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Merge branch 'Development' 

# Conflicts:
#	dmp-backend/web/src/main/resources/RDACommonStandards.txt
This commit is contained in:
Diamantis Tziotzios 2022-02-25 12:19:29 +02:00
parent 7a8375b988 9f88bdae69
commit b04b35d62b
202 changed files with 4787 additions and 1348 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

4
dmp-backend/data/src/main/java/eu/eudat/data/dao/entities/DatasetDaoImpl.java
View File

@ -35,9 +35,9 @@ public class DatasetDaoImpl extends DatabaseAccess<Dataset> implements DatasetDa
if (criteria.getIsPublic() != null && criteria.getIsPublic()) {
query.where((builder, root) -> builder.equal(root.get("dmp").get("isPublic"), true));
query.where((builder, root) -> builder.equal(root.get("status"), Dataset.Status.FINALISED.getValue()));
query.initSubQuery(String.class).where((builder, root) -> builder.equal(root.get("dmp").get("version"),
/*query.initSubQuery(String.class).where((builder, root) -> builder.equal(root.get("dmp").get("version"),
query.<String>subQueryMax((builder1, externalRoot, nestedRoot) -> builder1.equal(externalRoot.get("dmp").get("groupId"), nestedRoot.get("dmp").get("groupId")),
Arrays.asList(new SelectionField(FieldSelectionType.COMPOSITE_FIELD, "dmp:version")), String.class)));
Arrays.asList(new SelectionField(FieldSelectionType.COMPOSITE_FIELD, "dmp:version")), String.class)));*/
}
if (criteria.getLike() != null && !criteria.getLike().isEmpty())
query.where((builder, root) -> builder.or(

2
dmp-backend/data/src/main/java/eu/eudat/data/entities/Credential.java
View File

@ -34,7 +34,7 @@ public class Credential implements DataEntity<Credential, UUID> {
private Integer provider;
@Column(name = "\"Public\"", nullable = false)
private String publicValue;
@Column(name = "\"Email\"", nullable = false)
@Column(name = "\"Email\"")
private String email;
@Column(name = "\"Secret\"", nullable = false)
private String secret;

2
dmp-backend/data/src/main/java/eu/eudat/data/entities/EmailConfirmation.java
View File

@ -31,7 +31,7 @@ public class EmailConfirmation implements DataEntity<EmailConfirmation, UUID> {
@Column(name = "\"userId\"", nullable = false)
private UUID userId;
@Column(name = "\"data\"", nullable = false)
@Column(name = "\"data\"")
private String data;
@Column(name = "\"expiresAt\"", nullable = false)

2
dmp-backend/data/src/main/java/eu/eudat/data/entities/UserInfo.java
View File

@ -26,7 +26,7 @@ public class UserInfo implements DataEntity<UserInfo, UUID> {
private UUID id;
@Column(name = "email", nullable = false)
@Column(name = "email")
private String email = null;
@Column(name = "authorization_level", nullable = false)

8
dmp-backend/elastic/src/main/java/eu/eudat/elastic/entities/Dmp.java
View File

@ -317,8 +317,12 @@ public class Dmp implements ElasticEntity<Dmp> {
if (fields.get(MapKey.GRANTSTATUS.getName()) != null) {
this.grantStatus = Short.valueOf(fields.get(MapKey.GRANTSTATUS.getName()).toString());
}
this.created = Date.from(Instant.parse(fields.get(MapKey.CREATED.getName()).toString()));
this.modified = Date.from(Instant.parse(fields.get(MapKey.MODIFIED.getName()).toString()));
if (fields.containsKey(MapKey.CREATED.getName())) {
this.created = Date.from(Instant.parse(fields.get(MapKey.CREATED.getName()).toString()));
}
if (fields.containsKey(MapKey.MODIFIED.getName())) {
this.modified = Date.from(Instant.parse(fields.get(MapKey.MODIFIED.getName()).toString()));
}
if (fields.get(MapKey.FINALIZEDAT.getName()) != null) {
this.finalizedAt = Date.from(Instant.parse(fields.get(MapKey.FINALIZEDAT.getName()).toString()));
}

9
dmp-backend/pom.xml
View File

@ -41,6 +41,7 @@
<commons-codec.version>1.9</commons-codec.version>
<org.junit.version>4.11</org.junit.version>
<log4j.version>1.2.17</log4j.version>
<log4j2.version>2.15.0</log4j2.version>
<slf4j.version>1.7.12</slf4j.version>
<!--<jetty.version>11.0.5
</jetty.version>--> <!-- Adapt this to a version found on http://repo.maven.apache.org/maven2/org/eclipse/jetty/jetty-maven-plugin/ -->
@ -218,10 +219,10 @@
<version>2.1</version>
</dependency>
<dependency>
<!--<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-jpamodelgen</artifactId>
</dependency>
</dependency>-->
<dependency>
<groupId>org.elasticsearch.client</groupId>
@ -229,11 +230,11 @@
<version>7.6.0</version>
</dependency>
<dependency>
<!--<dependency>
<groupId>org.apache.logging.log4j</groupId>
<artifactId>log4j-to-slf4j</artifactId>
<version>2.8.2</version>
</dependency>
</dependency>-->
<!-- https://mvnrepository.com/artifact/javax.xml.bind/jaxb-api -->
<dependency>

