
|
||||
culture = user.getAdditionalinfo() != null ? apiContext.getObjectMapper().readTree(user.getAdditionalinfo()).get("culture").get("name").asText() : "";
|
||||
} catch (Exception e) {
|
||||
culture = "";
|
||||
}
|
||||
String language;
|
||||
try {
|
||||
language = user.getAdditionalinfo() != null ? new ObjectMapper().readTree(user.getAdditionalinfo()).get("language").get("value").asText() : "";
|
||||
language = user.getAdditionalinfo() != null ? apiContext.getObjectMapper().readTree(user.getAdditionalinfo()).get("language").get("value").asText() : "";
|
||||
} catch (Exception e) {
|
||||
language = "";
|
||||
}
|
||||
String timezone;
|
||||
try {
|
||||
timezone = user.getAdditionalinfo() != null ? new ObjectMapper().readTree(user.getAdditionalinfo()).get("timezone").asText() : "";
|
||||
timezone = user.getAdditionalinfo() != null ? apiContext.getObjectMapper().readTree(user.getAdditionalinfo()).get("timezone").asText() : "";
|
||||
} catch (Exception e) {
|
||||
timezone = "";
|
||||
}
|
||||
|
|
|
|||
|
|
@ -8,6 +8,7 @@ import eu.eudat.models.data.mail.SimpleMail;
|
|||
import eu.eudat.models.data.security.Principal;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
import org.springframework.beans.factory.annotation.Autowired;
|
||||
import org.springframework.core.env.Environment;
|
||||
import org.springframework.stereotype.Service;
|
||||
|
||||
|
|
@ -20,11 +21,11 @@ import java.util.concurrent.CompletableFuture;
|
|||
@Service("ConfirmationEmailService")
|
||||
public class ConfirmationEmailServiceImpl implements ConfirmationEmailService {
|
||||
private static final Logger logger = LoggerFactory.getLogger(ConfirmationEmailServiceImpl.class);
|
||||
//private Logger logger;
|
||||
private Environment environment;
|
||||
private static final ObjectMapper mapper = new ObjectMapper();
|
||||
private final Environment environment;
|
||||
|
||||
public ConfirmationEmailServiceImpl(/*Logger logger,*/ Environment environment) {
|
||||
// this.logger = logger;
|
||||
@Autowired
|
||||
public ConfirmationEmailServiceImpl(Environment environment) {
|
||||
this.environment = environment;
|
||||
}
|
||||
|
||||
|
|
@ -118,7 +119,7 @@ public class ConfirmationEmailServiceImpl implements ConfirmationEmailService {
|
|||
Map<String, Object> map = new HashMap<>();
|
||||
map.put("userId", principal.getId());
|
||||
map.put("provider", provider.toString());
|
||||
confirmationEmail.setData(new ObjectMapper().writeValueAsString(map));
|
||||
confirmationEmail.setData(mapper.writeValueAsString(map));
|
||||
} catch (JsonProcessingException e) {
|
||||
logger.error(e.getMessage(), e);
|
||||
}
|
||||
|
|
|
|||
|
|
@ -15,8 +15,8 @@ import org.springframework.core.env.Environment;
|
|||
import org.springframework.stereotype.Service;
|
||||
|
||||
import javax.mail.MessagingException;
|
||||
import javax.xml.bind.JAXBContext;
|
||||
import javax.xml.bind.Marshaller;
|
||||
import jakarta.xml.bind.JAXBContext;
|
||||
import jakarta.xml.bind.Marshaller;
|
||||
import java.io.StringWriter;
|
||||
import java.util.List;
|
||||
import java.util.UUID;
|
||||
|
|
|
|||
|
|
@ -212,7 +212,6 @@ public class HtmlToWorldBuilder implements NodeVisitor {
|
|||
f.setAscii("Symbol");
|
||||
f.setHAnsi("Symbol");
|
||||
f.setCs("Symbol");
|
||||
f.setHint(STHint.DEFAULT);
|
||||
} else {
|
||||
ctLvl.addNewLvlText().setVal("%1.");
|
||||
}
|
||||
|
|
|
|||
|
|
