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This commit is contained in:
Nikolaos Laskaris 2017-11-02 16:25:05 +02:00
parent f169394f07
commit f203c807db
13 changed files with 112 additions and 52 deletions
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4
dmp-backend/src/main/java/dao/entities/DMPDao.java
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@ -15,10 +15,6 @@ public interface DMPDao extends Dao<DMP, UUID> {
List<IDLabelPair> listAllIDsLabels();
List<DMP> listUserDMPs(String userID);
// public boolean createFromForm();
}

23
dmp-backend/src/main/java/dao/entities/DMPDaoImpl.java
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@ -41,29 +41,6 @@ public class DMPDaoImpl extends JpaDao<DMP, UUID> implements DMPDao {
.collect(Collectors.toList());
}
@Override
public List<DMP> listUserDMPs(String userID) {
// String queryString = "select ui from UserInfo ui join UserAuth ui.authentication ua where ua.username=:username";
String queryString = "select ui from UserInfo ui join Project ui.pro.authentication ua where ua.username=:username";
// TypedQuery<UserInfo> typedQuery = entityManager.createQuery(queryString, UserInfo.class);
// typedQuery.setParameter("username", username);
return null;
}
// @Override
// public boolean createFromForm(Map<String,String> keyVals) {
// String query = "insert into DMP () values"
// return false;
// }
}

1
dmp-backend/src/main/java/dao/entities/DatasetDao.java
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@ -14,5 +14,6 @@ public interface DatasetDao extends Dao<Dataset, UUID> {
List<IDLabelPair> listAllIDsLabels();
List<Dataset> getDatasetsOfDmp(UUID dmpID);
}

10
dmp-backend/src/main/java/dao/entities/DatasetDaoImpl.java
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@ -1,6 +1,7 @@
package dao.entities;
import java.util.List;
import java.util.Set;
import java.util.UUID;
import java.util.stream.Collectors;
@ -38,5 +39,14 @@ public class DatasetDaoImpl extends JpaDao<Dataset, UUID> implements DatasetDao
.collect(Collectors.toList());
}
@Override
public List<Dataset> getDatasetsOfDmp(UUID dmpID) {
String queryString = "FROM Dataset dataset where dataset.dmp.id=:dmpID";
Query query = (Query) entityManager.createQuery(queryString);
query.setParameter("dmpID", dmpID);
List<Dataset> datasets = (List<Dataset>) query.getResultList();
return datasets;
}
}

4
dmp-backend/src/main/java/entities/DMP.java
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@ -191,7 +191,7 @@ public class DMP implements Serializable {
/*
public String toString() {
try {
return new ObjectMapper().enable(SerializationFeature.INDENT_OUTPUT).writeValueAsString(this);
@ -200,4 +200,6 @@ public class DMP implements Serializable {
}
}
*/
}

22
dmp-backend/src/main/java/entities/Dataset.java
View File

@ -28,14 +28,14 @@ import com.fasterxml.jackson.annotation.JsonInclude;
import com.fasterxml.jackson.annotation.ObjectIdGenerators;
import com.fasterxml.jackson.annotation.JsonInclude.Include;
@Entity(name = "Dataset")
@Entity
@Table(name="\"Dataset\"")
@JsonIdentityInfo(generator=ObjectIdGenerators.PropertyGenerator.class, property="id")
public class Dataset implements Serializable {
private static final long serialVersionUID = 3575723814399553259L;
//public Dataset () {}
public Dataset () {}
@Id
@ -67,7 +67,9 @@ public class Dataset implements Serializable {
@JoinColumn(name = "\"Profile\"", nullable = true)
private DatasetProfile profile;
@Type(type="typedefinition.XMLType")
@Column(name = "\"Reference\"", columnDefinition = "xml", nullable = true)
private String reference;
@OneToMany(fetch = FetchType.LAZY)
@JoinTable(name="\"DatasetDataRepository\"",
@ -182,5 +184,19 @@ public class Dataset implements Serializable {
public void setDataRepositories(Set<DataRepository> dataRepositories) {
this.dataRepositories = dataRepositories;
}
public String getReference() {
return reference;
}
public void setReference(String reference) {
this.reference = reference;
}
}