8
dmp-backend/queryable/src/main/java/eu/eudat/queryable/QueryableList.java
View File

@ -4,8 +4,8 @@ import eu.eudat.queryable.jpa.predicates.*;
import eu.eudat.queryable.queryableentity.DataEntity;
import eu.eudat.queryable.types.SelectionField;
import javax.persistence.TypedQuery;
import javax.persistence.criteria.Expression;
import javax.persistence.criteria.Join;
import javax.persistence.criteria.JoinType;
import javax.persistence.criteria.Subquery;
import java.util.List;
import java.util.Map;
@ -69,4 +69,8 @@ public interface QueryableList<T extends DataEntity> {
<U extends Comparable> Subquery<U> subQueryMax(SinglePredicate<T> predicate, List<SelectionField> fields, Class<U> uClass);
<U extends Comparable> Subquery<U> subQueryMax(NestedQuerySinglePredicate<T> predicate, List<SelectionField> fields, Class<U> uClass);
Join getJoin(String field, JoinType type);
}

8
dmp-backend/queryable/src/main/java/eu/eudat/queryable/jpa/hibernatequeryablelist/QueryableHibernateList.java
View File

@ -64,7 +64,7 @@ public class QueryableHibernateList<T extends DataEntity> implements QueryableLi
}
private QueryableList<T> selectFields() {
List<Selection> rootFields = fields.stream().map(field -> this.convertFieldToPath(field)).filter(x -> x != null).collect(Collectors.toList());
List<Selection> rootFields = fields.stream().map(this::convertFieldToPath).filter(Objects::nonNull).collect(Collectors.toList());
this.query.select(this.manager.getCriteriaBuilder().tuple(rootFields.toArray(new Selection[rootFields.size()])));
return this;
}
@ -95,7 +95,7 @@ public class QueryableHibernateList<T extends DataEntity> implements QueryableLi
return join;
}
private Join getJoin(String field, JoinType type) {
public Join getJoin(String field, JoinType type) {
if (this.joinsMap.containsKey(field)) return this.joinsMap.get(field);
Join join = this.root.join(field, type);
this.joinsMap.put(field, join);
@ -135,11 +135,11 @@ public class QueryableHibernateList<T extends DataEntity> implements QueryableLi
}
public <R> List<R> select(SelectPredicate<T, R> predicate) {
return this.toList().stream().map(item -> predicate.applySelection(item)).collect(Collectors.toList());
return this.toList().stream().map(predicate::applySelection).collect(Collectors.toList());
}
public <R> CompletableFuture<List<R>> selectAsync(SelectPredicate<T, R> predicate) {
return this.toListAsync().thenApplyAsync(items -> items.stream().map(item -> predicate.applySelection(item)).collect(Collectors.toList()));
return this.toListAsync().thenApplyAsync(items -> items.stream().map(predicate::applySelection).collect(Collectors.toList()));
}
public QueryableList<T> distinct() {

4
dmp-backend/web/src/main/java/eu/eudat/cache/ResponsesCache.java vendored
View File

@ -32,6 +32,10 @@ public class ResponsesCache {
SimpleCacheManager simpleCacheManager = new SimpleCacheManager();
List<CaffeineCache> caches = new ArrayList<CaffeineCache>();
caches.add(new CaffeineCache("repositories", Caffeine.newBuilder().expireAfterAccess(HOW_MANY, TIME_UNIT).build()));
caches.add(new CaffeineCache("pubrepos", Caffeine.newBuilder().expireAfterAccess(HOW_MANY, TIME_UNIT).build()));
caches.add(new CaffeineCache("journals", Caffeine.newBuilder().expireAfterAccess(HOW_MANY, TIME_UNIT).build()));
caches.add(new CaffeineCache("taxonomies", Caffeine.newBuilder().expireAfterAccess(HOW_MANY, TIME_UNIT).build()));
caches.add(new CaffeineCache("publications", Caffeine.newBuilder().expireAfterAccess(HOW_MANY, TIME_UNIT).build()));
caches.add(new CaffeineCache("grants", Caffeine.newBuilder().expireAfterAccess(HOW_MANY, TIME_UNIT).build()));
caches.add(new CaffeineCache("projects", Caffeine.newBuilder().expireAfterAccess(HOW_MANY, TIME_UNIT).build()));
caches.add(new CaffeineCache("funders", Caffeine.newBuilder().expireAfterAccess(HOW_MANY, TIME_UNIT).build()));

