Merge branch 'master' of gitlab.eudat.eu:dmp/OpenAIRE-EUDAT-DMP-service-pilot

This commit is contained in:
annampak 2017-10-18 16:33:05 +03:00
commit eced040f8d
54 changed files with 888 additions and 58 deletions

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@ -23,6 +23,7 @@ import { ResearcherService } from './services/researcher-service';
import { OrganisationService } from './services/organisation-service';
import { DmpProfileService } from './services/dmpprofile-service';
import { RegistryService } from './services/registry-service';
import { DatarepoService } from './services/datarepo-service';
import { Toolbox } from './services/toolbox';
import { DataFilterPipe } from './pipes/data-filter.pipe';
@ -33,6 +34,7 @@ import { ProjectTableFilterPipe } from './pipes/project-table-filter.pipe';
import { RegistryTableFilterPipe } from './pipes/registry-table-filter.pipe';
import { OrganisationTableFilterPipe } from './pipes/organisation-table-filter.pipe';
import { ResearcherTableFilterPipe } from './pipes/researcher-table-filter.pipe';
import { DatarepoTableFilterPipe } from './pipes/datarepo-table-filter.pipe';
import { GooggleSignInComponent } from './login/googgle-sign-in/googgle-sign-in.component';
@ -53,6 +55,7 @@ import { OrganisationEditorComponent } from './managers/organisation-editor/orga
import { RegistryEditorComponent } from './managers/registry-editor/registry-editor.component';
import { ServiceEditorComponent } from './managers/service-editor/service-editor.component';
import { ResearcherEditorComponent } from './managers/researcher-editor/researcher-editor.component';
import { DatareposEditorComponent } from './managers/datarepos-editor/datarepos-editor.component';
@ -66,6 +69,7 @@ import { ResearcherEditorComponent } from './managers/researcher-editor/research
RegistryTableFilterPipe,
ServiceTableFilterPipe,
ResearcherTableFilterPipe,
DatarepoTableFilterPipe,
AppComponent,
GooggleSignInComponent,
@ -82,7 +86,8 @@ import { ResearcherEditorComponent } from './managers/researcher-editor/research
RegistryEditorComponent,
ServiceEditorComponent,
MainSignInComponent,
ResearcherEditorComponent
ResearcherEditorComponent,
DatareposEditorComponent
],
imports: [
BrowserModule,
@ -97,7 +102,7 @@ import { ResearcherEditorComponent } from './managers/researcher-editor/research
AppRouting
],
providers: [ DatasetsServiceService, TokenService, DmpsServiceService, ResearcherService,
DialogService, DatasetProfileService, ProjectService, OrganisationService,
DialogService, DatasetProfileService, ProjectService, OrganisationService, DatarepoService,
DmpProfileService, RegistryService, ServiceService, NativeLoginService, HttpModule, Toolbox, HttpClient, RestBase],
bootstrap: [AppComponent]
})

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@ -112,6 +112,7 @@ export class DatasetsViewerComponent implements OnInit, AfterViewInit {
onFocusOutProfileWin($event, value:string) {
this.nullSafeProfile();
if(this.haveChanges){
@ -121,7 +122,7 @@ export class DatasetsViewerComponent implements OnInit, AfterViewInit {
//create profile and a) assign it on data[] and on current profile b) assign it to dataset
this.datasetProfileService.setDatasetProfile(this.profile).subscribe((resp) => {
/*
console.log("SERVICE RESPONSE: ");
console.log(resp);
console.log(resp.json());
@ -141,13 +142,31 @@ export class DatasetsViewerComponent implements OnInit, AfterViewInit {
simple_notifier("success",null,"Updated profile element");
});
});
*/
simple_notifier("success",null,"Updated profile element");
});
}
else{
//this.getDatasetFromDataArray()
console.log("this.profile")
console.log(this.profile)
console.log(this.profile)
this.profile.dataset = {"id": this.profile.dataset};
this.datasetProfileService.setDatasetProfile(this.profile).subscribe(
response => {
simple_notifier("success",null,"Saved DMP Profile");
console.log(response);
},
err => {
simple_notifier("danger",null,"Could not save DMP Profile");
console.log(err);
}
);
}
}
@ -365,4 +384,4 @@ export class DatasetsViewerComponent implements OnInit, AfterViewInit {
}
}
}

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@ -23,11 +23,11 @@
<li [ngClass]="{true:'active'}[currentlySelected=='dmpprofiles']" (click)="setActive('dmpprofiles')" [routerLink]="['/dmpprofiles']">DMP profiles</li>
</ul>
<li data-toggle="collapse" data-target="#data-repositories" class="collapsed">
<li data-toggle="collapse" data-target="#manage-repositories" class="collapsed">
<a style="cursor:pointer"><i class="fa fa-database"></i> Manage Data Repositories <span class="arrow"></span></a>
</li>
<ul class="sub-menu collapse" id="data-repositories">
<li>Data Repositories</li>
<ul class="sub-menu collapse" id="manage-repositories">
<li [ngClass]="{true:'active'}[currentlySelected=='datarepos']" (click)="setActive('datarepos')" [routerLink]="['/datarepos']">Data Repositories</li>
<li>Non-assigned repositories</li>
</ul>

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@ -0,0 +1,33 @@
.invisible {
display:none;
}
.visible {
display:block;
}
tr.hover:hover > * {
background-color: #eeeeee;
}
.editor-container{
padding-top: 10px;
padding-right: 10px;
padding-bottom: 10px;
padding-left: 10px;
}
.button-150px {
max-width: 150px;
}
.ng-template{
text-align: right;
}
.grayout-empty-table {
opacity: 0.6; /* Real browsers */
filter: alpha(opacity = 60); /* MSIE */
text-align: center;
vertical-align: middle;
}

