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Merge branch 'dmp-refactoring' of https://code-repo.d4science.org/MaDgiK-CITE/argos into dmp-refactoring 

# Conflicts:
#	dmp-frontend/src/assets/i18n/en.json
This commit is contained in:
Sofia Papacharalampous 2024-03-13 09:47:38 +02:00
parent f754dbe661 a45dec7a5f
commit e7cb7f44d3
156 changed files with 1934 additions and 1166 deletions
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5
annotation-service/annotation-web/src/main/resources/config/queue.yml
View File

@ -42,9 +42,10 @@ queue:
options:
exchange: null
tenant-removal-topic: tenant.remove
tenant-touched-topic: tenant.touch
tenant-touch-topic: tenant.touch
user-removal-topic: user.remove
user-touched-topic: user.touch
user-touch-topic: user.touch
annotation-entity-touch-topic: annotation.entity.touch
rabbitmq:
enable: false
interval-seconds: 30

5
annotation-service/annotation/src/main/java/gr/cite/annotation/audit/AuditableAction.java
View File

@ -51,4 +51,9 @@ public class AuditableAction {
public static final EventId Annotation_Persist = new EventId(24002, "Annotation_Persist");
public static final EventId Annotation_Delete = new EventId(24003, "Annotation_Delete");
public static final EventId Entity_User_Query = new EventId(25000, "Entity_User_Query");
public static final EventId Entity_User_Lookup = new EventId(25001, "Entity_User_Lookup");
public static final EventId Entity_User_Persist = new EventId(25002, "Entity_User_Persist");
public static final EventId Entity_User_Delete = new EventId(25003, "Entity_User_Delete");
}

43
annotation-service/annotation/src/main/java/gr/cite/annotation/common/validation/UuidValidator.java Normal file
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@ -0,0 +1,43 @@
package gr.cite.annotation.common.validation;
import gr.cite.annotation.convention.ConventionService;
import gr.cite.annotation.errorcode.ErrorThesaurusProperties;
import gr.cite.annotation.integrationevent.inbox.annotationentitytouch.AnnotationEntityTouchedIntegrationEvent;
import gr.cite.tools.validation.specification.Specification;
import org.springframework.beans.factory.config.ConfigurableBeanFactory;
import org.springframework.context.MessageSource;
import org.springframework.context.annotation.Scope;
import org.springframework.context.i18n.LocaleContextHolder;
import org.springframework.stereotype.Component;
import java.util.Arrays;
import java.util.List;
import java.util.UUID;
@Component(UuidValidator.ValidatorName)
@Scope(ConfigurableBeanFactory.SCOPE_PROTOTYPE)
public class UuidValidator extends BaseValidator<UUID> {
public static final String ValidatorName = "UuidValidator";
private final MessageSource messageSource;
protected UuidValidator(ConventionService conventionService, ErrorThesaurusProperties errors, MessageSource messageSource) {
super(conventionService, errors);
this.messageSource = messageSource;
}
@Override
protected Class<UUID> modelClass() {
return UUID.class;
}
@Override
protected List<Specification> specifications(UUID item) {
return Arrays.asList(
this.spec()
.must(() -> this.isValidGuid(item))
.failOn("uuid").failWith(messageSource.getMessage("Validation_Required", new Object[]{"uuid"}, LocaleContextHolder.getLocale()))
);
}
}

1
annotation-service/annotation/src/main/java/gr/cite/annotation/data/AnnotationEntity.java
View File

@ -19,7 +19,6 @@ public class AnnotationEntity {
public static final String _id = "id";
@Id
@Column(name = "entity_id", columnDefinition = "uuid", nullable = false)
private UUID entityId;

8
annotation-service/annotation/src/main/java/gr/cite/annotation/data/EntityUserEntity.java
View File

@ -12,19 +12,17 @@ import java.util.UUID;
public class EntityUserEntity {
@Id
@Column(name = "id", columnDefinition = "uuid", updatable = false, nullable = false)
@Column(name = "\"id\"", columnDefinition = "uuid", updatable = false, nullable = false)
private UUID id;
public static final String _id = "id";
@Id
@Column(name = "id", columnDefinition = "uuid", nullable = false)
@Column(name = "\"entity_id\"", columnDefinition = "uuid", nullable = false)
private UUID entityId;
public static final String _entityId = "entityId";
@Id
@Column(name = "id", columnDefinition = "uuid", nullable = false)
@Column(name = "\"user_id\"", columnDefinition = "uuid", nullable = false)
private UUID userId;
public static final String _userId = "userId";

5
annotation-service/annotation/src/main/java/gr/cite/annotation/integrationevent/AppRabbitConfigurer.java
View File

@ -33,9 +33,10 @@ public class AppRabbitConfigurer extends RabbitConfigurer {
public InboxBindings inboxBindingsCreator() {
List<String> bindingItems = new ArrayList<>();
bindingItems.addAll(this.inboxProperties.getTenantRemovalTopic());
bindingItems.addAll(this.inboxProperties.getTenantTouchedTopic());
bindingItems.addAll(this.inboxProperties.getTenantTouchTopic());
bindingItems.addAll(this.inboxProperties.getUserRemovalTopic());
bindingItems.addAll(this.inboxProperties.getUserTouchedTopic());
bindingItems.addAll(this.inboxProperties.getUserTouchTopic());
bindingItems.addAll(this.inboxProperties.getAnnotationEntityTouchTopic());
return new InboxBindings(bindingItems);
}

28
annotation-service/annotation/src/main/java/gr/cite/annotation/integrationevent/inbox/InboxProperties.java
View File

@ -11,39 +11,47 @@ public class InboxProperties {
private final List<String> tenantRemovalTopic;
private final List<String> tenantTouchedTopic;
private final List<String> tenantTouchTopic;
private final List<String> userRemovalTopic;
private final List<String> userTouchedTopic;
private final List<String> userTouchTopic;
private final List<String> annotationEntityTouchTopic;
public InboxProperties(
String exchange,
List<String> tenantRemovalTopic,
List<String> tenantTouchedTopic,
List<String> tenantTouchTopic,
List<String> userRemovalTopic,
List<String> userTouchedTopic) {
List<String> userTouchTopic,
List<String> annotationEntityTouchTopic) {
this.exchange = exchange;
this.tenantRemovalTopic = tenantRemovalTopic;
this.tenantTouchedTopic = tenantTouchedTopic;
this.tenantTouchTopic = tenantTouchTopic;
this.userRemovalTopic = userRemovalTopic;
this.userTouchedTopic = userTouchedTopic;
this.userTouchTopic = userTouchTopic;
this.annotationEntityTouchTopic = annotationEntityTouchTopic;
}
public List<String> getTenantRemovalTopic() {
return tenantRemovalTopic;
}
public List<String> getTenantTouchedTopic() {
return tenantTouchedTopic;
public List<String> getTenantTouchTopic() {
return tenantTouchTopic;
}
public List<String> getUserRemovalTopic() {
return userRemovalTopic;
}
public List<String> getUserTouchedTopic() {
return userTouchedTopic;
public List<String> getUserTouchTopic() {
return userTouchTopic;
}
public List<String> getAnnotationEntityTouchTopic() {
return annotationEntityTouchTopic;
}
public String getExchange() {

11
annotation-service/annotation/src/main/java/gr/cite/annotation/integrationevent/inbox/InboxRepositoryImpl.java
View File

@ -5,10 +5,11 @@ import gr.cite.annotation.common.enums.IsActive;
import gr.cite.annotation.common.scope.fake.FakeRequestScope;
import gr.cite.annotation.data.QueueInboxEntity;
import gr.cite.annotation.integrationevent.TrackedEvent;
import gr.cite.annotation.integrationevent.inbox.annotationentitytouch.AnnotationEntityTouchedIntegrationEventHandler;
import gr.cite.annotation.integrationevent.inbox.tenantremoval.TenantRemovalIntegrationEventHandler;
import gr.cite.annotation.integrationevent.inbox.tenanttouched.TenantTouchedIntegrationEventHandler;
import gr.cite.annotation.integrationevent.inbox.tenanttouch.TenantTouchedIntegrationEventHandler;
import gr.cite.annotation.integrationevent.inbox.userremoval.UserRemovalIntegrationEventHandler;
import gr.cite.annotation.integrationevent.inbox.usertouched.UserTouchedIntegrationEventHandler;
import gr.cite.annotation.integrationevent.inbox.usertouch.UserTouchedIntegrationEventHandler;
import gr.cite.annotation.query.QueueInboxQuery;
import gr.cite.queueinbox.entity.QueueInbox;
import gr.cite.queueinbox.entity.QueueInboxStatus;
@ -325,12 +326,14 @@ public class InboxRepositoryImpl implements InboxRepository {
logger.debug("Processing message with routing key '{}'", routingKey);
if (this.routingKeyMatched(routingKey, this.inboxProperties.getTenantRemovalTopic()))
handler = this.applicationContext.getBean(TenantRemovalIntegrationEventHandler.class);
else if (this.routingKeyMatched(routingKey, this.inboxProperties.getTenantTouchedTopic()))
else if (this.routingKeyMatched(routingKey, this.inboxProperties.getTenantTouchTopic()))
handler = this.applicationContext.getBean(TenantTouchedIntegrationEventHandler.class);
else if (this.routingKeyMatched(routingKey, this.inboxProperties.getUserRemovalTopic()))
handler = this.applicationContext.getBean(UserRemovalIntegrationEventHandler.class);
else if (this.routingKeyMatched(routingKey, this.inboxProperties.getUserTouchedTopic()))
else if (this.routingKeyMatched(routingKey, this.inboxProperties.getUserTouchTopic()))
handler = this.applicationContext.getBean(UserTouchedIntegrationEventHandler.class);
else if (this.routingKeyMatched(routingKey, this.inboxProperties.getAnnotationEntityTouchTopic()))
handler = this.applicationContext.getBean(AnnotationEntityTouchedIntegrationEventHandler.class);
else {
logger.error("No handler found for message routing key '{}'. Discarding.", routingKey);
handler = null;

86
annotation-service/annotation/src/main/java/gr/cite/annotation/integrationevent/inbox/annotationentitytouch/AnnotationEntityTouchedIntegrationEvent.java Normal file
View File

@ -0,0 +1,86 @@
package gr.cite.annotation.integrationevent.inbox.annotationentitytouch;
import gr.cite.annotation.common.validation.BaseValidator;
import gr.cite.annotation.common.validation.UuidValidator;
import gr.cite.annotation.convention.ConventionService;
import gr.cite.annotation.errorcode.ErrorThesaurusProperties;
import gr.cite.annotation.integrationevent.TrackedEvent;
import gr.cite.tools.validation.ValidatorFactory;
import gr.cite.tools.validation.specification.Specification;
import org.springframework.beans.factory.config.ConfigurableBeanFactory;
import org.springframework.context.MessageSource;
import org.springframework.context.annotation.Scope;
import org.springframework.context.i18n.LocaleContextHolder;
import org.springframework.stereotype.Component;
import java.util.Arrays;
import java.util.List;
import java.util.UUID;
public class AnnotationEntityTouchedIntegrationEvent extends TrackedEvent {
private UUID entityId;
public static final String _entityId = "entityId";
private List<UUID> userIds;
public static final String _userIds = "userIds";
public UUID getEntityId() {
return entityId;
}
public void setEntityId(UUID entityId) {
this.entityId = entityId;
}
public List<UUID> getUserIds() {
return userIds;
}
public void setUserIds(List<UUID> userIds) {
this.userIds = userIds;
}
@Component(AnnotationEntityTouchedIntegrationEvent.AnnotationEntityTouchedIntegrationEventValidator.ValidatorName)
@Scope(ConfigurableBeanFactory.SCOPE_PROTOTYPE)
public static class AnnotationEntityTouchedIntegrationEventValidator extends BaseValidator<AnnotationEntityTouchedIntegrationEvent> {
public static final String ValidatorName = "AnnotationEntityTouchedIntegrationEventValidator";
private final MessageSource messageSource;
private final ValidatorFactory validatorFactory;
protected AnnotationEntityTouchedIntegrationEventValidator(ConventionService conventionService, ErrorThesaurusProperties errors, MessageSource messageSource, ValidatorFactory validatorFactory) {
super(conventionService, errors);
this.messageSource = messageSource;
this.validatorFactory = validatorFactory;
}
@Override
protected Class<AnnotationEntityTouchedIntegrationEvent> modelClass() {
return AnnotationEntityTouchedIntegrationEvent.class;
}
@Override
protected List<Specification> specifications(AnnotationEntityTouchedIntegrationEvent item) {
return Arrays.asList(
this.spec()
.iff(() -> !this.isNull(item.getEntityId()))
.must(() -> this.isValidGuid(item.getEntityId()))
.failOn(AnnotationEntityTouchedIntegrationEvent._entityId).failWith(messageSource.getMessage("Validation_Required", new Object[]{AnnotationEntityTouchedIntegrationEvent._entityId}, LocaleContextHolder.getLocale())),
this.spec()
.must(() -> !this.isListNullOrEmpty(item.getUserIds()))
.failOn(AnnotationEntityTouchedIntegrationEvent._userIds).failWith(messageSource.getMessage("Validation_Required", new Object[]{AnnotationEntityTouchedIntegrationEvent._userIds}, LocaleContextHolder.getLocale())),
this.navSpec()
.iff(() -> !this.isListNullOrEmpty(item.getUserIds()))
.on(AnnotationEntityTouchedIntegrationEvent._userIds)
.over(item.getUserIds())
.using((i) -> this.validatorFactory.validator(UuidValidator.class))
);
}
}
}

7
annotation-service/annotation/src/main/java/gr/cite/annotation/integrationevent/inbox/annotationentitytouch/AnnotationEntityTouchedIntegrationEventHandler.java Normal file
View File

@ -0,0 +1,7 @@
package gr.cite.annotation.integrationevent.inbox.annotationentitytouch;
import gr.cite.annotation.integrationevent.inbox.IntegrationEventHandler;
public interface AnnotationEntityTouchedIntegrationEventHandler extends IntegrationEventHandler {
}

149
annotation-service/annotation/src/main/java/gr/cite/annotation/integrationevent/inbox/annotationentitytouch/AnnotationEntityTouchedIntegrationEventHandlerImpl.java Normal file
View File

@ -0,0 +1,149 @@
package gr.cite.annotation.integrationevent.inbox.annotationentitytouch;
import gr.cite.annotation.audit.AuditableAction;
import gr.cite.annotation.common.JsonHandlingService;
import gr.cite.annotation.common.enums.IsActive;
import gr.cite.annotation.common.scope.fake.FakeRequestScope;
import gr.cite.annotation.data.EntityUserEntity;
import gr.cite.annotation.integrationevent.inbox.EventProcessingStatus;
import gr.cite.annotation.integrationevent.inbox.InboxPrincipal;
import gr.cite.annotation.integrationevent.inbox.IntegrationEventProperties;
import gr.cite.annotation.query.EntityUserQuery;
import gr.cite.commons.web.oidc.principal.CurrentPrincipalResolver;
import gr.cite.tools.auditing.AuditService;
import gr.cite.tools.data.query.QueryFactory;
import gr.cite.tools.logging.LoggerService;
import gr.cite.tools.validation.ValidatorFactory;
import jakarta.persistence.EntityManager;
import jakarta.persistence.EntityManagerFactory;
import jakarta.persistence.EntityTransaction;
import jakarta.persistence.OptimisticLockException;
import org.slf4j.LoggerFactory;
import org.springframework.beans.factory.config.ConfigurableBeanFactory;
import org.springframework.context.ApplicationContext;
import org.springframework.context.annotation.Scope;
import org.springframework.stereotype.Component;
import java.time.Instant;
import java.util.AbstractMap;
import java.util.List;
import java.util.Map;
import java.util.UUID;
@Component
@Scope(value = ConfigurableBeanFactory.SCOPE_PROTOTYPE)
public class AnnotationEntityTouchedIntegrationEventHandlerImpl implements AnnotationEntityTouchedIntegrationEventHandler {
private static final LoggerService logger = new LoggerService(LoggerFactory.getLogger(AnnotationEntityTouchedIntegrationEventHandlerImpl.class));
private final JsonHandlingService jsonHandlingService;
private final ValidatorFactory validatorFactory;
private final ApplicationContext applicationContext;
private final QueryFactory queryFactory;
public AnnotationEntityTouchedIntegrationEventHandlerImpl(JsonHandlingService jsonHandlingService, ValidatorFactory validatorFactory, ApplicationContext applicationContext, QueryFactory queryFactory) {
this.jsonHandlingService = jsonHandlingService;
this.validatorFactory = validatorFactory;
this.applicationContext = applicationContext;
this.queryFactory = queryFactory;
}
@Override
public EventProcessingStatus handle(IntegrationEventProperties properties, String message) {
AnnotationEntityTouchedIntegrationEvent event = this.jsonHandlingService.fromJsonSafe(AnnotationEntityTouchedIntegrationEvent.class, message);
if (event == null)
return EventProcessingStatus.Error;
logger.debug("Handling {}", AnnotationEntityTouchedIntegrationEvent.class.getSimpleName());
this.validatorFactory.validator(AnnotationEntityTouchedIntegrationEvent.AnnotationEntityTouchedIntegrationEventValidator.class).validateForce(event);
EntityManager entityManager = null;
EntityTransaction transaction = null;
try (FakeRequestScope ignored = new FakeRequestScope()) {
try {
// QueryFactory queryFactory = this.applicationContext.getBean(QueryFactory.class);
// TenantScope scope = this.applicationContext.getBean(TenantScope.class);
// if (scope.isMultitenant() && event.getTenant() != null) {
// TenantEntity tenant = queryFactory.query(TenantQuery.class).ids(event.getTenant()).firstAs(new BaseFieldSet().ensure(Tenant._id).ensure(Tenant._code));
// if (tenant == null) {
// logger.error("missing tenant from event message");
// return EventProcessingStatus.Error;
// }
// scope.setTenant(event.getTenant(), tenant.getCode());
// } else if (scope.isMultitenant()) {
// logger.error("missing tenant from event message");
// return EventProcessingStatus.Error;
// }
//
// ValidationService validator = this.applicationContext.getBean(ValidationService.class);
// validator.validateForce(model);
CurrentPrincipalResolver currentPrincipalResolver = this.applicationContext.getBean(CurrentPrincipalResolver.class);
currentPrincipalResolver.push(InboxPrincipal.build(properties));
EntityManagerFactory entityManagerFactory = this.applicationContext.getBean(EntityManagerFactory.class);
entityManager = entityManagerFactory.createEntityManager();
transaction = entityManager.getTransaction();
transaction.begin();
try {
EntityUserQuery entityUserQuery = this.queryFactory.query(EntityUserQuery.class);
List<EntityUserEntity> associatedUsersEntities = entityUserQuery
.entityIds(event.getEntityId())
.isActive(IsActive.Active)
.collect();
List<UUID> associatedUsers = associatedUsersEntities.stream()
.map(EntityUserEntity::getUserId)
.toList();
for (UUID user : event.getUserIds()) {
if (!associatedUsers.contains(user)) {
EntityUserEntity entityUserEntity = new EntityUserEntity();
entityUserEntity.setId(UUID.randomUUID());
entityUserEntity.setEntityId(event.getEntityId());
entityUserEntity.setUserId(user);
entityUserEntity.setCreatedAt(Instant.now());
entityUserEntity.setUpdatedAt(Instant.now());
entityUserEntity.setIsActive(IsActive.Active);
entityManager.persist(entityUserEntity);
}
}
AuditService auditService = this.applicationContext.getBean(AuditService.class);
auditService.track(AuditableAction.User_Persist, Map.ofEntries(
new AbstractMap.SimpleEntry<String, Object>("model", event)
));
transaction.commit();
} catch (Exception e) {
transaction.rollback();
throw e;
} finally {
currentPrincipalResolver.pop();
}
} catch (OptimisticLockException ex) {
// we get this if/when someone else already modified the notifications. We want to essentially ignore this, and keep working
logger.debug("Concurrency exception getting queue outbox. Skipping: {} ", ex.getMessage());
if (transaction != null)
transaction.rollback();
} catch (Exception ex) {
logger.error("Problem getting list of queue outbox. Skipping: {}", ex.getMessage(), ex);
if (transaction != null)
transaction.rollback();
} finally {
if (entityManager != null)
entityManager.close();
}
} catch (Exception ex) {
logger.error("Problem getting list of queue outbox. Skipping: {}", ex.getMessage(), ex);
}
return EventProcessingStatus.Success;
}
}

2
annotation-service/annotation/src/main/java/gr/cite/annotation/integrationevent/inbox/tenanttouched/TenantTouchedIntegrationEvent.java → annotation-service/annotation/src/main/java/gr/cite/annotation/integrationevent/inbox/tenanttouch/TenantTouchedIntegrationEvent.java
View File

@ -1,4 +1,4 @@
package gr.cite.annotation.integrationevent.inbox.tenanttouched;
package gr.cite.annotation.integrationevent.inbox.tenanttouch;
import gr.cite.annotation.integrationevent.TrackedEvent;

2
annotation-service/annotation/src/main/java/gr/cite/annotation/integrationevent/inbox/tenanttouched/TenantTouchedIntegrationEventHandler.java → annotation-service/annotation/src/main/java/gr/cite/annotation/integrationevent/inbox/tenanttouch/TenantTouchedIntegrationEventHandler.java
View File

@ -1,4 +1,4 @@
package gr.cite.annotation.integrationevent.inbox.tenanttouched;
package gr.cite.annotation.integrationevent.inbox.tenanttouch;
import gr.cite.annotation.integrationevent.inbox.IntegrationEventHandler;

2
annotation-service/annotation/src/main/java/gr/cite/annotation/integrationevent/inbox/tenanttouched/TenantTouchedIntegrationEventHandlerImpl.java → annotation-service/annotation/src/main/java/gr/cite/annotation/integrationevent/inbox/tenanttouch/TenantTouchedIntegrationEventHandlerImpl.java
View File

@ -1,4 +1,4 @@
package gr.cite.annotation.integrationevent.inbox.tenanttouched;
package gr.cite.annotation.integrationevent.inbox.tenanttouch;
import gr.cite.commons.web.oidc.principal.CurrentPrincipalResolver;
import gr.cite.annotation.audit.AuditableAction;

2
annotation-service/annotation/src/main/java/gr/cite/annotation/integrationevent/inbox/usertouched/UserTouchedIntegrationEvent.java → annotation-service/annotation/src/main/java/gr/cite/annotation/integrationevent/inbox/usertouch/UserTouchedIntegrationEvent.java
View File

@ -1,4 +1,4 @@
package gr.cite.annotation.integrationevent.inbox.usertouched;
package gr.cite.annotation.integrationevent.inbox.usertouch;
import gr.cite.annotation.common.enums.ContactInfoType;
import gr.cite.annotation.common.validation.BaseValidator;

2
annotation-service/annotation/src/main/java/gr/cite/annotation/integrationevent/inbox/usertouched/UserTouchedIntegrationEventHandler.java → annotation-service/annotation/src/main/java/gr/cite/annotation/integrationevent/inbox/usertouch/UserTouchedIntegrationEventHandler.java
View File

@ -1,4 +1,4 @@
package gr.cite.annotation.integrationevent.inbox.usertouched;
package gr.cite.annotation.integrationevent.inbox.usertouch;
import gr.cite.annotation.integrationevent.inbox.IntegrationEventHandler;

2
annotation-service/annotation/src/main/java/gr/cite/annotation/integrationevent/inbox/usertouched/UserTouchedIntegrationEventHandlerImpl.java → annotation-service/annotation/src/main/java/gr/cite/annotation/integrationevent/inbox/usertouch/UserTouchedIntegrationEventHandlerImpl.java
View File

@ -1,4 +1,4 @@
package gr.cite.annotation.integrationevent.inbox.usertouched;
package gr.cite.annotation.integrationevent.inbox.usertouch;
import gr.cite.commons.web.oidc.principal.CurrentPrincipalResolver;
import gr.cite.annotation.audit.AuditableAction;

2
annotation-service/annotation/src/main/java/gr/cite/annotation/model/persist/UserTouchedIntegrationEventPersist.java
View File

@ -3,7 +3,7 @@ package gr.cite.annotation.model.persist;
import gr.cite.annotation.common.validation.BaseValidator;
import gr.cite.annotation.convention.ConventionService;
import gr.cite.annotation.errorcode.ErrorThesaurusProperties;
import gr.cite.annotation.integrationevent.inbox.usertouched.UserTouchedIntegrationEvent;
import gr.cite.annotation.integrationevent.inbox.usertouch.UserTouchedIntegrationEvent;
import gr.cite.tools.validation.specification.Specification;
import org.springframework.beans.factory.config.ConfigurableBeanFactory;
import org.springframework.context.MessageSource;