3
dmp-backend/web/src/main/java/eu/eudat/controllers/Admin.java
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@ -73,7 +73,8 @@ public class Admin extends BaseController {
userDatasetProfile.setRole(0);
getApiContext().getOperationsContext().getDatabaseRepository().getUserDatasetProfileDao().createOrUpdate(userDatasetProfile);
datasetProfileManager.storeDatasetProfileUsers(datasetProfile, profile);
metricsManager.increaseValue(MetricNames.DATASET_TEMPLATE, 1, MetricNames.TOTAL);
metricsManager.increaseValue(MetricNames.DATASET_TEMPLATE, 1, MetricsManager.datasetTemplateStatus.get(datasetProfile.getStatus()) );
return ResponseEntity.status(HttpStatus.OK).body(modelDefinition.getId());
}

3
dmp-backend/web/src/main/java/eu/eudat/controllers/DashBoardController.java
View File

@ -1,6 +1,5 @@
package eu.eudat.controllers;
import eu.eudat.criteria.RecentActivityCriteria;
import eu.eudat.logic.managers.DashBoardManager;
import eu.eudat.logic.security.claims.ClaimedAuthorities;
import eu.eudat.logic.services.ApiContext;
@ -49,7 +48,7 @@ public class DashBoardController extends BaseController {
@RequestMapping(method = RequestMethod.POST, value = {"/dashboard/recentActivity"}, produces = "application/json")
@Transactional
public ResponseEntity<ResponseItem<List<RecentActivityModel>>> getNewRecentActivity(@RequestBody RecentActivityTableRequest tableRequest,
@ClaimedAuthorities(claims = {Authorities.ADMIN, Authorities.MANAGER, Authorities.USER, Authorities.ANONYMOUS}) Principal principal) {
@ClaimedAuthorities(claims = {Authorities.ADMIN, Authorities.MANAGER, Authorities.USER, Authorities.ANONYMOUS}) Principal principal) throws Exception {
List<RecentActivityModel> statistics = dashBoardManager.getNewRecentActivity(tableRequest, principal);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<List<RecentActivityModel>>().status(ApiMessageCode.NO_MESSAGE).payload(statistics));
}

7
dmp-backend/web/src/main/java/eu/eudat/controllers/Datasets.java
View File

@ -15,6 +15,7 @@ import eu.eudat.logic.proxy.config.configloaders.ConfigLoader;
import eu.eudat.logic.security.claims.ClaimedAuthorities;
import eu.eudat.logic.services.ApiContext;
import eu.eudat.logic.services.forms.VisibilityRuleService;
import eu.eudat.logic.services.forms.VisibilityRuleServiceImpl;
import eu.eudat.logic.utilities.documents.helpers.FileEnvelope;
import eu.eudat.logic.utilities.documents.pdf.PDFUtils;
import eu.eudat.models.data.dataset.DatasetOverviewModel;
@ -126,11 +127,11 @@ public class Datasets extends BaseController {
public @ResponseBody
ResponseEntity getSingle(@PathVariable String id, @RequestHeader("Content-Type") String contentType, @ClaimedAuthorities(claims = {Authorities.ADMIN, Authorities.MANAGER, Authorities.USER, Authorities.ANONYMOUS}) Principal principal) throws IllegalAccessException, IOException, InstantiationException {
try {
VisibilityRuleService visibilityRuleService = new VisibilityRuleServiceImpl();
if (contentType.equals("application/xml")) {
VisibilityRuleService visibilityRuleService = this.getApiContext().getUtilitiesService().getVisibilityRuleService();
return this.datasetManager.getDocument(id, visibilityRuleService, contentType, principal);
} else if (contentType.equals("application/msword")) {
FileEnvelope file = datasetManager.getWordDocumentFile(this.configLoader, id, this.getApiContext().getUtilitiesService().getVisibilityRuleService(), principal);
FileEnvelope file = datasetManager.getWordDocumentFile(this.configLoader, id, visibilityRuleService, principal);
InputStream resource = new FileInputStream(file.getFile());
HttpHeaders responseHeaders = new HttpHeaders();
responseHeaders.setContentLength(file.getFile().length());
@ -218,7 +219,7 @@ public class Datasets extends BaseController {
@RequestMapping(method = RequestMethod.GET, value = {"/getPDF/{id}"})
public @ResponseBody
ResponseEntity<byte[]> getPDFDocument(@PathVariable String id, @ClaimedAuthorities(claims = {Authorities.ADMIN, Authorities.MANAGER, Authorities.USER, Authorities.ANONYMOUS}) Principal principal) throws IllegalAccessException, IOException, InstantiationException, InterruptedException {
FileEnvelope file = datasetManager.getWordDocumentFile(this.configLoader, id, this.getApiContext().getUtilitiesService().getVisibilityRuleService(), principal);
FileEnvelope file = datasetManager.getWordDocumentFile(this.configLoader, id, new VisibilityRuleServiceImpl(), principal);
String fileName = file.getFilename().replace(" ", "_").replace(",", "_");
if (fileName.endsWith(".docx")){
fileName = fileName.substring(0, fileName.length() - 5);

