Adding migration scripts for Dmp, DmpReference, Description and DescriptionReference entities, other fixes / clear up dmp entity

dmp-backend/core/src/main/java/eu/eudat/data/DescriptionEntity.java

@@ -5,15 +5,13 @@ import eu.eudat.commons.enums.IsActive;
 import eu.eudat.data.converters.DateToUTCConverter;
 import eu.eudat.data.converters.enums.DescriptionStatusConverter;
 import eu.eudat.data.converters.enums.IsActiveConverter;
-import jakarta.persistence.Column;
+import jakarta.persistence.*;
-import jakarta.persistence.Convert;
-import jakarta.persistence.Id;
 
 import java.time.Instant;
 import java.util.UUID;
 
-//@Entity
+@Entity
-//@Table(name = "\"Description\"")
+@Table(name = "\"Description\"")
 public class DescriptionEntity {
 
     @Id

dmp-backend/core/src/main/java/eu/eudat/data/DescriptionReferenceEntity.java

@@ -8,8 +8,8 @@ import jakarta.persistence.*;
 import java.time.Instant;
 import java.util.UUID;
 
-//@Entity
+@Entity
-//@Table(name = "\"DescriptionReference\"")
+@Table(name = "\"DescriptionReference\"")
 public class DescriptionReferenceEntity {
 
     @Id

dmp-backend/core/src/main/java/eu/eudat/data/DmpEntity.java

@@ -10,9 +10,8 @@ import org.hibernate.annotations.GenericGenerator;
 import java.time.Instant;
 import java.util.UUID;
 
-//TODO: (thgiannos) Wire up when all other dependent entities are refactored
+@Entity
-//@Entity
+@Table(name = "\"Dmp\"")
-//@Table(name = "\"DMP\"")
 public class DmpEntity {
 
     @Id
@@ -85,73 +84,23 @@ public class DmpEntity {
 
     public static final String _isActive = "isActive";
 
-    @Column(name = "\"finalized_at\"")
+    @Column(name = "finalized_at")
     @Convert(converter = DateToUTCConverter.class)
     private Instant finalizedAt;
 
     public static final String _finalizedAt = "finalizedAt";
 
-    @Column(name = "\"published_at\"")
+    @Column(name = "published_at")
     @Convert(converter = DateToUTCConverter.class)
     private Instant publishedAt;
 
     public static final String _publishedAt = "publishedAt";
 
-    //    @ManyToOne(fetch = FetchType.LAZY)
+    @Column(name = "creator")
-//    @JoinColumn(name = "\"Grant\"")
-    //TODO: (thgiannos) Previously 'Grant'
-    private UUID grant;
-
-    public static final String _grant = "grant";
-
-    //TODO: (thgiannos) Handle using the DMPEntity builder
-//    @OneToMany(fetch = FetchType.LAZY, mappedBy = "dmp")
-//    private Set<DMPDatasetProfile> associatedDmps;
-
-    //    @ManyToOne(fetch = FetchType.LAZY)
-//    @JoinColumn(name = "\"Profile\"")
-    //TODO: (thgiannos) Previously 'DMPProfile'
-    private UUID profile;
-
-    public static final String _profile = "profile";
-
-    //    @ManyToOne(fetch = FetchType.LAZY)
-//    @JoinColumn(name = "\"Creator\"")
-    //TODO: (thgiannos) Previously 'UserInfo'
     private UUID creator;
 
     public static final String _creator = "creator";
 
-    //TODO: (thgiannos) Handle using the DMPEntity builder
-//    @OneToMany(mappedBy = "entityId", fetch = FetchType.LAZY)
-//    private Set<EntityDoiEntity> dois;
-
-    //    @ManyToOne(fetch = FetchType.LAZY)
-//    @JoinColumn(name = "\"Project\"")
-    //TODO: (thgiannos) Previously 'Project'
-    private UUID project;
-
-    public static final String _project = "project";
-
-    // TODO: (thgiannos) Implement join entity
-//    @OneToMany(fetch = FetchType.LAZY)
-//    @JoinTable(name = "\"DMPOrganisation\"",
-//            joinColumns = {@JoinColumn(name = "\"DMP\"", referencedColumnName = "\"ID\"")},
-//            inverseJoinColumns = {@JoinColumn(name = "\"Organisation\"", referencedColumnName = "\"ID\"")}
-//    )
-//    private Set<Organisation> organisations;
-
-    // TODO: (thgiannos) Implement join entity
-//    @OneToMany(fetch = FetchType.LAZY)
-//    @JoinTable(name = "\"DMPResearcher\"",
-//            joinColumns = {@JoinColumn(name = "\"DMP\"", referencedColumnName = "\"ID\"")},
-//            inverseJoinColumns = {@JoinColumn(name = "\"Researcher\"", referencedColumnName = "\"ID\"")}
-//    )
-//    private Set<Researcher> researchers;
-
-    //TODO: (thgiannos) Handle using the DMPEntity builder
-//    private Set<UserDMP> users;
-
     public UUID getId() {
         return id;
     }
@@ -272,22 +221,6 @@ public class DmpEntity {
         this.publishedAt = publishedAt;
     }
 