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@ -0,0 +1,122 @@
<div class="editor-container container">
<div [ngClass]="{true:'visible', false:'invisible'}[tableVisible]">
<table class="table table-striped" [mfData]="tableData | datarepoTableFilter : filterQuery" #mf="mfDataTable" [mfRowsOnPage]="rowsOnPage" [(mfSortBy)]="sortBy" [(mfSortOrder)]="sortOrder">
<thead>
<tr>
<th colspan="1">
<input class="form-control" [(ngModel)]="filterQuery" placeholder='Filter'/>
</th>
<th>
<button class="btn btn-default" (click)="refreshTable($event)">
<span class="glyphicon glyphicon-refresh"></span>
</button>
</th>
</tr>
<tr>
<th [ngClass]="{true:'visible', false:'invisible'}[showIDs]"><mfDefaultSorter by="id">ID</mfDefaultSorter></th>
<th><mfDefaultSorter by="label">Label</mfDefaultSorter></th>
<th><mfDefaultSorter by="abbreviation">Abbreviation</mfDefaultSorter></th>
<th><mfDefaultSorter by="reference">Reference</mfDefaultSorter></th>
<th><mfDefaultSorter by="uri">Uri</mfDefaultSorter></th>
<th><mfDefaultSorter by="definition">Definition</mfDefaultSorter></th>
</tr>
</thead>
<tbody>
<tr class="grayout-empty-table" *ngIf="!mf.data[0]" [contextMenu]="basicMenu" [contextMenuSubject]="datarepo"> <td colspan="5">No elements</td></tr>
<tr *ngFor="let datarepo of mf.data" class="hover" [contextMenu]="basicMenu" [contextMenuSubject]="datarepo">
<td [ngClass]="{true:'visible', false:'invisible'}[showIDs]">{{datarepo.id}}</td>
<td>{{datarepo?.label}}</td>
<td>{{datarepo?.abbreviation}}</td>
<td>{{datarepo?.reference}}</td>
<td>{{datarepo?.uri}}</td>
<td>{{datarepo?.definition}}</td>
</tr>
</tbody>
<tfoot>
<tr>
<td colspan="5">
<mfBootstrapPaginator [rowsOnPageSet]="[10,20,40]"></mfBootstrapPaginator>
</td>
</tr>
</tfoot>
</table>
</div>
<!-- this is the dmp editor -->
<div [ngClass]="{true:'visible', false:'invisible'}[editorVisible]">
<div> <!-- form container -->
<div style="display:block;">
<button (click)="switchToTable()" class="btn btn-lg btn-success pull-right" style="max-width:120px;">
<span class="glyphicon glyphicon-arrow-left"></span> Go back
</button>
</div>
<form [formGroup]="datarepoEditorForm" novalidate style="display:block;">
<div class="form-group" [ngClass]="{null:'invisible'}[editingDatarepo?.id]">
<label class="center-block">ID: {{editingDatarepo?.id}}
<input class="form-control invisible" formControlName="id" [ngModel]="editingDatarepo?.id">
</label>
</div>
<div class="form-group">
<label class="center-block">Label:
<input class="form-control" formControlName="label" [ngModel]="editingDatarepo?.label" (ngModelChange)="editingDatarepo.label=$event">
</label>
</div>
<div class="form-group">
<label class="center-block">Abbreviation:
<input class="form-control" formControlName="abbreviation" [ngModel]="editingDatarepo?.abbreviation" (ngModelChange)="editingDatarepo.abbreviation=$event">
</label>
</div>
<div class="form-group">
<label class="center-block">Reference:
<input class="form-control" formControlName="reference" [ngModel]="editingDatarepo?.reference" (ngModelChange)="editingDatarepo.reference$event">
</label>
</div>
<div class="form-group">
<label class="center-block">Uri:
<input class="form-control" formControlName="uri" [ngModel]="editingDatarepo?.uri" (ngModelChange)="editingDatarepo.uri$event">
</label>
</div>
<div class="form-group">
<label class="center-block">Definition:
<input class="form-control" formControlName="definition" [ngModel]="editingDatarepo?.definition" (ngModelChange)="editingDatarepo.definition$event">
</label>
</div>
<div class="form-group" style="width:540px;">
<button style="float:right;" type="submit" (click)="save($event, $data, $form)"class="btn btn-success">Save</button>
</div>
</form>
<!--
<p>Form value: {{ datarepoEditorForm.value | json }}</p>
-->
</div>
</div>
</div>
<context-menu>
<ng-template contextMenuItem [subMenu]="manage">
<span></span>Manage data repositories
</ng-template>
<context-menu #manage>
<ng-template contextMenuItem (execute)="newDatarepo($event?.item)">
<span class="glyphicon glyphicon-plus"></span>Create data repository
</ng-template>
<ng-template contextMenuItem (execute)="editDatarepo($event?.item?.id)">
<span class="glyphicon glyphicon-pencil"></span>Edit this data repository
</ng-template>
<ng-template contextMenuItem (execute)="delete($event?.item?.id)">
<span class="glyphicon glyphicon-trash red"></span> Delete this
</ng-template>
</context-menu>
<ng-template contextMenuItem>
<span></span>Show full tree connections
</ng-template>
</context-menu>

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@ -0,0 +1,25 @@
import { async, ComponentFixture, TestBed } from '@angular/core/testing';
import { DatareposEditorComponent } from './datarepos-editor.component';
describe('DatareposEditorComponent', () => {
let component: DatareposEditorComponent;
let fixture: ComponentFixture<DatareposEditorComponent>;
beforeEach(async(() => {
TestBed.configureTestingModule({
declarations: [ DatareposEditorComponent ]
})
.compileComponents();
}));
beforeEach(() => {
fixture = TestBed.createComponent(DatareposEditorComponent);
component = fixture.componentInstance;
fixture.detectChanges();
});
it('should be created', () => {
expect(component).toBeTruthy();
});
});