45
dmp-backend/web/src/main/java/eu/eudat/controllers/JournalsController.java Normal file
View File

@ -0,0 +1,45 @@
package eu.eudat.controllers;
import eu.eudat.data.entities.DataRepository;
import eu.eudat.logic.managers.DataRepositoryManager;
import eu.eudat.logic.proxy.config.exceptions.HugeResultSet;
import eu.eudat.logic.proxy.config.exceptions.NoURLFound;
import eu.eudat.logic.services.ApiContext;
import eu.eudat.models.data.datarepository.DataRepositoryModel;
import eu.eudat.models.data.helpers.responses.ResponseItem;
import eu.eudat.models.data.security.Principal;
import eu.eudat.types.ApiMessageCode;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.http.HttpStatus;
import org.springframework.http.ResponseEntity;
import org.springframework.transaction.annotation.Transactional;
import org.springframework.web.bind.annotation.*;
import java.util.List;
@RestController
@CrossOrigin
@RequestMapping(value = {"/api/external/journals"})
public class JournalsController extends BaseController {
private DataRepositoryManager dataRepositoryManager;
@Autowired
public JournalsController(ApiContext apiContext, DataRepositoryManager dataRepositoryManager) {
super(apiContext);
this.dataRepositoryManager = dataRepositoryManager;
}
@RequestMapping(method = RequestMethod.GET, produces = "application/json")
public @ResponseBody
ResponseEntity<ResponseItem<List<DataRepositoryModel>>> listExternalDataRepositories(
@RequestParam(value = "query", required = false) String query, @RequestParam(value = "type", required = false) String type, Principal principal
) throws HugeResultSet, NoURLFound {
List<DataRepositoryModel> dataRepositoryModels = this.dataRepositoryManager.getJournals(query, type, principal);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<List<DataRepositoryModel>>().status(ApiMessageCode.NO_MESSAGE).payload(dataRepositoryModels));
}
}

39
dmp-backend/web/src/main/java/eu/eudat/controllers/Prefillings.java Normal file
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@ -0,0 +1,39 @@
package eu.eudat.controllers;
import eu.eudat.logic.managers.PrefillingManager;
import eu.eudat.models.data.datasetwizard.DatasetWizardModel;
import eu.eudat.models.data.helpers.responses.ResponseItem;
import eu.eudat.models.data.prefilling.Prefilling;
import eu.eudat.types.ApiMessageCode;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.http.HttpStatus;
import org.springframework.http.ResponseEntity;
import org.springframework.web.bind.annotation.*;
import java.util.List;
import java.util.UUID;
@RestController
@CrossOrigin
@RequestMapping(value = {"/api"})
public class Prefillings {
private final PrefillingManager prefillingManager;
@Autowired
public Prefillings(PrefillingManager prefillingManager) {
this.prefillingManager = prefillingManager;
}
@RequestMapping(method = RequestMethod.GET, value = {"/prefilling/list"}, produces = "application/json")
public ResponseEntity<ResponseItem<List<Prefilling>>> getPrefillingList(@RequestParam String like, @RequestParam String configId) {
List<Prefilling> prefillingList = prefillingManager.getPrefillings(like, configId);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<List<Prefilling>>().payload(prefillingList).status(ApiMessageCode.NO_MESSAGE));
}
@RequestMapping(method = RequestMethod.GET, value = {"/prefilling/generate/{id}"}, produces = "application/json")
public ResponseEntity<ResponseItem<DatasetWizardModel>> getPrefillingDataset(@PathVariable String id, @RequestParam String configId, @RequestParam UUID profileId) throws Exception {
DatasetWizardModel datasetWizardModel = prefillingManager.getPrefilledDataset(id, configId, profileId);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<DatasetWizardModel>().payload(datasetWizardModel).status(ApiMessageCode.NO_MESSAGE));
}
}

43
dmp-backend/web/src/main/java/eu/eudat/controllers/PubRepositoriesController.java Normal file
View File