18
dmp-backend/src/main/java/helpers/SafeCleanAttribs.java Normal file
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@ -0,0 +1,18 @@
package helpers;
import entities.DMP;
import entities.Dataset;
public class SafeCleanAttribs {
public static void clean(Dataset dataset) {
DMP dmp = dataset.getDmp();
if(dmp!=null) {
DMP newdmp = new DMP();
newdmp.setId(dmp.getId());
dataset.setDmp(newdmp);
}
}
}

10
dmp-backend/src/main/java/helpers/SerializerProvider.java
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@ -7,9 +7,11 @@ import java.util.stream.Collectors;
import org.apache.commons.lang3.StringUtils;
import com.fasterxml.jackson.annotation.JsonInclude.Include;
import com.fasterxml.jackson.core.JsonParseException;
import com.fasterxml.jackson.core.JsonProcessingException;
import com.fasterxml.jackson.core.type.TypeReference;
import com.fasterxml.jackson.databind.DeserializationFeature;
import com.fasterxml.jackson.databind.JavaType;
import com.fasterxml.jackson.databind.JsonMappingException;
import com.fasterxml.jackson.databind.ObjectMapper;
@ -30,11 +32,11 @@ public class SerializerProvider {
public static void initialize() {
Hibernate5Module module = new Hibernate5Module();
module.enable(Feature.SERIALIZE_IDENTIFIER_FOR_LAZY_NOT_LOADED_OBJECTS);
//module.enable(Feature.SERIALIZE_IDENTIFIER_FOR_LAZY_NOT_LOADED_OBJECTS);
objectMapper = new ObjectMapper()
// .setSerializationInclusion(Include.NON_NULL)
// .configure(DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES, false)
.registerModule(new Hibernate5Module())
//.setSerializationInclusion(Include.NON_NULL)
//.configure(DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES, false)
.registerModule(module)
;
}

16
dmp-backend/src/main/java/rest/entities/DMPs.java
View File

@ -147,6 +147,10 @@ public class DMPs {
@Transactional
@RequestMapping(method = RequestMethod.POST, value = { "/dmp/update" }, consumes = "application/json", produces="application/json")
public @ResponseBody ResponseEntity<Object> updateDMP(@RequestBody DMP dmp) {
DMP previousDmp = dMPDao.read(dmp.getId());
addForeignElems(previousDmp, dmp);
try {
DMP updatedDMP = dMPDao.update(dmp);
return ResponseEntity.status(HttpStatus.CREATED).body(SerializerProvider.toJson(updatedDMP));
@ -250,7 +254,7 @@ public class DMPs {
@RequestMapping(method = RequestMethod.POST, value = { "/dmp/getdatasets" }, consumes = "application/json", produces="application/json")
public @ResponseBody ResponseEntity<Object> getDatasetsOfDMP(@RequestBody DMP dmp) {
try {
Set<Dataset> datasets = dMPDao.read(dmp.getId()).getDataset();
List<Dataset> datasets = datasetDao.getDatasetsOfDmp(dmp.getId());
return ResponseEntity.status(HttpStatus.OK).body(SerializerProvider.toJson(datasets));
} catch (Exception e) {
return ResponseEntity.status(HttpStatus.INTERNAL_SERVER_ERROR).body("{\"msg\":\"Could not get datasets of DMP!\"");
@ -306,7 +310,7 @@ public class DMPs {
}
@RequestMapping(method = RequestMethod.POST, value = { "/dmp/createofuser" }, produces="text/plain")
@RequestMapping(method = RequestMethod.POST, value = { "/dmp/createofuser" }, produces="text/plain", consumes = "application/json")
public @ResponseBody ResponseEntity<Object> createDmpOfUser(@RequestBody DMP dmp){
@ -382,5 +386,13 @@ public class DMPs {
private static void addForeignElems(DMP existing, DMP newone) {
newone.setDataset(existing.getDataset());
newone.setOrganisations(existing.getOrganisations());
newone.setResearchers(existing.getResearchers());
newone.setUsers(existing.getUsers());
}
}

4
dmp-backend/src/main/java/rest/entities/DatasetProfiles.java
View File

@ -1,10 +1,6 @@
package rest.entities;
import java.io.IOException;
import java.io.PrintStream;
import java.util.HashSet;
import java.util.List;
import java.util.Set;
import java.util.UUID;
import java.util.stream.Collectors;