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@ -0,0 +1,137 @@
import { Component, OnInit, ViewChild } from '@angular/core';
import { DatarepoService } from '../../services/datarepo-service';
import { ContextMenuComponent } from 'ngx-contextmenu';
import { ReactiveFormsModule } from '@angular/forms';
import { FormBuilder, FormGroup, Validators } from '@angular/forms';
import '../../../assets/custom.js';
declare function simple_notifier(type: string, title: string, message:string): any;
@Component({
selector: 'app-datarepos-editor',
templateUrl: './datarepos-editor.component.html',
styleUrls: ['./datarepos-editor.component.css']
})
export class DatareposEditorComponent implements OnInit {
constructor(private datarepoService : DatarepoService, private fb: FormBuilder) {
}
//whole dmp data model
tableData : any[] = new Array();
//datarepos editor data model
editingDatarepo: any = {};
datarepoEditorForm : any;
//required by the table
public filterQuery = "";
public rowsOnPage = 10;
//public sortBy = "email";
public sortOrder = "asc";
//visibility rules for containers
tableVisible: boolean = true;
editorVisible: boolean = false;
// for tableIds
showIDs : boolean = false;
ngOnInit() {
this.getAllDatarepos(false);
this.createDatareposEditorForm();
}
createDatareposEditorForm(){
this.datarepoEditorForm = this.fb.group({
id: null,
label: ['', Validators.required ],
abbreviation: '',
reference: '',
uri: '',
definition: ''
});
}
switchToTable(){
this.tableVisible = true;
this.editorVisible = false;
}
switchToEditor(datarepoID){
this.tableVisible = false;
this.editorVisible = true;
if(datarepoID == null){
this.editingDatarepo = {id: null, label: "", abbreviation: "", reference: "", uri: "", definition: "" };
}
else{
this.editingDatarepo = this.tableData.filter((datarepo) => datarepo.id === datarepoID)[0];
}
}
getAllDatarepos(showNotification : boolean){
this.datarepoService.getAllDatarepos().subscribe( (data) => {
this.tableData = data;
if(showNotification)
simple_notifier("info",null,"Refreshed the table");
});
}
editDatarepo(datarepo){
this.switchToEditor(datarepo);
}
newDatarepo(){
this.switchToEditor(null);
}
save(mouseEvent){
this.datarepoService.create(this.datarepoEditorForm.value).subscribe(
response => {
simple_notifier("success",null,"Saved data repository");
this.getAllDatarepos(false);
this.switchToTable();
},
err => {
simple_notifier("danger",null,"Could not save data repository");
}
);
}
delete(datarepo){
this.datarepoService.delete(datarepo).subscribe(
(response) => {
simple_notifier("success",null,"Deleted data repository");
this.getAllDatarepos(false);
this.switchToTable();
},
(err) => {
simple_notifier("danger",null,"Could not delete data repository");
}
)
}
refreshTable($event){
this.getAllDatarepos(true);
}
@ViewChild(ContextMenuComponent) public basicMenu: ContextMenuComponent;
}

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@ -102,7 +102,9 @@
<button style="float:right;" type="submit" (click)="save($event, $data, $form)"class="btn btn-success">Save</button>
</div>
</form>
<!--
<p>Form value: {{ dmpEditorForm.value | json }}</p>
-->
</div>
</div>

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@ -125,6 +125,7 @@ export class DmpEditorComponent implements OnInit {
response => {
simple_notifier("success",null,"Saved dmp");
this.getAllDmps(false);
this.switchToTable();
},
err => {
simple_notifier("danger",null,"Could not save dmp");

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@ -67,7 +67,9 @@
<button style="float:right;" type="submit" (click)="save($event, $data, $form)"class="btn btn-success">Save</button>
</div>
</form>
<!--
<p>Form value: {{ dmpProfileEditorForm.value | json }}</p>
-->
</div>
</div>

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@ -100,6 +100,7 @@ export class DmpProfileEditorComponent implements OnInit {
response => {
simple_notifier("success",null,"Saved DMP Profile");
this.getAllDmpProfiles(false);
this.switchToTable();
},
err => {
simple_notifier("danger",null,"Could not save DMP Profile");

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@ -89,7 +89,9 @@
<button style="float:right;" type="submit" (click)="save($event, $data, $form)"class="btn btn-success">Save</button>
</div>
</form>
<!--
<p>Form value: {{ organisationEditorForm.value | json }}</p>
-->
</div>
</div>

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@ -100,6 +100,7 @@ export class OrganisationEditorComponent implements OnInit {
response => {
simple_notifier("success",null,"Saved organisation");
this.getAllOrganisations(false);
this.switchToTable();
},
err => {
simple_notifier("danger",null,"Could not save organisation");
@ -111,7 +112,7 @@ export class OrganisationEditorComponent implements OnInit {
this.organisationService.delete(organisation).subscribe(
(response) => {
simple_notifier("success",null,"Deleted organisation");
this.refreshTable(false);
this.getAllOrganisations(false);
this.switchToTable();
},
(err) => {

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@ -88,7 +88,9 @@
<button style="float:right;" type="submit" (click)="save($event, $data, $form)"class="btn btn-success">Save</button>
</div>
</form>
<!--
<p>Form value: {{ projectEditorForm.value | json }}</p>
-->
</div>
</div>

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@ -104,6 +104,7 @@ export class ProjectEditorComponent implements OnInit {
response => {
simple_notifier("success",null,"Saved project");
this.getAllProjects(false);
this.switchToTable();
},
err => {
simple_notifier("danger",null,"Could not save project");

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@ -88,7 +88,9 @@
<button style="float:right;" type="submit" (click)="save($event, $data, $form)"class="btn btn-success">Save</button>
</div>
</form>
<!--
<p>Form value: {{ registryEditorForm.value | json }}</p>
-->
</div>
</div>

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@ -102,6 +102,8 @@ export class RegistryEditorComponent implements OnInit {
this.registryService.create(this.registryEditorForm.value).subscribe(
response => {
simple_notifier("success",null,"Saved registry");
this.getAllRegistries(false);
this.switchToTable();
},
err => {
simple_notifier("danger",null,"Could not save registry");
@ -113,8 +115,8 @@ export class RegistryEditorComponent implements OnInit {
this.registryService.delete(registry).subscribe(
(response) => {
simple_notifier("success",null,"Deleted registry");
this.getAllRegistries(false);
this.switchToTable();
this.refreshTable(false);
},
(err) => {
simple_notifier("danger",null,"Could not delete registry");

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@ -89,7 +89,9 @@
<button style="float:right;" type="submit" (click)="save($event, $data, $form)"class="btn btn-success">Save</button>
</div>
</form>
<!--
<p>Form value: {{ researcherEditorForm.value | json }}</p>
-->
</div>
</div>