@ -0,0 +1,43 @@
package eu.eudat.controllers;
import eu.eudat.logic.managers.DataRepositoryManager;
import eu.eudat.logic.proxy.config.exceptions.HugeResultSet;
import eu.eudat.logic.proxy.config.exceptions.NoURLFound;
import eu.eudat.logic.services.ApiContext;
import eu.eudat.models.data.datarepository.DataRepositoryModel;
import eu.eudat.models.data.helpers.responses.ResponseItem;
import eu.eudat.models.data.security.Principal;
import eu.eudat.types.ApiMessageCode;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.http.HttpStatus;
import org.springframework.http.ResponseEntity;
import org.springframework.web.bind.annotation.*;
import java.util.List;
@RestController
@CrossOrigin
@RequestMapping(value = {"/api/external/pubrepos"})
public class PubRepositoriesController extends BaseController {
private DataRepositoryManager dataRepositoryManager;
@Autowired
public PubRepositoriesController(ApiContext apiContext, DataRepositoryManager dataRepositoryManager) {
super(apiContext);
this.dataRepositoryManager = dataRepositoryManager;
}
@RequestMapping(method = RequestMethod.GET, produces = "application/json")
public @ResponseBody
ResponseEntity<ResponseItem<List<DataRepositoryModel>>> listExternalDataRepositories(
@RequestParam(value = "query", required = false) String query, @RequestParam(value = "type", required = false) String type, Principal principal
) throws HugeResultSet, NoURLFound {
List<DataRepositoryModel> dataRepositoryModels = this.dataRepositoryManager.getPubRepositories(query, type, principal);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<List<DataRepositoryModel>>().status(ApiMessageCode.NO_MESSAGE).payload(dataRepositoryModels));
}
}

41
dmp-backend/web/src/main/java/eu/eudat/controllers/PublicationsController.java Normal file
View File

@ -0,0 +1,41 @@
package eu.eudat.controllers;
import eu.eudat.logic.managers.PublicationManager;
import eu.eudat.logic.proxy.config.exceptions.HugeResultSet;
import eu.eudat.logic.proxy.config.exceptions.NoURLFound;
import eu.eudat.logic.services.ApiContext;
import eu.eudat.models.data.helpers.responses.ResponseItem;
import eu.eudat.models.data.publication.PublicationModel;
import eu.eudat.models.data.security.Principal;
import eu.eudat.types.ApiMessageCode;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.http.HttpStatus;
import org.springframework.http.ResponseEntity;
import org.springframework.web.bind.annotation.*;
import java.util.List;
@RestController
@CrossOrigin
@RequestMapping(value = {"/api/external/publications"})
public class PublicationsController extends BaseController {
private PublicationManager publicationManager;
@Autowired
public PublicationsController(ApiContext apiContext, PublicationManager publicationManager) {
super(apiContext);
this.publicationManager = publicationManager;
}
@RequestMapping(method = RequestMethod.GET, produces = "application/json")
public @ResponseBody
ResponseEntity<ResponseItem<List<PublicationModel>>> listExternalPublications(
@RequestParam(value = "query", required = false) String query, @RequestParam(value = "type", required = false) String type, Principal principal
) throws HugeResultSet, NoURLFound {
List<PublicationModel> publicationModels = this.publicationManager.getPublications(query, type);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<List<PublicationModel>>().status(ApiMessageCode.NO_MESSAGE).payload(publicationModels));
}
}

41
dmp-backend/web/src/main/java/eu/eudat/controllers/TaxonomiesController.java Normal file
View File

@ -0,0 +1,41 @@
package eu.eudat.controllers;
import eu.eudat.logic.managers.TaxonomyManager;
import eu.eudat.logic.proxy.config.exceptions.HugeResultSet;
import eu.eudat.logic.proxy.config.exceptions.NoURLFound;
import eu.eudat.logic.services.ApiContext;
import eu.eudat.models.data.helpers.responses.ResponseItem;
import eu.eudat.models.data.security.Principal;
import eu.eudat.models.data.taxonomy.TaxonomyModel;
import eu.eudat.types.ApiMessageCode;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.http.HttpStatus;
import org.springframework.http.ResponseEntity;
import org.springframework.web.bind.annotation.*;
import java.util.List;
@RestController
@CrossOrigin
@RequestMapping(value = {"/api/external/taxonomies"})
public class TaxonomiesController extends BaseController {
private TaxonomyManager taxonomyManager;
@Autowired
public TaxonomiesController(ApiContext apiContext, TaxonomyManager taxonomyManager) {
super(apiContext);
this.taxonomyManager = taxonomyManager;
}
@RequestMapping(method = RequestMethod.GET, produces = "application/json")
public @ResponseBody
ResponseEntity<ResponseItem<List<TaxonomyModel>>> listExternalPublications(
@RequestParam(value = "query", required = false) String query, @RequestParam(value = "type", required = false) String type, Principal principal
) throws HugeResultSet, NoURLFound {
List<TaxonomyModel> taxonomyModels = this.taxonomyManager.getTaxonomies(query, type);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<List<TaxonomyModel>>().status(ApiMessageCode.NO_MESSAGE).payload(taxonomyModels));
}
}

209
dmp-backend/web/src/main/java/eu/eudat/logic/managers/DashBoardManager.java
View File