146
annotation-service/annotation/src/main/java/gr/cite/annotation/query/EntityUserQuery.java Normal file
View File

@ -0,0 +1,146 @@
package gr.cite.annotation.query;
import gr.cite.annotation.authorization.AuthorizationFlags;
import gr.cite.annotation.common.enums.IsActive;
import gr.cite.annotation.data.EntityUserEntity;
import gr.cite.tools.data.query.FieldResolver;
import gr.cite.tools.data.query.QueryBase;
import gr.cite.tools.data.query.QueryContext;
import jakarta.persistence.Tuple;
import jakarta.persistence.criteria.CriteriaBuilder;
import jakarta.persistence.criteria.Predicate;
import org.springframework.stereotype.Component;
import org.springframework.web.context.annotation.RequestScope;
import java.util.*;
@Component
@RequestScope
public class EntityUserQuery extends QueryBase<EntityUserEntity> {
private Collection<UUID> ids, entityIds, userIds;
private Collection<IsActive> isActives;
private EnumSet<AuthorizationFlags> authorize = EnumSet.of(AuthorizationFlags.None);
public EntityUserQuery ids(UUID value) {
this.ids = List.of(value);
return this;
}
public EntityUserQuery ids(UUID... value) {
this.ids = Arrays.asList(value);
return this;
}
public EntityUserQuery ids(Collection<UUID> values) {
this.ids = values;
return this;
}
public EntityUserQuery entityIds(UUID value) {
this.entityIds = List.of(value);
return this;
}
public EntityUserQuery entityIds(UUID... value) {
this.entityIds = Arrays.asList(value);
return this;
}
public EntityUserQuery entityIds(Collection<UUID> values) {
this.entityIds = values;
return this;
}
public EntityUserQuery userIds(UUID value) {
this.userIds = List.of(value);
return this;
}
public EntityUserQuery userIds(UUID... value) {
this.userIds = Arrays.asList(value);
return this;
}
public EntityUserQuery userIds(Collection<UUID> values) {
this.userIds = values;
return this;
}
public EntityUserQuery isActive(IsActive value) {
this.isActives = List.of(value);
return this;
}
public EntityUserQuery isActive(IsActive... value) {
this.isActives = Arrays.asList(value);
return this;
}
public EntityUserQuery isActive(Collection<IsActive> values) {
this.isActives = values;
return this;
}
public EntityUserQuery authorize(EnumSet<AuthorizationFlags> values) {
this.authorize = values;
return this;
}
@Override
protected Boolean isFalseQuery() {
return false;
}
@Override
protected Class<EntityUserEntity> entityClass() {
return EntityUserEntity.class;
}
@Override
protected <X, Y> Predicate applyFilters(QueryContext<X, Y> queryContext) {
List<Predicate> predicates = new ArrayList<>();
if (this.ids != null) {
CriteriaBuilder.In<UUID> inClause = queryContext.CriteriaBuilder.in(queryContext.Root.get(EntityUserEntity._id));
for (UUID item : this.ids)
inClause.value(item);
predicates.add(inClause);
}
if (this.entityIds != null) {
CriteriaBuilder.In<UUID> inClause = queryContext.CriteriaBuilder.in(queryContext.Root.get(EntityUserEntity._entityId));
for (UUID item : this.entityIds)
inClause.value(item);
predicates.add(inClause);
}
if (this.userIds != null) {
CriteriaBuilder.In<UUID> inClause = queryContext.CriteriaBuilder.in(queryContext.Root.get(EntityUserEntity._userId));
for (UUID item : this.userIds)
inClause.value(item);
predicates.add(inClause);
}
if (this.isActives != null) {
CriteriaBuilder.In<IsActive> inClause = queryContext.CriteriaBuilder.in(queryContext.Root.get(EntityUserEntity._isActive));
for (IsActive item : this.isActives)
inClause.value(item);
predicates.add(inClause);
}
if (!predicates.isEmpty()) {
Predicate[] predicatesArray = predicates.toArray(new Predicate[0]);
return queryContext.CriteriaBuilder.and(predicatesArray);
} else {
return null;
}
}
@Override
protected String fieldNameOf(FieldResolver item) {
return null;
}
@Override
protected EntityUserEntity convert(Tuple tuple, Set<String> columns) {
return null;
}
}

245
annotation-service/annotation/src/main/java/gr/cite/annotation/query/UserQuery.java
View File

@ -1,6 +1,5 @@
package gr.cite.annotation.query;
import gr.cite.commons.web.authz.service.AuthorizationService;
import gr.cite.annotation.authorization.AuthorizationFlags;
import gr.cite.annotation.authorization.Permission;
import gr.cite.annotation.common.enums.IsActive;
@ -8,6 +7,7 @@ import gr.cite.annotation.common.scope.user.UserScope;
import gr.cite.annotation.data.UserEntity;
import gr.cite.annotation.model.User;
import gr.cite.annotation.model.user.PublicUser;
import gr.cite.commons.web.authz.service.AuthorizationService;
import gr.cite.tools.data.query.FieldResolver;
import gr.cite.tools.data.query.QueryBase;
import gr.cite.tools.data.query.QueryContext;
@ -24,136 +24,151 @@ import java.util.*;
@RequestScope
public class UserQuery extends QueryBase<UserEntity> {
private String like;
private Collection<UUID> ids;
private Collection<IsActive> isActives;
private String like;
private EnumSet<AuthorizationFlags> authorize = EnumSet.of(AuthorizationFlags.None);
private Collection<UUID> ids;
private final UserScope userScope;
private final AuthorizationService authService;
private Collection<IsActive> isActives;
public UserQuery(
UserScope userScope,
AuthorizationService authService
) {
this.userScope = userScope;
this.authService = authService;
}
private EnumSet<AuthorizationFlags> authorize = EnumSet.of(AuthorizationFlags.None);
public UserQuery like(String value) {
this.like = value;
return this;
}
private final UserScope userScope;
public UserQuery ids(UUID value) {
this.ids = List.of(value);
return this;
}
private final AuthorizationService authService;
public UserQuery ids(UUID... value) {
this.ids = Arrays.asList(value);
return this;
}
public UserQuery(
UserScope userScope,
AuthorizationService authService
) {
this.userScope = userScope;
this.authService = authService;
}
public UserQuery ids(Collection<UUID> values) {
this.ids = values;
return this;
}
public UserQuery like(String value) {
this.like = value;
return this;
}
public UserQuery isActive(IsActive value) {
this.isActives = List.of(value);
return this;
}
public UserQuery ids(UUID value) {
this.ids = List.of(value);
return this;
}
public UserQuery isActive(IsActive... value) {
this.isActives = Arrays.asList(value);
return this;
}
public UserQuery ids(UUID... value) {
this.ids = Arrays.asList(value);
return this;
}
public UserQuery isActive(Collection<IsActive> values) {
this.isActives = values;
return this;
}
public UserQuery ids(Collection<UUID> values) {
this.ids = values;
return this;
}
public UserQuery authorize(EnumSet<AuthorizationFlags> values) {
this.authorize = values;
return this;
}
public UserQuery isActive(IsActive value) {
this.isActives = List.of(value);
return this;
}
@Override
protected Class<UserEntity> entityClass() {
return UserEntity.class;
}
public UserQuery isActive(IsActive... value) {
this.isActives = Arrays.asList(value);
return this;
}
@Override
protected Boolean isFalseQuery() {
return this.isEmpty(this.ids) || this.isEmpty(this.isActives);
}
public UserQuery isActive(Collection<IsActive> values) {
this.isActives = values;
return this;
}
@Override
protected <X, Y> Predicate applyAuthZ(QueryContext<X, Y> queryContext) {
if (this.authorize.contains(AuthorizationFlags.None)) return null;
if (this.authorize.contains(AuthorizationFlags.Permission) && this.authService.authorize(Permission.BrowseUser)) return null;
UUID ownerId = null;
if (this.authorize.contains(AuthorizationFlags.Owner)) ownerId = this.userScope.getUserIdSafe();
public UserQuery authorize(EnumSet<AuthorizationFlags> values) {
this.authorize = values;
return this;
}
List<Predicate> predicates = new ArrayList<>();
if (ownerId != null) {
predicates.add(queryContext.CriteriaBuilder.equal(queryContext.Root.get(User._id), ownerId));
}
if (predicates.size() > 0) {
Predicate[] predicatesArray = predicates.toArray(new Predicate[0]);
return queryContext.CriteriaBuilder.and(predicatesArray);
} else {
return queryContext.CriteriaBuilder.or(); //Creates a false query
}
}
@Override
protected Class<UserEntity> entityClass() {
return UserEntity.class;
}
@Override
protected <X, Y> Predicate applyFilters(QueryContext<X, Y> queryContext) {
List<Predicate> predicates = new ArrayList<>();
if (this.ids != null) {
CriteriaBuilder.In<UUID> inClause = queryContext.CriteriaBuilder.in(queryContext.Root.get(UserEntity._id));
for (UUID item : this.ids) inClause.value(item);
predicates.add(inClause);
}
if (this.like != null && !this.like.isEmpty()) {
predicates.add(queryContext.CriteriaBuilder.like(queryContext.Root.get(UserEntity._name), this.like));
}
if (this.isActives != null) {
CriteriaBuilder.In<IsActive> inClause = queryContext.CriteriaBuilder.in(queryContext.Root.get(UserEntity._isActive));
for (IsActive item : this.isActives) inClause.value(item);
predicates.add(inClause);
}
if (predicates.size() > 0) {
Predicate[] predicatesArray = predicates.toArray(new Predicate[0]);
return queryContext.CriteriaBuilder.and(predicatesArray);
} else {
return null;
}
}
@Override
protected Boolean isFalseQuery() {
return this.isEmpty(this.ids) || this.isEmpty(this.isActives);
}
@Override
protected UserEntity convert(Tuple tuple, Set<String> columns) {
UserEntity item = new UserEntity();
item.setId(QueryBase.convertSafe(tuple, columns, UserEntity._id, UUID.class));
item.setName(QueryBase.convertSafe(tuple, columns, UserEntity._name, String.class));
item.setAdditionalInfo(QueryBase.convertSafe(tuple, columns, UserEntity._additionalInfo, String.class));
item.setCreatedAt(QueryBase.convertSafe(tuple, columns, UserEntity._createdAt, Instant.class));
item.setUpdatedAt(QueryBase.convertSafe(tuple, columns, UserEntity._updatedAt, Instant.class));
item.setIsActive(QueryBase.convertSafe(tuple, columns, UserEntity._isActive, IsActive.class));
return item;
}
@Override
protected <X, Y> Predicate applyAuthZ(QueryContext<X, Y> queryContext) {
if (this.authorize.contains(AuthorizationFlags.None))
return null;
if (this.authorize.contains(AuthorizationFlags.Permission) && this.authService.authorize(Permission.BrowseUser))
return null;
UUID ownerId = null;
if (this.authorize.contains(AuthorizationFlags.Owner))
ownerId = this.userScope.getUserIdSafe();
@Override
protected String fieldNameOf(FieldResolver item) {
if (item.match(User._id) || item.match(PublicUser._id)) return UserEntity._id;
else if (item.match(User._name) || item.match(PublicUser._name)) return UserEntity._name;
else if (item.match(User._createdAt) ) return UserEntity._createdAt;
else if (item.match(User._updatedAt)) return UserEntity._updatedAt;
else if (item.match(User._hash)) return UserEntity._updatedAt;
else if (item.match(User._isActive)) return UserEntity._isActive;
else return null;
}
List<Predicate> predicates = new ArrayList<>();
if (ownerId != null) {
predicates.add(queryContext.CriteriaBuilder.equal(queryContext.Root.get(User._id), ownerId));
}
if (!predicates.isEmpty()) {
Predicate[] predicatesArray = predicates.toArray(new Predicate[0]);
return queryContext.CriteriaBuilder.and(predicatesArray);
} else {
return queryContext.CriteriaBuilder.or(); //Creates a false query
}
}
@Override
protected <X, Y> Predicate applyFilters(QueryContext<X, Y> queryContext) {
List<Predicate> predicates = new ArrayList<>();
if (this.ids != null) {
CriteriaBuilder.In<UUID> inClause = queryContext.CriteriaBuilder.in(queryContext.Root.get(UserEntity._id));
for (UUID item : this.ids)
inClause.value(item);
predicates.add(inClause);
}
if (this.like != null && !this.like.isEmpty()) {
predicates.add(queryContext.CriteriaBuilder.like(queryContext.Root.get(UserEntity._name), this.like));
}
if (this.isActives != null) {
CriteriaBuilder.In<IsActive> inClause = queryContext.CriteriaBuilder.in(queryContext.Root.get(UserEntity._isActive));
for (IsActive item : this.isActives)
inClause.value(item);
predicates.add(inClause);
}
if (!predicates.isEmpty()) {
Predicate[] predicatesArray = predicates.toArray(new Predicate[0]);
return queryContext.CriteriaBuilder.and(predicatesArray);
} else {
return null;
}
}
@Override
protected UserEntity convert(Tuple tuple, Set<String> columns) {
UserEntity item = new UserEntity();
item.setId(QueryBase.convertSafe(tuple, columns, UserEntity._id, UUID.class));
item.setName(QueryBase.convertSafe(tuple, columns, UserEntity._name, String.class));
item.setAdditionalInfo(QueryBase.convertSafe(tuple, columns, UserEntity._additionalInfo, String.class));
item.setCreatedAt(QueryBase.convertSafe(tuple, columns, UserEntity._createdAt, Instant.class));
item.setUpdatedAt(QueryBase.convertSafe(tuple, columns, UserEntity._updatedAt, Instant.class));
item.setIsActive(QueryBase.convertSafe(tuple, columns, UserEntity._isActive, IsActive.class));
return item;
}
@Override
protected String fieldNameOf(FieldResolver item) {
if (item.match(User._id) || item.match(PublicUser._id))
return UserEntity._id;
else if (item.match(User._name) || item.match(PublicUser._name))
return UserEntity._name;
else if (item.match(User._createdAt))
return UserEntity._createdAt;
else if (item.match(User._updatedAt))
return UserEntity._updatedAt;
else if (item.match(User._hash))
return UserEntity._updatedAt;
else if (item.match(User._isActive))
return UserEntity._isActive;
else
return null;
}
}

2
annotation-service/annotation/src/main/java/gr/cite/annotation/service/user/UserService.java
View File

@ -1,7 +1,7 @@
package gr.cite.annotation.service.user;
import com.fasterxml.jackson.core.JsonProcessingException;
import gr.cite.annotation.integrationevent.inbox.usertouched.UserTouchedIntegrationEvent;
import gr.cite.annotation.integrationevent.inbox.usertouch.UserTouchedIntegrationEvent;
import gr.cite.annotation.model.User;
import gr.cite.tools.exception.MyApplicationException;
import gr.cite.tools.exception.MyForbiddenException;

2
annotation-service/annotation/src/main/java/gr/cite/annotation/service/user/UserServiceImpl.java
View File

@ -10,7 +10,7 @@ import gr.cite.annotation.convention.ConventionService;
import gr.cite.annotation.data.UserContactInfoEntity;
import gr.cite.annotation.data.UserCredentialEntity;
import gr.cite.annotation.data.UserEntity;
import gr.cite.annotation.integrationevent.inbox.usertouched.UserTouchedIntegrationEvent;
import gr.cite.annotation.integrationevent.inbox.usertouch.UserTouchedIntegrationEvent;
import gr.cite.annotation.model.User;
import gr.cite.annotation.model.builder.UserBuilder;
import gr.cite.annotation.model.deleter.UserDeleter;

4
dmp-backend/core/pom.xml
View File

@ -50,12 +50,12 @@
<dependency>
<groupId>gr.cite.opendmp</groupId>
<artifactId>common-models</artifactId>
<version>0.0.2</version>
<version>0.0.3</version>
</dependency>
<dependency>
<groupId>gr.cite.opendmp</groupId>
<artifactId>file-transformer-base</artifactId>
<version>0.0.5</version>
<version>0.0.6</version>
</dependency>
<dependency>
<groupId>gr.cite</groupId>

3
dmp-backend/core/src/main/java/eu/eudat/audit/AuditableAction.java
View File

@ -40,7 +40,8 @@ public class AuditableAction {
public static final EventId Dmp_Invite_Users = new EventId(5008, "Dmp_Invite_Users");
public static final EventId Dmp_Invite_Accept = new EventId(5009, "Dmp_Invite_Accept");
public static final EventId Dmp_PublicQuery = new EventId(5010, "Dmp_PublicQuery");
public static final EventId Dmp_PublicLookup = new EventId(5011, "Dmp_PublicLookup");
public static final EventId Dmp_Export = new EventId(5011, "Dmp_Export");
public static final EventId Dmp_PublicLookup = new EventId(5012, "Dmp_PublicLookup");
public static final EventId Description_Query = new EventId(6000, "Description_Query");
public static final EventId Description_Lookup = new EventId(6001, "Description_Lookup");

2
dmp-backend/core/src/main/java/eu/eudat/authorization/AuthorizationFlags.java
View File

@ -4,5 +4,5 @@ import java.util.EnumSet;
public enum AuthorizationFlags {
None, Permission, DmpAssociated, Public, Owner;
public static final EnumSet<AuthorizationFlags> OwnerOrDmpAssociatedOrPermissionOrPublic = EnumSet.of(DmpAssociated, Permission, Public, Owner);
public static final EnumSet<AuthorizationFlags> OwnerOrDmpAssociatedOrPermission = EnumSet.of(DmpAssociated, Permission, Owner);
}

10
dmp-backend/core/src/main/java/eu/eudat/authorization/Permission.java
View File

@ -3,19 +3,15 @@ package eu.eudat.authorization;
public final class Permission {
/////// Should Remove after Refactor
public static String AnonymousRole = "AnonymousRole";
public static String AdminRole = "AdminRole";
public static String ManagerRole = "ManagerRole";
public static String UserRole = "UserRole";
public static String AuthenticatedRole = "AuthenticatedRole";
public static String PublicRole = "PublicRole";
public static String DatasetProfileManagerRole = "DatasetProfileManagerRole";
/////
public static String DeferredAffiliation = "DeferredAffiliation";
//Public
public static String PublicBrowseDescription = "PublicBrowseDescription";
public static String PublicBrowseDescriptionTemplate = "BrowseDescriptionTemplate";
public static String PublicBrowseDescriptionTemplate = "PublicBrowseDescriptionTemplate";
public static String PublicBrowseDmp = "PublicBrowseDmp";
public static String PublicBrowseDmpReference = "PublicBrowseDmpReference";
public static String PublicBrowseDmpUser = "PublicBrowseDmpUser";
@ -73,6 +69,8 @@ public final class Permission {
//Dmp
public static String BrowseDmp = "BrowseDmp";
public static String EditDmp = "EditDmp";
public static String NewDmp = "NewDmp";
public static String DeleteDmp = "DeleteDmp";
public static String CloneDmp = "CloneDmp";
public static String CreateNewVersionDmp = "CreateNewVersionDmp";

3
dmp-backend/core/src/main/java/eu/eudat/commons/enums/StorageType.java
View File

@ -9,7 +9,8 @@ public enum StorageType implements DatabaseEnum<Short> {
Temp((short) 0),
Main((short) 1),
Transformer((short)2);
Transformer((short)2),
Deposit((short)3);
private final Short value;

18
dmp-backend/core/src/main/java/eu/eudat/configurations/deposit/DepositProperties.java
View File

@ -26,6 +26,8 @@ public class DepositProperties {
private String clientId;
private String clientSecret;
private String scope;
private String pdfTransformerId;
private String rdaTransformerId;
public String getRepositoryId() {
return repositoryId;
@ -74,5 +76,21 @@ public class DepositProperties {
public void setScope(String scope) {
this.scope = scope;
}
public String getPdfTransformerId() {
return pdfTransformerId;
}
public void setPdfTransformerId(String pdfTransformerId) {
this.pdfTransformerId = pdfTransformerId;
}
public String getRdaTransformerId() {
return rdaTransformerId;
}
public void setRdaTransformerId(String rdaTransformerId) {
this.rdaTransformerId = rdaTransformerId;
}
}
}

10
dmp-backend/core/src/main/java/eu/eudat/configurations/transformer/TransformerProperties.java
View File

@ -22,6 +22,7 @@ public class TransformerProperties {
public static class TransformerSource {
private final String url;
private final String transformerId;
private final List<String> codes;
private final String issuerUrl;
private final String clientId;
@ -29,9 +30,10 @@ public class TransformerProperties {
private final String scope;
@ConstructorBinding
public TransformerSource(String url, List<String> codes, String issuerUrl, String clientId, String clientSecret, String scope) {
public TransformerSource(String url, String transformerId, List<String> codes, String issuerUrl, String clientId, String clientSecret, String scope) {
this.url = url;
this.codes = codes;
this.transformerId = transformerId;
this.codes = codes;
this.issuerUrl = issuerUrl;
this.clientId = clientId;
this.clientSecret = clientSecret;
@ -61,5 +63,9 @@ public class TransformerProperties {
public List<String> getCodes() {
return codes;
}
public String getTransformerId() {
return transformerId;
}
}
}

2
dmp-backend/core/src/main/java/eu/eudat/data/ReferenceEntity.java
View File

@ -98,7 +98,7 @@ public class ReferenceEntity extends TenantScopedBaseEntity {
@Column(name = "created_by", columnDefinition = "uuid")
private UUID createdById;
public static final String _createdById = "createdBy";
public static final String _createdById = "createdById";
public UUID getId() {
return id;

2
dmp-backend/core/src/main/java/eu/eudat/integrationevent/outbox/OutboxIntegrationEvent.java
View File

@ -27,6 +27,8 @@ public class OutboxIntegrationEvent extends IntegrationEvent {
public static final String DESCRIPTION_TOUCH = "DESCRIPTION_TOUCH";
public static final String ANNOTATION_ENTITY_TOUCH = "ANNOTATION_ENTITY_TOUCH";
public static final String WHAT_YOU_KNOW_ABOUT_ME_COMPLETED = "WHAT_YOU_KNOW_ABOUT_ME_COMPLETED";
public static final String GENERATE_FILE = "GENERATE_FILE";

12
dmp-backend/core/src/main/java/eu/eudat/integrationevent/outbox/OutboxProperties.java
View File

@ -23,6 +23,8 @@ public class OutboxProperties {
private final String descriptionTouchTopic;
private final String annotationEntityTouchTopic;
private final String notifyTopic;
private final String forgetMeCompletedTopic;
@ -37,7 +39,10 @@ public class OutboxProperties {
String tenantReactivationTopic,
String tenantUserInviteTopic,
String userRemovalTopic,
String userTouchTopic, String dmpTouchTopic, String descriptionTouchTopic,
String userTouchTopic,
String dmpTouchTopic,
String descriptionTouchTopic,
String annotationEntityTouchTopic,
String notifyTopic,
String forgetMeCompletedTopic,
String whatYouKnowAboutMeCompletedTopic,
@ -52,6 +57,7 @@ public class OutboxProperties {
this.userTouchTopic = userTouchTopic;
this.dmpTouchTopic = dmpTouchTopic;
this.descriptionTouchTopic = descriptionTouchTopic;
this.annotationEntityTouchTopic = annotationEntityTouchTopic;
this.notifyTopic = notifyTopic;
this.forgetMeCompletedTopic = forgetMeCompletedTopic;
this.whatYouKnowAboutMeCompletedTopic = whatYouKnowAboutMeCompletedTopic;
@ -94,6 +100,10 @@ public class OutboxProperties {
return descriptionTouchTopic;
}
public String getAnnotationEntityTouchTopic() {
return annotationEntityTouchTopic;
}
public String getNotifyTopic() {
return notifyTopic;
}

4
dmp-backend/core/src/main/java/eu/eudat/integrationevent/outbox/OutboxRepositoryImpl.java
View File

@ -415,6 +415,10 @@ public class OutboxRepositoryImpl implements OutboxRepository {
routingKey = this.outboxProperties.getDescriptionTouchTopic();
break;
}
case OutboxIntegrationEvent.ANNOTATION_ENTITY_TOUCH: {
routingKey = this.outboxProperties.getAnnotationEntityTouchTopic();
break;
}
case OutboxIntegrationEvent.FORGET_ME_COMPLETED: {
routingKey = this.outboxProperties.getForgetMeCompletedTopic();
break;

30
dmp-backend/core/src/main/java/eu/eudat/integrationevent/outbox/annotationentitytouch/AnnotationEntityTouchedIntegrationEvent.java Normal file
View File