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@ -100,6 +100,7 @@ export class ResearcherEditorComponent implements OnInit {
response => {
simple_notifier("success",null,"Saved resercher");
this.getAllResearchers(false);
this.switchToTable();
},
err => {
simple_notifier("danger",null,"Could not save researcher");

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@ -89,7 +89,9 @@
<button style="float:right;" type="submit" (click)="save($event, $data, $form)"class="btn btn-success">Save</button>
</div>
</form>
<!--
<p>Form value: {{ serviceEditorForm.value | json }}</p>
-->
</div>
</div>

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@ -0,0 +1,29 @@
import * as _ from "lodash";
import {Pipe, PipeTransform} from "@angular/core";
@Pipe({
name: "datarepoTableFilter"
})
export class DatarepoTableFilterPipe implements PipeTransform {
transform(array: any[], query: string): any {
if (query) {
return _.filter(array, row => {
if (row.uri == null) row.uri = "";
if (row.label == null) row.label = "";
if (row.id == null) row.id = "";
return (
row.label.indexOf(query) > -1 ||
//row.version == query ||
row.id.indexOf(query) > -1
)
});
}
return array;
}
}

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@ -11,6 +11,7 @@ import { ServiceEditorComponent } from './managers/service-editor/service-editor
import { RegistryEditorComponent } from './managers/registry-editor/registry-editor.component';
import { OrganisationEditorComponent } from './managers/organisation-editor/organisation-editor.component';
import { ResearcherEditorComponent } from './managers/researcher-editor/researcher-editor.component';
import { DatareposEditorComponent } from './managers/datarepos-editor/datarepos-editor.component';
import { MainWindowComponent } from './main-window/main-window.component';
@ -29,6 +30,10 @@ export const routes: Routes = [
path: 'datasets',
component: DatasetsViewerComponent
},
{
path: 'datarepos',
component: DatareposEditorComponent
},
{
path: 'datasets/profile',
component: ProfileEditorComponent

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@ -0,0 +1,46 @@
import { Component, Input, OnInit, AfterViewChecked, ViewChild } from '@angular/core';
import { HttpClient , HttpHeaders, HttpParams} from '@angular/common/http';
import { TokenService, TokenProvider } from './login/token.service'
import { Injectable } from '@angular/core';
import { Toolbox } from '../services/toolbox';
import {RestBase} from './rest-base';
import 'rxjs/Rx';
@Injectable()
export class DatarepoService implements OnInit {
constructor(public restBase: RestBase) {
}
ngOnInit(){
}
getDatarepoIdsLabels() {
return this.restBase.get("datarepo/listAllLabelIDs");
}
getDatarepoIds(){
return this.restBase.get("datarepos");
}
getAllDatarepos(){
return this.restBase.get("datarepo/getAll");
}
create(datarepo){
return this.restBase.post("datarepo/create", datarepo);
}
delete(datarepoID){
var datarepo = {"id": datarepoID};
return this.restBase.post("datarepo/delete", datarepo);
}
}

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@ -19,12 +19,12 @@ export class DatasetProfileService implements OnInit {
getDatasetProfileById(datasetProfileID){
return this.restBase.get("datasetprofile/"+datasetProfileID)
.map((response: Response) => response.json());
return this.restBase.get("datasetprofile/"+datasetProfileID);
//.map((response: Response) => response.json());
}
setDatasetProfile(datasetProfile){
return this.restBase.post("setDatasetProfile", datasetProfile);
return this.restBase.post("datasetprofile/set", datasetProfile);
}

3
dmp-backend/package-lock.json generated Normal file
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@ -0,0 +1,3 @@
{
"lockfileVersion": 1
}

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@ -4,7 +4,11 @@ import java.util.UUID;
import dao.Dao;
import entities.DMPResearcher;
import entities.Researcher;
public interface DMPResearcherDao extends Dao<DMPResearcher, UUID> {
Researcher getResearcherByEmail(String email);
}

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@ -2,9 +2,13 @@ package dao.entities;
import java.util.UUID;
import javax.persistence.TypedQuery;
import org.hibernate.NonUniqueResultException;
import dao.JpaDao;
import entities.DMPResearcher;
import entities.Researcher;
public class DMPResearcherDaoImpl extends JpaDao<DMPResearcher, UUID> implements DMPResearcherDao {
@ -12,6 +16,20 @@ public class DMPResearcherDaoImpl extends JpaDao<DMPResearcher, UUID> implements
// TODO Auto-generated method stub
return null;
}
@Override
public Researcher getResearcherByEmail(String email) {
String queryString = "FROM Researcher researcher where primaryEmail=:email";
TypedQuery<Researcher> typedQuery = entityManager.createQuery(queryString, Researcher.class);
typedQuery.setParameter("email", email);
try {
return typedQuery.getSingleResult();
}catch(Exception ex) {
System.out.println(ex.getMessage());
return null;
}
}
}

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@ -5,6 +5,7 @@ import java.util.UUID;
import dao.Dao;
import entities.Registry;
import entities.Researcher;
import entities.responses.IDLabelPair;
public interface RegistryDao extends Dao<Registry, UUID> {
@ -12,5 +13,6 @@ public interface RegistryDao extends Dao<Registry, UUID> {
List<UUID> listAllIDs();
List<IDLabelPair> listAllIDsLabels();
}

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@ -10,6 +10,7 @@ import org.hibernate.query.Query;
import dao.JpaDao;
import entities.Registry;
import entities.Researcher;
import entities.responses.IDLabelPair;
public class RegistryDaoImpl extends JpaDao<Registry, UUID> implements RegistryDao {
@ -37,6 +38,6 @@ public class RegistryDaoImpl extends JpaDao<Registry, UUID> implements RegistryD
})
.collect(Collectors.toList());
}
}

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@ -12,5 +12,7 @@ public interface ResearcherDao extends Dao<Researcher, UUID> {
List<UUID> listAllIDs();
List<IDLabelPair> listAllIDsLabels();
Researcher getResearcherByEmail(String email);
}

