Commit Graph

410 Commits

Author SHA1 Message Date
Thomas Georgios Giannos f46543f1a4 Fix on role naming compatibility 2023-12-12 16:32:37 +02:00
Thomas Georgios Giannos b46c4e19e2 Extracting subject id from user credentials for role mapping on Keycloak Api 2023-12-12 16:17:08 +02:00
amentis f6100a8ea2 add inbox, outbox 2023-12-12 10:14:26 +02:00
Efstratios Giannopoulos aa8c73b6ed security changes 2023-12-11 15:00:21 +02:00
amentis 880e8c5aa8 refactor lock entity 2023-12-08 18:05:48 +02:00
Thomas Georgios Giannos 038c78fb04 Configuring groups for user roles 2023-12-08 13:27:04 +02:00
Thomas Georgios Giannos 08a5b49d1d Supporting client roles for users on Keycloak API service 2023-12-08 11:48:32 +02:00
Diamantis Tziotzios 56bd12a4e3 more ui changes 2023-12-06 23:10:01 +02:00
Efstratios Giannopoulos c1b197ea30 Dmp/Description changes 2023-12-06 18:33:01 +02:00
amentis bee0e9f152 fix update_notification script 2023-12-06 13:08:49 +02:00
Efstratios Giannopoulos c286838a30 add DashboardStatistics 2023-12-05 18:13:40 +02:00
Efstratios Giannopoulos 2dee73ce1f support iso dates 2023-12-05 12:52:59 +02:00
Efstratios Giannopoulos 1a76942b5f add Description PersistStatus 2023-12-04 18:38:23 +02:00
Efstratios Giannopoulos 2a766dc37f storage file fixes 2023-11-30 13:37:56 +02:00
Diamantis Tziotzios 40ae38e8d9 more ui changes 2023-11-30 10:12:41 +02:00
Thomas Georgios Giannos baaddb6284 Adding keycloak service and dependency 2023-11-29 16:12:56 +02:00
Efstratios Giannopoulos 75d31cf627 Merge branch 'dmp-refactoring' of code-repo.d4science.org:MaDgiK-CITE/argos into dmp-refactoring
# Conflicts:
#	dmp-backend/core/src/main/java/eu/eudat/audit/AuditableAction.java
2023-11-28 15:07:41 +02:00
Efstratios Giannopoulos c5461dbc62 add storage service 2023-11-28 15:05:58 +02:00
amentis 61218ed220 add Language entity and UI 2023-11-27 18:22:13 +02:00
amentis d554e87093 add tenant config 2023-11-24 15:12:02 +02:00
amentis 18452725bc add Tenant Entity 2023-11-22 18:01:58 +02:00
Efstratios Giannopoulos 91af36cdcd config updates 2023-11-21 13:16:33 +02:00
Efstratios Giannopoulos c0e57b363d elastic manage service 2023-11-21 13:15:31 +02:00
Efstratios Giannopoulos 6de7268465 user changes 2023-11-20 17:09:24 +02:00
Efstratios Giannopoulos a97976296b user refactor 2023-11-17 19:01:44 +02:00
Efstratios Giannopoulos 7c8b385146 add elastic dev config 2023-11-16 10:43:41 +02:00
Efstratios Giannopoulos 0e1408e532 add public description 2023-11-14 16:08:48 +02:00
Efstratios Giannopoulos f0264eefb9 elastic changes 2023-11-14 12:24:14 +02:00
Thomas Georgios Giannos 5edaf1c74e Adding dmp user association, adding finalization status check on persist workflow 2023-11-13 16:46:35 +02:00
Thomas Georgios Giannos 0c4cf467d8 Adding description cloning method on service, adding missing functionality on dmp new-version and cloning, dmp persist fix 2023-11-10 16:13:55 +02:00
Thomas Georgios Giannos 009dad8cba Adding clone dmp persist model, exposing new version and clone methods to the API 2023-11-09 14:10:32 +02:00
Efstratios Giannopoulos 41fc3407eb description refactor 2023-11-09 11:29:42 +02:00
Efstratios Giannopoulos 0bbad595f5 update logging, db configurations 2023-11-08 13:37:16 +02:00
Efstratios Giannopoulos 8cd8da6d98 add public models 2023-11-07 17:07:24 +02:00