25
dmp-backend/src/main/java/rest/entities/Datasets.java
View File

@ -50,6 +50,7 @@ import entities.DatasetProfileRuleset;
import entities.DatasetProfileViewstyle;
import entities.Organisation;
import entities.Project;
import helpers.SafeCleanAttribs;
import helpers.SerializerProvider;
import helpers.Transformers;
import responses.RestResponse;
@ -92,6 +93,7 @@ public class Datasets {
public @ResponseBody ResponseEntity<Object> getDataset(@PathVariable("id") String id) {
try {
Dataset ds = datasetDao.read(UUID.fromString(id));
ds.setDmp(ds.getDmp());
return ResponseEntity.status(HttpStatus.OK).body(SerializerProvider.toJson(ds));
}
catch(Exception ex) {
@ -118,7 +120,7 @@ public class Datasets {
}
@RequestMapping(method = RequestMethod.POST, value = { "/dataset/create" }, consumes = "application/json")
@RequestMapping(method = RequestMethod.POST, value = { "/dataset/create" }, consumes = "application/json", produces="application/json")
public @ResponseBody ResponseEntity<Object> createDataset(@RequestBody Dataset dataset) {
dataset.setId(null);
@ -133,13 +135,21 @@ public class Datasets {
}
@RequestMapping(method = RequestMethod.POST, value = { "/dataset/update" }, consumes = "application/json")
public @ResponseBody ResponseEntity<Object> updateDataset(@RequestBody Dataset dataset) {
@RequestMapping(method = RequestMethod.POST, value = { "/dataset/update" }, consumes = "application/json", produces="application/json")
public @ResponseBody ResponseEntity<Object> updateDataset(@RequestBody String datasetJson) {
Dataset dataset;
try {
dataset = SerializerProvider.fromJson(datasetJson, Dataset.class);
} catch (Exception e) {
return ResponseEntity.status(HttpStatus.INTERNAL_SERVER_ERROR).body("Could not create or update Dataset! Reason: " + e.getMessage());
}
SafeCleanAttribs.clean(dataset);
try {
dataset = datasetDao.update(dataset);
RestResponse rr = new RestResponse("Updated dataset with id: "+dataset.toString(), dataset.getId().toString());
return ResponseEntity.status(HttpStatus.CREATED).body(rr.toString());
return ResponseEntity.status(HttpStatus.CREATED).body(SerializerProvider.toJson(dataset));
}
catch(Exception ex) {
ex.printStackTrace();
@ -149,8 +159,6 @@ public class Datasets {
}
@RequestMapping(method = RequestMethod.POST, value = { "/dataset/delete" }, consumes = "application/json")
public @ResponseBody ResponseEntity<Object> deleteDataset(@RequestBody Dataset dataset) {
@ -208,5 +216,8 @@ public class Datasets {
}

2
dmp-backend/src/main/java/rest/entities/Projects.java
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@ -210,7 +210,7 @@ public class Projects {
}
@Transactional
@RequestMapping(method = RequestMethod.POST, value = { "/project/createofuser" }, produces="text/plain")
@RequestMapping(method = RequestMethod.POST, value = { "/project/createofuser" }, produces="text/plain", consumes = "application/json")
public @ResponseBody ResponseEntity<Object> createProjectOfUser(@RequestBody Project project){

25
dmp-backend/src/test/java/TestRest.java
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@ -36,6 +36,7 @@ import dao.entities.RegistryDao;
import dao.entities.ResearcherDao;
import dao.entities.ServiceDao;
import dao.entities.UserInfoDao;
import entities.DMP;
import entities.DatasetProfile;
import entities.DatasetProfileRuleset;
import entities.DatasetProfileViewstyle;
@ -160,7 +161,7 @@ public class TestRest {
@Test
//@Test
public void testUserProject() {
// System.out.println(projectsService.listProjects().getBody());
@ -186,15 +187,33 @@ public class TestRest {
}
// @Test
//@Test
public void testDmpUser() {
System.out.println(dmpsService.getDmpsOfUser().getBody());
// System.out.println(dmpsService.getDmpsOfUser());
DMP dmp = new DMP();
dmp.setId(UUID.fromString("52239f0e-4460-4459-a393-bffcb833f39d"));
System.out.println(dmpsService.getDatasetsOfDMP(dmp).getBody());
assertEquals("aaa", "aaa");
}
@Test
public void testDataset() {
System.out.println(datasetsService.getAllDatasets().getBody());
// System.out.println(dmpsService.getDatasetsOfDMP(dmp).getBody());
assertEquals("aaa", "aaa");
}
}