Partially fix Deposit Logic and add support for upcomming micro-services

dmp-backend/core/pom.xml

@@ -35,6 +35,11 @@
             <artifactId>oidc-authz</artifactId>
             <version>2.1.0</version>
         </dependency>
+        <dependency>
+            <groupId>gr.cite.opendmp</groupId>
+            <artifactId>repositorydepositbase</artifactId>
+            <version>1.0.4</version>
+        </dependency>
     </dependencies>
 
     <build>

dmp-backend/core/src/main/java/eu/eudat/configurations/DepositConfiguration.java

@@ -0,0 +1,35 @@
+package eu.eudat.configurations;
+
+import eu.eudat.depositinterface.repository.RepositoryDeposit;
+import eu.eudat.repository.DepositRepository;
+import org.springframework.beans.factory.annotation.Autowired;
+import org.springframework.beans.factory.annotation.Qualifier;
+import org.springframework.boot.context.properties.EnableConfigurationProperties;
+import org.springframework.context.annotation.Bean;
+import org.springframework.context.annotation.Configuration;
+import org.springframework.web.reactive.function.client.WebClient;
+
+import java.util.ArrayList;
+import java.util.List;
+
+@Configuration
+@EnableConfigurationProperties({DepositProperties.class})
+public class DepositConfiguration {
+
+    private final DepositProperties properties;
+
+    @Autowired
+    public DepositConfiguration(DepositProperties properties) {
+        this.properties = properties;
+    }
+
+    @Bean
+    @Qualifier("depositClients")
+    public List<RepositoryDeposit> depositClients() {
+        List<RepositoryDeposit> clients = new ArrayList<>();
+        for (String url: properties.getUrls()) {
+            clients.add(new DepositRepository(WebClient.builder().baseUrl(url + "/api/deposit").build()));
+        }
+        return clients;
+    }
+}

dmp-backend/core/src/main/java/eu/eudat/configurations/DepositProperties.java

@@ -0,0 +1,25 @@
+package eu.eudat.configurations;
+
+import org.springframework.boot.context.properties.ConfigurationProperties;
+import org.springframework.boot.context.properties.bind.ConstructorBinding;
+
+import java.util.List;
+
+@ConfigurationProperties(prefix = "deposit")
+public class DepositProperties {
+
+    private List<String> urls;
+
+    @ConstructorBinding
+    public DepositProperties(List<String> urls) {
+        this.urls = urls;
+    }
+
+    public List<String> getUrls() {
+        return urls;
+    }
+
+    public void setUrls(List<String> urls) {
+        this.urls = urls;
+    }
+}

dmp-backend/core/src/main/java/eu/eudat/repository/DepositRepository.java

@@ -0,0 +1,39 @@
+package eu.eudat.repository;
+
+import eu.eudat.depositinterface.models.DMPDepositModel;
+import eu.eudat.depositinterface.repository.RepositoryDeposit;
+import eu.eudat.depositinterface.repository.RepositoryDepositConfiguration;
+import org.springframework.core.ParameterizedTypeReference;
+import org.springframework.web.reactive.function.client.WebClient;
+
+import java.util.List;
+
+public class DepositRepository implements RepositoryDeposit {
+
+    private final WebClient depositClient;
+
+    public DepositRepository(WebClient depositClient) {
+        this.depositClient = depositClient;
+    }
+
+
+    @Override
+    public String deposit(String repositoryId, DMPDepositModel dmpDepositModel, String repositoryAccessToken) throws Exception {
+        return depositClient.post().uri("/" + repositoryId, uriBuilder -> uriBuilder.queryParam("authToken", repositoryAccessToken).build()).bodyValue(dmpDepositModel).exchangeToMono(mono -> mono.bodyToMono(String.class)).block();
+    }
+
+    @Override
+    public String authenticate(String repositoryId, String code) {
+        return depositClient.get().uri("/authenticate/" + repositoryId, uriBuilder -> uriBuilder.queryParam("authToken", code).build()).exchangeToMono(mono -> mono.bodyToMono(String.class)).block();
+    }
+
+    @Override
+    public List<RepositoryDepositConfiguration> getConfiguration() {
+        return depositClient.get().uri("/configuration").exchangeToMono(mono -> mono.bodyToMono(new ParameterizedTypeReference<List<RepositoryDepositConfiguration>>() {})).block();
+    }
+
+    @Override
+    public String getLogo(String repositoryId) {
+        return depositClient.get().uri("/logo/" + repositoryId).exchangeToMono(mono -> mono.bodyToMono(String.class)).block();
+    }
+}

dmp-backend/web/src/main/java/eu/eudat/logic/managers/DataManagementPlanManager.java