@ -0,0 +1,30 @@
package eu.eudat.integrationevent.outbox.annotationentitytouch;
import eu.eudat.integrationevent.TrackedEvent;
import java.util.List;
import java.util.UUID;
public class AnnotationEntityTouchedIntegrationEvent extends TrackedEvent {
private UUID entityId;
private List<UUID> userIds;
public UUID getEntityId() {
return entityId;
}
public void setEntityId(UUID entityId) {
this.entityId = entityId;
}
public List<UUID> getUserIds() {
return userIds;
}
public void setUserIds(List<UUID> userIds) {
this.userIds = userIds;
}
}

25
dmp-backend/core/src/main/java/eu/eudat/integrationevent/outbox/annotationentitytouch/AnnotationEntityTouchedIntegrationEventHandler.java Normal file
View File

@ -0,0 +1,25 @@
package eu.eudat.integrationevent.outbox.annotationentitytouch;
import eu.eudat.integrationevent.outbox.dmptouched.DmpTouchedIntegrationEvent;
import eu.eudat.model.persist.DmpPersist;
import java.util.ArrayList;
import java.util.List;
import java.util.UUID;
public interface AnnotationEntityTouchedIntegrationEventHandler {
void handle(AnnotationEntityTouchedIntegrationEvent event);
static AnnotationEntityTouchedIntegrationEvent buildEventFromPersistModel(DmpPersist persist) {
AnnotationEntityTouchedIntegrationEvent event = new AnnotationEntityTouchedIntegrationEvent();
event.setEntityId(persist.getId());
List<UUID> users = new ArrayList<>();
persist.getUsers().forEach(dmpUserPersist -> {
users.add(dmpUserPersist.getUser());
});
event.setUserIds(users);
return event;
}
}

34
dmp-backend/core/src/main/java/eu/eudat/integrationevent/outbox/annotationentitytouch/AnnotationEntityTouchedIntegrationEventHandlerImpl.java Normal file
View File

@ -0,0 +1,34 @@
package eu.eudat.integrationevent.outbox.annotationentitytouch;
import eu.eudat.integrationevent.outbox.OutboxIntegrationEvent;
import eu.eudat.integrationevent.outbox.OutboxService;
import gr.cite.tools.logging.LoggerService;
import org.slf4j.LoggerFactory;
import org.springframework.beans.factory.config.ConfigurableBeanFactory;
import org.springframework.context.annotation.Scope;
import org.springframework.stereotype.Component;
import java.util.UUID;
@Component
@Scope(value = ConfigurableBeanFactory.SCOPE_PROTOTYPE)
public class AnnotationEntityTouchedIntegrationEventHandlerImpl implements AnnotationEntityTouchedIntegrationEventHandler {
private static final LoggerService logger = new LoggerService(LoggerFactory.getLogger(AnnotationEntityTouchedIntegrationEventHandlerImpl.class));
private final OutboxService outboxService;
public AnnotationEntityTouchedIntegrationEventHandlerImpl(OutboxService outboxService) {
this.outboxService = outboxService;
}
@Override
public void handle(AnnotationEntityTouchedIntegrationEvent event) {
OutboxIntegrationEvent message = new OutboxIntegrationEvent();
message.setMessageId(UUID.randomUUID());
message.setType(OutboxIntegrationEvent.ANNOTATION_ENTITY_TOUCH);
message.setEvent(event);
this.outboxService.publish(message);
}
}

43
dmp-backend/core/src/main/java/eu/eudat/model/PublicDmp.java
View File

@ -37,7 +37,16 @@ public class PublicDmp {
public static final String _publishedAt = "publishedAt";
private List<PublicDmpUser> users;
private DmpStatus status;
public static final String _status = "status";
private UUID groupId;
public static final String _groupId = "groupId";
private DmpAccessType accessType;
public static final String _accessType = "accessType";
private List<PublicDmpUser> dmpUsers;
public static final String _dmpUsers = "dmpUsers";
@ -104,12 +113,36 @@ public class PublicDmp {
this.publishedAt = publishedAt;
}
public List<PublicDmpUser> getUsers() {
return users;
public DmpStatus getStatus() {
return status;
}
public void setUsers(List<PublicDmpUser> users) {
this.users = users;
public void setStatus(DmpStatus status) {
this.status = status;
}
public UUID getGroupId() {
return groupId;
}
public void setGroupId(UUID groupId) {
this.groupId = groupId;
}
public DmpAccessType getAccessType() {
return accessType;
}
public void setAccessType(DmpAccessType accessType) {
this.accessType = accessType;
}
public List<PublicDmpUser> getDmpUsers() {
return dmpUsers;
}
public void setDmpUsers(List<PublicDmpUser> dmpUsers) {
this.dmpUsers = dmpUsers;
}
public List<PublicDmpReference> getDmpReferences() {

13
dmp-backend/core/src/main/java/eu/eudat/model/PublicDmpReference.java
View File

@ -1,5 +1,7 @@
package eu.eudat.model;
import eu.eudat.commons.enums.IsActive;
import java.time.Instant;
import java.util.UUID;
@ -14,6 +16,9 @@ public class PublicDmpReference {
private PublicReference reference;
public static final String _reference = "reference";
private IsActive isActive;
public static final String _isActive = "isActive";
public UUID getId() {
return id;
}
@ -37,4 +42,12 @@ public class PublicDmpReference {
public void setReference(PublicReference reference) {
this.reference = reference;
}
public IsActive getIsActive() {
return isActive;
}
public void setIsActive(IsActive isActive) {
this.isActive = isActive;
}
}

8
dmp-backend/core/src/main/java/eu/eudat/model/builder/PublicDmpBuilder.java
View File

@ -74,9 +74,13 @@ public class PublicDmpBuilder extends BaseBuilder<PublicDmp, DmpEntity> {
if (fields.hasField(this.asIndexer(PublicDmp._description))) m.setDescription(d.getDescription());
if (fields.hasField(this.asIndexer(PublicDmp._finalizedAt))) m.setFinalizedAt(d.getFinalizedAt());
if (fields.hasField(this.asIndexer(PublicDmp._updatedAt))) m.setUpdatedAt(d.getUpdatedAt());
if (fields.hasField(this.asIndexer(PublicDmp._accessType))) m.setAccessType(d.getAccessType());
if (fields.hasField(this.asIndexer(PublicDmp._status))) m.setStatus(d.getStatus());
if (fields.hasField(this.asIndexer(PublicDmp._groupId))) m.setGroupId(d.getGroupId());
if (fields.hasField(this.asIndexer(PublicDmp._accessType))) m.setAccessType(d.getAccessType());
if (dmpReferenceMap != null && !dmpReferenceMap.isEmpty() && dmpReferenceMap.containsKey(d.getId())) m.setDmpReferences(dmpReferenceMap.get(d.getId()));
if (dmpUsersMap != null && !dmpUsersMap.isEmpty() && dmpUsersMap.containsKey(d.getId())) m.setUsers(dmpUsersMap.get(d.getId()));
if (dmpUsersMap != null && !dmpUsersMap.isEmpty() && dmpUsersMap.containsKey(d.getId())) m.setDmpUsers(dmpUsersMap.get(d.getId()));
if (descriptionsMap != null && !descriptionsMap.isEmpty() && descriptionsMap.containsKey(d.getId())) m.setDescriptions(descriptionsMap.get(d.getId()));
models.add(m);
@ -109,7 +113,7 @@ public class PublicDmpBuilder extends BaseBuilder<PublicDmp, DmpEntity> {
this.logger.debug("checking related - {}", PublicDmpUser.class.getSimpleName());
Map<UUID, List<PublicDmpUser>> itemMap = null;
FieldSet clone = new BaseFieldSet(fields.getFields()).ensure(this.asIndexer(PublicDmpUser._user, PublicDmp._id));
FieldSet clone = new BaseFieldSet(fields.getFields()).ensure(this.asIndexer(PublicDmpUser._dmp, PublicDmp._id));
DmpUserQuery query = this.queryFactory.query(DmpUserQuery.class).authorize(this.authorize).dmpIds(data.stream().map(DmpEntity::getId).distinct().collect(Collectors.toList()));
itemMap = this.builderFactory.builder(PublicDmpUserBuilder.class).authorize(this.authorize).asMasterKey(query, clone, x -> x.getDmp().getId());

1
dmp-backend/core/src/main/java/eu/eudat/model/builder/PublicDmpReferenceBuilder.java
View File

@ -66,6 +66,7 @@ public class PublicDmpReferenceBuilder extends BaseBuilder<PublicDmpReference, D
for (DmpReferenceEntity d : data) {
PublicDmpReference m = new PublicDmpReference();
if (fields.hasField(this.asIndexer(PublicDmpReference._id))) m.setId(d.getId());
if (fields.hasField(this.asIndexer(PublicDmpReference._isActive))) m.setIsActive(d.getIsActive());
if (!referenceFields.isEmpty() && referenceItemsMap != null && referenceItemsMap.containsKey(d.getReferenceId())) m.setReference(referenceItemsMap.get(d.getReferenceId()));
if (!dmpFields.isEmpty() && dmpItemsMap != null && dmpItemsMap.containsKey(d.getDmpId())) m.setDmp(dmpItemsMap.get(d.getDmpId()));
models.add(m);

11
dmp-backend/core/src/main/java/eu/eudat/model/builder/commonmodels/description/DescriptionCommonModelBuilder.java
View File

@ -64,6 +64,13 @@ public class DescriptionCommonModelBuilder extends BaseCommonModelBuilder<Descri
return this;
}
private boolean useSharedStorage;
public DescriptionCommonModelBuilder useSharedStorage(boolean useSharedStorage) {
this.useSharedStorage = useSharedStorage;
return this;
}
@Override
protected List<CommonModelBuilderItemResponse<DescriptionModel, DescriptionEntity>> buildInternal(List<DescriptionEntity> data) throws MyApplicationException {
this.logger.debug("building for {}", Optional.ofNullable(data).map(List::size).orElse(0));
@ -95,7 +102,7 @@ public class DescriptionCommonModelBuilder extends BaseCommonModelBuilder<Descri
if (d.getProperties() != null){
//TODO Update with the new logic of property definition
PropertyDefinitionEntity propertyDefinition = this.jsonHandlingService.fromJsonSafe(PropertyDefinitionEntity.class, d.getProperties());
m.setProperties(this.builderFactory.builder(PropertyDefinitionCommonModelBuilder.class).withDefinition(definitionEntityMap != null ? definitionEntityMap.getOrDefault(d.getDescriptionTemplateId(), null) : null).authorize(this.authorize).build(propertyDefinition));
m.setProperties(this.builderFactory.builder(PropertyDefinitionCommonModelBuilder.class).useSharedStorage(useSharedStorage).withDefinition(definitionEntityMap != null ? definitionEntityMap.getOrDefault(d.getDescriptionTemplateId(), null) : null).authorize(this.authorize).build(propertyDefinition));
}
models.add(new CommonModelBuilderItemResponse<>(m, d));
}
@ -143,7 +150,7 @@ public class DescriptionCommonModelBuilder extends BaseCommonModelBuilder<Descri
Map<UUID, DmpModel> itemMap;
DmpQuery q = this.queryFactory.query(DmpQuery.class).authorize(this.authorize).ids(data.stream().map(DescriptionEntity::getDmpId).distinct().collect(Collectors.toList()));
itemMap = this.builderFactory.builder(DmpCommonModelBuilder.class).setDisableDescriptions(true).authorize(this.authorize).asForeignKey(q, DmpEntity::getId);
itemMap = this.builderFactory.builder(DmpCommonModelBuilder.class).useSharedStorage(useSharedStorage).setDisableDescriptions(true).authorize(this.authorize).asForeignKey(q, DmpEntity::getId);
return itemMap;
}

64
dmp-backend/core/src/main/java/eu/eudat/model/builder/commonmodels/description/FieldCommonModelBuilder.java
View File

@ -1,27 +1,42 @@
package eu.eudat.model.builder.commonmodels.description;
import eu.eudat.authorization.AuthorizationFlags;
import eu.eudat.commonmodels.models.FileEnvelopeModel;
import eu.eudat.commonmodels.models.description.FieldModel;
import eu.eudat.commonmodels.models.reference.ReferenceModel;
import eu.eudat.commons.enums.FieldType;
import eu.eudat.commons.enums.StorageType;
import eu.eudat.commons.scope.user.UserScope;
import eu.eudat.commons.types.description.FieldEntity;
import eu.eudat.convention.ConventionService;
import eu.eudat.data.ReferenceEntity;
import eu.eudat.data.StorageFileEntity;
import eu.eudat.model.Reference;
import eu.eudat.model.StorageFile;
import eu.eudat.model.builder.commonmodels.BaseCommonModelBuilder;
import eu.eudat.model.builder.commonmodels.CommonModelBuilderItemResponse;
import eu.eudat.model.builder.commonmodels.reference.ReferenceCommonModelBuilder;
import eu.eudat.model.persist.StorageFilePersist;
import eu.eudat.query.ReferenceQuery;
import eu.eudat.query.StorageFileQuery;
import eu.eudat.service.storage.StorageFileProperties;
import eu.eudat.service.storage.StorageFileService;
import gr.cite.tools.data.builder.BuilderFactory;
import gr.cite.tools.data.query.QueryFactory;
import gr.cite.tools.exception.MyApplicationException;
import gr.cite.tools.fieldset.BaseFieldSet;
import gr.cite.tools.logging.LoggerService;
import gr.cite.tools.validation.ValidatorFactory;
import org.apache.commons.io.FilenameUtils;
import org.slf4j.LoggerFactory;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.beans.factory.config.ConfigurableBeanFactory;
import org.springframework.context.annotation.Scope;
import org.springframework.stereotype.Component;
import java.io.IOException;
import java.net.URLConnection;
import java.time.Duration;
import java.util.*;
import java.util.stream.Collectors;
@ -32,24 +47,38 @@ public class FieldCommonModelBuilder extends BaseCommonModelBuilder<FieldModel,
private final QueryFactory queryFactory;
private EnumSet<AuthorizationFlags> authorize = EnumSet.of(AuthorizationFlags.None);
private eu.eudat.commons.types.descriptiontemplate.FieldEntity fieldEntity;
private final StorageFileService storageFileService;
private final UserScope userScope;
private final ValidatorFactory validatorFactory;
private final StorageFileProperties storageFileProperties;
@Autowired
public FieldCommonModelBuilder(
ConventionService conventionService, BuilderFactory builderFactory, QueryFactory queryFactory
ConventionService conventionService, BuilderFactory builderFactory, QueryFactory queryFactory, StorageFileService storageFileService, UserScope userScope, ValidatorFactory validatorFactory, StorageFileProperties storageFileProperties
) {
super(conventionService, new LoggerService(LoggerFactory.getLogger(FieldCommonModelBuilder.class)));
this.builderFactory = builderFactory;
this.queryFactory = queryFactory;
this.storageFileService = storageFileService;
this.userScope = userScope;
this.validatorFactory = validatorFactory;
this.storageFileProperties = storageFileProperties;
}
public FieldCommonModelBuilder authorize(EnumSet<AuthorizationFlags> values) {
this.authorize = values;
return this;
}
public FieldCommonModelBuilder withFieldEntity(eu.eudat.commons.types.descriptiontemplate.FieldEntity fieldEntity) {
this.fieldEntity = fieldEntity;
return this;
}
private boolean useSharedStorage;
public FieldCommonModelBuilder useSharedStorage(boolean useSharedStorage) {
this.useSharedStorage = useSharedStorage;
return this;
}
@Override
protected List<CommonModelBuilderItemResponse<FieldModel, FieldEntity>> buildInternal(List<FieldEntity> data) throws MyApplicationException {
this.logger.debug("building for {}", Optional.ofNullable(data).map(List::size).orElse(0));
@ -72,6 +101,24 @@ public class FieldCommonModelBuilder extends BaseCommonModelBuilder<FieldModel,
if (referenceItemsMap.containsKey(referenceId)) m.getReferences().add(referenceItemsMap.get(referenceId));
}
}
if (FieldType.UPLOAD.equals(fieldType) && d.getTextValue() != null && !d.getTextValue().isEmpty()) {
try {
byte[] bytes = this.storageFileService.readAsBytesSafe(UUID.fromString(d.getTextValue()));
FileEnvelopeModel fileEnvelopeModel = new FileEnvelopeModel();
StorageFileEntity storageFile = this.queryFactory.query(StorageFileQuery.class).ids(UUID.fromString(d.getTextValue())).first();
fileEnvelopeModel.setFile(bytes);
fileEnvelopeModel.setFilename(storageFile.getName() + (storageFile.getExtension().startsWith(".") ? "" : ".") + storageFile.getExtension());
fileEnvelopeModel.setMimeType(storageFile.getMimeType());
if (!useSharedStorage){
fileEnvelopeModel.setFile(bytes);
} else {
fileEnvelopeModel.setFileRef(this.addFileToSharedStorage(bytes, storageFile));
}
}catch (Exception e){
logger.error(e.getMessage());
}
}
if (d.getExternalIdentifier() != null && FieldType.isExternalIdentifierType(fieldType)) m.setExternalIdentifier(this.builderFactory.builder(ExternalIdentifierCommonModelBuilder.class).authorize(this.authorize).build(d.getExternalIdentifier()));
models.add(new CommonModelBuilderItemResponse<>(m, d));
@ -82,6 +129,19 @@ public class FieldCommonModelBuilder extends BaseCommonModelBuilder<FieldModel,
return models;
}
private String addFileToSharedStorage(byte[] bytes, StorageFileEntity storageFile) throws IOException {
StorageFilePersist storageFilePersist = new StorageFilePersist();
storageFilePersist.setName(FilenameUtils.removeExtension(storageFile.getName()));
storageFilePersist.setExtension(FilenameUtils.getExtension(storageFile.getExtension()));
storageFilePersist.setMimeType(URLConnection.guessContentTypeFromName(storageFile.getName() + (storageFile.getExtension().startsWith(".") ? "" : ".") + storageFile.getExtension()));
storageFilePersist.setOwnerId(this.userScope.getUserIdSafe());
storageFilePersist.setStorageType(StorageType.Temp);
storageFilePersist.setLifetime(Duration.ofSeconds(this.storageFileProperties.getTempStoreLifetimeSeconds())); //TODO
this.validatorFactory.validator(StorageFilePersist.StorageFilePersistValidator.class).validateForce(storageFilePersist);
StorageFile persisted = this.storageFileService.persistBytes(storageFilePersist, bytes, new BaseFieldSet(StorageFile._id, StorageFile._fileRef));
return persisted.getFileRef();
}
private Map<UUID, ReferenceModel> collectReferences(List<FieldEntity> data) throws MyApplicationException {
if (data.isEmpty())
return null;

9
dmp-backend/core/src/main/java/eu/eudat/model/builder/commonmodels/description/PropertyDefinitionCommonModelBuilder.java
View File

@ -42,6 +42,13 @@ public class PropertyDefinitionCommonModelBuilder extends BaseCommonModelBuilder
this.definition = definition;
return this;
}
private boolean useSharedStorage;
public PropertyDefinitionCommonModelBuilder useSharedStorage(boolean useSharedStorage) {
this.useSharedStorage = useSharedStorage;
return this;
}
@Override
protected List<CommonModelBuilderItemResponse<PropertyDefinitionModel, PropertyDefinitionEntity>> buildInternal(List<PropertyDefinitionEntity> data) throws MyApplicationException {
this.logger.debug("building for {}", Optional.ofNullable(data).map(List::size).orElse(0));
@ -53,7 +60,7 @@ public class PropertyDefinitionCommonModelBuilder extends BaseCommonModelBuilder
m.setFieldSets(new HashMap<>());
for (String key : d.getFieldSets().keySet()){
FieldSetEntity fieldSetEntity = definition != null ? definition.getFieldSetById(key).stream().findFirst().orElse(null) : null;
m.getFieldSets().put(key, this.builderFactory.builder(PropertyDefinitionFieldSetCommonModelBuilder.class).authorize(this.authorize).withFieldSetEntity(fieldSetEntity).build(d.getFieldSets().get(key)));
m.getFieldSets().put(key, this.builderFactory.builder(PropertyDefinitionFieldSetCommonModelBuilder.class).useSharedStorage(useSharedStorage).authorize(this.authorize).withFieldSetEntity(fieldSetEntity).build(d.getFieldSets().get(key)));
}
models.add(new CommonModelBuilderItemResponse<>(m, d));
}

9
dmp-backend/core/src/main/java/eu/eudat/model/builder/commonmodels/description/PropertyDefinitionFieldSetCommonModelBuilder.java
View File

@ -42,6 +42,13 @@ public class PropertyDefinitionFieldSetCommonModelBuilder extends BaseCommonMode
this.fieldSetEntity = fieldSetEntity;
return this;
}
private boolean useSharedStorage;
public PropertyDefinitionFieldSetCommonModelBuilder useSharedStorage(boolean useSharedStorage) {
this.useSharedStorage = useSharedStorage;
return this;
}
@Override
protected List<CommonModelBuilderItemResponse<PropertyDefinitionFieldSetModel, PropertyDefinitionFieldSetEntity>> buildInternal(List<PropertyDefinitionFieldSetEntity> data) throws MyApplicationException {
this.logger.debug("building for {}", Optional.ofNullable(data).map(List::size).orElse(0));
@ -50,7 +57,7 @@ public class PropertyDefinitionFieldSetCommonModelBuilder extends BaseCommonMode
List<CommonModelBuilderItemResponse<PropertyDefinitionFieldSetModel, PropertyDefinitionFieldSetEntity>> models = new ArrayList<>();
for (PropertyDefinitionFieldSetEntity d : data) {
PropertyDefinitionFieldSetModel m = new PropertyDefinitionFieldSetModel();
if (d.getItems() != null) m.setItems(this.builderFactory.builder(PropertyDefinitionFieldSetItemModelCommonModelBuilder.class).withFieldSetEntity(this.fieldSetEntity).authorize(this.authorize).build(d.getItems()));
if (d.getItems() != null) m.setItems(this.builderFactory.builder(PropertyDefinitionFieldSetItemModelCommonModelBuilder.class).useSharedStorage(useSharedStorage).withFieldSetEntity(this.fieldSetEntity).authorize(this.authorize).build(d.getItems()));
models.add(new CommonModelBuilderItemResponse<>(m, d));
}

9
dmp-backend/core/src/main/java/eu/eudat/model/builder/commonmodels/description/PropertyDefinitionFieldSetItemModelCommonModelBuilder.java
View File

@ -45,6 +45,13 @@ public class PropertyDefinitionFieldSetItemModelCommonModelBuilder extends BaseC
}
private boolean useSharedStorage;
public PropertyDefinitionFieldSetItemModelCommonModelBuilder useSharedStorage(boolean useSharedStorage) {
this.useSharedStorage = useSharedStorage;
return this;
}
@Override
protected List<CommonModelBuilderItemResponse<PropertyDefinitionFieldSetItemModel, PropertyDefinitionFieldSetItemEntity>> buildInternal(List<PropertyDefinitionFieldSetItemEntity> data) throws MyApplicationException {
this.logger.debug("building for {}", Optional.ofNullable(data).map(List::size).orElse(0));
@ -60,7 +67,7 @@ public class PropertyDefinitionFieldSetItemModelCommonModelBuilder extends BaseC
m.setFields(new HashMap<>());
for (String key : d.getFields().keySet()){
FieldEntity fieldEntity = fieldSetEntity != null ? fieldSetEntity.getAllField().stream().findFirst().orElse(null) : null;
m.getFields().put(key, this.builderFactory.builder(FieldCommonModelBuilder.class).authorize(this.authorize).withFieldEntity(fieldEntity).build(d.getFields().get(key)));
m.getFields().put(key, this.builderFactory.builder(FieldCommonModelBuilder.class).useSharedStorage(useSharedStorage).authorize(this.authorize).withFieldEntity(fieldEntity).build(d.getFields().get(key)));
}
}
models.add(new CommonModelBuilderItemResponse<>(m, d));

18
dmp-backend/core/src/main/java/eu/eudat/model/builder/commonmodels/dmp/DmpCommonModelBuilder.java
View File