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@ -38,6 +38,16 @@ public class ResearcherDaoImpl extends JpaDao<Researcher, UUID> implements Resea
})
.collect(Collectors.toList());
}
@Override
public Researcher getResearcherByEmail(String email) {
String queryString = "FROM Researcher researcher where researcher.primaryEmail=:email";
TypedQuery<Researcher> typedQuery = entityManager.createQuery(queryString, Researcher.class);
return null;
}
}

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@ -1,9 +1,9 @@
package dao.entities.security;
package dao.entities;
import java.util.UUID;
import dao.Dao;
import entities.security.UserInfo;
import entities.UserInfo;
public interface UserInfoDao extends Dao<UserInfo, UUID> {

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@ -1,4 +1,4 @@
package dao.entities.security;
package dao.entities;
import java.util.List;
import java.util.UUID;
@ -7,8 +7,8 @@ import javax.persistence.NoResultException;
import javax.persistence.TypedQuery;
import dao.JpaDao;
import entities.UserInfo;
import entities.security.UserAuth;
import entities.security.UserInfo;
public class UserInfoDaoImpl extends JpaDao<UserInfo, UUID> implements UserInfoDao {

View File

@ -88,6 +88,14 @@ public class DMP implements Serializable {
private Set<Researcher> researchers;
// @OneToMany(fetch = FetchType.EAGER)
// @JoinTable(name="\"UserDMP\"",
// joinColumns={@JoinColumn(name="dmp", referencedColumnName="\"ID\"")},
// inverseJoinColumns={@JoinColumn(name="user", referencedColumnName="\"ID\"")}
// )
// private Set<UserInfo> users;
public UUID getId() {
return id;
}
@ -168,6 +176,15 @@ public class DMP implements Serializable {
this.researchers = researchers;
}
// public Set<UserInfo> getUsers() {
// return users;
// }
//
// public void setUsers(Set<UserInfo> users) {
// this.users = users;
// }
public String toString() {
try {
return new ObjectMapper().enable(SerializationFeature.INDENT_OUTPUT).writeValueAsString(this);

View File

@ -0,0 +1,76 @@
//package entities;
//
//import java.io.Serializable;
//import java.util.UUID;
//
//import javax.persistence.Column;
//import javax.persistence.Entity;
//import javax.persistence.GeneratedValue;
//import javax.persistence.Id;
//import javax.persistence.Table;
//
//import org.hibernate.annotations.GenericGenerator;
//import org.hibernate.annotations.Type;
//
//import com.fasterxml.jackson.annotation.JsonIdentityInfo;
//import com.fasterxml.jackson.annotation.ObjectIdGenerators;
//
//@Entity
//@Table(name="\"UserInfo\"")
//@JsonIdentityInfo(generator=ObjectIdGenerators.PropertyGenerator.class, property="autoid")
//public class UserDMP implements Serializable{
//
// private static final long serialVersionUID = -4467370784003784660L;
//
//
// @Id
// @GeneratedValue
// @GenericGenerator(name = "uuid2", strategy = "uuid2")
// @Column(name = "id", updatable = false, nullable = false, columnDefinition = "BINARY(16)")
// private UUID id;
//
// @Type(type="org.hibernate.type.PostgresUUIDType") //DEPWARN dependency to Hibernate and PostgreSQL
// @Column(name = "user", nullable = false)
// private UUID user;
//
// @Type(type="org.hibernate.type.PostgresUUIDType") //DEPWARN dependency to Hibernate and PostgreSQL
// @Column(name = "dmp", nullable = false)
// private UUID dmp;
//
// @Column(name = "role")
// private Integer role;
//
// public UUID getId() {
// return id;
// }
//
// public void setId(UUID id) {
// this.id = id;
// }
//
// public UUID getUser() {
// return user;
// }
//
// public void setUser(UUID user) {
// this.user = user;
// }
//
// public UUID getDmp() {
// return dmp;
// }
//
// public void setDmp(UUID dmp) {
// this.dmp = dmp;
// }
//
// public Integer getRole() {
// return role;
// }
//
// public void setRole(Integer role) {
// this.role = role;
// }
//
//
//}

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@ -1,7 +1,8 @@
package entities.security;
package entities;
import java.io.Serializable;
import java.util.Date;
import java.util.Set;
import java.util.UUID;
import javax.persistence.Column;
@ -10,6 +11,8 @@ import javax.persistence.FetchType;
import javax.persistence.GeneratedValue;
import javax.persistence.Id;
import javax.persistence.JoinColumn;
import javax.persistence.JoinTable;
import javax.persistence.OneToMany;
import javax.persistence.OneToOne;
import javax.persistence.Table;
import javax.persistence.Temporal;
@ -21,10 +24,12 @@ import org.hibernate.annotations.Type;
import com.fasterxml.jackson.annotation.JsonIdentityInfo;
import com.fasterxml.jackson.annotation.ObjectIdGenerators;
import entities.security.UserAuth;
@Entity
@Table(name="\"UserInfo\"")
@JsonIdentityInfo(generator=ObjectIdGenerators.PropertyGenerator.class, property="autoid")
@JsonIdentityInfo(generator=ObjectIdGenerators.PropertyGenerator.class, property="id")
public class UserInfo implements Serializable{
private static final long serialVersionUID = 1225151430484658395L;
@ -32,13 +37,10 @@ public class UserInfo implements Serializable{
@Id
@GeneratedValue
@GenericGenerator(name = "uuid2", strategy = "uuid2")
@Column(name = "autoid", updatable = false, nullable = false, columnDefinition = "BINARY(16)")
private UUID autoid;
@Column(name = "id", updatable = false, nullable = false, columnDefinition = "BINARY(16)")
private UUID id;
@Column(name = "identification", nullable = false)
private String identification = null;
@Column(name = "email", nullable = false)
private String email = null;
@ -71,12 +73,37 @@ public class UserInfo implements Serializable{
@Column(name = "additionalinfo", columnDefinition = "xml", nullable = true)
private String additionalinfo;
public String getIdentification() {
return identification;
// @OneToMany(fetch = FetchType.EAGER)
// @JoinTable(name="\"UserDMP\"",
// joinColumns={@JoinColumn(name="user", referencedColumnName="\"ID\"")},
// inverseJoinColumns={@JoinColumn(name="dmp", referencedColumnName="\"ID\"")}
// )
// private Set<UserInfo> users;
public UUID getId() {
return id;
}
public void setIdentification(String identification) {
this.identification = identification;
public void setId(UUID id) {
this.id = id;
}
public Date getCreated() {
return created;
}
public void setCreated(Date created) {
this.created = created;
}
public Date getLastloggedin() {
return lastloggedin;
}
public void setLastloggedin(Date lastloggedin) {
this.lastloggedin = lastloggedin;
}
public String getEmail() {

