Dataset references mapped for public API

dmp-backend/core/src/main/java/eu/eudat/model/mapper/publicapi/DescriptionToPublicApiDatasetMapper.java

@@ -1,15 +1,37 @@
 package eu.eudat.model.mapper.publicapi;
 
 import eu.eudat.model.Description;
+import eu.eudat.model.publicapi.datasetprofile.DatasetProfilePublicModel;
+import eu.eudat.model.publicapi.datasetwizard.DataRepositoryPublicModel;
+import eu.eudat.model.publicapi.datasetwizard.ExternalDatasetPublicListingModel;
+import eu.eudat.model.publicapi.datasetwizard.RegistryPublicModel;
+import eu.eudat.model.publicapi.datasetwizard.ServicePublicModel;
 import eu.eudat.model.publicapi.overviewmodels.DatasetPublicModel;
 import org.springframework.stereotype.Component;
 
+import java.sql.Date;
+import java.util.Objects;
+
 @Component
 public class DescriptionToPublicApiDatasetMapper {
 
     public DatasetPublicModel toPublicModel(Description description) {
         DatasetPublicModel model = new DatasetPublicModel();
-        model.setId(description.getId());
+        model.setLabel(description.getLabel());
+        model.setDescription(description.getDescription());
+        model.setReference("");
+        model.setUri("");
+        model.setStatus(description.getStatus());
+
+        model.setProfile(DatasetProfilePublicModel.fromDataModel(description.getDescriptionTemplate()));
+        model.setRegistries(description.getDescriptionReferences().stream().map(RegistryPublicModel::fromDescriptionReference).filter(Objects::nonNull).toList());
+        model.setServices(description.getDescriptionReferences().stream().map(ServicePublicModel::fromDescriptionReference).filter(Objects::nonNull).toList());
+        model.setDataRepositories(description.getDescriptionReferences().stream().map(DataRepositoryPublicModel::fromDescriptionReference).filter(Objects::nonNull).toList());
+        model.setExternalDatasets(description.getDescriptionReferences().stream().map(ExternalDatasetPublicListingModel::fromDescriptionReference).filter(Objects::nonNull).toList());
+
+        model.setCreatedAt(Date.from(description.getCreatedAt()));
+        model.setModifiedAt(Date.from(description.getUpdatedAt()));
+
         return model;
     }
 

dmp-backend/core/src/main/java/eu/eudat/model/mapper/publicapi/DmpToPublicApiDmpListingMapper.java

@@ -20,7 +20,7 @@ public class DmpToPublicApiDmpListingMapper {
         model.setGroupId(dmp.getGroupId());
 
         model.setUsers(dmp.getDmpUsers().stream().map(UserInfoPublicModel::fromDmpUser).toList());
-        model.setResearchers(dmp.getDmpReferences().stream().map(ResearcherPublicModel::fromDmpReference).filter(Objects::isNull).toList());
+        model.setResearchers(dmp.getDmpReferences().stream().map(ResearcherPublicModel::fromDmpReference).filter(Objects::nonNull).toList());
 
         model.setCreatedAt(Date.from(dmp.getCreatedAt()));
         model.setModifiedAt(Date.from(dmp.getUpdatedAt()));

dmp-backend/core/src/main/java/eu/eudat/model/mapper/publicapi/DmpToPublicApiDmpMapper.java

@@ -1,6 +1,5 @@
 package eu.eudat.model.mapper.publicapi;
 
-import eu.eudat.data.DmpDescriptionTemplateEntity;
 import eu.eudat.data.EntityDoiEntity;
 import eu.eudat.model.Dmp;
 import eu.eudat.model.DmpDescriptionTemplate;
@@ -30,9 +29,9 @@ public class DmpToPublicApiDmpMapper {
         model.setProfile(dmp.getBlueprint().getLabel());
 