@ -11,7 +11,6 @@ import eu.eudat.commonmodels.models.description.DescriptionModel;
import eu.eudat.commonmodels.models.dmp.DmpModel;
import eu.eudat.commonmodels.models.dmpblueprint.DmpBlueprintModel;
import eu.eudat.commonmodels.models.dmpreference.DmpReferenceModel;
import eu.eudat.commonmodels.models.reference.ReferenceModel;
import eu.eudat.commons.JsonHandlingService;
import eu.eudat.commons.enums.IsActive;
import eu.eudat.commons.types.dmp.DmpPropertiesEntity;
@ -22,7 +21,6 @@ import eu.eudat.model.builder.commonmodels.*;
import eu.eudat.model.builder.commonmodels.description.DescriptionCommonModelBuilder;
import eu.eudat.model.builder.commonmodels.dmpblueprint.DmpBlueprintCommonModelBuilder;
import eu.eudat.model.builder.commonmodels.dmpreference.DmpReferenceCommonModelBuilder;
import eu.eudat.model.builder.commonmodels.reference.ReferenceCommonModelBuilder;
import eu.eudat.query.*;
import gr.cite.tools.data.builder.BuilderFactory;
import gr.cite.tools.data.query.Ordering;
@ -49,7 +47,6 @@ public class DmpCommonModelBuilder extends BaseCommonModelBuilder<DmpModel, DmpE
private final JsonHandlingService jsonHandlingService;
private FileEnvelopeModel pdfFile;
private FileEnvelopeModel rdaJsonFile;
private FileEnvelopeModel supportingFilesZip;
private String repositoryId;
private boolean disableDescriptions;
private EnumSet<AuthorizationFlags> authorize = EnumSet.of(AuthorizationFlags.None);
@ -79,11 +76,6 @@ public class DmpCommonModelBuilder extends BaseCommonModelBuilder<DmpModel, DmpE
return this;
}
public DmpCommonModelBuilder setSupportingFilesZip(FileEnvelopeModel supportingFilesZip) {
this.supportingFilesZip = supportingFilesZip;
return this;
}
public DmpCommonModelBuilder setRepositoryId(String repositoryId) {
this.repositoryId = repositoryId;
return this;
@ -94,6 +86,13 @@ public class DmpCommonModelBuilder extends BaseCommonModelBuilder<DmpModel, DmpE
return this;
}
private boolean useSharedStorage;
public DmpCommonModelBuilder useSharedStorage(boolean useSharedStorage) {
this.useSharedStorage = useSharedStorage;
return this;
}
@Override
protected List<CommonModelBuilderItemResponse<DmpModel, DmpEntity>> buildInternal(List<DmpEntity> data) throws MyApplicationException {
this.logger.debug("building for {}", Optional.ofNullable(data).map(List::size).orElse(0));
@ -134,7 +133,6 @@ public class DmpCommonModelBuilder extends BaseCommonModelBuilder<DmpModel, DmpE
m.setUpdatedAt(d.getUpdatedAt());
m.setPdfFile(this.pdfFile);
m.setRdaJsonFile(this.rdaJsonFile);
m.setSupportingFilesZip(this.supportingFilesZip);
if (d.getVersion() > (short)1) m.setPreviousDOI(this.getPreviousDOI(d.getGroupId(), d.getId()));
switch (d.getAccessType()){
case Public -> m.setAccessType(DmpAccessType.Public);
@ -197,7 +195,7 @@ public class DmpCommonModelBuilder extends BaseCommonModelBuilder<DmpModel, DmpE
Map<UUID, List<DescriptionModel>> itemMap;
DescriptionQuery query = this.queryFactory.query(DescriptionQuery.class).isActive(IsActive.Active).authorize(this.authorize).dmpIds(data.stream().map(DmpEntity::getId).distinct().collect(Collectors.toList()));
itemMap = this.builderFactory.builder(DescriptionCommonModelBuilder.class).authorize(this.authorize).asMasterKey(query, DescriptionEntity::getDmpId);
itemMap = this.builderFactory.builder(DescriptionCommonModelBuilder.class).useSharedStorage(useSharedStorage).authorize(this.authorize).asMasterKey(query, DescriptionEntity::getDmpId);
return itemMap;
}

2
dmp-backend/core/src/main/java/eu/eudat/model/censorship/DescriptionCensor.java
View File

@ -37,7 +37,7 @@ public class DescriptionCensor extends BaseCensor {
if (fields == null || fields.isEmpty())
return;
this.authService.authorizeForce(Permission.BrowseDescription);
this.authService.authorizeForce(Permission.BrowseDescription, Permission.DeferredAffiliation);
FieldSet descriptionReferenceFields = fields.extractPrefixed(this.asIndexerPrefix(Description._descriptionReferences));
this.censorFactory.censor(DescriptionReferenceCensor.class).censor(descriptionReferenceFields, userId);

2
dmp-backend/core/src/main/java/eu/eudat/model/censorship/DmpCensor.java
View File

@ -39,7 +39,7 @@ public class DmpCensor extends BaseCensor {
if (fields.isEmpty())
return;
this.authService.authorizeForce(Permission.BrowseDmp);
this.authService.authorizeForce(Permission.BrowseDmp, Permission.DeferredAffiliation);
FieldSet dmpUsersFields = fields.extractPrefixed(this.asIndexerPrefix(Dmp._dmpUsers));
this.censorFactory.censor(DmpUserCensor.class).censor(dmpUsersFields, userId);

2
dmp-backend/core/src/main/java/eu/eudat/model/censorship/DmpDescriptionTemplateCensor.java
View File

@ -39,7 +39,7 @@ public class DmpDescriptionTemplateCensor extends BaseCensor{
if (fields == null || fields.isEmpty())
return;
this.authService.authorizeForce(Permission.BrowseDescription);
this.authService.authorizeForce(Permission.BrowseDescription, Permission.DeferredAffiliation);
FieldSet dmpFields = fields.extractPrefixed(this.asIndexerPrefix(DmpDescriptionTemplate._dmp));
this.censorFactory.censor(DmpCensor.class).censor(dmpFields, userId);
FieldSet descriptionTemplatesFields = fields.extractPrefixed(this.asIndexerPrefix(DmpDescriptionTemplate._descriptionTemplates));

2
dmp-backend/core/src/main/java/eu/eudat/model/censorship/DmpReferenceCensor.java
View File

@ -38,7 +38,7 @@ public class DmpReferenceCensor extends BaseCensor {
if (fields == null || fields.isEmpty())
return;
this.authService.authorizeForce(Permission.BrowseDmpDescriptionTemplate);
this.authService.authorizeForce(Permission.BrowseDmpDescriptionTemplate, Permission.DeferredAffiliation);
FieldSet dmpFields = fields.extractPrefixed(this.asIndexerPrefix(DmpReference._dmp));
this.censorFactory.censor(DmpCensor.class).censor(dmpFields, userId);
FieldSet templateFields = fields.extractPrefixed(this.asIndexerPrefix(DmpReference._reference));

2
dmp-backend/core/src/main/java/eu/eudat/model/censorship/DmpUserCensor.java
View File

@ -37,7 +37,7 @@ public class DmpUserCensor extends BaseCensor {
if (fields == null || fields.isEmpty())
return;
this.authService.authorizeForce(Permission.BrowseDmpUser);
this.authService.authorizeForce(Permission.BrowseDmpUser, Permission.DeferredAffiliation);
FieldSet dmpFields = fields.extractPrefixed(this.asIndexerPrefix(DmpUser._dmp));
this.censorFactory.censor(DmpCensor.class).censor(dmpFields, userId);
FieldSet userFields = fields.extractPrefixed(this.asIndexerPrefix(DmpUser._user));

2
dmp-backend/core/src/main/java/eu/eudat/model/censorship/EntityDoiCensor.java
View File

@ -31,6 +31,6 @@ public class EntityDoiCensor extends BaseCensor{
if (fields == null || fields.isEmpty())
return;
this.authService.authorizeForce(Permission.BrowseEntityDoi);
this.authService.authorizeForce(Permission.BrowseEntityDoi, Permission.DeferredAffiliation);
}
}

2
dmp-backend/core/src/main/java/eu/eudat/model/censorship/ReferenceTypeCensor.java
View File

@ -38,7 +38,7 @@ public class ReferenceTypeCensor extends BaseCensor {
if (fields == null || fields.isEmpty())
return;
this.authService.authorizeForce(Permission.BrowseReferenceType);
this.authService.authorizeForce(Permission.BrowseReferenceType, Permission.DeferredAffiliation);
FieldSet definitionFields = fields.extractPrefixed(this.asIndexerPrefix(ReferenceType._definition));
this.censorFactory.censor(ReferenceTypeDefinitionCensor.class).censor(definitionFields, userId);
}

2
dmp-backend/core/src/main/java/eu/eudat/model/censorship/UserCensor.java
View File

@ -37,7 +37,7 @@ public class UserCensor extends BaseCensor {
logger.debug(new DataLogEntry("censoring fields", fields));
if (fields == null || fields.isEmpty())
return;
this.authService.authorizeAtLeastOneForce(userId != null ? List.of(new OwnedResource(userId)) : null, Permission.BrowseUser);
this.authService.authorizeAtLeastOneForce(userId != null ? List.of(new OwnedResource(userId)) : null, Permission.BrowseUser, Permission.DeferredAffiliation);
FieldSet rolesFields = fields.extractPrefixed(this.asIndexerPrefix(User._roles));
this.censorFactory.censor(UserRoleCensor.class).censor(rolesFields, userId);

9
dmp-backend/core/src/main/java/eu/eudat/model/file/ExportRequestModel.java
View File

@ -5,6 +5,7 @@ import java.util.UUID;
public class ExportRequestModel {
private UUID id;
private String repositoryId;
private String format;
public UUID getId() {
@ -22,4 +23,12 @@ public class ExportRequestModel {
public void setFormat(String format) {
this.format = format;
}
public String getRepositoryId() {
return repositoryId;
}
public void setRepositoryId(String repositoryId) {
this.repositoryId = repositoryId;
}
}

5
dmp-backend/core/src/main/java/eu/eudat/query/DmpUserQuery.java
View File

@ -5,9 +5,12 @@ import eu.eudat.authorization.Permission;
import eu.eudat.commons.enums.DmpUserRole;
import eu.eudat.commons.enums.IsActive;
import eu.eudat.commons.scope.user.UserScope;
import eu.eudat.data.DmpReferenceEntity;
import eu.eudat.data.DmpUserEntity;
import eu.eudat.data.ReferenceEntity;
import eu.eudat.model.DmpUser;
import eu.eudat.model.PublicDmpUser;
import eu.eudat.query.utils.BuildSubQueryInput;
import eu.eudat.query.utils.QueryUtilsService;
import gr.cite.commons.web.authz.service.AuthorizationService;
import gr.cite.tools.data.query.FieldResolver;
@ -173,7 +176,7 @@ public class DmpUserQuery extends QueryBase<DmpUserEntity> {
if (userId != null || usePublic ) {
predicates.add(queryContext.CriteriaBuilder.or(
usePublic ? queryContext.CriteriaBuilder.in(queryContext.Root.get(DmpUserEntity._dmpId)).value(queryUtilsService.buildPublicDmpAuthZSubQuery(queryContext.Query, queryContext.CriteriaBuilder, usePublic)) : queryContext.CriteriaBuilder.or(), //Creates a false query
userId != null ? queryContext.CriteriaBuilder.equal(queryContext.Root.get(DmpUserEntity._userId), userId) : queryContext.CriteriaBuilder.or() //Creates a false query
userId != null ? queryContext.CriteriaBuilder.in(queryContext.Root.get(DmpUserEntity._dmpId)).value(queryUtilsService.buildDmpUserAuthZSubQuery(queryContext.Query, queryContext.CriteriaBuilder, userId)) : queryContext.CriteriaBuilder.or() //Creates a false query
));
}
if (!predicates.isEmpty()) {

38
dmp-backend/core/src/main/java/eu/eudat/query/EntityDoiQuery.java
View File

@ -1,13 +1,15 @@
package eu.eudat.query;
import eu.eudat.authorization.AuthorizationFlags;
import eu.eudat.authorization.Permission;
import eu.eudat.commons.enums.EntityType;
import eu.eudat.commons.enums.IsActive;
import eu.eudat.commons.scope.user.UserScope;
import eu.eudat.data.DmpEntity;
import eu.eudat.data.EntityDoiEntity;
import eu.eudat.data.*;
import eu.eudat.model.Dmp;
import eu.eudat.model.EntityDoi;
import eu.eudat.query.utils.BuildSubQueryInput;
import eu.eudat.query.utils.QueryUtilsService;
import gr.cite.commons.web.authz.service.AuthorizationService;
import gr.cite.tools.data.query.FieldResolver;
import gr.cite.tools.data.query.QueryBase;
@ -151,10 +153,19 @@ public class EntityDoiQuery extends QueryBase<EntityDoiEntity> {
return this;
}
private final UserScope userScope;
private final AuthorizationService authService;
private final QueryUtilsService queryUtilsService;
public EntityDoiQuery(
) {
UserScope userScope, AuthorizationService authService, QueryUtilsService queryUtilsService) {
this.userScope = userScope;
this.authService = authService;
this.queryUtilsService = queryUtilsService;
}
@Override
@ -167,6 +178,27 @@ public class EntityDoiQuery extends QueryBase<EntityDoiEntity> {
return this.isEmpty(this.ids) || this.isEmpty(this.isActives)|| this.isEmpty(this.repositoryIds) || this.isEmpty(this.excludedIds) || this.isEmpty(this.types);
}
@Override
protected <X, Y> Predicate applyAuthZ(QueryContext<X, Y> queryContext) {
if (this.authorize.contains(AuthorizationFlags.None)) return null;
if (this.authorize.contains(AuthorizationFlags.Permission) && this.authService.authorize(Permission.BrowseUser)) return null;
UUID userId;
if (this.authorize.contains(AuthorizationFlags.Owner)) userId = this.userScope.getUserIdSafe();
else userId = null;
List<Predicate> predicates = new ArrayList<>();
boolean usePublic = this.authorize.contains(AuthorizationFlags.Public);
if (userId != null || usePublic) {
predicates.add(queryContext.CriteriaBuilder.in(queryContext.Root.get(EntityDoiEntity._entityId)).value( queryContext.CriteriaBuilder.in(queryContext.Root.get(DmpUserEntity._dmpId)).value(queryUtilsService.buildDmpAuthZSubQuery(queryContext.Query, queryContext.CriteriaBuilder, userId, usePublic))));
}
if (!predicates.isEmpty()) {
Predicate[] predicatesArray = predicates.toArray(new Predicate[0]);
return queryContext.CriteriaBuilder.and(predicatesArray);
} else {
return queryContext.CriteriaBuilder.or(); //Creates a false query
}
}
@Override
protected <X, Y> Predicate applyFilters(QueryContext<X, Y> queryContext) {
List<Predicate> predicates = new ArrayList<>();

50
dmp-backend/core/src/main/java/eu/eudat/query/ReferenceQuery.java
View File

@ -1,12 +1,21 @@
package eu.eudat.query;
import eu.eudat.authorization.AuthorizationFlags;
import eu.eudat.authorization.Permission;
import eu.eudat.commons.enums.DmpAccessType;
import eu.eudat.commons.enums.DmpStatus;
import eu.eudat.commons.enums.IsActive;
import eu.eudat.commons.enums.ReferenceSourceType;
import eu.eudat.commons.scope.user.UserScope;
import eu.eudat.data.DmpEntity;
import eu.eudat.data.DmpReferenceEntity;
import eu.eudat.data.DmpUserEntity;
import eu.eudat.data.ReferenceEntity;
import eu.eudat.model.PublicReference;
import eu.eudat.model.Reference;
import eu.eudat.query.utils.BuildSubQueryInput;
import eu.eudat.query.utils.QueryUtilsService;
import gr.cite.commons.web.authz.service.AuthorizationService;
import gr.cite.tools.data.query.FieldResolver;
import gr.cite.tools.data.query.QueryBase;
import gr.cite.tools.data.query.QueryContext;
@ -163,9 +172,16 @@ public class ReferenceQuery extends QueryBase<ReferenceEntity> {
this.authorize = values;
return this;
}
private final UserScope userScope;
private final AuthorizationService authService;
private final QueryUtilsService queryUtilsService;
public ReferenceQuery(
) {
UserScope userScope, AuthorizationService authService, QueryUtilsService queryUtilsService) {
this.userScope = userScope;
this.authService = authService;
this.queryUtilsService = queryUtilsService;
}
@Override
@ -178,6 +194,38 @@ public class ReferenceQuery extends QueryBase<ReferenceEntity> {
return this.isEmpty(this.ids) || this.isEmpty(this.isActives) || this.isEmpty(this.sources) ||this.isEmpty(this.excludedIds) || this.isEmpty(this.typeIds) || this.isEmpty(this.referenceSourceTypes)|| this.isFalseQuery(this.dmpReferenceQuery);
}
@Override
protected <X, Y> Predicate applyAuthZ(QueryContext<X, Y> queryContext) {
if (this.authorize.contains(AuthorizationFlags.None)) return null;
if (this.authorize.contains(AuthorizationFlags.Permission) && this.authService.authorize(Permission.BrowseReference)) return null;
UUID userId;
boolean usePublic = this.authorize.contains(AuthorizationFlags.Public);
if (this.authorize.contains(AuthorizationFlags.DmpAssociated)) userId = this.userScope.getUserIdSafe();
else userId = null;
List<Predicate> predicates = new ArrayList<>();
if (userId != null || usePublic ) {
predicates.add(queryContext.CriteriaBuilder.or(
queryContext.CriteriaBuilder.isNull(queryContext.Root.get(ReferenceEntity._createdById)),
userId != null ? queryContext.CriteriaBuilder.equal(queryContext.Root.get(ReferenceEntity._createdById), userId) : queryContext.CriteriaBuilder.or(), //Creates a false query
userId != null ? queryContext.CriteriaBuilder.in(queryContext.Root.get(ReferenceEntity._id)).value(queryUtilsService.buildSubQuery(new BuildSubQueryInput<>(new BuildSubQueryInput.Builder<>(DmpReferenceEntity.class, UUID.class)
.query(queryContext.Query)
.criteriaBuilder(queryContext.CriteriaBuilder)
.keyPathFunc((subQueryRoot) -> subQueryRoot.get(DmpReferenceEntity._referenceId))
.filterFunc((subQueryRoot, cb) ->
cb.in(subQueryRoot.get(DmpReferenceEntity._dmpId)).value(queryUtilsService.buildDmpAuthZSubQuery(queryContext.Query, queryContext.CriteriaBuilder, userId, usePublic))
)
))) : queryContext.CriteriaBuilder.or() //Creates a false query
));
}
if (!predicates.isEmpty()) {
Predicate[] predicatesArray = predicates.toArray(new Predicate[0]);
return queryContext.CriteriaBuilder.and(predicatesArray);
} else {
return queryContext.CriteriaBuilder.or(); //Creates a false query
}
}
@Override
protected <X, Y> Predicate applyFilters(QueryContext<X, Y> queryContext) {
List<Predicate> predicates = new ArrayList<>();

17
dmp-backend/core/src/main/java/eu/eudat/query/UserQuery.java
View File

@ -150,11 +150,24 @@ public class UserQuery extends QueryBase<UserEntity> {
if (this.authorize.contains(AuthorizationFlags.Permission) && this.authService.authorize(Permission.BrowseUser)) return null;
UUID userId;
if (this.authorize.contains(AuthorizationFlags.Owner)) userId = this.userScope.getUserIdSafe();
if (this.authorize.contains(AuthorizationFlags.Public)) userId = this.userScope.getUserIdSafe();
else userId = null;
List<Predicate> predicates = new ArrayList<>();
if (userId != null) {
predicates.add(queryContext.CriteriaBuilder.in(queryContext.Root.get(UserEntity._id)).value(userId));
boolean usePublic = this.authorize.contains(AuthorizationFlags.Public);
if (userId != null || usePublic) {
UUID finalUserId = userId;
predicates.add(queryContext.CriteriaBuilder.or(
userId != null ? queryContext.CriteriaBuilder.in(queryContext.Root.get(UserEntity._id)).value(userId) : queryContext.CriteriaBuilder.or(), //Creates a false query
queryContext.CriteriaBuilder.in(queryContext.Root.get(ReferenceEntity._id)).value(queryUtilsService.buildSubQuery(new BuildSubQueryInput<>(new BuildSubQueryInput.Builder<>(DmpUserEntity.class, UUID.class)
.query(queryContext.Query)
.criteriaBuilder(queryContext.CriteriaBuilder)
.keyPathFunc((subQueryRoot) -> subQueryRoot.get(DmpUserEntity._userId))
.filterFunc((subQueryRoot, cb) ->
cb.in(subQueryRoot.get(DmpUserEntity._dmpId)).value(queryUtilsService.buildDmpAuthZSubQuery(queryContext.Query, queryContext.CriteriaBuilder, finalUserId, usePublic))
)
)))
));
}
if (!predicates.isEmpty()) {
Predicate[] predicatesArray = predicates.toArray(new Predicate[0]);

3
dmp-backend/core/src/main/java/eu/eudat/query/utils/QueryUtilsServiceImpl.java
View File

@ -52,7 +52,8 @@ public class QueryUtilsServiceImpl implements QueryUtilsService {
.filterFunc((subQueryRoot, cb) -> cb.or(
usePublic ? cb.and(
cb.equal(subQueryRoot.get(DescriptionEntity._status), DescriptionStatus.Finalized),
cb.equal(subQueryRoot.get(DescriptionEntity._isActive), IsActive.Active)
cb.equal(subQueryRoot.get(DescriptionEntity._isActive), IsActive.Active),
cb.in(subQueryRoot.get(DescriptionEntity._dmpId)).value(this.buildDmpAuthZSubQuery(query, criteriaBuilder, userId, usePublic))
): cb.or(), //Creates a false query
userId != null ? cb.equal(subQueryRoot.get(DescriptionEntity._createdById), userId) : cb.or() //Creates a false query
)

13
dmp-backend/core/src/main/java/eu/eudat/service/dashborad/DashboardServiceImpl.java
View File

@ -3,14 +3,10 @@ package eu.eudat.service.dashborad;
import eu.eudat.authorization.AuthorizationFlags;
import eu.eudat.authorization.OwnedResource;
import eu.eudat.authorization.Permission;
import eu.eudat.commons.JsonHandlingService;
import eu.eudat.commons.XmlHandlingService;
import eu.eudat.commons.enums.*;
import eu.eudat.commons.scope.user.UserScope;
import eu.eudat.commons.types.dashborad.RecentActivityItemEntity;
import eu.eudat.convention.ConventionService;
import eu.eudat.errorcode.ErrorThesaurusProperties;
import eu.eudat.event.EventBroker;
import eu.eudat.model.*;
import eu.eudat.model.builder.PublicReferenceTypeBuilder;
import eu.eudat.model.builder.RecentActivityItemBuilder;
@ -21,15 +17,12 @@ import eu.eudat.query.lookup.DmpLookup;
import eu.eudat.service.elastic.ElasticQueryHelperService;
import gr.cite.commons.web.authz.service.AuthorizationService;
import gr.cite.tools.data.builder.BuilderFactory;
import gr.cite.tools.data.deleter.DeleterFactory;
import gr.cite.tools.data.query.QueryFactory;
import gr.cite.tools.fieldset.BaseFieldSet;
import gr.cite.tools.logging.LoggerService;
import gr.cite.tools.logging.MapLogEntry;
import jakarta.persistence.EntityManager;
import org.slf4j.LoggerFactory;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.context.MessageSource;
import org.springframework.stereotype.Service;
import javax.management.InvalidApplicationException;
@ -76,14 +69,14 @@ public class DashboardServiceImpl implements DashboardService {
List<RecentActivityItemEntity> recentActivityItemEntities = new ArrayList<>();
DescriptionLookup descriptionLookup = model.asDescriptionLookup();
descriptionLookup.getPage().setOffset(0);
QueryResult<Description> descriptions = this.elasticQueryHelperService.collect(descriptionLookup, AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic, new BaseFieldSet().ensure(Description._id).ensure(Description._updatedAt).ensure(Description._status).ensure(Description._label));
QueryResult<Description> descriptions = this.elasticQueryHelperService.collect(descriptionLookup, AuthorizationFlags.OwnerOrDmpAssociatedOrPermission, new BaseFieldSet().ensure(Description._id).ensure(Description._updatedAt).ensure(Description._status).ensure(Description._label));
if (!this.conventionService.isListNullOrEmpty(descriptions.getItems())) {
for (Description description : descriptions.getItems()) recentActivityItemEntities.add(new RecentActivityItemEntity(RecentActivityItemType.Description, description.getId(), description.getUpdatedAt(), description.getLabel(), description.getStatus().getValue()));
}
DmpLookup dmpLookup = model.asDmpLookup();
dmpLookup.getPage().setOffset(0);
QueryResult<Dmp> dmps = this.elasticQueryHelperService.collect(dmpLookup, AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic, new BaseFieldSet().ensure(Dmp._id).ensure(Dmp._updatedAt).ensure(Dmp._label).ensure(Dmp._status));
QueryResult<Dmp> dmps = this.elasticQueryHelperService.collect(dmpLookup, AuthorizationFlags.OwnerOrDmpAssociatedOrPermission, new BaseFieldSet().ensure(Dmp._id).ensure(Dmp._updatedAt).ensure(Dmp._label).ensure(Dmp._status));
if (!this.conventionService.isListNullOrEmpty(dmps.getItems())) {
for (Dmp dmp : dmps.getItems()) recentActivityItemEntities.add(new RecentActivityItemEntity(RecentActivityItemType.Dmp, dmp.getId(), dmp.getUpdatedAt(), dmp.getLabel(), dmp.getStatus().getValue()));
}
@ -102,7 +95,7 @@ public class DashboardServiceImpl implements DashboardService {
if (model.getPage() != null){
recentActivityItemEntities = recentActivityItemEntities.stream().skip(model.getPage().getOffset()).limit(model.getPage().getSize()).toList();
}
return this.builderFactory.builder(RecentActivityItemBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(BaseFieldSet.build(model.getProject()), recentActivityItemEntities);
return this.builderFactory.builder(RecentActivityItemBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(BaseFieldSet.build(model.getProject()), recentActivityItemEntities);
}
@Override