@@ -1960,6 +1960,7 @@ public class DataManagementPlanManager {
         return fileEnvelope;
     }
 
+    @Transactional
     public FileEnvelope getRDAJsonDocument(String id, Principal principal) throws Exception {
         DMP dmp = databaseRepository.getDmpDao().find(UUID.fromString(id));
         if (!dmp.isPublic() && dmp.getUsers().stream().noneMatch(userInfo -> userInfo.getUser().getId() == principal.getId()))
@@ -2464,6 +2465,7 @@ public class DataManagementPlanManager {
         return null;
     }
 
+    @Transactional
     public Doi createDoi(DepositRequest depositRequest, Principal principal) throws Exception {
         DMP dmp = this.apiContext.getOperationsContext().getDatabaseRepository().getDmpDao().find(UUID.fromString(depositRequest.getDmpId()));
         if (!isUserOwnerOfDmp(dmp, principal))

dmp-backend/web/src/main/java/eu/eudat/logic/managers/DepositManager.java

@@ -6,10 +6,14 @@ import eu.eudat.models.data.doi.DepositRequest;
 import eu.eudat.models.data.doi.Doi;
 import eu.eudat.models.data.doi.RepositoryConfig;
 import eu.eudat.models.data.security.Principal;
+import jakarta.transaction.Transactional;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 import org.springframework.beans.factory.annotation.Autowired;
+import org.springframework.beans.factory.annotation.Qualifier;
+import org.springframework.core.ParameterizedTypeReference;
 import org.springframework.stereotype.Component;
+import org.springframework.web.reactive.function.client.WebClient;
 
 import java.util.ArrayList;
 import java.util.List;
@@ -19,18 +23,20 @@ import java.util.Optional;
 public class DepositManager {
     private static final Logger logger = LoggerFactory.getLogger(DepositManager.class);
 
-    private List<RepositoryDeposit> repositories;
+    //private List<RepositoryDeposit> repositories;
     private DataManagementPlanManager dataManagementPlanManager;
+    private final List<RepositoryDeposit> depositClients;
 
     @Autowired
-    public DepositManager(List<RepositoryDeposit> repositories, DataManagementPlanManager dataManagementPlanManager){
+    public DepositManager(/*List<RepositoryDeposit> repositories,*/ DataManagementPlanManager dataManagementPlanManager, @Qualifier("depositClients") List<RepositoryDeposit> depositClients){
-        this.repositories = repositories;
+        //this.repositories = repositories;
         this.dataManagementPlanManager = dataManagementPlanManager;
+        this.depositClients = depositClients;
     }
 
     public List<RepositoryConfig> getAvailableRepos() {
         List<RepositoryConfig> reposConfigModel = new ArrayList<>();
-        for (RepositoryDeposit r: this.repositories) {
+        for (RepositoryDeposit r: this.depositClients) {
             List<RepositoryDepositConfiguration> repoConf = r.getConfiguration();
             if(repoConf != null) {
                 for(RepositoryDepositConfiguration cf: repoConf){
@@ -43,7 +49,7 @@ public class DepositManager {
     }
 
     public String authenticate(String id, String code) {
-        for(RepositoryDeposit r: this.repositories){
+        for(RepositoryDeposit r: this.depositClients){
             if(r.getConfiguration().stream().anyMatch(x -> x.getRepositoryId().equals(id))){
                 return r.authenticate(id, code);
             }
@@ -51,12 +57,13 @@ public class DepositManager {
         return null;
     }
 
+    @Transactional
     public Doi deposit(DepositRequest depositRequest, Principal principal) throws Exception {
         return this.dataManagementPlanManager.createDoi(depositRequest, principal);
     }
 
     public String getRepositoryLogo(String repositoryId){
-        for(RepositoryDeposit r: this.repositories){
+        for(RepositoryDeposit r: this.depositClients){
             Optional<RepositoryDepositConfiguration> cf = r.getConfiguration().stream().filter(x -> x.getRepositoryId().equals(repositoryId)).findFirst();
             if(cf.isPresent()){
                 return cf.get().isHasLogo() ?  r.getLogo(repositoryId) : null;

dmp-backend/web/src/main/java/eu/eudat/logic/security/repositorydeposit/mapper/DMPToDepositMapper.java