-    public UUID getGrant() {
-        return grant;
-    }
-
-    public void setGrant(UUID grant) {
-        this.grant = grant;
-    }
-
-    public UUID getProfile() {
-        return profile;
-    }
-
-    public void setProfile(UUID profile) {
-        this.profile = profile;
-    }
-
     public UUID getCreator() {
         return creator;
     }
@@ -296,12 +229,4 @@ public class DmpEntity {
         this.creator = creator;
     }
 
-    public UUID getProject() {
-        return project;
-    }
-
-    public void setProject(UUID project) {
-        this.project = project;
-    }
-
 }

dmp-backend/core/src/main/java/eu/eudat/model/Dmp.java

@@ -69,22 +69,10 @@ public class Dmp {
 
     public static final String _publishedAt = "publishedAt";
 
-    private UUID grant;
-
-    public static final String _grant = "grant";
-
-    private UUID profile;
-
-    public static final String _profile = "profile";
-
     private UUID creator;
 
     public static final String _creator = "creator";
 
-    private UUID project;
-
-    public static final String _project = "project";
-
     private String hash;
 
     public static final String _hash = "hash";
@@ -216,22 +204,6 @@ public class Dmp {
         this.publishedAt = publishedAt;
     }
 
-    public UUID getGrant() {
-        return grant;
-    }
-
-    public void setGrant(UUID grant) {
-        this.grant = grant;
-    }
-
-    public UUID getProfile() {
-        return profile;
-    }
-
-    public void setProfile(UUID profile) {
-        this.profile = profile;
-    }
-
     public UUID getCreator() {
         return creator;
     }
@@ -240,14 +212,6 @@ public class Dmp {
         this.creator = creator;
     }
 
-    public UUID getProject() {
-        return project;
-    }
-
-    public void setProject(UUID project) {
-        this.project = project;
-    }
-
     public String getHash() {
         return hash;
     }

dmp-db-scema/updates/00.01.004_Align_Dmp_blueprint_table.sql

@@ -1,3 +1,9 @@
+DO $$DECLARE
+   this_version CONSTANT varchar := '00.01.004';
+BEGIN
+   PERFORM * FROM "DBVersion" WHERE version = this_version;
+   IF FOUND THEN RETURN; END IF;
+
 ALTER TABLE public."DMPProfile" RENAME TO "DmpBlueprint";
 
 ALTER TABLE public."DmpBlueprint" RENAME "ID" TO id;
@@ -23,4 +29,8 @@ UPDATE public."DmpBlueprint" SET is_active = 1;
 UPDATE public."DmpBlueprint" SET is_active = 0 where status = 99;
 UPDATE public."DmpBlueprint" SET status = 0 where is_active = 0;
 
-ALTER TABLE public."DmpBlueprint" ALTER COLUMN is_active SET NOT NULL;
+ALTER TABLE public."DmpBlueprint" ALTER COLUMN is_active SET NOT NULL;
+
+INSERT INTO public."DBVersion" VALUES ('DMPDB', '00.01.004', '2023-10-27 12:00:00.000000+02', now(), 'Align dmp blueprint table.');
+
+END$$;

dmp-db-scema/updates/00.01.005_Add_Dmp_table.sql

@@ -0,0 +1,29 @@
+DO $$DECLARE
+   this_version CONSTANT varchar := '00.01.005';
+BEGIN
+   PERFORM * FROM "DBVersion" WHERE version = this_version;
+   IF FOUND THEN RETURN; END IF;
+
+CREATE TABLE IF NOT EXISTS public."Dmp"
+(
+    "id" uuid NOT NULL,
+    "label" character varying(250) COLLATE pg_catalog."default" NOT NULL,
+    "version" integer NOT NULL,
+    "status" smallint NOT NULL DEFAULT 0,
+    "properties" text COLLATE pg_catalog."default",
+    "dmp_properties" text COLLATE pg_catalog."default",
+    "group_id" uuid,
+    "description" text COLLATE pg_catalog."default",
+    "is_public" boolean NOT NULL DEFAULT false,
+    "extra_properties" text COLLATE pg_catalog."default",
+    "created_at" timestamp without time zone NOT NULL DEFAULT now(),
+    "updated_at" timestamp without time zone NOT NULL DEFAULT now(),
+    "is_active" smallint NOT NULL DEFAULT 1,
+    "finalized_at" timestamp without time zone,
+    "published_at" timestamp without time zone,
+    CONSTRAINT "Dmp_pkey" PRIMARY KEY (id)
+)
+
+INSERT INTO public."DBVersion" VALUES ('DMPDB', '00.01.005', '2023-10-27 12:00:00.000000+02', now(), 'Add Dmp table.');
+
+END$$;