         model.setUsers(dmp.getDmpUsers().stream().map(UserInfoPublicModel::fromDmpUser).toList());
-        model.setResearchers(dmp.getDmpReferences().stream().map(ResearcherPublicModel::fromDmpReference).filter(Objects::isNull).toList());
+        model.setResearchers(dmp.getDmpReferences().stream().map(ResearcherPublicModel::fromDmpReference).filter(Objects::nonNull).toList());
         model.setGrant(GrantPublicOverviewModel.fromDmpReferences(dmp.getDmpReferences()));
-        model.setOrganisations(dmp.getDmpReferences().stream().map(OrganizationPublicModel::fromDmpReference).filter(Objects::isNull).toList());
+        model.setOrganisations(dmp.getDmpReferences().stream().map(OrganizationPublicModel::fromDmpReference).filter(Objects::nonNull).toList());
         model.setDois(doiEntities.stream().map(DoiPublicModel::fromDataModel).toList());
         model.setAssociatedProfiles(descriptionTemplates.stream().map(AssociatedProfilePublicModel::fromDmpDescriptionTemplate).toList());
 

dmp-backend/core/src/main/java/eu/eudat/model/publicapi/datasetwizard/DataRepositoryPublicModel.java

@@ -1,6 +1,10 @@
 package eu.eudat.model.publicapi.datasetwizard;
 
+import eu.eudat.commons.enums.ReferenceType;
 import eu.eudat.data.old.DataRepository;
+import eu.eudat.model.DescriptionReference;
+import eu.eudat.model.Reference;
+import eu.eudat.model.referencedefinition.Field;
 
 import java.util.Date;
 import java.util.UUID;
@@ -79,49 +83,6 @@ public class DataRepositoryPublicModel {
         this.source = source;
     }
 
-    public DataRepositoryPublicModel fromDataModel(DataRepository entity) {
-        this.id = entity.getId().toString();
-        this.pid = entity.getReference();
-        this.name = entity.getLabel();
-        this.uri = entity.getUri();
-        this.abbreviation = entity.getAbbreviation();
-        this.reference = entity.getReference();
-        String source1 = entity.getReference().substring(0, entity.getReference().indexOf(":"));
-        if (source1.equals("dmp")) {
-            this.source = "Internal";
-        } else {
-            this.source = source1;
-        }
-        return this;
-    }
-
-    public DataRepository toDataModel() {
-        DataRepository entity = new DataRepository();
-        if (this.id != null) {
-            entity.setId(UUID.fromString(this.id));
-        }
-        entity.setReference(this.pid);
-        entity.setLabel(this.name);
-        entity.setUri(this.uri);
-        entity.setCreated(new Date());
-        entity.setModified(new Date());
-        entity.setStatus((short) 0);
-        if (this.source != null && this.source.equals("Internal")) this.source = "dmp";
-        if (this.reference != null && !this.reference.trim().isEmpty()
-                && this.source != null && !this.source.trim().isEmpty()) {
-            if (this.source.equals(this.reference.substring(0, this.source.length()))) {
-                entity.setReference(this.reference);
-            } else {
-                entity.setReference(this.source.toLowerCase() + ":" + this.reference);
-            }
-        }
-
-        if (this.abbreviation != null)
-            entity.setAbbreviation(this.abbreviation);
-
-        return entity;
-    }
-
     public String generateLabel() {
         return this.getName();
     }
@@ -129,4 +90,21 @@ public class DataRepositoryPublicModel {
     public String getHint() {
         return null;
     }
+
+    public static DataRepositoryPublicModel fromDescriptionReference(DescriptionReference descriptionReference) {
+        if (descriptionReference.getReference().getType() != ReferenceType.DataRepositories)
+            return null;
+        DataRepositoryPublicModel model = new DataRepositoryPublicModel();
+        Reference reference = descriptionReference.getReference();
+        model.setId(reference.getId().toString());
+        model.setName(reference.getLabel());
+        model.setAbbreviation(reference.getAbbreviation());
+        model.setReference(reference.getReference());
+        model.setSource(reference.getSource());
+        model.setPid(reference.getReference());
+        Field uri = reference.getDefinition().getFields().stream().filter(x -> x.getCode().equals("uri")).toList().get(0);
+        if (uri != null) model.setUri(uri.getValue());
+
+        return model;
+    }
 }

dmp-backend/core/src/main/java/eu/eudat/model/publicapi/datasetwizard/ExternalDatasetPublicListingModel.java

@@ -1,6 +1,10 @@
 package eu.eudat.model.publicapi.datasetwizard;
 