@ -1,7 +1,6 @@
|
|||
package eu.eudat.logic.utilities.documents.xml;
|
||||
|
||||
import com.fasterxml.jackson.databind.ObjectMapper;
|
||||
import com.fasterxml.jackson.databind.exc.MismatchedInputException;
|
||||
import eu.eudat.logic.services.forms.VisibilityRuleService;
|
||||
import eu.eudat.logic.utilities.builders.XmlBuilder;
|
||||
import eu.eudat.models.data.components.commons.datafield.ExternalDatasetsData;
|
||||
|
|
@ -10,8 +9,6 @@ import eu.eudat.models.data.user.components.datasetprofile.FieldSet;
|
|||
import eu.eudat.models.data.user.components.datasetprofile.Section;
|
||||
import eu.eudat.models.data.user.composite.DatasetProfilePage;
|
||||
import eu.eudat.models.data.user.composite.PagedDatasetProfile;
|
||||
import org.json.JSONArray;
|
||||
import org.json.JSONException;
|
||||
import org.springframework.core.env.Environment;
|
||||
import org.w3c.dom.Document;
|
||||
import org.w3c.dom.Element;
|
||||
|
|
|
|||
|
|
@ -3,9 +3,9 @@ import eu.eudat.logic.utilities.documents.xml.datasetProfileXml.datasetProfileMo
|
|||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
|
||||
import javax.xml.bind.JAXBContext;
|
||||
import javax.xml.bind.JAXBException;
|
||||
import javax.xml.bind.Unmarshaller;
|
||||
import jakarta.xml.bind.JAXBContext;
|
||||
import jakarta.xml.bind.JAXBException;
|
||||
import jakarta.xml.bind.Unmarshaller;
|
||||
import java.io.*;
|
||||
|
||||
public class ImportXmlBuilderDatasetProfile {
|
||||
|
|
|
|||
|
|
@ -1,9 +1,9 @@
|
|||
package eu.eudat.logic.utilities.documents.xml.datasetProfileXml.datasetProfileModel;
|
||||
|
||||
|
||||
import javax.xml.bind.annotation.XmlAttribute;
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlRootElement;
|
||||
import jakarta.xml.bind.annotation.XmlAttribute;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlRootElement;
|
||||
import java.util.LinkedList;
|
||||
import java.util.List;
|
||||
|
||||
|
|
|
|||
|
|
@ -2,9 +2,9 @@ package eu.eudat.logic.utilities.documents.xml.datasetProfileXml.datasetProfileM
|
|||
|
||||
import eu.eudat.logic.utilities.documents.xml.datasetProfileXml.datasetProfileModel.Fields.Fields;
|
||||
|
||||
import javax.xml.bind.annotation.XmlAttribute;
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlRootElement;
|
||||
import jakarta.xml.bind.annotation.XmlAttribute;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlRootElement;
|
||||
|
||||
@XmlRootElement(name = "field-Set")
|
||||
public class FieldSet {
|
||||
|
|
|
|||
|
|
@ -1,7 +1,7 @@
|
|||
package eu.eudat.logic.utilities.documents.xml.datasetProfileXml.datasetProfileModel;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlRootElement;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlRootElement;
|
||||
import java.util.LinkedList;
|
||||
import java.util.List;
|
||||
|
||||
|
|
|
|||
|
|
@ -1,7 +1,7 @@
|
|||
package eu.eudat.logic.utilities.documents.xml.datasetProfileXml.datasetProfileModel.Fields;
|
||||
|
||||
import javax.xml.bind.annotation.XmlAttribute;
|
||||
import javax.xml.bind.annotation.XmlRootElement;
|
||||
import jakarta.xml.bind.annotation.XmlAttribute;
|
||||
import jakarta.xml.bind.annotation.XmlRootElement;
|
||||
|
||||
@XmlRootElement(name = "defaultValue")
|
||||
public class DefaultValue {
|
||||
|
|
|
|||
|
|
@ -4,9 +4,9 @@ import eu.eudat.logic.utilities.builders.ModelBuilder;
|
|||
import eu.eudat.models.data.components.commons.datafield.FieldData;