View File

@ -21,10 +21,10 @@ import org.springframework.web.bind.annotation.RestController;
import com.fasterxml.jackson.core.JsonProcessingException;
import com.fasterxml.jackson.databind.ObjectMapper;
import dao.entities.UserInfoDao;
import dao.entities.security.UserAuthDao;
import dao.entities.security.UserInfoDao;
import entities.UserInfo;
import entities.security.UserAuth;
import entities.security.UserInfo;
import security.TokenSessionManager;

View File

@ -1,4 +1,4 @@
package rest.proxy;
package proxy;
import java.io.BufferedReader;
import java.io.IOException;
@ -57,12 +57,12 @@ public class Proxy {
while ((inputLine = in.readLine()) != null)
response.append(inputLine);
in.close();
} else {
return ResponseEntity.status(HttpStatus.OK).body(response.toString());
}
else {
return ResponseEntity.status(HttpStatus.FORBIDDEN).body("{'reason': 'Remote server responded with: "+responseCode+"'}");
}
return ResponseEntity.status(HttpStatus.OK).body(response.toString());
} catch (IOException | URISyntaxException e) {
return ResponseEntity.status(HttpStatus.INTERNAL_SERVER_ERROR).body("{'reason': 'Could not proxy to given host'}");
}

View File

@ -257,6 +257,7 @@ public class Datasets {
try {
return ResponseEntity.status(HttpStatus.CREATED).body(objectMapper.writeValueAsString(createdDatasetProfile));
} catch (JsonProcessingException e) {
e.printStackTrace();
return ResponseEntity.status(HttpStatus.INTERNAL_SERVER_ERROR).body("{\"msg\":\"Could not set dataset profile!\"}");
}

View File

@ -132,6 +132,7 @@ public class Projects {
}
@Transactional
@RequestMapping(method = RequestMethod.POST, value = { "/project/create" }, consumes = "application/json", produces="application/json")
public @ResponseBody ResponseEntity<Object> setProject(@RequestBody Project project) {

View File

@ -96,6 +96,18 @@ public class Researchers {
}
}
@RequestMapping(method = RequestMethod.GET, value = { "/researcher/getByEmail" }, produces="application/json")
public @ResponseBody ResponseEntity<Object> getResearcherByEmail(@RequestParam("email") String email){
try {
Researcher researcher = researcherDao.getResearcherByEmail(email);
return ResponseEntity.status(HttpStatus.OK).body(new ObjectMapper().writeValueAsString(researcher));
}
catch(Exception ex) {
return ResponseEntity.status(HttpStatus.BAD_REQUEST).body("Erroneous input: "+ex.getMessage());
}
}
@RequestMapping(method = RequestMethod.GET, value = { "/researcher/getAll" }, produces="application/json")
public @ResponseBody ResponseEntity<Object> getAllResearchers(){

View File

@ -12,8 +12,8 @@ import org.springframework.security.core.Authentication;
import org.springframework.security.core.AuthenticationException;
import org.springframework.stereotype.Component;
import dao.entities.security.UserInfoDao;
import entities.security.UserInfo;
import dao.entities.UserInfoDao;
import entities.UserInfo;
import exceptions.NonValidTokenException;
import security.validators.GoogleTokenValidator;
import security.validators.NativeTokenValidator;
@ -64,7 +64,6 @@ public class CustomAuthenticationProvider implements AuthenticationProvider {
else
throw new AuthenticationServiceException("Authentication failed");
}
@Override

View File

@ -12,7 +12,7 @@ import com.google.api.client.http.HttpTransport;
import com.google.api.client.http.javanet.NetHttpTransport;
import com.google.api.client.json.jackson2.JacksonFactory;
import entities.security.UserInfo;
import entities.UserInfo;
import exceptions.NonValidTokenException;
public class GoogleTokenValidator implements TokenValidator {

View File

@ -31,7 +31,7 @@
<bean id="nativeTokenValidator" class="security.validators.NativeTokenValidator" />
<bean id="proxy" class="rest.proxy.Proxy">
<bean id="proxy" class="proxy.Proxy">
<constructor-arg type = "String" value = "${proxy.allowed.host}"/>
</bean>
@ -100,7 +100,7 @@
<bean id="registryDao" class="dao.entities.RegistryDaoImpl" />
<bean id="researcherDao" class="dao.entities.ResearcherDaoImpl" />
<bean id="serviceDao" class="dao.entities.ServiceDaoImpl" />
<bean id="userInfoDao" class="dao.entities.security.UserInfoDaoImpl" />
<bean id="userInfoDao" class="dao.entities.UserInfoDaoImpl" />
<bean id="userAuthDao" class="dao.entities.security.UserAuthDaoImpl" />

View File

@ -10,7 +10,7 @@
http://www.springframework.org/schema/beans/spring-beans-4.1.xsd">
<!-- <context:property-placeholder location="classpath*:**/dmp.properties" /> -->
<context:property-placeholder location="classpath*:**/dmp.properties" />
<mvc:resources mapping="resources/**" location="/resources/" />
<mvc:annotation-driven />