87
dmp-backend/core/src/main/java/eu/eudat/service/deposit/DepositServiceImpl.java
View File

@ -4,18 +4,26 @@ import eu.eudat.authorization.AuthorizationFlags;
import eu.eudat.authorization.Permission;
import eu.eudat.commonmodels.models.FileEnvelopeModel;
import eu.eudat.commonmodels.models.dmp.DmpModel;
import eu.eudat.commons.enums.StorageType;
import eu.eudat.commons.scope.user.UserScope;
import eu.eudat.configurations.deposit.DepositProperties;
import eu.eudat.convention.ConventionService;
import eu.eudat.data.DmpEntity;
import eu.eudat.depositinterface.repository.DepositClient;
import eu.eudat.depositinterface.repository.DepositConfiguration;
import eu.eudat.model.EntityDoi;
import eu.eudat.model.StorageFile;
import eu.eudat.model.builder.commonmodels.DepositConfigurationBuilder;
import eu.eudat.model.builder.commonmodels.dmp.DmpCommonModelBuilder;
import eu.eudat.model.persist.StorageFilePersist;
import eu.eudat.model.persist.deposit.DepositAuthenticateRequest;
import eu.eudat.model.persist.deposit.DepositRequest;
import eu.eudat.model.persist.EntityDoiPersist;
import eu.eudat.query.DmpQuery;
import eu.eudat.service.entitydoi.EntityDoiService;
import eu.eudat.service.storage.StorageFileProperties;
import eu.eudat.service.storage.StorageFileService;
import eu.eudat.service.transformer.FileTransformerService;
import gr.cite.commons.web.oidc.filter.webflux.TokenExchangeCacheService;
import gr.cite.commons.web.authz.service.AuthorizationService;
import gr.cite.commons.web.oidc.filter.webflux.TokenExchangeFilterFunction;
@ -23,7 +31,10 @@ import gr.cite.commons.web.oidc.filter.webflux.TokenExchangeModel;
import gr.cite.tools.data.builder.BuilderFactory;
import gr.cite.tools.data.query.QueryFactory;
import gr.cite.tools.exception.MyNotFoundException;
import gr.cite.tools.fieldset.BaseFieldSet;
import gr.cite.tools.fieldset.FieldSet;
import gr.cite.tools.validation.ValidatorFactory;
import org.apache.commons.io.FilenameUtils;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.springframework.beans.factory.annotation.Autowired;
@ -32,11 +43,11 @@ import org.springframework.context.i18n.LocaleContextHolder;
import org.springframework.stereotype.Service;
import org.springframework.web.reactive.function.client.WebClient;
import java.io.IOException;
import java.net.URI;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.net.URLConnection;
import java.time.Duration;
import java.util.*;
@Service
public class DepositServiceImpl implements DepositService {
@ -52,7 +63,12 @@ public class DepositServiceImpl implements DepositService {
private final MessageSource messageSource;
private final BuilderFactory builderFactory;
private final DepositConfigurationCacheService depositConfigurationCacheService;
private final FileTransformerService fileTransformerService;
private final StorageFileService storageFileService;
private final UserScope userScope;
private final ValidatorFactory validatorFactory;
private final StorageFileProperties storageFileProperties;
private final ConventionService conventionService;
@Autowired
public DepositServiceImpl(DepositProperties depositProperties,
TokenExchangeCacheService tokenExchangeCacheService,
@ -61,7 +77,7 @@ public class DepositServiceImpl implements DepositService {
EntityDoiService doiService,
QueryFactory queryFactory,
MessageSource messageSource,
BuilderFactory builderFactory, DepositConfigurationCacheService depositConfigurationCacheService) {
BuilderFactory builderFactory, DepositConfigurationCacheService depositConfigurationCacheService, FileTransformerService fileTransformerService, StorageFileService storageFileService, UserScope userScope, ValidatorFactory validatorFactory, StorageFileProperties storageFileProperties, ConventionService conventionService) {
this.depositProperties = depositProperties;
this.tokenExchangeCacheService = tokenExchangeCacheService;
this.authorizationService = authorizationService;
@ -71,6 +87,12 @@ public class DepositServiceImpl implements DepositService {
this.messageSource = messageSource;
this.builderFactory = builderFactory;
this.depositConfigurationCacheService = depositConfigurationCacheService;
this.fileTransformerService = fileTransformerService;
this.storageFileService = storageFileService;
this.userScope = userScope;
this.validatorFactory = validatorFactory;
this.storageFileProperties = storageFileProperties;
this.conventionService = conventionService;
this.clients = new HashMap<>();
}
@ -130,29 +152,31 @@ public class DepositServiceImpl implements DepositService {
//GK: Forth make the required files to be uploaded with the deposit
//TODO: Properly create required files
FileEnvelopeModel docEnvelope = new FileEnvelopeModel();
DepositProperties.DepositSource source = depositProperties.getSources().stream().filter(depositSource -> depositSource.getRepositoryId().equals(dmpDepositModel.getRepositoryId())).findFirst().orElse(null);
if (source == null) throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{dmpDepositModel.getRepositoryId(), DepositProperties.DepositSource.class.getSimpleName()}, LocaleContextHolder.getLocale()));
eu.eudat.model.file.FileEnvelope pdfFile = this.fileTransformerService.exportDmp(dmpEntity.getId(), source.getPdfTransformerId(),"pdf");
eu.eudat.model.file.FileEnvelope rda = this.fileTransformerService.exportDmp(dmpEntity.getId(), source.getRdaTransformerId(),"json");
FileEnvelopeModel pdfEnvelope = new FileEnvelopeModel();
FileEnvelopeModel jsonEnvelope = new FileEnvelopeModel();
FileEnvelopeModel zip = new FileEnvelopeModel();
//TODO: Create Files
// File zip = new File(environment.getProperty("temp.temp") + UUID.randomUUID() + ".zip");
// try {
// docEnvelope.setFilename("test.docx");
// docEnvelope.setFile(this.storageFileService.getH2020TemplateFile());
// File pdfFile = PDFUtils.convertToPDF(docEnvelope, environment);
// pdfEnvelope.setFilename("test.pdf");
// pdfEnvelope.setFile(pdfFile);
// File jsonFile = new File(this.environment.getProperty("temp.temp") + UUID.randomUUID() + ".json");
// jsonEnvelope.setFilename("test.json");
// jsonEnvelope.setFile(jsonFile);
//
// } catch (IOException e) {
// logger.error(e.getMessage(), e);
// }
pdfEnvelope.setFilename(pdfFile.getFilename());
jsonEnvelope.setMimeType("application/pdf");
jsonEnvelope.setFilename(rda.getFilename());
jsonEnvelope.setMimeType("application/json");
if (!depositClient.getConfiguration().isUseSharedStorage()){
pdfEnvelope.setFile(pdfFile.getFile());
jsonEnvelope.setFile(rda.getFile());
} else {
pdfEnvelope.setFileRef(this.addFileToSharedStorage(pdfFile));
jsonEnvelope.setFileRef(this.addFileToSharedStorage(rda));
}
//GK: Fifth Transform them to the DepositModel
DmpModel depositModel = this.builderFactory.builder(DmpCommonModelBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic)
.setRepositoryId(dmpDepositModel.getRepositoryId()).setPdfFile(pdfEnvelope).setRdaJsonFile(jsonEnvelope).setSupportingFilesZip(zip).build(dmpEntity);
DmpModel depositModel = this.builderFactory.builder(DmpCommonModelBuilder.class).useSharedStorage(depositClient.getConfiguration().isUseSharedStorage()).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission)
.setRepositoryId(dmpDepositModel.getRepositoryId()).setPdfFile(pdfEnvelope).setRdaJsonFile(jsonEnvelope).build(dmpEntity);
//GK: Sixth Perform the deposit
String doi = depositClient.deposit(depositModel, dmpDepositModel.getAccessToken());
@ -166,6 +190,19 @@ public class DepositServiceImpl implements DepositService {
return doiService.persist(doiPersist, dmpDepositModel.getProject());
}
private String addFileToSharedStorage(eu.eudat.model.file.FileEnvelope file) throws IOException {
StorageFilePersist storageFilePersist = new StorageFilePersist();
storageFilePersist.setName(FilenameUtils.removeExtension(file.getFilename()));
storageFilePersist.setExtension(FilenameUtils.getExtension(file.getFilename()));
storageFilePersist.setMimeType(URLConnection.guessContentTypeFromName(file.getFilename()));
storageFilePersist.setOwnerId(this.userScope.getUserIdSafe());
storageFilePersist.setStorageType(StorageType.Temp);
storageFilePersist.setLifetime(Duration.ofSeconds(this.storageFileProperties.getTempStoreLifetimeSeconds())); //TODO
this.validatorFactory.validator(StorageFilePersist.StorageFilePersistValidator.class).validateForce(storageFilePersist);
StorageFile persisted = this.storageFileService.persistBytes(storageFilePersist, file.getFile(), new BaseFieldSet(StorageFile._id, StorageFile._fileRef));
return persisted.getFileRef();
}
@Override
public String getLogo(String repositoryId) {
this.authorizationService.authorizeForce(Permission.BrowseDeposit);

7
dmp-backend/core/src/main/java/eu/eudat/service/description/DescriptionServiceImpl.java
View File

@ -20,7 +20,6 @@ import eu.eudat.data.*;
import eu.eudat.errorcode.ErrorThesaurusProperties;
import eu.eudat.event.DescriptionTouchedEvent;
import eu.eudat.event.EventBroker;
import eu.eudat.integrationevent.outbox.descriptiontouched.DescriptionTouchedIntegrationEvent;
import eu.eudat.integrationevent.outbox.descriptiontouched.DescriptionTouchedIntegrationEventHandler;
import eu.eudat.integrationevent.outbox.notification.NotifyIntegrationEvent;
import eu.eudat.integrationevent.outbox.notification.NotifyIntegrationEventHandler;
@ -208,7 +207,7 @@ public class DescriptionServiceImpl implements DescriptionService {
this.descriptionTouchedIntegrationEventHandler.handle(DescriptionTouchedIntegrationEventHandler.buildEventFromPersistModel(model));
this.elasticService.persistDescription(data);
return this.builderFactory.builder(DescriptionBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(BaseFieldSet.build(fields, Description._id), data);
return this.builderFactory.builder(DescriptionBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(BaseFieldSet.build(fields, Description._id), data);
}
private void sendNotification(DescriptionEntity description) throws InvalidApplicationException {
@ -358,7 +357,7 @@ public class DescriptionServiceImpl implements DescriptionService {
this.elasticService.persistDescription(data);
this.eventBroker.emit(new DescriptionTouchedEvent(data.getId()));
}
return this.builderFactory.builder(DescriptionBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(BaseFieldSet.build(fields, Description._id), data);
return this.builderFactory.builder(DescriptionBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(BaseFieldSet.build(fields, Description._id), data);
}
private @NotNull PropertyDefinitionEntity buildPropertyDefinitionEntity(PropertyDefinitionPersist persist, eu.eudat.commons.types.descriptiontemplate.DefinitionEntity definition, Map<String, List<UUID>> fieldToReferenceMap){
@ -746,7 +745,7 @@ public class DescriptionServiceImpl implements DescriptionService {
public StorageFile uploadFieldFile(DescriptionFieldFilePersist model, MultipartFile file, FieldSet fields) throws IOException {
this.authorizationService.authorizeForce(Permission.EditDescription);
DescriptionTemplateEntity descriptionTemplate = this.queryFactory.query(DescriptionTemplateQuery.class).ids(model.getDescriptionTemplateId()).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).first();
DescriptionTemplateEntity descriptionTemplate = this.queryFactory.query(DescriptionTemplateQuery.class).ids(model.getDescriptionTemplateId()).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).first();
if (descriptionTemplate == null) throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{model.getDescriptionTemplateId(), DescriptionTemplate.class.getSimpleName()}, LocaleContextHolder.getLocale()));
eu.eudat.commons.types.descriptiontemplate.DefinitionEntity definition = this.xmlHandlingService.fromXmlSafe(eu.eudat.commons.types.descriptiontemplate.DefinitionEntity.class, descriptionTemplate.getDefinition());

14
dmp-backend/core/src/main/java/eu/eudat/service/descriptiontemplate/DescriptionTemplateServiceImpl.java
View File

@ -202,7 +202,7 @@ public class DescriptionTemplateServiceImpl implements DescriptionTemplateServic
this.entityManager.persist(data);
this.persistUsers(data.getId(), model.getUsers());
if (!isUpdate)
if (this.conventionService.isListNullOrEmpty(model.getUsers()))
this.addOwner(data);
this.entityManager.flush();
@ -211,7 +211,7 @@ public class DescriptionTemplateServiceImpl implements DescriptionTemplateServic
this.entityManager.flush();
return this.builderFactory.builder(DescriptionTemplateBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(BaseFieldSet.build(fields, DescriptionTemplate._id), data);
return this.builderFactory.builder(DescriptionTemplateBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(BaseFieldSet.build(fields, DescriptionTemplate._id), data);
}
private void updateVersionStatusAndSave(DescriptionTemplateEntity data, DescriptionTemplateStatus previousStatus, DescriptionTemplateStatus newStatus) {
@ -260,9 +260,9 @@ public class DescriptionTemplateServiceImpl implements DescriptionTemplateServic
this.sendDescriptionTemplateInvitationEvent(data, NotificationContactType.EMAIL);
this.sendDescriptionTemplateInvitationEvent(data, NotificationContactType.IN_APP);
}
updatedCreatedIds.add(data.getId());
updatedCreatedIds.add(data.getUserId());
}
List<UserDescriptionTemplateEntity> toDelete = items.stream().filter(x -> updatedCreatedIds.stream().noneMatch(y -> y.equals(x.getId()))).collect(Collectors.toList());
List<UserDescriptionTemplateEntity> toDelete = items.stream().filter(x -> updatedCreatedIds.stream().noneMatch(y -> y.equals(x.getUserId()))).collect(Collectors.toList());
this.deleterFactory.deleter(UserDescriptionTemplateDeleter.class).delete(toDelete);
}
@ -470,8 +470,8 @@ public class DescriptionTemplateServiceImpl implements DescriptionTemplateServic
this.authorizationService.authorizeForce(Permission.CloneDescriptionTemplate);
DescriptionTemplateQuery query = this.queryFactory.query(DescriptionTemplateQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).ids(id);
DescriptionTemplate model = this.builderFactory.builder(DescriptionTemplateBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(fields, query.firstAs(fields));
DescriptionTemplateQuery query = this.queryFactory.query(DescriptionTemplateQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).ids(id);
DescriptionTemplate model = this.builderFactory.builder(DescriptionTemplateBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(fields, query.firstAs(fields));
if (model == null)
throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{id, DescriptionTemplate.class.getSimpleName()}, LocaleContextHolder.getLocale()));
@ -603,7 +603,7 @@ public class DescriptionTemplateServiceImpl implements DescriptionTemplateServic
this.entityManager.flush();
return this.builderFactory.builder(DescriptionTemplateBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(BaseFieldSet.build(fields, DescriptionTemplate._id), data);
return this.builderFactory.builder(DescriptionTemplateBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(BaseFieldSet.build(fields, DescriptionTemplate._id), data);
}
//endregion

2
dmp-backend/core/src/main/java/eu/eudat/service/descriptiontemplatetype/DescriptionTemplateTypeServiceImpl.java
View File

@ -106,7 +106,7 @@ public class DescriptionTemplateTypeServiceImpl implements DescriptionTemplateTy
this.entityManager.flush();
this.eventBroker.emit(new DescriptionTemplateTypeTouchedEvent(data.getId()));
return this.builderFactory.builder(DescriptionTemplateTypeBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(BaseFieldSet.build(fields, DescriptionTemplateType._id), data);
return this.builderFactory.builder(DescriptionTemplateTypeBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(BaseFieldSet.build(fields, DescriptionTemplateType._id), data);
}
public void deleteAndSave(UUID id) throws MyForbiddenException, InvalidApplicationException {

2
dmp-backend/core/src/main/java/eu/eudat/service/dmp/DmpService.java
View File

@ -34,7 +34,7 @@ public interface DmpService {
List<DmpUser> assignUsers(UUID dmp, List<DmpUserPersist> model, FieldSet fields) throws InvalidApplicationException, IOException;
Dmp removeUser(DmpUserRemovePersist model, FieldSet fields) throws InvalidApplicationException, IOException;
ResponseEntity<byte[]> export(UUID id, String exportType) throws InvalidApplicationException, IOException;
ResponseEntity<byte[]> export(UUID id, String transformerId, String exportType) throws InvalidApplicationException, IOException;
void inviteUsers(UUID id, List<DmpUserPersist> users) throws InvalidApplicationException, JAXBException, IOException;

73
dmp-backend/core/src/main/java/eu/eudat/service/dmp/DmpServiceImpl.java
View File

@ -23,6 +23,7 @@ import eu.eudat.data.*;
import eu.eudat.errorcode.ErrorThesaurusProperties;
import eu.eudat.event.DmpTouchedEvent;
import eu.eudat.event.EventBroker;
import eu.eudat.integrationevent.outbox.annotationentitytouch.AnnotationEntityTouchedIntegrationEventHandler;
import eu.eudat.integrationevent.outbox.dmptouched.DmpTouchedIntegrationEventHandler;
import eu.eudat.integrationevent.outbox.notification.NotifyIntegrationEvent;
import eu.eudat.integrationevent.outbox.notification.NotifyIntegrationEventHandler;
@ -74,7 +75,6 @@ import javax.management.InvalidApplicationException;
import javax.xml.parsers.ParserConfigurationException;
import javax.xml.transform.TransformerException;
import java.io.IOException;
import java.nio.file.Files;
import java.time.Instant;
import java.util.*;
import java.util.stream.Collectors;
@ -123,6 +123,8 @@ public class DmpServiceImpl implements DmpService {
private final DmpTouchedIntegrationEventHandler dmpTouchedIntegrationEventHandler;
private final AnnotationEntityTouchedIntegrationEventHandler annotationEntityTouchedIntegrationEventHandler;
@Autowired
public DmpServiceImpl(
EntityManager entityManager,
@ -143,7 +145,9 @@ public class DmpServiceImpl implements DmpService {
ActionConfirmationService actionConfirmationService,
FileTransformerService fileTransformerService,
ValidatorFactory validatorFactory,
ElasticService elasticService, DmpTouchedIntegrationEventHandler dmpTouchedIntegrationEventHandler) {
ElasticService elasticService,
DmpTouchedIntegrationEventHandler dmpTouchedIntegrationEventHandler,
AnnotationEntityTouchedIntegrationEventHandler annotationEntityTouchedIntegrationEventHandler) {
this.entityManager = entityManager;
this.authorizationService = authorizationService;
this.deleterFactory = deleterFactory;
@ -164,6 +168,7 @@ public class DmpServiceImpl implements DmpService {
this.validatorFactory = validatorFactory;
this.elasticService = elasticService;
this.dmpTouchedIntegrationEventHandler = dmpTouchedIntegrationEventHandler;
this.annotationEntityTouchedIntegrationEventHandler = annotationEntityTouchedIntegrationEventHandler;
}
public Dmp persist(DmpPersist model, FieldSet fields) throws MyForbiddenException, MyValidationException, MyApplicationException, MyNotFoundException, InvalidApplicationException, JAXBException, IOException {
@ -184,15 +189,33 @@ public class DmpServiceImpl implements DmpService {
this.dmpTouchedIntegrationEventHandler.handle(DmpTouchedIntegrationEventHandler.buildEventFromPersistModel(model));
this.sendNotification(data);
this.annotationEntityTouchedIntegrationEventHandler.handle(AnnotationEntityTouchedIntegrationEventHandler.buildEventFromPersistModel(model));
this.elasticService.persistDmp(data);
this.sendNotification(data);
if (!this.conventionService.isListNullOrEmpty(model.getUsers())){
this.inviteUsers(data.getId(), model.getUsers());
}else{
this.assignUsers(data.getId(), new ArrayList<>(), null);
this.addOwner(data);
}
return this.builderFactory.builder(DmpBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(BaseFieldSet.build(fields, Dmp._id, Dmp._hash), data);
this.elasticService.persistDmp(data);
return this.builderFactory.builder(DmpBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(BaseFieldSet.build(fields, Dmp._id, Dmp._hash), data);
}
private void addOwner(DmpEntity dmpEntity) throws InvalidApplicationException {
DmpUserEntity data = new DmpUserEntity();
data.setId(UUID.randomUUID());
data.setIsActive(IsActive.Active);
data.setCreatedAt(Instant.now());
data.setUpdatedAt(Instant.now());
data.setRole(DmpUserRole.Owner);
data.setUserId(userScope.getUserId());
data.setDmpId(dmpEntity.getId());
this.entityManager.persist(data);
}
private void sendNotification(DmpEntity dmp) throws InvalidApplicationException {
@ -368,7 +391,7 @@ public class DmpServiceImpl implements DmpService {
public Dmp buildClone(CloneDmpPersist model, FieldSet fields) throws MyForbiddenException, MyValidationException, MyApplicationException, MyNotFoundException, IOException, InvalidApplicationException {
this.authorizationService.authorizeForce(Permission.CloneDmp);
DmpEntity existingDmpEntity = this.queryFactory.query(DmpQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).ids(model.getId()).firstAs(fields);
DmpEntity existingDmpEntity = this.queryFactory.query(DmpQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).ids(model.getId()).firstAs(fields);
if (!this.conventionService.isValidGuid(model.getId()) || existingDmpEntity == null)
throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{model.getId(), Dmp.class.getSimpleName()}, LocaleContextHolder.getLocale()));
@ -493,7 +516,7 @@ public class DmpServiceImpl implements DmpService {
.collect();
this.elasticService.persistDmp(dmpEntity);
return this.builderFactory.builder(DmpUserBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(BaseFieldSet.build(fieldSet, DmpUser._id, DmpUser._hash), persisted);
return this.builderFactory.builder(DmpUserBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(BaseFieldSet.build(fieldSet, DmpUser._id, DmpUser._hash), persisted);
}
@Override
@ -514,14 +537,14 @@ public class DmpServiceImpl implements DmpService {
if (dmpEntity == null) throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{model.getDmpId(), Dmp.class.getSimpleName()}, LocaleContextHolder.getLocale()));
this.elasticService.persistDmp(dmpEntity);
return this.builderFactory.builder(DmpBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(BaseFieldSet.build(fields, Dmp._id, Dmp._hash), data);
return this.builderFactory.builder(DmpBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(BaseFieldSet.build(fields, Dmp._id, Dmp._hash), data);
}
@Override
public ResponseEntity<byte[]> export(UUID id, String exportType) throws InvalidApplicationException, IOException {
public ResponseEntity<byte[]> export(UUID id, String transformerId, String exportType) throws InvalidApplicationException, IOException {
HttpHeaders headers = new HttpHeaders();
FileEnvelope fileEnvelope = this.fileTransformerService.exportDmp(id, exportType);
FileEnvelope fileEnvelope = this.fileTransformerService.exportDmp(id, transformerId, exportType);
headers.add("Content-Disposition", "attachment;filename=" + fileEnvelope.getFilename());
byte[] data = fileEnvelope.getFile();
headers.setContentType(MediaType.APPLICATION_OCTET_STREAM);
@ -532,7 +555,6 @@ public class DmpServiceImpl implements DmpService {
Boolean isUpdate = this.conventionService.isValidGuid(model.getId());
DmpEntity data;
DmpUserEntity dmpUserEntity = new DmpUserEntity();
if (isUpdate) {
data = this.entityManager.find(DmpEntity.class, model.getId());
if (data == null) throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{model.getId(), Dmp.class.getSimpleName()}, LocaleContextHolder.getLocale()));
@ -553,17 +575,10 @@ public class DmpServiceImpl implements DmpService {
data.setBlueprintId(model.getBlueprint());
data.setIsActive(IsActive.Active);
data.setCreatedAt(Instant.now());
dmpUserEntity.setId(UUID.randomUUID());
dmpUserEntity.setDmpId(data.getId());
dmpUserEntity.setUserId(userScope.getUserId());
dmpUserEntity.setRole(DmpUserRole.Owner);
dmpUserEntity.setCreatedAt(Instant.now());
dmpUserEntity.setUpdatedAt(Instant.now());
dmpUserEntity.setIsActive(IsActive.Active);
}
data.setLabel(model.getLabel());
data.setLanguage(model.getLanguage());
data.setProperties(this.jsonHandlingService.toJson(this.buildDmpPropertiesEntity(model.getProperties())));
data.setDescription(model.getDescription());
data.setAccessType(model.getAccessType());
@ -572,7 +587,6 @@ public class DmpServiceImpl implements DmpService {
this.entityManager.merge(data);
else {
this.entityManager.persist(data);
this.entityManager.persist(dmpUserEntity);
}
this.entityManager.flush();
@ -796,6 +810,7 @@ public class DmpServiceImpl implements DmpService {
throw new InvalidApplicationException("Dmp does not exist!");
}
List<DmpUserPersist> usersToAssign = new ArrayList<>();
for (DmpUserPersist user :users) {
UUID userId = null;
if (user.getUser() != null){
@ -808,7 +823,7 @@ public class DmpServiceImpl implements DmpService {
}
if (userId != null){
user.setUser(userId);
this.assignUsers(id, List.of(user), null);
usersToAssign.add(user);
if (this.userScope.getUserId() != userId){
this.sendDmpInvitationExistingUser(user.getUser(), dmp, user.getRole());
}
@ -817,6 +832,7 @@ public class DmpServiceImpl implements DmpService {
}
}
if(!usersToAssign.isEmpty()) this.assignUsers(id, usersToAssign, null);
}
private void sendDmpInvitationExistingUser(UUID userId, DmpEntity dmp, DmpUserRole role) throws InvalidApplicationException {
@ -900,10 +916,17 @@ public class DmpServiceImpl implements DmpService {
}
DmpInvitationEntity dmpInvitation = this.xmlHandlingService.fromXmlSafe(DmpInvitationEntity.class, action.getData());
DmpUserPersist model = new DmpUserPersist();
model.setUser(this.userScope.getUserIdSafe());
model.setRole(dmpInvitation.getRole());
this.assignUsers(dmpInvitation.getDmpId(), List.of(model), null);
DmpUserEntity data = new DmpUserEntity();
data.setId(UUID.randomUUID());
data.setIsActive(IsActive.Active);
data.setCreatedAt(Instant.now());
data.setUpdatedAt(Instant.now());
data.setRole(dmpInvitation.getRole());
data.setUserId(this.userScope.getUserIdSafe());
data.setDmpId(dmpInvitation.getDmpId());
this.entityManager.persist(data);
action.setStatus(ActionConfirmationStatus.Accepted);
this.entityManager.merge(action);
}