@ -8,16 +8,15 @@ import eu.eudat.data.dao.entities.DMPDao;
import eu.eudat.data.dao.entities.DatasetDao;
import eu.eudat.data.dao.entities.GrantDao;
import eu.eudat.data.dao.entities.OrganisationDao;
import eu.eudat.data.entities.*;
import eu.eudat.data.query.PaginationService;
import eu.eudat.data.entities.DMP;
import eu.eudat.data.entities.Dataset;
import eu.eudat.data.entities.Grant;
import eu.eudat.data.entities.UserInfo;
import eu.eudat.data.query.items.table.dataset.DatasetTableRequest;
import eu.eudat.elastic.criteria.SortCriteria;
import eu.eudat.elastic.entities.Dmp;
import eu.eudat.data.query.items.table.dmp.DataManagementPlanTableRequest;
import eu.eudat.logic.builders.model.models.RecentActivityDataBuilder;
import eu.eudat.logic.mapper.elastic.criteria.DmpCriteriaMapper;
import eu.eudat.logic.services.ApiContext;
import eu.eudat.logic.services.operations.DatabaseRepository;
import eu.eudat.models.HintedModelFactory;
import eu.eudat.models.data.dashboard.recent.RecentActivity;
import eu.eudat.models.data.dashboard.recent.RecentActivityData;
import eu.eudat.models.data.dashboard.recent.model.RecentActivityModel;
@ -26,10 +25,10 @@ import eu.eudat.models.data.dashboard.recent.model.RecentDmpModel;
import eu.eudat.models.data.dashboard.recent.tablerequest.RecentActivityTableRequest;
import eu.eudat.models.data.dashboard.searchbar.SearchBarItem;
import eu.eudat.models.data.dashboard.statistics.DashBoardStatistics;
import eu.eudat.models.data.helpers.common.DataTableData;
import eu.eudat.models.data.listingmodels.DataManagementPlanListingModel;
import eu.eudat.models.data.listingmodels.DatasetListingModel;
import eu.eudat.models.data.security.Principal;
import eu.eudat.queryable.QueryableList;
import eu.eudat.types.searchbar.SearchBarItemType;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
@ -42,7 +41,6 @@ import java.lang.reflect.InvocationTargetException;
import java.util.*;
import java.util.concurrent.CompletableFuture;
import java.util.stream.Collectors;
import java.util.stream.IntStream;
import java.util.stream.Stream;
@Component
@ -60,11 +58,15 @@ public class DashBoardManager {
private ApiContext apiContext;
private DatabaseRepository databaseRepository;
private final DataManagementPlanManager dataManagementPlanManager;
private final DatasetManager datasetManager;
@Autowired
public DashBoardManager(ApiContext apiContext) {
public DashBoardManager(ApiContext apiContext, DataManagementPlanManager dataManagementPlanManager, DatasetManager datasetManager) {
this.apiContext = apiContext;
this.databaseRepository = apiContext.getOperationsContext().getDatabaseRepository();
this.dataManagementPlanManager = dataManagementPlanManager;
this.datasetManager = datasetManager;
}
public DashBoardStatistics getStatistics() {
@ -210,11 +212,9 @@ public class DashBoardManager {
}
@Transactional
public List<RecentActivityModel> getNewRecentActivity(RecentActivityTableRequest tableRequest, Principal principal) {
public List<RecentActivityModel> getNewRecentActivity(RecentActivityTableRequest tableRequest, Principal principal) throws Exception {
boolean isAuthenticated = principal.getId() != null;
List<RecentActivityModel> recentActivityModels = new ArrayList<>();
DMPDao dataManagementPlanRepository = databaseRepository.getDmpDao();
DatasetDao datasetRepository = databaseRepository.getDatasetDao();
List<RecentActivityModel> recentActivityModels = new ArrayList<>();
UserInfo user = new UserInfo();
if (isAuthenticated) {
user.setId(principal.getId());
@ -229,117 +229,24 @@ public class DashBoardManager {
dataManagementPlanCriteria.setIsPublic(!isAuthenticated);
dataManagementPlanCriteria.setOnlyPublic(!isAuthenticated);
QueryableList<DMP> dmpList;
QueryableList<Dataset> datasetList;
List<eu.eudat.elastic.entities.Dataset> datasets = null;
List<eu.eudat.elastic.entities.Dmp> dmps = null;
if (apiContext.getOperationsContext().getElasticRepository().getDatasetRepository() != null) {
try {
eu.eudat.elastic.criteria.DatasetCriteria datasetElasticCriteria = new eu.eudat.elastic.criteria.DatasetCriteria();
datasetElasticCriteria.setLike(tableRequest.getCriteria().getLike());
datasetElasticCriteria.setAllowAllVersions(false);
datasetElasticCriteria.setPublic(!isAuthenticated);
datasetElasticCriteria.setOffset(tableRequest.getDatasetOffset());
datasetElasticCriteria.setSize(tableRequest.getLength());
if (isAuthenticated) {