View File

@ -0,0 +1,44 @@
<?xml version="1.0" encoding="UTF-8" ?>
<beans xmlns="http://www.springframework.org/schema/beans"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:mvc="http://www.springframework.org/schema/mvc"
xmlns:context="http://www.springframework.org/schema/context"
xsi:schemaLocation="http://www.springframework.org/schema/mvc
http://www.springframework.org/schema/mvc/spring-mvc-4.1.xsd
http://www.springframework.org/schema/context
http://www.springframework.org/schema/context/spring-context-4.1.xsd
http://www.springframework.org/schema/beans
http://www.springframework.org/schema/beans/spring-beans-4.1.xsd">
<context:property-placeholder location="classpath*:**/dmp.properties" />
<mvc:resources mapping="resources/**" location="/resources/" />
<mvc:annotation-driven />
<context:component-scan base-package="proxy" />
<bean id="proxy" class="proxy.Proxy">
<constructor-arg type = "String" value = "${proxy.allowed.host}"/>
</bean>
<bean id="multipartResolver"
class="org.springframework.web.multipart.commons.CommonsMultipartResolver">
<property name="maxUploadSize" value="100000000" />
</bean>
<bean id="jsonConverter"
class="org.springframework.http.converter.json.MappingJackson2HttpMessageConverter">
<property name="prefixJson" value="false" />
<property name="supportedMediaTypes" value="application/json" />
</bean>
<bean
class="org.springframework.web.servlet.mvc.annotation.AnnotationMethodHandlerAdapter">
<property name="messageConverters">
<list>
<ref bean="jsonConverter" />
</list>
</property>
</bean>
</beans>

View File

@ -16,9 +16,7 @@
<mvc:annotation-driven />
<context:component-scan base-package="rest" />
<bean id="proxy" class="rest.proxy.Proxy">
<constructor-arg type = "String" value = "${proxy.allowed.host}"/>
</bean>
<bean
class="org.springframework.web.servlet.view.InternalResourceViewResolver">

View File

@ -3,7 +3,20 @@
<display-name>dmp-backend</display-name>
<servlet>
<servlet-name>dmp-backend-proxy</servlet-name>
<servlet-class>org.springframework.web.servlet.DispatcherServlet</servlet-class>
<load-on-startup>1</load-on-startup>
</servlet>
<servlet-mapping>
<servlet-name>dmp-backend-proxy</servlet-name>
<url-pattern>/proxy/*</url-pattern>
</servlet-mapping>
<listener>
<listener-class>org.springframework.web.context.ContextLoaderListener</listener-class>
</listener>
<servlet>
<servlet-name>dmp-backend-login</servlet-name>
<servlet-class>org.springframework.web.servlet.DispatcherServlet</servlet-class>

View File

@ -25,7 +25,10 @@ drop table if exists "Registry" cascade;
drop table if exists "DatasetService" cascade;
drop table if exists "DatasetRegistry" cascade;
drop table if exists "DatasetDataRepository" cascade;
drop table if exists "UserInfo" cascade;
DROP table if exists "UserDMP" cascade;
DROP table if exists "UserInfo" cascade;
DROP table if exists "UserAuth" cascade;
-- CREATE EXTENSION IF NOT EXISTS plpgsql WITH SCHEMA pg_catalog;
@ -447,12 +450,13 @@ ALTER TABLE ONLY "DatasetService"
ADD CONSTRAINT "DatasetServiceServiceReference" FOREIGN KEY ("Service") REFERENCES "Service"("ID");
DROP table if exists "UserDMP";
DROP table if exists "UserInfo";
DROP table if exists "UserAuth";
CREATE TABLE "UserInfo" (
"autoid" uuid DEFAULT uuid_generate_v4() NOT NULL,
"identification" character varying(500) NOT NULL,
"email" character varying(250) NOT NULL,
"id" uuid DEFAULT uuid_generate_v4() UNIQUE NOT NULL,
"email" character varying(250) UNIQUE NOT NULL,
"authorization_level" smallint NOT NULL,
"usertype" smallint NOT NULL,
"authentication" uuid,
@ -461,15 +465,13 @@ CREATE TABLE "UserInfo" (
"created" timestamp,
"lastloggedin" timestamp,
"additionalinfo" xml,
PRIMARY KEY (identification, email)
PRIMARY KEY (id)
);
COMMENT ON COLUMN "UserInfo"."authorization_level" IS 'This stores the authorization level of the user: 0 admin, 1 user, being able to be extended furthermore';
COMMENT ON COLUMN "UserInfo"."usertype" IS 'This stores the type of user: 0 -> internal, 1 external';
DROP table if exists "UserAuth";
CREATE TABLE "UserAuth" (
"id" uuid DEFAULT uuid_generate_v4() NOT NULL UNIQUE,
"username" character varying(200) NOT NULL,
@ -483,8 +485,21 @@ ALTER TABLE "UserInfo" ADD CONSTRAINT fkey_userinfo_userauth FOREIGN KEY ("authe
COMMENT ON COLUMN "UserAuth"."password" IS 'This field stores a password hash';
create table "UserDMP" (
"id" uuid DEFAULT uuid_generate_v4() NOT NULL,
"user" uuid NOT NULL,
"dmp" uuid NOT NUll,
"role" integer
);
ALTER TABLE "UserDMP" ADD CONSTRAINT fkey_userdmp_user FOREIGN KEY ("user") REFERENCES "UserInfo"("id");
ALTER TABLE "UserDMP" ADD CONSTRAINT fkey_userdmp_dmp FOREIGN KEY ("dmp") REFERENCES "DMP"("ID");
ALTER TABLE "UserInfo" OWNER TO dmptool;
ALTER TABLE "UserAuth" OWNER TO dmptool;
ALTER TABLE "UserDMP" OWNER TO dmptool;

View File

@ -7,6 +7,7 @@ import { RouterModule, Routes, Router } from '@angular/router';
import {DataTableModule } from 'angular-2-data-table';
import { AppComponent } from './app.component';
import { RestBase } from './services/rest-base';
import { DynamicFormComponent } from './form/dynamic-form.component';
import { DynamicFormFieldComponent } from './form/fields/dynamic-form-field.component';
import { ServerService } from './services/server.service';
@ -22,6 +23,7 @@ import { PageNotFoundComponent } from './not-found.component';
import { TocComponent } from './form/tableOfContents/toc.component';
import { ProjectsModule } from './projects/project.module';
import { PaginationService } from './services/pagination.service';
import { EestoreService } from './services/eestore.service';
@NgModule({
declarations: [
@ -45,7 +47,7 @@ import { PaginationService } from './services/pagination.service';
DataTableModule
],
providers: [ServerService, dataModelBuilder, AuthGuard, PaginationService, TokenService, LocalStorageService],
providers: [ServerService, dataModelBuilder, AuthGuard, PaginationService, TokenService, LocalStorageService, RestBase, EestoreService],
bootstrap: [AppComponent]
})
export class AppModule {