Thomas Georgios Giannos 4a8c3640de Added dmp user censor 2023-11-07 14:44:26 +02:00
amentis 5001968da7 fix issue 2023-11-07 13:18:17 +02:00
amentis 88bf760165 create referenceType entity 2023-11-07 13:15:25 +02:00
Efstratios Giannopoulos 1469e22185 description refactor 2023-11-07 12:36:36 +02:00
Efstratios Giannopoulos 20873ca13e Merge branch 'dmp-refactoring' of code-repo.d4science.org:MaDgiK-CITE/argos into dmp-refactoring
# Conflicts:
#	dmp-backend/web/src/main/java/eu/eudat/controllers/Admin.java
2023-11-06 17:17:34 +02:00
Efstratios Giannopoulos 87e22040c5 description template migration 2023-11-06 17:16:55 +02:00
George Kalampokis c6cdcc4b15 Apply requested changes to RepositoryDepositService 2023-11-06 16:56:59 +02:00
amentis 11bb1a3c8c create Supportive Material query public 2023-11-06 15:25:04 +02:00
Thomas Georgios Giannos 9b9cf0de4d Adding dmp-description-template stack 2023-11-06 13:31:01 +02:00
George Kalampokis 7bb8e850e8 Add first implementation of the new Repository Deposit Service 2023-11-03 17:54:26 +02:00
Thomas Georgios Giannos 2f20675348 Adding reference persisting on dmp persist (work in progress), adding separate persist models for dmp properties 2023-11-03 16:02:47 +02:00
amentis c37530c022 add supportive material editor to UI 2023-11-03 13:30:11 +02:00
Efstratios Giannopoulos b6278ab1ef DescriptionTemplate refactor 2023-11-03 11:55:26 +02:00
Thomas Georgios Giannos e02237e599 Adding new version service method for Dmps 2023-11-02 18:12:36 +02:00
Efstratios Giannopoulos ac15e33a87 DescriptionTemplate refactor 2023-11-01 18:12:59 +02:00
Efstratios Giannopoulos 4e08d9f073 DescriptionTemplate refactor 2023-11-01 12:03:23 +02:00
amentis be9761b103 add more fields to reference-type.yml 2023-10-31 17:57:41 +02:00
amentis 477e4e498e add frontend reference search lookup 2023-10-30 17:53:30 +02:00
amentis f744573f02 add reference search builders, lookup 2023-10-30 17:15:40 +02:00
Efstratios Giannopoulos c06253bb20 DescriptionTemplate refactor 2023-10-30 15:07:59 +02:00
Efstratios Giannopoulos bdcaee004d Merge branch 'dmp-refactoring' of code-repo.d4science.org:MaDgiK-CITE/argos into dmp-refactoring
# Conflicts:
#	dmp-backend/core/src/main/java/eu/eudat/audit/AuditableAction.java
#	dmp-backend/web/src/main/resources/config/permissions.yml
2023-10-27 18:52:34 +03:00
Efstratios Giannopoulos 57facf98e5 DescriptionTemplate refactor 2023-10-27 18:46:34 +03:00
amentis 92c165e904 add references definition xml,builder, persist 2023-10-27 17:35:35 +03:00
Thomas Georgios Giannos 60ca51fe00 Adding DescriptionReference entity stack (former Dataset*** entities) 2023-10-27 11:59:37 +03:00
George Kalampokis d983e1e38e Add Deposit Security 2023-10-26 18:04:55 +03:00
amentis aecac1995d rename External Reference to Reference 2023-10-26 14:38:18 +03:00
Diamantis Tziotzios 4eca9b32c9 various backend fixes 2023-10-26 11:21:33 +03:00
Thomas Georgios Giannos 9a78d98751 Updating permissions.yml for dmps, entity_dois and descriptions 2023-10-25 16:55:10 +03:00
amentis bf8edfad92 add ExternalReference, DmpExternalReference entities 2023-10-24 18:47:13 +03:00
Efstratios Giannopoulos de566729f1 DmpBlueprint refactor 2023-10-24 18:00:11 +03:00