|
||||
import org.w3c.dom.Element;
|
||||
|
||||
import javax.xml.bind.annotation.XmlAttribute;
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlRootElement;
|
||||
import jakarta.xml.bind.annotation.XmlAttribute;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlRootElement;
|
||||
import java.util.LinkedList;
|
||||
import java.util.List;
|
||||
|
||||
|
|
|
|||
|
|
@ -1,7 +1,7 @@
|
|||
package eu.eudat.logic.utilities.documents.xml.datasetProfileXml.datasetProfileModel.Fields;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlRootElement;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlRootElement;
|
||||
import java.util.LinkedList;
|
||||
import java.util.List;
|
||||
|
||||
|
|
|
|||
|
|
@ -1,8 +1,8 @@
|
|||
package eu.eudat.logic.utilities.documents.xml.datasetProfileXml.datasetProfileModel.Fields;
|
||||
|
||||
import javax.xml.bind.annotation.XmlAttribute;
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlRootElement;
|
||||
import jakarta.xml.bind.annotation.XmlAttribute;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlRootElement;
|
||||
|
||||
@XmlRootElement(name = "rule")
|
||||
public class Rule{
|
||||
|
|
|
|||
|
|
@ -1,7 +1,7 @@
|
|||
package eu.eudat.logic.utilities.documents.xml.datasetProfileXml.datasetProfileModel.Fields;
|
||||
|
||||
import javax.xml.bind.annotation.XmlAttribute;
|
||||
import javax.xml.bind.annotation.XmlRootElement;
|
||||
import jakarta.xml.bind.annotation.XmlAttribute;
|
||||
import jakarta.xml.bind.annotation.XmlRootElement;
|
||||
|
||||
@XmlRootElement(name = "validation")
|
||||
public class Validation {
|
||||
|
|
|
|||
|
|
@ -1,8 +1,8 @@
|
|||
package eu.eudat.logic.utilities.documents.xml.datasetProfileXml.datasetProfileModel.Fields;
|
||||
|
||||
import javax.xml.bind.annotation.XmlAttribute;
|
||||
import javax.xml.bind.annotation.XmlRootElement;
|
||||
import javax.xml.bind.annotation.XmlValue;
|
||||
import jakarta.xml.bind.annotation.XmlAttribute;
|
||||
import jakarta.xml.bind.annotation.XmlRootElement;
|
||||
import jakarta.xml.bind.annotation.XmlValue;
|
||||
|
||||
@XmlRootElement(name = "value")
|
||||
public class Value {
|
||||
|
|
|
|||
|
|
@ -1,8 +1,8 @@
|
|||
package eu.eudat.logic.utilities.documents.xml.datasetProfileXml.datasetProfileModel.Fields;
|
||||
|
||||
|
||||
import javax.xml.bind.annotation.XmlAttribute;
|
||||
import javax.xml.bind.annotation.XmlRootElement;
|
||||
import jakarta.xml.bind.annotation.XmlAttribute;
|
||||
import jakarta.xml.bind.annotation.XmlRootElement;
|
||||
|
||||
@XmlRootElement(name = "viewStyle")
|
||||
public class ViewStyle {
|
||||
|
|
|
|||
|
|
@ -1,8 +1,8 @@
|
|||
package eu.eudat.logic.utilities.documents.xml.datasetProfileXml.datasetProfileModel.Fields;
|
||||
|
||||
import javax.xml.bind.annotation.XmlAttribute;
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlRootElement;
|
||||
import jakarta.xml.bind.annotation.XmlAttribute;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlRootElement;
|
||||
import java.util.LinkedList;
|
||||
import java.util.List;
|
||||
|
||||
|
|
|
|||
|
|
@ -1,7 +1,7 @@
|
|||
package eu.eudat.logic.utilities.documents.xml.datasetProfileXml.datasetProfileModel.Fields;
|
||||
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlRootElement;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlRootElement;
|
||||
|
||||
@XmlRootElement(name = "validations")
|
||||