8
dmp-backend/core/src/main/java/eu/eudat/service/dmpblueprint/DmpBlueprintServiceImpl.java
View File

@ -159,7 +159,7 @@ public class DmpBlueprintServiceImpl implements DmpBlueprintService {
this.entityManager.flush();
return this.builderFactory.builder(DmpBlueprintBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(BaseFieldSet.build(fields, DmpBlueprint._id), data);
return this.builderFactory.builder(DmpBlueprintBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(BaseFieldSet.build(fields, DmpBlueprint._id), data);
}
private void updateVersionStatusAndSave(DmpBlueprintEntity data, DmpBlueprintStatus previousStatus, DmpBlueprintStatus newStatus) {
@ -336,8 +336,8 @@ public class DmpBlueprintServiceImpl implements DmpBlueprintService {
this.authorizationService.authorizeForce(Permission.CloneDmpBlueprint);
DmpBlueprintQuery query = this.queryFactory.query(DmpBlueprintQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).ids(id);
DmpBlueprint model = this.builderFactory.builder(DmpBlueprintBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(fields, query.firstAs(fields));
DmpBlueprintQuery query = this.queryFactory.query(DmpBlueprintQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).ids(id);
DmpBlueprint model = this.builderFactory.builder(DmpBlueprintBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(fields, query.firstAs(fields));
if (model == null)
throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{id, DmpBlueprint.class.getSimpleName()}, LocaleContextHolder.getLocale()));
@ -435,7 +435,7 @@ public class DmpBlueprintServiceImpl implements DmpBlueprintService {
this.entityManager.flush();
return this.builderFactory.builder(DmpBlueprintBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(BaseFieldSet.build(fields, DmpBlueprint._id), data);
return this.builderFactory.builder(DmpBlueprintBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(BaseFieldSet.build(fields, DmpBlueprint._id), data);
}
//endregion

2
dmp-backend/core/src/main/java/eu/eudat/service/entitydoi/EntityDoiServiceImpl.java
View File

@ -109,7 +109,7 @@ public class EntityDoiServiceImpl implements EntityDoiService {
this.entityManager.flush();
this.eventBroker.emit(new EntityDoiTouchedEvent(data.getId()));
return this.builderFactory.builder(EntityDoiBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(BaseFieldSet.build(fields, EntityDoi._id), data);
return this.builderFactory.builder(EntityDoiBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(BaseFieldSet.build(fields, EntityDoi._id), data);
}
public void deleteAndSave(UUID id) throws MyForbiddenException, InvalidApplicationException {

5
dmp-backend/core/src/main/java/eu/eudat/service/language/LanguageServiceImpl.java
View File

@ -25,16 +25,13 @@ import gr.cite.tools.logging.LoggerService;
import gr.cite.tools.logging.MapLogEntry;
import jakarta.persistence.EntityManager;
import org.hibernate.FlushMode;
import org.hibernate.annotations.FlushModeType;
import org.slf4j.LoggerFactory;
import org.springframework.context.MessageSource;
import org.springframework.context.i18n.LocaleContextHolder;
import org.springframework.stereotype.Service;
import javax.management.InvalidApplicationException;
import java.io.FileInputStream;
import java.io.IOException;
import java.io.InputStream;
import java.nio.charset.StandardCharsets;
import java.time.Instant;
import java.util.List;
@ -99,7 +96,7 @@ public class LanguageServiceImpl implements LanguageService {
//
// this.entityManager.flush();
return this.builderFactory.builder(LanguageBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(BaseFieldSet.build(fields, Language._id), data);
return this.builderFactory.builder(LanguageBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(BaseFieldSet.build(fields, Language._id), data);
}
public String getPayload(String code) throws IOException {

9
dmp-backend/core/src/main/java/eu/eudat/service/lock/LockServiceImpl.java
View File

@ -11,7 +11,6 @@ import eu.eudat.model.builder.LockBuilder;
import eu.eudat.model.deleter.LockDeleter;
import eu.eudat.model.persist.LockPersist;
import eu.eudat.query.LockQuery;
import eu.eudat.query.lookup.LockLookup;
import gr.cite.commons.web.authz.service.AuthorizationService;
import gr.cite.tools.data.builder.BuilderFactory;
import gr.cite.tools.data.deleter.DeleterFactory;
@ -104,11 +103,11 @@ public class LockServiceImpl implements LockService {
this.entityManager.flush();
return this.builderFactory.builder(LockBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(BaseFieldSet.build(fields, Lock._id), data);
return this.builderFactory.builder(LockBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(BaseFieldSet.build(fields, Lock._id), data);
}
public boolean isLocked(UUID target) throws InvalidApplicationException {
LockQuery query = this.queryFactory.query(LockQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).targetIds(target);
LockQuery query = this.queryFactory.query(LockQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).targetIds(target);
if (query.count() == 1) {
LockEntity lock = query.first();
if (lock.getLockedBy().equals(this.userScope.getUserId())) {
@ -128,7 +127,7 @@ public class LockServiceImpl implements LockService {
private Long forceUnlock(UUID target) throws InvalidApplicationException {
LockQuery query = this.queryFactory.query(LockQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).targetIds(target);
LockQuery query = this.queryFactory.query(LockQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).targetIds(target);
Long availableLocks = query.count();
long deletedLocks = 0L;
if (availableLocks > 0) {
@ -154,7 +153,7 @@ public class LockServiceImpl implements LockService {
public void unlock(UUID target) throws InvalidApplicationException {
LockQuery query = this.queryFactory.query(LockQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).targetIds(target);
LockQuery query = this.queryFactory.query(LockQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).targetIds(target);
if (query.count() == 1) {
LockEntity lock = query.first();
if (!lock.getLockedBy().equals(this.userScope.getUserId())) {

4
dmp-backend/core/src/main/java/eu/eudat/service/prefillingsource/PrefillingSourceServiceImpl.java
View File

@ -144,7 +144,7 @@ public class PrefillingSourceServiceImpl implements PrefillingSourceService {
this.entityManager.flush();
return this.builderFactory.builder(PrefillingSourceBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(BaseFieldSet.build(fields, PrefillingSource._id), data);
return this.builderFactory.builder(PrefillingSourceBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(BaseFieldSet.build(fields, PrefillingSource._id), data);
}
private @NotNull PrefillingSourceDefinitionEntity buildDefinitionEntity(PrefillingSourceDefinitionPersist persist) {
@ -361,7 +361,7 @@ public class PrefillingSourceServiceImpl implements PrefillingSourceService {
eu.eudat.commons.types.descriptiontemplate.DefinitionEntity descriptionTemplateDefinition = this.xmlHandlingService.fromXml(eu.eudat.commons.types.descriptiontemplate.DefinitionEntity.class, descriptionTemplateEntity.getDefinition());
Description description = new Description();
description.setDescriptionTemplate(this.builderFactory.builder(DescriptionTemplateBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(fieldSet, descriptionTemplateEntity));
description.setDescriptionTemplate(this.builderFactory.builder(DescriptionTemplateBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(fieldSet, descriptionTemplateEntity));
return mapPrefilledEntityToDescription(description, descriptionTemplateDefinition, prefillingSourceDefinition, prefillingSourceEntity.getLabel(), externalData.getResults().getFirst());//TODO
}

8
dmp-backend/core/src/main/java/eu/eudat/service/reference/ReferenceServiceImpl.java
View File

@ -122,7 +122,7 @@ public class ReferenceServiceImpl implements ReferenceService {
this.entityManager.flush();
return this.builderFactory.builder(ReferenceBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(BaseFieldSet.build(fields, Reference._id), data);
return this.builderFactory.builder(ReferenceBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(BaseFieldSet.build(fields, Reference._id), data);
}
private @NotNull DefinitionEntity buildDefinitionEntity(DefinitionPersist persist){
@ -187,7 +187,7 @@ public class ReferenceServiceImpl implements ReferenceService {
ReferenceEntity referenceEntity = buildReferenceEntityFromExternalData(result, data);
referenceEntities.add(referenceEntity);
}
externalModels = this.builderFactory.builder(ReferenceBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(lookup.getProject(), referenceEntities);
externalModels = this.builderFactory.builder(ReferenceBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(lookup.getProject(), referenceEntities);
}
List<Reference> models = this.fetchReferenceFromDb(lookup);
@ -236,10 +236,10 @@ public class ReferenceServiceImpl implements ReferenceService {
}
private List<Reference> fetchReferenceFromDb(ReferenceSearchLookup lookup){
ReferenceQuery query = lookup.enrich(this.queryFactory).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).sourceTypes(ReferenceSourceType.Internal).typeIds(lookup.getTypeId());
ReferenceQuery query = lookup.enrich(this.queryFactory).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).sourceTypes(ReferenceSourceType.Internal).typeIds(lookup.getTypeId());
List<ReferenceEntity> data = query.collectAs(lookup.getProject());
return this.builderFactory.builder(ReferenceBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(lookup.getProject(), data);
return this.builderFactory.builder(ReferenceBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(lookup.getProject(), data);
}
private ExternalDataResult getReferenceData(ReferenceTypeEntity referenceType, ExternalReferenceCriteria externalReferenceCriteria, String key) {

2
dmp-backend/core/src/main/java/eu/eudat/service/referencetype/ReferenceTypeServiceImpl.java
View File

@ -102,7 +102,7 @@ public class ReferenceTypeServiceImpl implements ReferenceTypeService {
this.entityManager.flush();
return this.builderFactory.builder(ReferenceTypeBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(BaseFieldSet.build(fields, ReferenceType._id), data);
return this.builderFactory.builder(ReferenceTypeBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(BaseFieldSet.build(fields, ReferenceType._id), data);
}
private @NotNull ReferenceTypeDefinitionEntity buildDefinitionEntity(ReferenceTypeDefinitionPersist persist){

35
dmp-backend/core/src/main/java/eu/eudat/service/storage/StorageFileProperties.java
View File

@ -197,19 +197,7 @@ public class StorageFileProperties {
}
public static class StaticFilesConfig{
private String externalUrls;
private String semantics;
private String h2020Template;
private String h2020DescriptionTemplate;
private String pidLinks;
public String getExternalUrls() {
return externalUrls;
}
public void setExternalUrls(String externalUrls) {
this.externalUrls = externalUrls;
}
public String getSemantics() {
return semantics;
@ -219,29 +207,6 @@ public class StorageFileProperties {
this.semantics = semantics;
}
public String getH2020Template() {
return h2020Template;
}
public void setH2020Template(String h2020Template) {
this.h2020Template = h2020Template;
}
public String getH2020DescriptionTemplate() {
return h2020DescriptionTemplate;
}
public void setH2020DescriptionTemplate(String h2020DescriptionTemplate) {
this.h2020DescriptionTemplate = h2020DescriptionTemplate;
}
public String getPidLinks() {
return pidLinks;
}
public void setPidLinks(String pidLinks) {
this.pidLinks = pidLinks;
}
}
}

6
dmp-backend/core/src/main/java/eu/eudat/service/storage/StorageFileService.java
View File

@ -33,12 +33,6 @@ public interface StorageFileService extends ApplicationListener<ApplicationReady
byte[] getSemanticsFile();
byte[] getPidLinksFile();
byte[] getH2020TemplateFile();
byte[] getH2020DescriptionTemplateFile();
byte[] getSupportiveMaterial(SupportiveMaterialFieldType type, String language);
byte[] getUserGuide(String language);

38
dmp-backend/core/src/main/java/eu/eudat/service/storage/StorageFileServiceImpl.java
View File

@ -7,7 +7,6 @@ import eu.eudat.commons.enums.StorageType;
import eu.eudat.commons.enums.SupportiveMaterialFieldType;
import eu.eudat.commons.scope.user.UserScope;
import eu.eudat.data.StorageFileEntity;
import eu.eudat.model.Description;
import eu.eudat.model.StorageFile;
import eu.eudat.model.builder.StorageFileBuilder;
import eu.eudat.model.persist.StorageFilePersist;
@ -94,7 +93,7 @@ public class StorageFileServiceImpl implements StorageFileService {
this.entityManager.persist(storageFile);
this.entityManager.flush();
return this.builderFactory.builder(StorageFileBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(BaseFieldSet.build(fields, StorageFile._id), storageFile);
return this.builderFactory.builder(StorageFileBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(BaseFieldSet.build(fields, StorageFile._id), storageFile);
}
@Override
@ -142,7 +141,7 @@ public class StorageFileServiceImpl implements StorageFileService {
file.delete();
this.entityManager.merge(storageFile);
return this.builderFactory.builder(StorageFileBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(BaseFieldSet.build(fields, StorageFile._id), storageFile);
return this.builderFactory.builder(StorageFileBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(BaseFieldSet.build(fields, StorageFile._id), storageFile);
}
catch (Exception ex) {
logger.warn("problem reading byte content of storage file " + fileId, ex);
@ -181,7 +180,7 @@ public class StorageFileServiceImpl implements StorageFileService {
this.entityManager.persist(data);
this.entityManager.merge(storageFile);
return this.builderFactory.builder(StorageFileBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(BaseFieldSet.build(fields, StorageFile._id), storageFile);
return this.builderFactory.builder(StorageFileBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(BaseFieldSet.build(fields, StorageFile._id), storageFile);
}
catch (Exception ex) {
@ -334,38 +333,7 @@ public class StorageFileServiceImpl implements StorageFileService {
}
@Override
public byte[] getPidLinksFile() {
try {
return this.readFileBytes(this.config.getStaticFiles().getPidLinks());
}
catch (Exception ex) {
logger.warn("problem reading PidLinks file", ex);
return null;
}
}
@Override
public byte[] getH2020TemplateFile() {
try {
return this.readFileBytes(this.config.getStaticFiles().getH2020Template());
}
catch (Exception ex) {
logger.warn("problem reading H2020Template file", ex);
return null;
}
}
@Override
public byte[] getH2020DescriptionTemplateFile() {
try {
return this.readFileBytes(this.config.getStaticFiles().getH2020DescriptionTemplate());
}
catch (Exception ex) {
logger.warn("problem reading H2020DescriptionTemplate file", ex);
return null;
}
}
//endregion
//region materials

13
dmp-backend/core/src/main/java/eu/eudat/service/supportivematerial/SupportiveMaterialServiceImpl.java
View File

@ -30,21 +30,12 @@ import jakarta.xml.bind.JAXBException;
import org.slf4j.LoggerFactory;
import org.springframework.context.MessageSource;
import org.springframework.context.i18n.LocaleContextHolder;
import org.springframework.http.HttpHeaders;
import org.springframework.http.HttpStatus;
import org.springframework.http.MediaType;
import org.springframework.http.ResponseEntity;
import org.springframework.stereotype.Service;
import javax.management.InvalidApplicationException;
import java.io.*;
import java.nio.file.Files;
import java.nio.file.Path;
import java.time.Instant;
import java.util.List;
import java.util.UUID;
import java.util.stream.Collectors;
import java.util.stream.Stream;
@Service
@ -104,7 +95,7 @@ public class SupportiveMaterialServiceImpl implements SupportiveMaterialService{
if (d == null)
throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{model.getId(), SupportiveMaterial.class.getSimpleName()}, LocaleContextHolder.getLocale()));
} else {
List<SupportiveMaterialEntity> data = this.queryFactory.query(SupportiveMaterialQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).languageCodes(model.getLanguageCode()).types(model.getType()).collect();
List<SupportiveMaterialEntity> data = this.queryFactory.query(SupportiveMaterialQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).languageCodes(model.getLanguageCode()).types(model.getType()).collect();
if(data != null && !data.isEmpty()){
throw new MyApplicationException("Could not create a new Data with same type and lang code !");
@ -126,7 +117,7 @@ public class SupportiveMaterialServiceImpl implements SupportiveMaterialService{
this.entityManager.flush();
return this.builderFactory.builder(SupportiveMaterialBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(BaseFieldSet.build(fields, SupportiveMaterial._id), d);
return this.builderFactory.builder(SupportiveMaterialBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(BaseFieldSet.build(fields, SupportiveMaterial._id), d);
}
public void deleteAndSave(UUID id) throws MyForbiddenException, InvalidApplicationException {

2
dmp-backend/core/src/main/java/eu/eudat/service/tag/TagServiceImpl.java
View File

@ -112,7 +112,7 @@ public class TagServiceImpl implements TagService {
this.entityManager.flush();
this.eventBroker.emit(new TagTouchedEvent(data.getId()));
return this.builderFactory.builder(TagBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(BaseFieldSet.build(fields, Tag._id), data);
return this.builderFactory.builder(TagBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(BaseFieldSet.build(fields, Tag._id), data);
}
public void deleteAndSave(UUID id) throws MyForbiddenException, InvalidApplicationException {

2
dmp-backend/core/src/main/java/eu/eudat/service/tenant/TenantServiceImpl.java
View File

@ -130,7 +130,7 @@ public class TenantServiceImpl implements TenantService {
this.entityManager.flush();
return this.builderFactory.builder(TenantBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(BaseFieldSet.build(fields, Tenant._id), data);
return this.builderFactory.builder(TenantBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(BaseFieldSet.build(fields, Tenant._id), data);
}
private @NotNull TenantConfigEntity buildConfigEntity(TenantConfigPersist persist) throws InvalidAlgorithmParameterException, NoSuchPaddingException, IllegalBlockSizeException, NoSuchAlgorithmException, BadPaddingException, InvalidKeyException {

175
dmp-backend/core/src/main/java/eu/eudat/service/transformer/FileTransformerService.java
View File