datasetElasticCriteria.setCollaborators(Collections.singletonList(principal.getId()));
}
datasetElasticCriteria.setSortCriteria(DmpCriteriaMapper.toElasticSorting(tableRequest.getOrderings()));
datasetElasticCriteria.getSortCriteria().stream().filter(sortCriteria -> sortCriteria.getFieldName().equals("publishedAt")).forEach(sortCriteria -> {
sortCriteria.setFieldName("dmp:" + sortCriteria.getFieldName());
sortCriteria.setColumnType(SortCriteria.ColumnType.JOIN_COLUMN);
});
datasets = apiContext.getOperationsContext().getElasticRepository().getDatasetRepository().queryIds(datasetElasticCriteria);
}catch (Exception e) {
logger.warn(e.getMessage(), e);
datasets = null;
}
}
if (apiContext.getOperationsContext().getElasticRepository().getDmpRepository() != null) {
try {
eu.eudat.elastic.criteria.DmpCriteria dmpElasticCriteria = new eu.eudat.elastic.criteria.DmpCriteria();
dmpElasticCriteria.setLike(tableRequest.getCriteria().getLike());
dmpElasticCriteria.setAllowAllVersions(false);
dmpElasticCriteria.setPublic(!isAuthenticated);
dmpElasticCriteria.setOffset(tableRequest.getDmpOffset());
dmpElasticCriteria.setSize(tableRequest.getLength());
if (isAuthenticated) {
dmpElasticCriteria.setCollaborators(Collections.singletonList(principal.getId()));
}
dmpElasticCriteria.setSortCriteria(DmpCriteriaMapper.toElasticSorting(tableRequest.getOrderings()));
dmps = apiContext.getOperationsContext().getElasticRepository().getDmpRepository().query(dmpElasticCriteria);
}catch (Exception e) {
logger.warn(e.getMessage(), e);
dmps = null;
}
}
if (dmps != null && !dmps.isEmpty()) {
List<Dmp> finalDmps = dmps;
dmpList = dataManagementPlanRepository.asQueryable().where((builder, root) -> root.get("id").in(finalDmps.stream().map(Dmp::getId).collect(Collectors.toList()))).distinct();
} else {
dmpList = dataManagementPlanRepository.getWithCriteria(dataManagementPlanCriteria).distinct();
PaginationService.applyOrder(dmpList, tableRequest.getOrderings());
dmpList.skip(tableRequest.getDmpOffset()).take(tableRequest.getLength());
}
if (datasets != null && !datasets.isEmpty()) {
List<eu.eudat.elastic.entities.Dataset> finalDatasets = datasets;
datasetList = datasetRepository.asQueryable().where((builder, root) -> root.get("id").in(finalDatasets.stream().map(x -> UUID.fromString(x.getId())).collect(Collectors.toList())));
} else {
datasetList = datasetRepository.getWithCriteria(datasetCriteria);
}
IntStream.range(0, tableRequest.getOrderings().getFields().size()).filter(i -> tableRequest.getOrderings().getFields().get(i).contains("publishedAt"))
.forEach(i -> tableRequest.getOrderings().getFields().set(i, tableRequest.getOrderings().getFields().get(i).toCharArray()[0] + "dmp:publishedAt|join|"));
// tableRequest.getOrderings().getFields().stream().filter(s -> s.contains("publishedAt")).forEach(s -> s = s.toCharArray()[0] + "dmp:publishedAt|join|" );
/*for (int i = 0; i< tableRequest.getOrderings().getFields().size(); i++) {
if (tableRequest.getOrderings().getFields().get(i).contains("publishedAt")) {
String newField = tableRequest.getOrderings().getFields().get(i).toCharArray()[0] + "dmp:publishedAt|join|";
tableRequest.getOrderings().getFields().set(i, newField);
}
}*/
/*if (tableRequest.getOrderings().getFields().get(0).contains("publishedAt")) {
tableRequest.getOrderings().getFields().set(0, tableRequest.getOrderings().getFields().get(0).charAt(0) + "dmp:" + tableRequest.getOrderings().getFields().get(0).substring(1) + "|join|");
}*/
PaginationService.applyOrder(datasetList, tableRequest.getOrderings());
datasetList.skip(tableRequest.getDatasetOffset()).take(tableRequest.getLength());
if (isAuthenticated) {
List<Integer> roles = new LinkedList<>();
roles.add(UserDMP.UserDMPRoles.USER.getValue());
roles.add(UserDMP.UserDMPRoles.OWNER.getValue());
dmpList = dataManagementPlanRepository.getAuthenticated(dmpList, principal.getId(), roles);
datasetList = datasetRepository.getAuthenticated(datasetList, user, roles).distinct();
}
/*CompletableFuture future = CompletableFuture.runAsync(() -> */{
List<DMP> dmps1 = dmpList.withHint(HintedModelFactory.getHint(DataManagementPlanListingModel.class))
.distinct().toList();
recentActivityModels.addAll(dmps1.stream().map(dmp -> {
DatasetCriteria datasetCriteria1 = new DatasetCriteria();
datasetCriteria1.setDmpIds(Collections.singletonList(dmp.getId()));
datasetCriteria1.setAllVersions(false);