public class validations {
|
||||
|
|
|
|||
|
|
@ -1,7 +1,7 @@
|
|||
package eu.eudat.logic.utilities.documents.xml.datasetProfileXml.datasetProfileModel;
|
||||
|
||||
import javax.xml.bind.annotation.XmlAttribute;
|
||||
import javax.xml.bind.annotation.XmlRootElement;
|
||||
import jakarta.xml.bind.annotation.XmlAttribute;
|
||||
import jakarta.xml.bind.annotation.XmlRootElement;
|
||||
|
||||
|
||||
@XmlRootElement(name = "multiplicity")
|
||||
|
|
|
|||
|
|
@ -1,8 +1,8 @@
|
|||
package eu.eudat.logic.utilities.documents.xml.datasetProfileXml.datasetProfileModel;
|
||||
|
||||
import javax.xml.bind.annotation.XmlAttribute;
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlRootElement;
|
||||
import jakarta.xml.bind.annotation.XmlAttribute;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlRootElement;
|
||||
import java.util.List;
|
||||
|
||||
@XmlRootElement(name = "page")
|
||||
|
|
|
|||
|
|
@ -1,8 +1,8 @@
|
|||
package eu.eudat.logic.utilities.documents.xml.datasetProfileXml.datasetProfileModel;
|
||||
|
||||
import javax.xml.bind.annotation.XmlAttribute;
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlRootElement;
|
||||
import jakarta.xml.bind.annotation.XmlAttribute;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlRootElement;
|
||||
import java.util.LinkedList;
|
||||
import java.util.List;
|
||||
|
||||
|
|
|
|||
|
|
@ -1,9 +1,9 @@
|
|||
package eu.eudat.logic.utilities.documents.xml.datasetProfileXml.datasetProfileModel;
|
||||
|
||||
|
||||
import javax.xml.bind.annotation.XmlAttribute;
|
||||
import javax.xml.bind.annotation.XmlElement;
|
||||
import javax.xml.bind.annotation.XmlRootElement;
|
||||
import jakarta.xml.bind.annotation.XmlAttribute;
|
||||
import jakarta.xml.bind.annotation.XmlElement;
|
||||
import jakarta.xml.bind.annotation.XmlRootElement;
|
||||
import java.util.LinkedList;
|
||||
import java.util.List;
|
||||
|
||||
|
|
|
|||
|
|
@ -4,9 +4,9 @@ import eu.eudat.logic.utilities.documents.xml.dmpXml.dmpProfileModel.DmpProfile;
|
|||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
|
||||
import javax.xml.bind.JAXBContext;
|
||||
import javax.xml.bind.JAXBException;
|
||||
import javax.xml.bind.Unmarshaller;
|
||||
import jakarta.xml.bind.JAXBContext;
|
||||
import jakarta.xml.bind.JAXBException;
|
||||
import jakarta.xml.bind.Unmarshaller;
|
||||
import java.io.File;
|
||||
import java.io.IOException;
|
||||
|
||||
|
|
|
|||
|
|
@ -1,7 +1,7 @@
|
|||
package eu.eudat.logic.utilities.documents.xml.dmpXml.dmpProfileModel;
|
||||
|
||||
import javax.xml.bind.annotation.XmlAttribute;
|
||||
import javax.xml.bind.annotation.XmlRootElement;
|
||||
import jakarta.xml.bind.annotation.XmlAttribute;
|
||||
import jakarta.xml.bind.annotation.XmlRootElement;
|
||||
|
||||
@XmlRootElement(name = "datatype")
|
||||
public class DMPProfileFieldDataType {
|
||||
|
|
|
|||
|
|
@ -1,8 +1,8 @@
|
|||
package eu.eudat.logic.utilities.documents.xml.dmpXml.dmpProfileModel;
|
||||
|
||||
|
||||
import javax.xml.bind.annotation.XmlAttribute;
|
||||
import javax.xml.bind.annotation.XmlRootElement;
|
||||
import jakarta.xml.bind.annotation.XmlAttribute;
|
||||
import jakarta.xml.bind.annotation.XmlRootElement;
|
||||
|
||||
@XmlRootElement(name = "type")
|
||||
public class DMPProfileType {
|
||||
|
|
|
|||
Some files were not shown because too many files have changed in this diff Show More
Loading…
Reference in New Issue