@ -1,177 +1,14 @@
package eu.eudat.service.transformer;
import eu.eudat.authorization.AuthorizationFlags;
import eu.eudat.authorization.Permission;
import eu.eudat.cache.transformer.FileTransformerConfigurationCache;
import eu.eudat.commonmodels.models.FileEnvelopeModel;
import eu.eudat.commonmodels.models.description.DescriptionModel;
import eu.eudat.commonmodels.models.dmp.DmpModel;
import eu.eudat.commons.enums.StorageType;
import eu.eudat.configurations.transformer.TransformerProperties;
import eu.eudat.file.transformer.interfaces.FileTransformerConfiguration;
import eu.eudat.file.transformer.models.misc.FileFormat;
import eu.eudat.model.Description;
import eu.eudat.model.Dmp;
import eu.eudat.model.builder.commonmodels.description.DescriptionCommonModelBuilder;
import eu.eudat.model.builder.commonmodels.dmp.DmpCommonModelBuilder;
import eu.eudat.model.file.TransformerCacheModel;
import eu.eudat.query.DescriptionQuery;
import eu.eudat.query.DmpQuery;
import eu.eudat.repository.TransformerRepository;
import eu.eudat.service.storage.StorageFileService;
import gr.cite.commons.web.authz.service.AuthorizationService;
import gr.cite.commons.web.oidc.filter.webflux.TokenExchangeCacheService;
import gr.cite.commons.web.oidc.filter.webflux.TokenExchangeFilterFunction;
import gr.cite.commons.web.oidc.filter.webflux.TokenExchangeModel;
import gr.cite.tools.data.builder.BuilderFactory;
import gr.cite.tools.data.query.QueryFactory;
import gr.cite.tools.exception.MyNotFoundException;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.context.MessageSource;
import org.springframework.context.i18n.LocaleContextHolder;
import org.springframework.stereotype.Service;
import org.springframework.web.reactive.function.client.ExchangeFilterFunction;
import org.springframework.web.reactive.function.client.WebClient;
import reactor.core.publisher.Mono;
import javax.management.InvalidApplicationException;
import java.io.IOException;
import java.net.URI;
import java.util.*;
import java.util.List;
import java.util.UUID;
@Service
public class FileTransformerService {
private static final Logger logger = LoggerFactory.getLogger(FileTransformerService.class);
public interface FileTransformerService {
List<FileFormat> getAvailableExportFileFormats();
private final TransformerProperties transformerProperties;
private final Map<String, TransformerRepository> clients;
private final TokenExchangeCacheService tokenExchangeCacheService;
private final FileTransformerConfigurationCache fileTransformerConfigurationCache;
private final AuthorizationService authorizationService;
private final WebClient.Builder webClientBuilder;
private final QueryFactory queryFactory;
private final BuilderFactory builderFactory;
private final StorageFileService storageFileService;
private final MessageSource messageSource;
eu.eudat.model.file.FileEnvelope exportDmp(UUID dmpId, String repositoryId, String format);
@Autowired
public FileTransformerService(TransformerProperties transformerProperties, TokenExchangeCacheService tokenExchangeCacheService, FileTransformerConfigurationCache fileTransformerConfigurationCache, WebClient.Builder builder, AuthorizationService authorizationService,
QueryFactory queryFactory, BuilderFactory builderFactory, StorageFileService storageFileService, MessageSource messageSource) {
this.transformerProperties = transformerProperties;
this.tokenExchangeCacheService = tokenExchangeCacheService;
this.fileTransformerConfigurationCache = fileTransformerConfigurationCache;
this.authorizationService = authorizationService;
this.webClientBuilder = builder;
this.queryFactory = queryFactory;
this.builderFactory = builderFactory;
this.storageFileService = storageFileService;
this.messageSource = messageSource;
this.clients = new HashMap<>();
}
private TransformerRepository getRepository(String repoId) {
if (this.clients.containsKey(repoId)) return this.clients.get(repoId);
//GK: It's register time
TransformerProperties.TransformerSource source = transformerProperties.getSources().stream().filter(depositSource -> depositSource.getCodes().contains(repoId)).findFirst().orElse(null);
if (source != null) {
String host = URI.create(source.getUrl()).getHost();
TokenExchangeModel tokenExchangeModel = new TokenExchangeModel(host + "_" + source.getClientId(), source.getIssuerUrl(), source.getClientId(), source.getClientSecret(), source.getScope());
TokenExchangeFilterFunction tokenExchangeFilterFunction = new TokenExchangeFilterFunction(this.tokenExchangeCacheService, tokenExchangeModel);
TransformerRepository repository = new TransformerRepository(webClientBuilder.baseUrl(source.getUrl() + "/api/file-transformer").filters(exchangeFilterFunctions -> {
exchangeFilterFunctions.add(tokenExchangeFilterFunction);
exchangeFilterFunctions.add(logRequest());
}).build());
source.getCodes().forEach(code -> this.clients.put(code, repository));
return repository;
}
return null;
}
public List<FileFormat> getAvailableExportFileFormats() {
List<FileFormat> formats = new ArrayList<>();
List<FileTransformerConfiguration> configurations = this.getAvailableConfigurations();
if(configurations != null){
for (FileTransformerConfiguration configuration : configurations){
if (configuration != null && configuration.getExportVariants() != null) formats.addAll(configuration.getExportVariants());
}
}
return formats;
}
private List<FileTransformerConfiguration> getAvailableConfigurations() {
TransformerCacheModel configs = fileTransformerConfigurationCache.lookup("base");
if (configs == null) {
List<FileTransformerConfiguration> configurations = new ArrayList<>();
//GK: So much for lazy loading
List<TransformerRepository> repositories = transformerProperties.getSources().stream().map(depositSource -> getRepository(depositSource.getCodes().getFirst())).toList();
repositories = new ArrayList<>(repositories);
repositories.forEach((client) -> {
try {
FileTransformerConfiguration repositoryConfig = client.getConfiguration();
if (repositoryConfig != null) {
configurations.add(repositoryConfig);
}
} catch (Exception e) {
logger.warn(e.getLocalizedMessage(), e);
}
});
configs = new TransformerCacheModel(configurations);
this.fileTransformerConfigurationCache.put("base", configs);
}
return configs.getConfigurations();
}
public eu.eudat.model.file.FileEnvelope exportDmp(UUID dmpId, String format) throws InvalidApplicationException, IOException {
this.authorizationService.authorize(Permission.EditDmp);
//GK: First get the right client
TransformerRepository repository = getRepository(format);
if (repository == null) throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{format, TransformerRepository.class.getSimpleName()}, LocaleContextHolder.getLocale()));
//GK: Second get the Target Data Management Plan
DmpQuery query = this.queryFactory.query(DmpQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).ids(dmpId);
DmpModel dmpFileTransformerModel = this.builderFactory.builder(DmpCommonModelBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(query.first());
if (dmpFileTransformerModel == null) throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{dmpId, Dmp.class.getSimpleName()}, LocaleContextHolder.getLocale()));
FileEnvelopeModel fileEnvelope = repository.exportDmp(dmpFileTransformerModel, format);
eu.eudat.model.file.FileEnvelope result = new eu.eudat.model.file.FileEnvelope();
byte[] data = repository.getConfiguration().isUseSharedStorage() ? storageFileService.readByFileRefAsBytesSafe(fileEnvelope.getFileRef(), StorageType.Transformer) : fileEnvelope.getFile();
result.setFile(data);
result.setFilename(fileEnvelope.getFilename());
return result;
}
public eu.eudat.model.file.FileEnvelope exportDescription(UUID descriptionId, String format) {
this.authorizationService.authorize(Permission.EditDmp);
//GK: First get the right client
TransformerRepository repository = getRepository(format);
if (repository == null) throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{format, TransformerRepository.class.getSimpleName()}, LocaleContextHolder.getLocale()));
//GK: Second get the Target Data Management Plan
DescriptionQuery query = this.queryFactory.query(DescriptionQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).ids(descriptionId);
DescriptionModel descriptionFileTransformerModel = this.builderFactory.builder(DescriptionCommonModelBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(query.first());
if (descriptionFileTransformerModel == null) throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{descriptionId, Description.class.getSimpleName()}, LocaleContextHolder.getLocale()));
FileEnvelopeModel fileEnvelope = repository.exportDescription(descriptionFileTransformerModel, format);
eu.eudat.model.file.FileEnvelope result = new eu.eudat.model.file.FileEnvelope();
byte[] data = repository.getConfiguration().isUseSharedStorage() ? storageFileService.readByFileRefAsBytesSafe(fileEnvelope.getFileRef(), StorageType.Transformer) : fileEnvelope.getFile(); //TODO: shared storage should be per repository
result.setFile(data);
result.setFilename(fileEnvelope.getFilename());
return result;
}
// This method returns filter function which will log request data
private static ExchangeFilterFunction logRequest() {
return ExchangeFilterFunction.ofRequestProcessor(clientRequest -> {
logger.info("Request: {} {}", clientRequest.method(), clientRequest.url());
clientRequest.headers().forEach((name, values) -> values.forEach(value -> logger.info("{}={}", name, value)));
return Mono.just(clientRequest);
});
}
eu.eudat.model.file.FileEnvelope exportDescription(UUID descriptionId, String format);
}

178
dmp-backend/core/src/main/java/eu/eudat/service/transformer/FileTransformerServiceImpl.java Normal file
View File

@ -0,0 +1,178 @@
package eu.eudat.service.transformer;
import eu.eudat.authorization.AuthorizationFlags;
import eu.eudat.authorization.Permission;
import eu.eudat.cache.transformer.FileTransformerConfigurationCache;
import eu.eudat.commonmodels.models.FileEnvelopeModel;
import eu.eudat.commonmodels.models.description.DescriptionModel;
import eu.eudat.commonmodels.models.dmp.DmpModel;
import eu.eudat.commons.enums.StorageType;
import eu.eudat.configurations.transformer.TransformerProperties;
import eu.eudat.file.transformer.interfaces.FileTransformerConfiguration;
import eu.eudat.file.transformer.models.misc.FileFormat;
import eu.eudat.model.Description;
import eu.eudat.model.Dmp;
import eu.eudat.model.builder.commonmodels.description.DescriptionCommonModelBuilder;
import eu.eudat.model.builder.commonmodels.dmp.DmpCommonModelBuilder;
import eu.eudat.model.file.TransformerCacheModel;
import eu.eudat.query.DescriptionQuery;
import eu.eudat.query.DmpQuery;
import eu.eudat.repository.TransformerRepository;
import eu.eudat.service.storage.StorageFileService;
import gr.cite.commons.web.authz.service.AuthorizationService;
import gr.cite.commons.web.oidc.filter.webflux.TokenExchangeCacheService;
import gr.cite.commons.web.oidc.filter.webflux.TokenExchangeFilterFunction;
import gr.cite.commons.web.oidc.filter.webflux.TokenExchangeModel;
import gr.cite.tools.data.builder.BuilderFactory;
import gr.cite.tools.data.query.QueryFactory;
import gr.cite.tools.exception.MyNotFoundException;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.context.MessageSource;
import org.springframework.context.i18n.LocaleContextHolder;
import org.springframework.stereotype.Service;
import org.springframework.web.reactive.function.client.ExchangeFilterFunction;
import org.springframework.web.reactive.function.client.WebClient;
import reactor.core.publisher.Mono;
import java.net.URI;
import java.util.*;
@Service
public class FileTransformerServiceImpl implements FileTransformerService {
private static final Logger logger = LoggerFactory.getLogger(FileTransformerServiceImpl.class);
private final TransformerProperties transformerProperties;
private final Map<String, TransformerRepository> clients;
private final TokenExchangeCacheService tokenExchangeCacheService;
private final FileTransformerConfigurationCache fileTransformerConfigurationCache;
private final AuthorizationService authorizationService;
private final WebClient.Builder webClientBuilder;
private final QueryFactory queryFactory;
private final BuilderFactory builderFactory;
private final StorageFileService storageFileService;
private final MessageSource messageSource;
@Autowired
public FileTransformerServiceImpl(TransformerProperties transformerProperties, TokenExchangeCacheService tokenExchangeCacheService, FileTransformerConfigurationCache fileTransformerConfigurationCache, WebClient.Builder builder, AuthorizationService authorizationService,
QueryFactory queryFactory, BuilderFactory builderFactory, StorageFileService storageFileService, MessageSource messageSource) {
this.transformerProperties = transformerProperties;
this.tokenExchangeCacheService = tokenExchangeCacheService;
this.fileTransformerConfigurationCache = fileTransformerConfigurationCache;
this.authorizationService = authorizationService;
this.webClientBuilder = builder;
this.queryFactory = queryFactory;
this.builderFactory = builderFactory;
this.storageFileService = storageFileService;
this.messageSource = messageSource;
this.clients = new HashMap<>();
}
private TransformerRepository getRepository(String repoId) {
if (this.clients.containsKey(repoId)) return this.clients.get(repoId);
//GK: It's register time
TransformerProperties.TransformerSource source = transformerProperties.getSources().stream().filter(depositSource -> depositSource.getCodes().contains(repoId)).findFirst().orElse(null);
if (source != null) {
String host = URI.create(source.getUrl()).getHost();
TokenExchangeModel tokenExchangeModel = new TokenExchangeModel(host + "_" + source.getClientId(), source.getIssuerUrl(), source.getClientId(), source.getClientSecret(), source.getScope());
TokenExchangeFilterFunction tokenExchangeFilterFunction = new TokenExchangeFilterFunction(this.tokenExchangeCacheService, tokenExchangeModel);
TransformerRepository repository = new TransformerRepository(webClientBuilder.baseUrl(source.getUrl() + "/api/file-transformer").filters(exchangeFilterFunctions -> {
exchangeFilterFunctions.add(tokenExchangeFilterFunction);
exchangeFilterFunctions.add(logRequest());
}).build());
source.getCodes().forEach(code -> this.clients.put(code, repository));
return repository;
}
return null;
}
@Override
public List<FileFormat> getAvailableExportFileFormats() {
List<FileFormat> formats = new ArrayList<>();
List<FileTransformerConfiguration> configurations = this.getAvailableConfigurations();
if(configurations != null){
for (FileTransformerConfiguration configuration : configurations){
if (configuration != null && configuration.getExportVariants() != null) formats.addAll(configuration.getExportVariants());
}
}
return formats;
}
private List<FileTransformerConfiguration> getAvailableConfigurations() {
TransformerCacheModel configs = fileTransformerConfigurationCache.lookup("base");
if (configs == null) {
List<FileTransformerConfiguration> configurations = new ArrayList<>();
//GK: So much for lazy loading
List<TransformerRepository> repositories = transformerProperties.getSources().stream().map(depositSource -> getRepository(depositSource.getCodes().getFirst())).toList();
repositories = new ArrayList<>(repositories);
repositories.forEach((client) -> {
try {
FileTransformerConfiguration repositoryConfig = client.getConfiguration();
if (repositoryConfig != null) {
configurations.add(repositoryConfig);
}
} catch (Exception e) {
logger.warn(e.getLocalizedMessage(), e);
}
});
configs = new TransformerCacheModel(configurations);
this.fileTransformerConfigurationCache.put("base", configs);
}
return configs.getConfigurations();
}
@Override
public eu.eudat.model.file.FileEnvelope exportDmp(UUID dmpId, String repositoryId, String format) {
this.authorizationService.authorize(Permission.EditDmp);
//GK: First get the right client
TransformerRepository repository = getRepository(repositoryId);
if (repository == null) throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{repositoryId, TransformerRepository.class.getSimpleName()}, LocaleContextHolder.getLocale()));
//GK: Second get the Target Data Management Plan
DmpQuery query = this.queryFactory.query(DmpQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).ids(dmpId);
DmpModel dmpFileTransformerModel = this.builderFactory.builder(DmpCommonModelBuilder.class).useSharedStorage(repository.getConfiguration().isUseSharedStorage()).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(query.first());
if (dmpFileTransformerModel == null) throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{dmpId, Dmp.class.getSimpleName()}, LocaleContextHolder.getLocale()));
FileEnvelopeModel fileEnvelope = repository.exportDmp(dmpFileTransformerModel, format);
eu.eudat.model.file.FileEnvelope result = new eu.eudat.model.file.FileEnvelope();
byte[] data = repository.getConfiguration().isUseSharedStorage() ? storageFileService.readByFileRefAsBytesSafe(fileEnvelope.getFileRef(), StorageType.Transformer) : fileEnvelope.getFile();
result.setFile(data);
result.setFilename(fileEnvelope.getFilename());
return result;
}
@Override
public eu.eudat.model.file.FileEnvelope exportDescription(UUID descriptionId, String format) {
this.authorizationService.authorize(Permission.EditDmp);
//GK: First get the right client
TransformerRepository repository = getRepository(format);
if (repository == null) throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{format, TransformerRepository.class.getSimpleName()}, LocaleContextHolder.getLocale()));
//GK: Second get the Target Data Management Plan
DescriptionQuery query = this.queryFactory.query(DescriptionQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).ids(descriptionId);
DescriptionModel descriptionFileTransformerModel = this.builderFactory.builder(DescriptionCommonModelBuilder.class).useSharedStorage(repository.getConfiguration().isUseSharedStorage()).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(query.first());
if (descriptionFileTransformerModel == null) throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{descriptionId, Description.class.getSimpleName()}, LocaleContextHolder.getLocale()));
FileEnvelopeModel fileEnvelope = repository.exportDescription(descriptionFileTransformerModel, format);
eu.eudat.model.file.FileEnvelope result = new eu.eudat.model.file.FileEnvelope();
byte[] data = repository.getConfiguration().isUseSharedStorage() ? storageFileService.readByFileRefAsBytesSafe(fileEnvelope.getFileRef(), StorageType.Transformer) : fileEnvelope.getFile(); //TODO: shared storage should be per repository
result.setFile(data);
result.setFilename(fileEnvelope.getFilename());
return result;
}
// This method returns filter function which will log request data
private static ExchangeFilterFunction logRequest() {
return ExchangeFilterFunction.ofRequestProcessor(clientRequest -> {
logger.info("Request: {} {}", clientRequest.method(), clientRequest.url());
clientRequest.headers().forEach((name, values) -> values.forEach(value -> logger.info("{}={}", name, value)));
return Mono.just(clientRequest);
});
}
}

4
dmp-backend/core/src/main/java/eu/eudat/service/user/UserServiceImpl.java
View File

@ -178,7 +178,7 @@ public class UserServiceImpl implements UserService {
this.eventBroker.emit(new UserTouchedEvent(data.getId()));
this.userTouchedIntegrationEventHandler.handle(data.getId());
return this.builderFactory.builder(UserBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(BaseFieldSet.build(fields, User._id), data);
return this.builderFactory.builder(UserBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(BaseFieldSet.build(fields, User._id), data);
}
private @NotNull AdditionalInfoEntity buildAdditionalInfoEntity(UserAdditionalInfoPersist persist){
@ -276,7 +276,7 @@ public class UserServiceImpl implements UserService {
this.eventBroker.emit(new UserTouchedEvent(data.getId()));
this.userTouchedIntegrationEventHandler.handle(data.getId());
return this.builderFactory.builder(UserBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(BaseFieldSet.build(fields, User._id), data);
return this.builderFactory.builder(UserBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(BaseFieldSet.build(fields, User._id), data);
}
//region mine

2
dmp-backend/core/src/main/java/eu/eudat/service/user/settings/UserSettingsServiceImpl.java
View File

@ -96,7 +96,7 @@ public class UserSettingsServiceImpl implements UserSettingsService {
this.entityManager.flush();
return this.builderFactory.builder(UserSettingsBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(BaseFieldSet.build(fields, UserSettings._id, UserSettings._key), data);
return this.builderFactory.builder(UserSettingsBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(BaseFieldSet.build(fields, UserSettings._id, UserSettings._key), data);
}
}

2
dmp-backend/web/pom.xml
View File

@ -199,7 +199,7 @@
<dependency>
<groupId>gr.cite.opendmp</groupId>
<artifactId>file-transformer-base</artifactId>
<version>0.0.5</version>
<version>0.0.6</version>
</dependency>
</dependencies>

13
dmp-backend/web/src/main/java/eu/eudat/controllers/DescriptionController.java
View File

@ -2,19 +2,15 @@ package eu.eudat.controllers;
import eu.eudat.audit.AuditableAction;
import eu.eudat.authorization.AuthorizationFlags;
import eu.eudat.authorization.Permission;
import eu.eudat.commons.enums.DmpAccessType;
import eu.eudat.commons.enums.DmpStatus;
import eu.eudat.commons.enums.IsActive;
import eu.eudat.commons.enums.StorageType;
import eu.eudat.convention.ConventionService;
import eu.eudat.data.StorageFileEntity;
import eu.eudat.model.StorageFile;
import eu.eudat.model.builder.PublicDescriptionBuilder;
import eu.eudat.model.persist.DescriptionFieldFilePersist;
import eu.eudat.model.persist.StorageFilePersist;
import eu.eudat.service.storage.StorageFileService;
import gr.cite.tools.fieldset.BaseFieldSet;
import gr.cite.tools.validation.ValidationFilterAnnotation;
import eu.eudat.model.Description;
import eu.eudat.model.Dmp;
@ -40,7 +36,6 @@ import gr.cite.tools.exception.MyNotFoundException;
import gr.cite.tools.fieldset.FieldSet;
import gr.cite.tools.logging.LoggerService;
import gr.cite.tools.logging.MapLogEntry;
import org.apache.commons.io.FilenameUtils;
import org.slf4j.LoggerFactory;
import org.springframework.context.MessageSource;
import org.springframework.context.i18n.LocaleContextHolder;
@ -54,8 +49,6 @@ import org.springframework.web.multipart.MultipartFile;
import javax.management.InvalidApplicationException;
import java.io.IOException;
import java.net.URLConnection;
import java.time.Duration;
import java.util.*;
import static eu.eudat.authorization.AuthorizationFlags.Public;
@ -138,7 +131,7 @@ public class DescriptionController {
this.censorFactory.censor(DescriptionCensor.class).censor(lookup.getProject(), null);
QueryResult<Description> queryResult = this.elasticQueryHelperService.collect(lookup, AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic, null);
QueryResult<Description> queryResult = this.elasticQueryHelperService.collect(lookup, AuthorizationFlags.OwnerOrDmpAssociatedOrPermission, null);
this.auditService.track(AuditableAction.Description_Query, "lookup", lookup);
@ -152,8 +145,8 @@ public class DescriptionController {
this.censorFactory.censor(DescriptionCensor.class).censor(fieldSet, null);
DescriptionQuery query = this.queryFactory.query(DescriptionQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).ids(id);
Description model = this.builderFactory.builder(DescriptionBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(fieldSet, query.firstAs(fieldSet));
DescriptionQuery query = this.queryFactory.query(DescriptionQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).ids(id);
Description model = this.builderFactory.builder(DescriptionBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(fieldSet, query.firstAs(fieldSet));
if (model == null)
throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{id, Dmp.class.getSimpleName()}, LocaleContextHolder.getLocale()));

8
dmp-backend/web/src/main/java/eu/eudat/controllers/DescriptionTemplateController.java
View File

@ -85,10 +85,10 @@ public class DescriptionTemplateController {
this.censorFactory.censor(DescriptionTemplateCensor.class).censor(lookup.getProject(), null);
DescriptionTemplateQuery query = lookup.enrich(this.queryFactory).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic);
DescriptionTemplateQuery query = lookup.enrich(this.queryFactory).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission);
List<DescriptionTemplateEntity> data = query.collectAs(lookup.getProject());
List<DescriptionTemplate> models = this.builderFactory.builder(DescriptionTemplateBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(lookup.getProject(), data);
List<DescriptionTemplate> models = this.builderFactory.builder(DescriptionTemplateBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(lookup.getProject(), data);
long count = (lookup.getMetadata() != null && lookup.getMetadata().getCountAll()) ? query.count() : models.size();
this.auditService.track(AuditableAction.DescriptionTemplate_Query, "lookup", lookup);
@ -102,8 +102,8 @@ public class DescriptionTemplateController {
this.censorFactory.censor(DescriptionTemplateCensor.class).censor(fieldSet, null);
DescriptionTemplateQuery query = this.queryFactory.query(DescriptionTemplateQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).ids(id);
DescriptionTemplate model = this.builderFactory.builder(DescriptionTemplateBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(fieldSet, query.firstAs(fieldSet));
DescriptionTemplateQuery query = this.queryFactory.query(DescriptionTemplateQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).ids(id);
DescriptionTemplate model = this.builderFactory.builder(DescriptionTemplateBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(fieldSet, query.firstAs(fieldSet));
if (model == null)
throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{id, DescriptionTemplate.class.getSimpleName()}, LocaleContextHolder.getLocale()));

9
dmp-backend/web/src/main/java/eu/eudat/controllers/DescriptionTemplateTypeController.java
View File

@ -23,7 +23,6 @@ import gr.cite.tools.logging.LoggerService;
import gr.cite.tools.logging.MapLogEntry;
import gr.cite.tools.validation.ValidationFilterAnnotation;
import org.slf4j.LoggerFactory;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.context.MessageSource;
import org.springframework.context.i18n.LocaleContextHolder;
import org.springframework.transaction.annotation.Transactional;
@ -69,10 +68,10 @@ public class DescriptionTemplateTypeController {
this.censorFactory.censor(DescriptionTemplateTypeCensor.class).censor(lookup.getProject(), null);
DescriptionTemplateTypeQuery query = lookup.enrich(this.queryFactory).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic);
DescriptionTemplateTypeQuery query = lookup.enrich(this.queryFactory).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission);
List<DescriptionTemplateTypeEntity> data = query.collectAs(lookup.getProject());
List<DescriptionTemplateType> models = this.builderFactory.builder(DescriptionTemplateTypeBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(lookup.getProject(), data);
List<DescriptionTemplateType> models = this.builderFactory.builder(DescriptionTemplateTypeBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(lookup.getProject(), data);
long count = (lookup.getMetadata() != null && lookup.getMetadata().getCountAll()) ? query.count() : models.size();
this.auditService.track(AuditableAction.DescriptionTemplateType_Query, "lookup", lookup);
@ -87,8 +86,8 @@ public class DescriptionTemplateTypeController {
this.censorFactory.censor(DescriptionTemplateTypeCensor.class).censor(fieldSet, null);
DescriptionTemplateTypeQuery query = this.queryFactory.query(DescriptionTemplateTypeQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).ids(id);
DescriptionTemplateType model = this.builderFactory.builder(DescriptionTemplateTypeBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(fieldSet, query.firstAs(fieldSet));
DescriptionTemplateTypeQuery query = this.queryFactory.query(DescriptionTemplateTypeQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).ids(id);
DescriptionTemplateType model = this.builderFactory.builder(DescriptionTemplateTypeBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(fieldSet, query.firstAs(fieldSet));
if (model == null)
throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{id, DescriptionTemplateType.class.getSimpleName()}, LocaleContextHolder.getLocale()));

8
dmp-backend/web/src/main/java/eu/eudat/controllers/DmpBlueprintController.java
View File

@ -81,10 +81,10 @@ public class DmpBlueprintController {
logger.debug("querying {}", DmpBlueprint.class.getSimpleName());
this.censorFactory.censor(DmpBlueprintCensor.class).censor(lookup.getProject(), null);
DmpBlueprintQuery query = lookup.enrich(this.queryFactory).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic);
DmpBlueprintQuery query = lookup.enrich(this.queryFactory).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission);
List<DmpBlueprintEntity> data = query.collectAs(lookup.getProject());
List<DmpBlueprint> models = this.builderFactory.builder(DmpBlueprintBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(lookup.getProject(), data);
List<DmpBlueprint> models = this.builderFactory.builder(DmpBlueprintBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(lookup.getProject(), data);
long count = (lookup.getMetadata() != null && lookup.getMetadata().getCountAll()) ? query.count() : models.size();
this.auditService.track(AuditableAction.DmpBlueprint_Query, "lookup", lookup);
@ -98,8 +98,8 @@ public class DmpBlueprintController {
this.censorFactory.censor(DmpBlueprintCensor.class).censor(fieldSet, null);
DmpBlueprintQuery query = this.queryFactory.query(DmpBlueprintQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).ids(id);
DmpBlueprint model = this.builderFactory.builder(DmpBlueprintBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(fieldSet, query.firstAs(fieldSet));
DmpBlueprintQuery query = this.queryFactory.query(DmpBlueprintQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).ids(id);
DmpBlueprint model = this.builderFactory.builder(DmpBlueprintBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(fieldSet, query.firstAs(fieldSet));
if (model == null)
throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{id, DmpBlueprint.class.getSimpleName()}, LocaleContextHolder.getLocale()));