View File

@ -53,6 +53,7 @@ export class DynamicFormComponent implements OnInit {
this.serverService.getData().subscribe(
response => {
console.log("response");
@ -60,6 +61,12 @@ export class DynamicFormComponent implements OnInit {
const data = response;
console.log("data.dataset--BEFORE")
console.log(response.dataset.profile.definition)
console.log(response.dataset.profile.ruleset.definition)
console.log(response.dataset.profile.viewstyle.definition)
//replace the xmls {model,view,rule} definitions with json -- https://github.com/abdmob/x2js library
data.dataset.profile.definition = this.xml2jsonOBJ.xml_str2json(data.dataset.profile.definition);
data.dataset.profile.ruleset.definition = this.xml2jsonOBJ.xml_str2json(data.dataset.profile.ruleset.definition);
@ -67,6 +74,12 @@ export class DynamicFormComponent implements OnInit {
//can be converted back to xml (which shouldn't be needed) with this.xml2jsonOBJ.json2xml_str
console.log("this.serverService.getFields");
console.log("data.dataset")
console.log(data.dataset.profile.definition)
console.log(data.dataset.profile.ruleset.definition)
console.log(data.dataset.profile.viewstyle.definition)
this.dataModel = new DataModel();
this.dataModel = this.dataModelService.getDataModel(data);

View File

@ -0,0 +1,61 @@
import { Component, Input, OnInit, AfterViewChecked, ViewChild, Injectable } from '@angular/core';
import {RestBase} from './rest-base';
@Injectable()
export class EestoreService implements OnInit {
base: string = "https://eestore.paas2.uninett.no/api/";
datarepo: string = this.base+"datarepo/";
projectrepo: string = this.base+"projectrepo/";
organizationrepo: string = this.base+"organizationrepo/";
metadataschemarepo: string = this.base+"metadataschemarepo/";
servicerepo: string = this.base+"servicerepo/";
personrepo: string = this.base+"personrepo/";
config: string = this.base+"config/";
configtags: string = this.base+"configtags/";
constructor(public restBase: RestBase) {
}
ngOnInit(){
}
getDataRepos(){
return this.restBase.proxy_get(this.datarepo);
}
getProjectRepos(){
return this.restBase.proxy_get(this.projectrepo);
}
getOrganizationRepos(){
return this.restBase.proxy_get(this.organizationrepo);
}
getMetadataSchemaRepos(){
return this.restBase.proxy_get(this.metadataschemarepo);
}
getServiceRepos(){
return this.restBase.proxy_get(this.servicerepo);
}
getPersonRepos(){
return this.restBase.proxy_get(this.personrepo);
}
getConfigs(){
return this.restBase.proxy_get(this.config);
}
getConfigTags(){
return this.restBase.proxy_get(this.configtags);
}
}

View File

@ -0,0 +1,69 @@
import { HttpClient , HttpHeaders, HttpParams } from '@angular/common/http';
import { TokenService, TokenProvider } from './token.service'
import 'rxjs/Rx';
declare var X2JS: any;
export class RestBase {
xml2jsonOBJ: any;
static get parameters() { return [HttpClient, TokenService] }
constructor(public http : HttpClient, public tokenService : TokenService) {
this.xml2jsonOBJ = new X2JS();
}
protocol: string = "http";
hostname: string = "localhost";//"dl010.madgik.di.uoa.gr";//
port: number = 7070;//8080;//
webappname: string = "dmp-backend";//"dmp-backend-new";//
proxyPath : string = this.protocol+"://"+this.hostname+":"+this.port+"/"+this.webappname+"/proxy/";
loginPath : string = this.protocol+"://"+this.hostname+":"+this.port+"/"+this.webappname+"/login/";
restPath: string = this.protocol+"://"+this.hostname+":"+this.port+"/"+this.webappname+"/rest/";
public proxy_get(path : string){
var options = this.createOptions();
return this.http.get<any>(this.proxyPath +"proxy?url="+ path, options);
}
public login(path : string, data : any){
let options = { headers: new HttpHeaders().set('Content-Type', 'application/json') };
return this.http.post<any>(this.loginPath + path, JSON.stringify(data), options);
}
public get(path : string){
var options = this.createOptions();
return this.http.get<any>(this.restPath + path, options);
}
public post(path : string, data : any) {
var options = this.createOptions();
return this.http.post<any>(this.restPath + path, JSON.stringify(data), options);
}
private createOptions(){
var token = this.tokenService.getToken();
var provider: TokenProvider = this.tokenService.getProvider();
//var csrfToken : string = this.tokenService.getCSRFToken();
const params = new HttpParams();
var headers;
if(provider == TokenProvider.google)
headers = new HttpHeaders().set('Content-Type', 'application/json').set("google-token", token);
if(provider == TokenProvider.native)
headers = new HttpHeaders().set('Content-Type', 'application/json').set("native-token", token);
let options = { params: params, headers: headers };
return options;
}
}

View File

@ -11,11 +11,11 @@ export class TokenService {
constructor (private storage : LocalStorageService, @Inject(DOCUMENT) private document) {
var csrfToken : string = jQuery(document).find('meta[name="csrf-token"]').attr('content');
this.setCSRFToken(csrfToken);
//var csrfToken : string = jQuery(document).find('meta[name="csrf-token"]').attr('content');
//this.setCSRFToken(csrfToken);
}
/*
getCSRFToken() : string{
return this.storage.retrieve('csrf-token');
}
@ -23,7 +23,7 @@ export class TokenService {
setCSRFToken(csrfToken : string){
this.storage.store('csrf-token',csrfToken);
}
*/
getProvider() : TokenProvider {
return this.storage.retrieve('provider');