+import eu.eudat.commons.enums.ReferenceType;
 import eu.eudat.data.old.ExternalDataset;
+import eu.eudat.model.DescriptionReference;
+import eu.eudat.model.Reference;
+import eu.eudat.model.referencedefinition.Field;
 
 import java.util.Date;
 import java.util.UUID;
@@ -103,46 +107,20 @@ public class ExternalDatasetPublicListingModel {
         this.source = source;
     }
 
-    public ExternalDatasetPublicListingModel fromDataModel(ExternalDataset entity) {
+    public static ExternalDatasetPublicListingModel fromDescriptionReference(DescriptionReference descriptionReference) {
-        this.id = entity.getId();
+        if (descriptionReference.getReference().getType() != ReferenceType.Datasets)
-        this.abbreviation = entity.getAbbreviation();
+            return null;
-        this.name = entity.getLabel();
+        ExternalDatasetPublicListingModel model = new ExternalDatasetPublicListingModel();
-        this.modified = entity.getModified();
+        Reference reference = descriptionReference.getReference();
-        this.created = entity.getCreated();
+        model.setId(reference.getId());
-        this.reference = entity.getReference();
+        model.setName(reference.getLabel());
-        String source1 = entity.getReference().substring(0, entity.getReference().indexOf(":"));
+        model.setAbbreviation(reference.getAbbreviation());
-        if (source1.equals("dmp")) {
+        model.setReference(reference.getReference());
-            this.source = "Internal";
+        model.setSource(reference.getSource());
-        } else {
+        model.setPid(reference.getReference());
-            this.source = source1;
+        Field uri = reference.getDefinition().getFields().stream().filter(x -> x.getCode().equals("uri")).toList().get(0);
-        }
+        if (uri != null) model.setUri(uri.getValue());
-        return this;
-    }
 
-    public ExternalDataset toDataModel() throws Exception {
+        return model;
-        ExternalDataset externalDataset = new ExternalDataset();
-        externalDataset.setAbbreviation(this.abbreviation);
-        externalDataset.setCreated(this.created != null ? this.created : new Date());
-        externalDataset.setLabel(this.name);
-        externalDataset.setId(this.id);
-        externalDataset.setModified(this.modified);
-        if (this.source != null && this.source.equals("Internal")) this.source = "dmp";
-        if (this.reference != null && !this.reference.trim().isEmpty()
-                && this.source != null && !this.source.trim().isEmpty()) {
-            if (this.source.equals(this.reference.substring(0, this.source.length()))) {
-                externalDataset.setReference(this.reference);
-            } else {
-                externalDataset.setReference(this.source.toLowerCase() + ":" + this.reference);
-            }
-        }
-        if (externalDataset.getReference() == null) {
-            externalDataset.setReference(this.pid);
-        }
-        externalDataset.setModified(new Date());
-        return externalDataset;
-    }
-
-    public String getHint() {
-        return null;
     }
 }

dmp-backend/core/src/main/java/eu/eudat/model/publicapi/datasetwizard/RegistryPublicModel.java

@@ -1,6 +1,10 @@
 package eu.eudat.model.publicapi.datasetwizard;
 
+import eu.eudat.commons.enums.ReferenceType;
 import eu.eudat.data.old.Registry;
+import eu.eudat.model.DescriptionReference;
+import eu.eudat.model.Reference;
+import eu.eudat.model.referencedefinition.Field;
 
 import java.util.Date;
 import java.util.UUID;
@@ -67,43 +71,24 @@ public class RegistryPublicModel {
         this.source = source;
     }
 