25
dmp-backend/web/src/main/java/eu/eudat/controllers/DmpController.java
View File

@ -5,11 +5,7 @@ import eu.eudat.authorization.AuthorizationFlags;
import eu.eudat.commons.enums.DmpAccessType;
import eu.eudat.commons.enums.DmpStatus;
import eu.eudat.commons.enums.IsActive;
import eu.eudat.model.builder.DescriptionBuilder;
import eu.eudat.model.builder.PublicDmpBuilder;
import eu.eudat.model.censorship.PublicDescriptionCensor;
import eu.eudat.query.DescriptionQuery;
import eu.eudat.query.DmpDescriptionTemplateQuery;
import gr.cite.tools.validation.ValidationFilterAnnotation;
import eu.eudat.model.*;
import eu.eudat.model.builder.DmpBuilder;
@ -123,8 +119,7 @@ public class DmpController {
this.censorFactory.censor(DmpCensor.class).censor(lookup.getProject(), null);
QueryResult<Dmp> queryResult = this.elasticQueryHelperService.collect(lookup, AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic, null);
QueryResult<Dmp> queryResult = this.elasticQueryHelperService.collect(lookup, AuthorizationFlags.OwnerOrDmpAssociatedOrPermission, null);
this.auditService.track(AuditableAction.Dmp_Query, "lookup", lookup);
@ -137,8 +132,8 @@ public class DmpController {
this.censorFactory.censor(DmpCensor.class).censor(fieldSet, null);
DmpQuery query = this.queryFactory.query(DmpQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).ids(id);
Dmp model = this.builderFactory.builder(DmpBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(fieldSet, query.firstAs(fieldSet));
DmpQuery query = this.queryFactory.query(DmpQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).ids(id);
Dmp model = this.builderFactory.builder(DmpBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(fieldSet, query.firstAs(fieldSet));
if (model == null)
throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{id, Dmp.class.getSimpleName()}, LocaleContextHolder.getLocale()));
@ -242,11 +237,17 @@ public class DmpController {
return new QueryResult<>(persisted);
}
@GetMapping("{id}/export/{type}")
public ResponseEntity<byte[]> export(@PathVariable("id") UUID id, @PathVariable("type") String exportType) throws InvalidApplicationException, IOException {
logger.debug(new MapLogEntry("exporting dmp"));
@GetMapping("{id}/export/{transformerId}/{type}")
public ResponseEntity<byte[]> export(@PathVariable("id") UUID id, @PathVariable("transformerId") String transformerId, @PathVariable("type") String exportType) throws InvalidApplicationException, IOException {
logger.debug(new MapLogEntry("exporting dmp").And("id", id).And("transformerId", transformerId).And("exportType", exportType));
return this.dmpService.export(id, exportType);
ResponseEntity<byte[]> bytes = this.dmpService.export(id, transformerId, exportType);
this.auditService.track(AuditableAction.Dmp_Export, Map.ofEntries(
new AbstractMap.SimpleEntry<String, Object>("id", id),
new AbstractMap.SimpleEntry<String, Object>("transformerId", transformerId),
new AbstractMap.SimpleEntry<String, Object>("exportType", exportType)
));
return bytes;
}
@PostMapping("{id}/invite-users")

8
dmp-backend/web/src/main/java/eu/eudat/controllers/EntityDoiController.java
View File

@ -75,10 +75,10 @@ public class EntityDoiController {
this.censorFactory.censor(EntityDoiCensor.class).censor(lookup.getProject(), null);
EntityDoiQuery query = lookup.enrich(this.queryFactory).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic);
EntityDoiQuery query = lookup.enrich(this.queryFactory).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission);
List<EntityDoiEntity> data = query.collectAs(lookup.getProject());
List<EntityDoi> models = this.builderFactory.builder(EntityDoiBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(lookup.getProject(), data);
List<EntityDoi> models = this.builderFactory.builder(EntityDoiBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(lookup.getProject(), data);
long count = (lookup.getMetadata() != null && lookup.getMetadata().getCountAll()) ? query.count() : models.size();
this.auditService.track(AuditableAction.EntityDoi_Query, "lookup", lookup);
@ -92,8 +92,8 @@ public class EntityDoiController {
this.censorFactory.censor(EntityDoiCensor.class).censor(fieldSet, null);
EntityDoiQuery query = this.queryFactory.query(EntityDoiQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).ids(id);
EntityDoi model = this.builderFactory.builder(EntityDoiBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(fieldSet, query.firstAs(fieldSet));
EntityDoiQuery query = this.queryFactory.query(EntityDoiQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).ids(id);
EntityDoi model = this.builderFactory.builder(EntityDoiBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(fieldSet, query.firstAs(fieldSet));
if (model == null)
throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{id, EntityDoi.class.getSimpleName()}, LocaleContextHolder.getLocale()));

2
dmp-backend/web/src/main/java/eu/eudat/controllers/FileTransformerController.java
View File

@ -52,7 +52,7 @@ public class FileTransformerController {
logger.debug(new MapLogEntry("exporting dmp"));
HttpHeaders headers = new HttpHeaders();
FileEnvelope fileEnvelope = this.fileTransformerService.exportDmp(requestModel.getId(), requestModel.getFormat());
FileEnvelope fileEnvelope = this.fileTransformerService.exportDmp(requestModel.getId(), requestModel.getRepositoryId(), requestModel.getFormat());
headers.add("Content-Disposition", "attachment;filename=" + fileEnvelope.getFilename());
byte[] data = fileEnvelope.getFile();
headers.setContentType(MediaType.APPLICATION_OCTET_STREAM);

24
dmp-backend/web/src/main/java/eu/eudat/controllers/LanguageController.java
View File

@ -6,7 +6,6 @@ import eu.eudat.authorization.AuthorizationFlags;
import gr.cite.tools.validation.ValidationFilterAnnotation;
import eu.eudat.data.LanguageEntity;
import eu.eudat.model.Language;
import eu.eudat.model.UserContactInfo;
import eu.eudat.model.builder.LanguageBuilder;
import eu.eudat.model.censorship.LanguageCensor;
import eu.eudat.model.persist.LanguagePersist;
@ -35,12 +34,11 @@ import org.springframework.web.bind.annotation.*;
import javax.management.InvalidApplicationException;
import java.io.IOException;
import java.util.AbstractMap;
import java.util.List;
import java.util.Map;
import java.util.UUID;
import java.util.*;
import java.util.stream.Collectors;
import static eu.eudat.authorization.AuthorizationFlags.Public;
@RestController
@RequestMapping(path = {"api/language"})
public class LanguageController {
@ -81,9 +79,9 @@ public class LanguageController {
this.censorFactory.censor(LanguageCensor.class).censor(lookup.getProject(), null);
LanguageQuery query = lookup.enrich(this.queryFactory).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic);
LanguageQuery query = lookup.enrich(this.queryFactory).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission);
List<LanguageEntity> data = query.collectAs(lookup.getProject());
List<Language> models = this.builderFactory.builder(LanguageBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(lookup.getProject(), data);
List<Language> models = this.builderFactory.builder(LanguageBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(lookup.getProject(), data);
long count = (lookup.getMetadata() != null && lookup.getMetadata().getCountAll()) ? query.count() : models.size();
this.auditService.track(AuditableAction.Language_Query, "lookup", lookup);
@ -97,8 +95,8 @@ public class LanguageController {
this.censorFactory.censor(LanguageCensor.class).censor(fieldSet, null);
LanguageQuery query = this.queryFactory.query(LanguageQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).ids(id);
Language model = this.builderFactory.builder(LanguageBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(fieldSet, query.firstAs(fieldSet));
LanguageQuery query = this.queryFactory.query(LanguageQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).ids(id);
Language model = this.builderFactory.builder(LanguageBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(fieldSet, query.firstAs(fieldSet));
if (model == null)
throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{id, Language.class.getSimpleName()}, LocaleContextHolder.getLocale()));
@ -116,8 +114,8 @@ public class LanguageController {
this.censorFactory.censor(LanguageCensor.class).censor(fieldSet, null);
LanguageQuery query = this.queryFactory.query(LanguageQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).codes(code);
Language model = this.builderFactory.builder(LanguageBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(fieldSet, query.firstAs(fieldSet));
LanguageQuery query = this.queryFactory.query(LanguageQuery.class).authorize(EnumSet.of(Public)).codes(code);
Language model = this.builderFactory.builder(LanguageBuilder.class).authorize(EnumSet.of(Public)).build(fieldSet, query.firstAs(fieldSet));
if (model == null)
throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{code, Language.class.getSimpleName()}, LocaleContextHolder.getLocale()));
@ -139,10 +137,10 @@ public class LanguageController {
this.censorFactory.censor(LanguageCensor.class).censor(lookup.getProject(), null);
LanguageQuery query = lookup.enrich(this.queryFactory).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic);
LanguageQuery query = lookup.enrich(this.queryFactory).authorize(EnumSet.of(Public));
query.setOrder(new Ordering().addAscending(Language._ordinal));
List<LanguageEntity> data = query.collectAs(lookup.getProject());
List<Language> models = this.builderFactory.builder(LanguageBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(lookup.getProject(), data);
List<Language> models = this.builderFactory.builder(LanguageBuilder.class).authorize(EnumSet.of(Public)).build(lookup.getProject(), data);
long count = (lookup.getMetadata() != null && lookup.getMetadata().getCountAll()) ? query.count() : models.size();

12
dmp-backend/web/src/main/java/eu/eudat/controllers/LockController.java
View File

@ -85,9 +85,9 @@ public class LockController {
this.censorFactory.censor(LockCensor.class).censor(lookup.getProject(), null);
LockQuery query = lookup.enrich(this.queryFactory).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic);
LockQuery query = lookup.enrich(this.queryFactory).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission);
List<LockEntity> data = query.collectAs(lookup.getProject());
List<Lock> models = this.builderFactory.builder(LockBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(lookup.getProject(), data);
List<Lock> models = this.builderFactory.builder(LockBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(lookup.getProject(), data);
long count = (lookup.getMetadata() != null && lookup.getMetadata().getCountAll()) ? query.count() : models.size();
this.auditService.track(AuditableAction.Lock_Query, "lookup", lookup);
@ -101,8 +101,8 @@ public class LockController {
this.censorFactory.censor(LockCensor.class).censor(fieldSet, null);
LockQuery query = this.queryFactory.query(LockQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).ids(id);
Lock model = this.builderFactory.builder(LockBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(fieldSet, query.firstAs(fieldSet));
LockQuery query = this.queryFactory.query(LockQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).ids(id);
Lock model = this.builderFactory.builder(LockBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(fieldSet, query.firstAs(fieldSet));
if (model == null)
throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{id, Lock.class.getSimpleName()}, LocaleContextHolder.getLocale()));
@ -137,8 +137,8 @@ public class LockController {
this.censorFactory.censor(LockCensor.class).censor(fieldSet, null);
LockQuery query = this.queryFactory.query(LockQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).targetIds(targetId);
Lock model = this.builderFactory.builder(LockBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(fieldSet, query.firstAs(fieldSet));
LockQuery query = this.queryFactory.query(LockQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).targetIds(targetId);
Lock model = this.builderFactory.builder(LockBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(fieldSet, query.firstAs(fieldSet));
if (model == null)
throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{targetId, Lock.class.getSimpleName()}, LocaleContextHolder.getLocale()));

8
dmp-backend/web/src/main/java/eu/eudat/controllers/PrefillingSourceController.java
View File

@ -89,9 +89,9 @@ public class PrefillingSourceController {
this.censorFactory.censor(PrefillingSourceCensor.class).censor(lookup.getProject(), null);
PrefillingSourceQuery query = lookup.enrich(this.queryFactory).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic);
PrefillingSourceQuery query = lookup.enrich(this.queryFactory).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission);
List<PrefillingSourceEntity> data = query.collectAs(lookup.getProject());
List<PrefillingSource> models = this.builderFactory.builder(PrefillingSourceBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(lookup.getProject(), data);
List<PrefillingSource> models = this.builderFactory.builder(PrefillingSourceBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(lookup.getProject(), data);
long count = (lookup.getMetadata() != null && lookup.getMetadata().getCountAll()) ? query.count() : models.size();
this.auditService.track(AuditableAction.PrefillingSource_Query, "lookup", lookup);
@ -105,8 +105,8 @@ public class PrefillingSourceController {
this.censorFactory.censor(PrefillingSourceCensor.class).censor(fieldSet, null);
PrefillingSourceQuery query = this.queryFactory.query(PrefillingSourceQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).ids(id);
PrefillingSource model = this.builderFactory.builder(PrefillingSourceBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(fieldSet, query.firstAs(fieldSet));
PrefillingSourceQuery query = this.queryFactory.query(PrefillingSourceQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).ids(id);
PrefillingSource model = this.builderFactory.builder(PrefillingSourceBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(fieldSet, query.firstAs(fieldSet));
if (model == null)
throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{id, PrefillingSource.class.getSimpleName()}, LocaleContextHolder.getLocale()));

8
dmp-backend/web/src/main/java/eu/eudat/controllers/ReferenceController.java
View File

@ -81,9 +81,9 @@ public class ReferenceController {
this.censorFactory.censor(ReferenceCensor.class).censor(lookup.getProject(), null);
ReferenceQuery query = lookup.enrich(this.queryFactory).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic);
ReferenceQuery query = lookup.enrich(this.queryFactory).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission);
List<ReferenceEntity> data = query.collectAs(lookup.getProject());
List<Reference> models = this.builderFactory.builder(ReferenceBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(lookup.getProject(), data);
List<Reference> models = this.builderFactory.builder(ReferenceBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(lookup.getProject(), data);
long count = (lookup.getMetadata() != null && lookup.getMetadata().getCountAll()) ? query.count() : models.size();
this.auditService.track(AuditableAction.Reference_Query, "lookup", lookup);
@ -111,8 +111,8 @@ public class ReferenceController {
this.censorFactory.censor(ReferenceCensor.class).censor(fieldSet, null);
ReferenceQuery query = this.queryFactory.query(ReferenceQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).ids(id);
Reference model = this.builderFactory.builder(ReferenceBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(fieldSet, query.firstAs(fieldSet));
ReferenceQuery query = this.queryFactory.query(ReferenceQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).ids(id);
Reference model = this.builderFactory.builder(ReferenceBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(fieldSet, query.firstAs(fieldSet));
if (model == null)
throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{id, Reference.class.getSimpleName()}, LocaleContextHolder.getLocale()));

13
dmp-backend/web/src/main/java/eu/eudat/controllers/ReferenceTypeController.java
View File

@ -5,7 +5,6 @@ import eu.eudat.audit.AuditableAction;
import eu.eudat.authorization.AuthorizationFlags;
import gr.cite.tools.validation.ValidationFilterAnnotation;
import eu.eudat.data.ReferenceTypeEntity;
import eu.eudat.model.Reference;
import eu.eudat.model.ReferenceType;
import eu.eudat.model.builder.ReferenceTypeBuilder;
import eu.eudat.model.censorship.ReferenceTypeCensor;
@ -81,9 +80,9 @@ public class ReferenceTypeController{
this.censorFactory.censor(ReferenceTypeCensor.class).censor(lookup.getProject(), null);
ReferenceTypeQuery query = lookup.enrich(this.queryFactory).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic);
ReferenceTypeQuery query = lookup.enrich(this.queryFactory).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission);
List<ReferenceTypeEntity> data = query.collectAs(lookup.getProject());
List<ReferenceType> models = this.builderFactory.builder(ReferenceTypeBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(lookup.getProject(), data);
List<ReferenceType> models = this.builderFactory.builder(ReferenceTypeBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(lookup.getProject(), data);
long count = (lookup.getMetadata() != null && lookup.getMetadata().getCountAll()) ? query.count() : models.size();
this.auditService.track(AuditableAction.ReferenceType_Query, "lookup", lookup);
@ -97,8 +96,8 @@ public class ReferenceTypeController{
this.censorFactory.censor(ReferenceTypeCensor.class).censor(fieldSet, null);
ReferenceTypeQuery query = this.queryFactory.query(ReferenceTypeQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).ids(id);
ReferenceType model = this.builderFactory.builder(ReferenceTypeBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(fieldSet, query.firstAs(fieldSet));
ReferenceTypeQuery query = this.queryFactory.query(ReferenceTypeQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).ids(id);
ReferenceType model = this.builderFactory.builder(ReferenceTypeBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(fieldSet, query.firstAs(fieldSet));
if (model == null)
throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{id, ReferenceType.class.getSimpleName()}, LocaleContextHolder.getLocale()));
@ -116,8 +115,8 @@ public class ReferenceTypeController{
this.censorFactory.censor(ReferenceTypeCensor.class).censor(fieldSet, null);
ReferenceTypeQuery query = this.queryFactory.query(ReferenceTypeQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).codes(code);
ReferenceType model = this.builderFactory.builder(ReferenceTypeBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(fieldSet, query.firstAs(fieldSet));
ReferenceTypeQuery query = this.queryFactory.query(ReferenceTypeQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).codes(code);
ReferenceType model = this.builderFactory.builder(ReferenceTypeBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(fieldSet, query.firstAs(fieldSet));
if (model == null)
throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{code, ReferenceType.class.getSimpleName()}, LocaleContextHolder.getLocale()));

13
dmp-backend/web/src/main/java/eu/eudat/controllers/SupportiveMaterialController.java
View File

@ -1,11 +1,9 @@
package eu.eudat.controllers;
import com.fasterxml.jackson.core.JsonProcessingException;
import com.tdunning.math.stats.Sort;
import eu.eudat.audit.AuditableAction;
import eu.eudat.authorization.AuthorizationFlags;
import eu.eudat.commons.enums.SupportiveMaterialFieldType;
import eu.eudat.service.storage.StorageFileService;
import gr.cite.tools.fieldset.BaseFieldSet;
import gr.cite.tools.validation.ValidationFilterAnnotation;
import eu.eudat.data.SupportiveMaterialEntity;
@ -17,7 +15,6 @@ import eu.eudat.model.result.QueryResult;
import eu.eudat.query.SupportiveMaterialQuery;
import eu.eudat.query.lookup.SupportiveMaterialLookup;
import eu.eudat.service.supportivematerial.SupportiveMaterialService;
import gr.cite.commons.web.authz.service.AuthorizationService;
import gr.cite.tools.auditing.AuditService;
import gr.cite.tools.data.builder.BuilderFactory;
import gr.cite.tools.data.censor.CensorFactory;
@ -83,9 +80,9 @@ public class SupportiveMaterialController {
this.censorFactory.censor(SupportiveMaterialCensor.class).censor(lookup.getProject(), null);
SupportiveMaterialQuery query = lookup.enrich(this.queryFactory).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic);
SupportiveMaterialQuery query = lookup.enrich(this.queryFactory).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission);
List<SupportiveMaterialEntity> data = query.collectAs(lookup.getProject());
List<SupportiveMaterial> models = this.builderFactory.builder(SupportiveMaterialBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(lookup.getProject(), data);
List<SupportiveMaterial> models = this.builderFactory.builder(SupportiveMaterialBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(lookup.getProject(), data);
long count = (lookup.getMetadata() != null && lookup.getMetadata().getCountAll()) ? query.count() : models.size();
this.auditService.track(AuditableAction.SupportiveMaterial_Query, "lookup", lookup);
@ -99,8 +96,8 @@ public class SupportiveMaterialController {
this.censorFactory.censor(SupportiveMaterialCensor.class).censor(fieldSet, null);
SupportiveMaterialQuery query = this.queryFactory.query(SupportiveMaterialQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).ids(id);
SupportiveMaterial model = this.builderFactory.builder(SupportiveMaterialBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(fieldSet, query.firstAs(fieldSet));
SupportiveMaterialQuery query = this.queryFactory.query(SupportiveMaterialQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).ids(id);
SupportiveMaterial model = this.builderFactory.builder(SupportiveMaterialBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(fieldSet, query.firstAs(fieldSet));
if (model == null)
throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{id, SupportiveMaterial.class.getSimpleName()}, LocaleContextHolder.getLocale()));
@ -117,7 +114,7 @@ public class SupportiveMaterialController {
logger.debug("querying {}", SupportiveMaterial.class.getSimpleName());
SupportiveMaterialQuery query = this.queryFactory.query(SupportiveMaterialQuery.class).types(SupportiveMaterialFieldType.of(type)).languageCodes(language).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic);
SupportiveMaterialQuery query = this.queryFactory.query(SupportiveMaterialQuery.class).types(SupportiveMaterialFieldType.of(type)).languageCodes(language).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission);
List<SupportiveMaterialEntity> data = query.collectAs(new BaseFieldSet().ensure(SupportiveMaterial._id).ensure(SupportiveMaterial._payload));
byte[] content;
if (data.size() == 1) content = data.getFirst().getPayload().getBytes();

9
dmp-backend/web/src/main/java/eu/eudat/controllers/TagController.java
View File

@ -23,7 +23,6 @@ import gr.cite.tools.fieldset.FieldSet;
import gr.cite.tools.logging.LoggerService;
import gr.cite.tools.logging.MapLogEntry;
import org.slf4j.LoggerFactory;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.context.MessageSource;
import org.springframework.context.i18n.LocaleContextHolder;
import org.springframework.transaction.annotation.Transactional;
@ -71,10 +70,10 @@ public class TagController {
this.censorFactory.censor(TagCensor.class).censor(lookup.getProject(), null);
TagQuery query = lookup.enrich(this.queryFactory).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic);
TagQuery query = lookup.enrich(this.queryFactory).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission);
List<TagEntity> data = query.collectAs(lookup.getProject());
List<Tag> models = this.builderFactory.builder(TagBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(lookup.getProject(), data);
List<Tag> models = this.builderFactory.builder(TagBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(lookup.getProject(), data);
long count = (lookup.getMetadata() != null && lookup.getMetadata().getCountAll()) ? query.count() : models.size();
this.auditService.track(AuditableAction.Tag_Query, "lookup", lookup);
@ -88,8 +87,8 @@ public class TagController {
this.censorFactory.censor(TagCensor.class).censor(fieldSet, null);
TagQuery query = this.queryFactory.query(TagQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).ids(id);
Tag model = this.builderFactory.builder(TagBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(fieldSet, query.firstAs(fieldSet));
TagQuery query = this.queryFactory.query(TagQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).ids(id);
Tag model = this.builderFactory.builder(TagBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(fieldSet, query.firstAs(fieldSet));
if (model == null)
throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{id, Tag.class.getSimpleName()}, LocaleContextHolder.getLocale()));

8
dmp-backend/web/src/main/java/eu/eudat/controllers/TenantController.java
View File

@ -82,10 +82,10 @@ public class TenantController {
logger.debug("querying {}", Tenant.class.getSimpleName());
this.censorFactory.censor(TenantCensor.class).censor(lookup.getProject(), null);
TenantQuery query = lookup.enrich(this.queryFactory).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic);
TenantQuery query = lookup.enrich(this.queryFactory).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission);
List<TenantEntity> data = query.collectAs(lookup.getProject());
List<Tenant> models = this.builderFactory.builder(TenantBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(lookup.getProject(), data);
List<Tenant> models = this.builderFactory.builder(TenantBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(lookup.getProject(), data);
for (Tenant model : models) {
models.set(models.indexOf(model), this.tenantService.decryptTenant(model));
}
@ -102,8 +102,8 @@ public class TenantController {
this.censorFactory.censor(TenantCensor.class).censor(fieldSet, null);
TenantQuery query = this.queryFactory.query(TenantQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).ids(id);
Tenant model = this.builderFactory.builder(TenantBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(fieldSet, query.firstAs(fieldSet));
TenantQuery query = this.queryFactory.query(TenantQuery.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).ids(id);
Tenant model = this.builderFactory.builder(TenantBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermission).build(fieldSet, query.firstAs(fieldSet));
if (model == null)
throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{id, Tenant.class.getSimpleName()}, LocaleContextHolder.getLocale()));

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