@@ -5,6 +5,7 @@ import com.fasterxml.jackson.databind.ObjectMapper;
 import eu.eudat.data.old.*;
 import eu.eudat.depositinterface.models.*;
 import eu.eudat.logic.utilities.builders.XmlBuilder;
+import jakarta.transaction.Transactional;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 import org.w3c.dom.Document;
@@ -25,6 +26,7 @@ public class DMPToDepositMapper {
     private static final Logger logger = LoggerFactory.getLogger(DMPToDepositMapper.class);
     private static final ObjectMapper mapper = new ObjectMapper();
 
+    @Transactional
     public static DMPDepositModel fromDMP(DMP entity, FileEnvelope pdfFile, FileEnvelope jsonFile, File supportingFilesZip, String previousDOI) {
         DMPDepositModel deposit = new DMPDepositModel();
         deposit.setId(entity.getId());
@@ -49,6 +51,7 @@ public class DMPToDepositMapper {
         return deposit;
     }
 
+    @Transactional
     private static DatasetDepositModel fromDataset(Dataset entity){
         DatasetDepositModel deposit = new DatasetDepositModel();
         deposit.setLabel(entity.getLabel());

dmp-backend/web/src/main/java/eu/eudat/models/rda/mapper/DmpRDAMapper.java

@@ -88,20 +88,24 @@ public class DmpRDAMapper {
 					rda.getCost().add(CostRDAMapper.toRDA((Map)costl));
 				});
 			}
+			try {
 				UserInfo contactDb = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().find(UUID.fromString((String) extraProperties.get("contact")));
 				UserInfo contact = new UserInfo();
 				contact.setId(contactDb.getId());
 				contact.setName(contactDb.getName());
 				contact.setEmail(contactDb.getEmail());
-			if(contact.getEmail() == null){
+				if (contact.getEmail() == null) {
-				for(UserDMP userDMP: dmp.getUsers()){
+					for (UserDMP userDMP : dmp.getUsers()) {
-					if(userDMP.getDmp().getId() == dmp.getId() && userDMP.getUser().getEmail() != null){
+						if (userDMP.getDmp().getId() == dmp.getId() && userDMP.getUser().getEmail() != null) {
 							contact.setEmail(userDMP.getUser().getEmail());
 							break;
 						}
 					}
 				}
 				rda.setContact(ContactRDAMapper.toRDA(contact));
+			} catch (NoResultException e) {
+				logger.error(e.getMessage(), e);
+			}
 		}
 
 		/*UserInfo creator;

dmp-backend/web/src/main/resources/config/application.yml

@@ -14,5 +14,6 @@ spring:
       optional:classpath:config/elasticsearch.yml[.yml], optional:classpath:config/elasticsearch-${spring.profiles.active}.yml[.yml], optional:file:../config/elasticsearch-${spring.profiles.active}.yml[.yml],
       optional:classpath:config/file-path.yml[.yml], optional:classpath:config/file-path-${spring.profiles.active}.yml[.yml], optional:file:../config/file-path-${spring.profiles.active}.yml[.yml],
       optional:classpath:config/idpclaims.yml[.yml], optional:classpath:config/idpclaims-${spring.profiles.active}.yml[.yml], optional:file:../config/idpclaims-${spring.profiles.active}.yml[.yml],
-      optional:classpath:config/external.yml[.yml], optional:classpath:config/external-${spring.profiles.active}.yml[.yml], optional:file:../config/external-${spring.profiles.active}.yml[.yml]
+      optional:classpath:config/external.yml[.yml], optional:classpath:config/external-${spring.profiles.active}.yml[.yml], optional:file:../config/external-${spring.profiles.active}.yml[.yml],
-      optional:classpath:config/swagger.yml[.yml], optional:classpath:config/swagger-${spring.profiles.active}.yml[.yml], optional:file:../config/swagger-${spring.profiles.active}.yml[.yml]
+      optional:classpath:config/swagger.yml[.yml], optional:classpath:config/swagger-${spring.profiles.active}.yml[.yml], optional:file:../config/swagger-${spring.profiles.active}.yml[.yml],
+      optional:classpath:config/deposit.yml[.yml], optional:classpath:config/deposit-${spring.profiles.active}.yml[.yml], optional:file:../config/deposit-${spring.profiles.active}.yml[.yml]

dmp-backend/web/src/main/resources/config/deposit.yml

@@ -0,0 +1,3 @@
+deposit:
+  urls:
+    - http://localhost:8080