Efstratios Giannopoulos fe7d6f59b1 DmpBlueprint refacto 2023-10-23 15:58:33 +03:00
Efstratios Giannopoulos 6cde8ae2a9 add cross origin config 2023-10-23 11:15:08 +03:00
Efstratios Giannopoulos 88088d64fd DmpBlueprint refactor 2023-10-20 19:13:57 +03:00
Efstratios Giannopoulos ce8ff28955 Merge branch 'dmp-refactoring' of code-repo.d4science.org:MaDgiK-CITE/argos into dmp-refactoring
# Conflicts:
#	dmp-backend/data/src/main/java/eu/eudat/data/dao/entities/EntityDoiDao.java
#	dmp-backend/data/src/main/java/eu/eudat/data/dao/entities/EntityDoiDaoImpl.java
#	dmp-backend/web/src/main/java/eu/eudat/logic/managers/DataManagementPlanManager.java
#	dmp-backend/web/src/main/java/eu/eudat/logic/managers/DepositManager.java
2023-10-18 19:03:35 +03:00
Efstratios Giannopoulos 52e59ac11c task #9088 Authorization model should be changed to be Permission based 2023-10-18 18:52:03 +03:00
George Kalampokis dc752f73ca Partially fix Deposit Logic and add support for upcomming micro-services 2023-10-18 18:15:52 +03:00
amentis ad91234fd9 Merge remote-tracking branch 'origin/dmp-refactoring' into dmp-refactoring 2023-10-18 12:28:13 +03:00
amentis 17bb6bd4b0 add Supportive Material 2023-10-18 12:26:57 +03:00
Efstratios Giannopoulos 27bcc31e54 task #9088 Authorization model should be changed to be Permission based 2023-10-18 12:10:24 +03:00
amentis 3dee4857f8 Merge branch 'dmp-refactoring' of https://code-repo.d4science.org/MaDgiK-CITE/argos into dmp-refactoring
 Conflicts:
	dmp-frontend/src/assets/config/config.json
2023-10-18 10:33:59 +03:00
amentis f67ada842e commit 2023-10-18 10:31:57 +03:00
Efstratios Giannopoulos b3a73a50aa task #9088 Authorization model should be changed to be Permission based 2023-10-17 17:13:34 +03:00
Efstratios Giannopoulos 7ed111e936 task #9088 Authorization model should be changed to be Permission based 2023-10-17 15:22:05 +03:00
Efstratios Giannopoulos bd2807fbdf remove zenodo from user info 2023-10-17 12:40:47 +03:00
George Kalampokis a9a3273f62 Fix compilation errors and fix swagger ui description formatting 2023-10-13 09:50:22 +03:00
Efstratios Giannopoulos 5009d658ed task #9045 Refactor authentication mechanism to support using Keycloak 2023-10-12 16:16:19 +03:00
Efstratios Giannopoulos 055d29b95f Merge branch 'dmp-refactoring' of code-repo.d4science.org:MaDgiK-CITE/argos into dmp-refactoring
# Conflicts:
#	dmp-backend/web/pom.xml
#	dmp-backend/web/src/main/resources/config/application.yml
2023-10-12 12:04:26 +03:00
George Kalampokis b845450ebd Update Swagger ui 2023-10-12 10:55:48 +03:00
Efstratios Giannopoulos 968f45d5b3 authn refactor 2023-10-11 17:53:12 +03:00
Efstratios Giannopoulos 8b05ee1d0f add cache yml 2023-10-11 10:09:46 +03:00
George Kalampokis de2f5e67fd Fix profile issue 2023-10-11 09:53:24 +03:00
George Kalampokis 755c79b7af Separate configuration to different files 2023-10-10 16:49:48 +03:00
George Kalampokis 166bea73bf Replace the old .properties configuration files with the .yml 2023-10-09 16:02:14 +03:00
George Kalampokis cab2f1bc64 Add Environment variables 2023-10-09 10:38:46 +03:00
Thomas Georgios Giannos c7778e80b9 Adding missing auditing configuration property 2023-10-06 15:22:38 +03:00
Diamantis Tziotzios cf6e041154 Merge remote-tracking branch 'origin/refactorArgosModel' into Development