-    public RegistryPublicModel fromDataModel(Registry entity) {
-        this.id = entity.getId();
-        this.label = entity.getLabel();
-        this.abbreviation = entity.getAbbreviation();
-        this.reference = entity.getReference();
-        this.uri = entity.getUri();
-        this.definition = entity.getDefinition();
-        String source1 = entity.getReference().substring(0, entity.getReference().indexOf(":"));
-        if (source1.equals("dmp")) {
-            this.source = "Internal";
-        } else {
-            this.source = source1;
-        }
-        return this;
-    }
-
-    public Registry toDataModel() {
-        Registry entity = new Registry();
-        entity.setId(this.id != null ? this.id : UUID.randomUUID());
-        entity.setLabel(this.label);
-        entity.setAbbreviation(this.abbreviation);
-        if (this.source != null && this.source.equals("Internal")) this.source = "dmp";
-        if (this.reference != null && !this.reference.trim().isEmpty()
-                && this.source != null && !this.source.trim().isEmpty()) {
-            if (this.source.equals(this.reference.substring(0, this.source.length()))) {
-                entity.setReference(this.reference);
-            } else {
-                entity.setReference(this.source.toLowerCase() + ":" + this.reference);
-            }
-        }
-        entity.setUri(this.uri);
-        entity.setModified(new Date());
-        entity.setStatus((short)0);
-        return entity;
-    }
-
     public String getHint() {
         return null;
     }
+
+    public static RegistryPublicModel fromDescriptionReference(DescriptionReference descriptionReference) {
+        if (descriptionReference.getReference().getType() != ReferenceType.Registries)
+            return null;
+        RegistryPublicModel model = new RegistryPublicModel();
+        Reference reference = descriptionReference.getReference();
+        model.setId(reference.getId());
+        model.setLabel(reference.getLabel());
+        model.setAbbreviation(reference.getAbbreviation());
+        model.setReference(reference.getReference());
+        model.setSource(reference.getSource());
+        model.setDefinition(reference.getDefinition().toString());
+        Field uri = reference.getDefinition().getFields().stream().filter(x -> x.getCode().equals("uri")).toList().get(0);
+        if (uri != null) model.setUri(uri.getValue());
+
+        return model;
+    }
 }

dmp-backend/core/src/main/java/eu/eudat/model/publicapi/datasetwizard/ServicePublicModel.java

@@ -1,6 +1,10 @@
 package eu.eudat.model.publicapi.datasetwizard;
 
+import eu.eudat.commons.enums.ReferenceType;
 import eu.eudat.data.old.Service;
+import eu.eudat.model.DescriptionReference;
+import eu.eudat.model.Reference;
+import eu.eudat.model.referencedefinition.Field;
 
 import java.util.Date;
 import java.util.UUID;
@@ -63,42 +67,6 @@ public class ServicePublicModel {
         this.source = source;
     }
 
-    public ServicePublicModel fromDataModel(Service entity) {
-        this.id = entity.getId();
-        this.label = entity.getLabel();
-        this.abbreviation = entity.getAbbreviation();
-        this.reference = entity.getReference();
-        this.uri = entity.getUri();
-        this.definition = entity.getDefinition();
-        String source1 = entity.getReference().substring(0, entity.getReference().indexOf(":"));
-        if (source1.equals("dmp")) {
-            this.source = "Internal";
-        } else {
-            this.source = source1;
-        }
-        return this;
-    }
-
-    public Service toDataModel() {
-        Service entity = new Service();
-        entity.setId(this.id != null ? this.id : UUID.randomUUID());
-        entity.setLabel(this.label);
-        entity.setAbbreviation(this.abbreviation);
-        if (this.source != null && this.source.equals("Internal")) this.source = "dmp";
-        if (this.reference != null && !this.reference.trim().isEmpty()
-                && this.source != null && !this.source.trim().isEmpty()) {
-            if (this.source.equals(this.reference.substring(0, this.source.length()))) {
-                entity.setReference(this.reference);
-            } else {
-                entity.setReference(this.source.toLowerCase() + ":" + this.reference);
-            }
-        }
-        entity.setUri(this.uri);
-        entity.setModified(new Date());
-        entity.setStatus((short)0);
-        return entity;
-    }
-
     public String generateLabel() {
         return this.label;
     }
@@ -106,4 +74,21 @@ public class ServicePublicModel {
     public String getHint() {
         return null;
     }
+
+    public static ServicePublicModel fromDescriptionReference(DescriptionReference descriptionReference) {
+        if (descriptionReference.getReference().getType() != ReferenceType.Services)
+            return null;
+        ServicePublicModel model = new ServicePublicModel();
+        Reference reference = descriptionReference.getReference();
+        model.setId(reference.getId());
+        model.setLabel(reference.getLabel());
+        model.setAbbreviation(reference.getAbbreviation());
+        model.setReference(reference.getReference());
+        model.setSource(reference.getSource());
+        model.setDefinition(reference.getDefinition().toString());
+        Field uri = reference.getDefinition().getFields().stream().filter(x -> x.getCode().equals("uri")).toList().get(0);
+        if (uri != null) model.setUri(uri.getValue());
+
+        return model;
+    }
 }