dmp-db-scema/updates/00.01.006_Add_Dmp_reference_table.sql

@@ -0,0 +1,23 @@
+DO $$DECLARE
+   this_version CONSTANT varchar := '00.01.006';
+BEGIN
+   PERFORM * FROM "DBVersion" WHERE version = this_version;
+   IF FOUND THEN RETURN; END IF;
+
+CREATE TABLE IF NOT EXISTS public."DmpReference"
+(
+    "id" uuid NOT NULL,
+    "dmp_id" uuid NOT NULL,
+    "reference_id" uuid NOT NULL,
+    "data" text COLLATE pg_catalog."default",
+    "created_at" timestamp without time zone NOT NULL DEFAULT now(),
+    "updated_at" timestamp without time zone NOT NULL DEFAULT now(),
+    "is_active" smallint NOT NULL DEFAULT 1,
+    CONSTRAINT "DmpReference_pkey" PRIMARY KEY (id),
+    CONSTRAINT "DmpReference_dmp_id_fkey" FOREIGN KEY ("dmp_id") REFERENCES public."Dmp"("id"),
+    CONSTRAINT "DmpReference_reference_id_fkey" FOREIGN KEY ("reference_id") REFERENCES public."Reference"("id")
+)
+
+INSERT INTO public."DBVersion" VALUES ('DMPDB', '00.01.006', '2023-10-27 12:00:00.000000+02', now(), 'Add DescriptionReference table.');
+
+END$$;

dmp-db-scema/updates/00.01.007_Add_Description_table_former_Dataset.sql

@@ -0,0 +1,30 @@
+DO $$DECLARE
+   this_version CONSTANT varchar := '00.01.007';
+BEGIN
+   PERFORM * FROM "DBVersion" WHERE version = this_version;
+   IF FOUND THEN RETURN; END IF;
+
+CREATE TABLE IF NOT EXISTS public."Description"
+(
+    "id" uuid NOT NULL,
+    "label" character varying(250) COLLATE pg_catalog."default" NOT NULL,
+    "dmp" uuid,
+    "uri" character varying(250) COLLATE pg_catalog."default",
+    "properties" text COLLATE pg_catalog."default",
+    "profile" uuid,
+    "reference" text COLLATE pg_catalog."default",
+    "status" smallint NOT NULL DEFAULT 0,
+    "description" text COLLATE pg_catalog."default",
+    "dmp_section_index" integer NOT NULL,
+    "created_at" timestamp without time zone NOT NULL DEFAULT now(),
+    "updated_at" timestamp without time zone NOT NULL DEFAULT now(),
+    "is_active" smallint NOT NULL DEFAULT 1,
+    "finalized_at" timestamp without time zone,
+    CONSTRAINT "Description_pkey" PRIMARY KEY (id),
+    CONSTRAINT "Description_dmp_fkey" FOREIGN KEY ("dmp") REFERENCES public."Dmp"("id"),
+    CONSTRAINT "Description_profile_fkey" FOREIGN KEY ("profile") REFERENCES public."DescriptionTemplate"("ID")
+)
+
+INSERT INTO public."DBVersion" VALUES ('DMPDB', '00.01.007', '2023-10-27 12:00:00.000000+02', now(), 'Add Description table (former Dataset).');
+
+END$$;

dmp-db-scema/updates/00.01.008_Add_DescriptionReference_table.sql

@@ -0,0 +1,23 @@
+DO $$DECLARE
+   this_version CONSTANT varchar := '00.01.008';
+BEGIN
+   PERFORM * FROM "DBVersion" WHERE version = this_version;
+   IF FOUND THEN RETURN; END IF;
+
+CREATE TABLE IF NOT EXISTS public."DescriptionReference"
+(
+    "id" uuid NOT NULL,
+    "data" text COLLATE pg_catalog."default" NOT NULL,
+    "description_id" uuid NOT NULL,
+    "reference_id" uuid NOT NULL,
+    "created_at" timestamp without time zone NOT NULL DEFAULT now(),
+    "updated_at" timestamp without time zone NOT NULL DEFAULT now(),
+    "is_active" smallint NOT NULL DEFAULT 1,
+    CONSTRAINT "DescriptionReference_pkey" PRIMARY KEY (id),
+    CONSTRAINT "DescriptionReference_description_fkey" FOREIGN KEY ("description_id") REFERENCES public."Description"("id"),
+    CONSTRAINT "DescriptionReference_reference_fkey" FOREIGN KEY ("reference_id") REFERENCES public."Reference"("id")
+)
+
+INSERT INTO public."DBVersion" VALUES ('DMPDB', '00.01.008', '2023-10-27 12:00:00.000000+02', now(), 'Add DescriptionReference table.');
+
+END$$;