# Conflicts:
#	dmp-backend/web/src/main/java/eu/eudat/models/rda/mapper/DatasetRDAMapper.java
#	dmp-frontend/src/app/ui/dashboard/drafts/drafts.component.html
2023-09-13 10:01:57 +03:00
Bernaldo Mihasi bbe4975176 add hasTemplates property to sections, it indicates if descriptions templates can be added in a section 2023-09-11 08:59:47 +03:00
Bernaldo Mihasi 78946de1b5 change images source in emails to base64
(cherry picked from commit b94aa51489)
2023-08-03 13:26:27 +03:00
Bernaldo Mihasi b94aa51489 change images source in emails to base64 2023-08-03 11:19:33 +03:00
Bernaldo Mihasi 3fc307c831 #8912: adding new metadata/registries api in the configs 2023-07-21 17:04:41 +03:00
Bernaldo Mihasi dd6a2a0df7 adding key property in the prefilling model as the identifier of the prefilling repository 2023-07-17 10:29:06 +03:00
Bernaldo Mihasi a8ce14af70 #8726 - adding openaire prefilling 2023-07-14 13:47:01 +03:00
Bernaldo Mihasi cb972c394c change maDmpTarget type in prefilling to semanticTarget 2023-06-22 13:47:01 +03:00
Bernaldo Mihasi d996acdcc4 #8842 - add notification templates html files to application properties 2023-06-21 13:09:20 +03:00
Bernaldo Mihasi dfa2f0cd38 #8737 - make elastic fetch 100 inner hits instead of the default 3. 2023-06-21 12:05:51 +03:00
Bernaldo Mihasi 3d367b0589 #8765 - make pids coming from apis as hypelinks in export 2023-06-21 12:00:20 +03:00
Bernaldo Mihasi 4c9652abc3 saml2 metadata creation for sp 2023-06-12 15:05:51 +03:00
Bernaldo Mihasi b2f2a79a5d add unlink functionality in profile section, when an email is unlinked that account is starting from scratch resulting in an empty dashboard. 2023-05-23 17:15:11 +03:00
Bernaldo Mihasi 5e764559cf fix typo (semantics) 2023-05-19 12:34:08 +03:00
Bernaldo Mihasi 758539eaa0 add zenodo related identifiers for schematics 2023-05-17 13:51:21 +03:00
Bernaldo Mihasi af8fddb89c #7911 - read pid and pid type from external api respones so as to save those values in the dataset field 2023-05-17 13:45:12 +03:00
Bernaldo Mihasi 8c30c558b2 User Guide, ToS, FAQ, Glossary, About html pages can now be dynamically updated so that they can be changed per installation. 2023-04-26 17:25:59 +03:00
Diamantis Tziotzios 89922eaecc Merge remote-tracking branch 'origin/semantics' into Development 2023-04-18 11:19:48 +03:00
Bernaldo Mihasi 8293535bb0 add zenodo properties in schematics 2023-04-18 09:41:01 +03:00
Konstantina Galouni c9b4b35e39 h2020.docx: [Bug fix] Updated image of Argos in h2020.docx DMP template | DataManagementPlanManager.java & DatasetManager.java: Added parameter "isDataset" in fillFirstPage() | WordBuilder.java: [Bug fix] Added parameter isDataset in fillFirstPage() and added some checks in description. 2023-04-05 11:13:26 +03:00
Bernaldo Mihasi c35bc2efed remove rda property from models 2023-03-27 14:52:37 +03:00
Konstantina Galouni 28c1c9b71d h2020.docx & WordBuilder.java: Updated h2020.docx DMP template and added export of DMP description. 2023-02-28 11:01:44 +02:00
Bernaldo Mihasi e2505039df cleanup unused code 2023-02-21 14:09:33 +02:00
Bernaldo Mihasi 9a8fc5e92e schematics implementation, xml import export of dataset profiles 2023-02-21 11:46:44 +02:00
George Kalampokis 0888b7cd74 Enable health and metrics built-in endpoints 2022-11-21 14:06:59 +02:00
Diamantis Tziotzios 0cd20605f0 user guide image update 2022-11-02 15:39:42 +02:00
Bernaldo Mihasi 2b692fa579 fix public api paths 2022-10-10 11:56:48 +03:00
Bernaldo Mihasi 5087a37e15 dockerization 2022-09-13 10:35:56 +03:00
Konstantina Galouni 49e42e9cba h2020_dataset.docx & WordBuilder.java & DataManagementPlanManager.java & DatasetManager.java: Updated footer of Dataset template to set title of DMP and Dataset. 2022-07-28 17:30:44 +03:00
Konstantina Galouni a2228a5fb6 #7597, #7893, #7895, #7898: Updated DMP template file (h2020.docx) for export | Added Dataset template file (h2020_dataset.docx) for export | Updated indentation on exported docs.
1. h2020.docx, h2020_dataset.docx: Updated DMP template & Added Dataset template.
2. application.properties, application-devel.properties, application-production.properties, application-staging.properties: Added property for dataset template file path configuration.h2020datasettemplate=documents/h2020_dataset.docx
3. ConfigLoader.java: Added method XWPFDocument getDatasetDocument();
4. DefaultConfigLoader.java: Added fiedls and methods for loading Dataset template (h2020_dataset.docx).
5. DataManagementPlanManager.java, DatasetManager.java, , HtmlToWorldBuilder.java, WordBuilder.java: Updated header/footer/first page in exports for DMPs and Datasets  | Updated indentation in exports.
2022-07-26 17:00:54 +03:00
Diamantis Tziotzios 2ecce0acb0 elastic conf changes 2022-06-14 14:22:59 +03:00
Bernaldo Mihasi 9c4d246ef5 heading changes on export template 2022-06-14 10:24:35 +03:00
Bernaldo Mihasi 0ac5902bfd 1. export redesign based on new word template
2. orcid researchers in export are clickable
2022-06-13 15:16:48 +03:00
Bernaldo Mihasi 73be5d9a98 1. export redesign: multiplicity #ref 7834, multiple select #ref 7836
2. fix bug in license api export
2022-06-08 16:27:47 +03:00
Bernaldo Mihasi 3433f58506 Add ssl support for elasticsearch 2022-06-08 16:23:49 +03:00
George Kalampokis 0235406246 Improve image caption styling 2022-06-07 14:52:48 +03:00
Diamantis Tziotzios 91566c9710 Merge branch 'saml2' into Development 2022-06-01 10:45:19 +03:00
argirok 03f7afede8 update openaire publication API to accept DOI query 2022-05-30 16:15:16 +03:00
George Kalampokis 11b0db21ac Reconfigure Zenodo prefilling query in order to query doi and conceptdoi alongside the title (ref #7802) 2022-05-30 11:59:49 +03:00
George Kalampokis 66511d2ed6 Further stability improvement over external urls query 2022-05-25 18:06:54 +03:00
George Kalampokis 0f4b209427 Add {query} field for external urls with configurable queries and make ORCID query more strict (similar to orcid's website) (ref #7798) 2022-05-25 17:37:20 +03:00
Bernaldo Mihasi 6c36253f09 artifact binding + decryption of assertion 2022-05-11 10:38:10 +03:00
Bernaldo Mihasi cfd0707f2a bug fix: license api-fields didnt get prefilled 2022-05-04 11:11:25 +03:00
Bernaldo Mihasi 8ac8f9588c #7680: Support SAML Authentication 2022-04-28 12:03:01 +03:00
argirok 62b60b93a8 URLConfiguration add FilterType. When filterType is "local" the filtering is applied in argos backend - not throught the API 2022-03-23 16:03:42 +02:00
Konstantina Galouni 2a9d8b8296 #7528: [NEW] Upload files field type.
1. Datasets.java: In "delete()" method, call also fileManager.markAllFilesOfEntityIdAsDeleted.
2. DatasetManager.java: Added method "deleteOldFilesAndAddNew()" which is called by "createOrUpdate()", to mark as deleted files that are not used any more and save the new ones.
3. DatabaseRepository.java & DatabaseRepositoryImpl.java: Include in DAOs FileUploadDAO.
4. ModelBuilder.java & ViewStyle.java: Incluse "upload" field type.
5. field-data.ts:
	a. In "getOrdinal()" method return Integer instead of int.
	b. In "getValidations()" method added null check.
	c. In methods "fromJsonObject()" and "toMap()" added special if clauses for "upload" field type.
6. application.properties:
   a. Added property "file.storage", to set the folder where the files will be permanently saved.
   b. Changed default spring.servlet.multipart.max-file-size and pring.servlet.multipart.max-request-size to 10 MB.
7. UserInvitationController.java: Deleted a print in System.out.
8. New files for upload field type: FileUploadDao.java, FileUploadDaoImpl.java, FileUpload.java, PostgreSQLEnumType.java (necessary for the enum EntityType), FileController.java, FileManager.java, UploadData.java.
2022-03-16 12:14:08 +02:00
George Kalampokis ea72f64ed4 Replace DB DOIFunder with a json config file 2022-03-01 14:37:49 +02:00
Bernaldo Mihasi 494ee47620 zenodo prefilling customizations 2022-02-22 15:53:25 +02:00
George Kalampokis f6cb4a40d2 Generalized (again) dataset prefilling 2022-02-22 11:58:39 +02:00
Bernaldo Mihasi 1a43c28496 add more prefilled fields 2022-02-21 17:38:16 +02:00
George Kalampokis 71b1010ea1 Merge remote-tracking branch 'origin/Development' into Development 2022-02-18 17:52:04 +02:00
George Kalampokis 11ff99fd77 Improve and generalize prefilling logic 2022-02-18 17:51:32 +02:00
argirok 938f98100f Merge branch 'Development' of code-repo.d4science.org:MaDgiK-CITE/argos into Development 2022-02-04 10:05:32 +02:00
Bernaldo Mihasi 048189952c format prefilling fixes 2022-02-02 14:15:33 +02:00
Bernaldo Mihasi 125a97baed keyword-tags exported-imported fixes, prefilling more mapping 2022-01-28 14:55:52 +02:00
argirok a3c4b3c143 Merge branch 'Development' of code-repo.d4science.org:MaDgiK-CITE/argos into Development
 Conflicts:
	dmp-backend/web/src/main/java/eu/eudat/logic/proxy/fetching/RemoteFetcherUtils.java
2022-01-24 11:12:56 +02:00
argirok 858fa3ee71 #7326 - static APIs
1. Rename of "Registries" to "Metadata"
2. add apis for taxonomy, licenses, publications
3. change data repositories: from querying all registered to all of type data repository
4. add separate APIs for journals and pub repositories
2022-01-21 15:44:51 +02:00
George Kalampokis 8f56b1874b Add extra prefilling mapping fields and add better support for prefilling tags 2022-01-19 17:51:30 +02:00
Bernaldo Mihasi 641088e289 Remove local configs, commited by mistake 2022-01-12 16:31:07 +02:00
DESKTOP-4ES9U2E\aldom dc1f59d8b5 Merge branch 'Development' of https://code-repo.d4science.org/MaDgiK-CITE/argos into Development 2022-01-12 14:11:18 +02:00
George Kalampokis 91f98a8759 Rename sample tag 2022-01-12 11:45:57 +02:00