if (isAuthenticated) {
dmp.setDataset(retrieveRelevantDatasets(datasetCriteria1, principal.getId()));
} else {
datasetCriteria1.setIsPublic(true);
dmp.setDataset(retrieveRelevantDatasets(datasetCriteria1));
}
return new RecentDmpModel().fromDataModel(dmp);
}).collect(Collectors.toList()));
List<RecentActivityModel> recentDatasetModels = datasetList
.withHint(HintedModelFactory.getHint(DatasetListingModel.class))
.select(item -> new RecentDatasetModel().fromEntity(item));
recentActivityModels.addAll(recentDatasetModels);
}/*);*/
//GK: Use the managers to get the data in order to be better synced with other lists
DataManagementPlanTableRequest dataManagementPlanTableRequest = new DataManagementPlanTableRequest();
dataManagementPlanTableRequest.setCriteria(dataManagementPlanCriteria);
dataManagementPlanTableRequest.setOrderings(tableRequest.getOrderings());
dataManagementPlanTableRequest.setLength(tableRequest.getLength());
dataManagementPlanTableRequest.setOffset(tableRequest.getDmpOffset());
DataTableData<DataManagementPlanListingModel> dmps = this.dataManagementPlanManager.getPaged(dataManagementPlanTableRequest, principal, "listing");
recentActivityModels.addAll(dmps.getData().stream().map(dataManagementPlanListingModel -> new RecentDmpModel().fromDataModel(dataManagementPlanListingModel.toDataModel())).collect(Collectors.toList()));
DatasetTableRequest datasetTableRequest = new DatasetTableRequest();
datasetCriteria.setCollaborators(new ArrayList<>());
datasetTableRequest.setCriteria(datasetCriteria);
datasetTableRequest.setOrderings(tableRequest.getOrderings());
datasetTableRequest.getOrderings().getFields().addAll(datasetTableRequest.getOrderings().getFields().stream().filter(s -> s.contains("publishedAt")).map(s -> s.charAt(0) + "dmp:" + s.substring(1) + "|join|").collect(Collectors.toList()));
datasetTableRequest.getOrderings().getFields().removeIf(s -> s.contains("publishedAt") && !s.endsWith("|join|"));
datasetTableRequest.setLength(tableRequest.getLength());
datasetTableRequest.setOffset(tableRequest.getDatasetOffset());
DataTableData<DatasetListingModel> datasets = this.datasetManager.getPaged(datasetTableRequest, principal);
recentActivityModels.addAll(datasets.getData().stream().map(datasetListingModel -> new RecentDatasetModel().fromDataModel(datasetListingModel.toDataModel())).collect(Collectors.toList()));
//GK: Shuffle the deck otherwise we will summon the DMPodia when sorting with status
/*int pos = -1;
@ -355,25 +262,23 @@ public class DashBoardManager {
}*/
//GK: No one likes to play shuffle with the recent activities. So just re-sort them based on how they have been sorted already
String order = tableRequest.getOrderings().getFields().get(0).toCharArray()[0] + "";
String field = tableRequest.getOrderings().getFields().get(0).substring(1);
if (field.contains(":") && field.contains("|")) {
field = field.substring(field.lastIndexOf(":") + 1, field.indexOf("|"));
}
field = field.equals("label") ? "title" : field;
field = field.substring(0, 1).toUpperCase() + field.substring(1);
String finalField = field;
recentActivityModels = recentActivityModels.stream().sorted((o1, o2) -> {
try {
String order = tableRequest.getOrderings().getFields().get(0).toCharArray()[0] + "";
String field = tableRequest.getOrderings().getFields().get(0).substring(1);
if (field.contains(":") && field.contains("|")) {
field = field.substring(field.lastIndexOf(":") + 1, field.indexOf("|"));
}
field = field.equals("label") ? "title" : field;
field = field.substring(0, 1).toUpperCase() + field.substring(1);
return (order.equals("+") ? 1 : -1 ) * ((Comparable)o1.getClass().getMethod("get" + field).invoke(o1)).compareTo(o2.getClass().getMethod("get" + field).invoke(o2));
return (order.equals("+") ? 1 : -1 ) * ((Comparable)o1.getClass().getMethod("get" + finalField).invoke(o1)).compareTo(o2.getClass().getMethod("get" + finalField).invoke(o2));
} catch (IllegalAccessException | NoSuchMethodException | InvocationTargetException e) {
logger.error(e.getLocalizedMessage(), e);
}
return 0;
}).collect(Collectors.toList());
//CompletableFuture.allOf(future).join();
// CompletableFuture.allOf(dmps, datasets).join();
return recentActivityModels;
}
@ -435,38 +340,4 @@ public class DashBoardManager {
return searchBarItems;
}
private Set<Dataset> retrieveRelevantDatasets(DatasetCriteria datasetCriteria) {
return retrieveRelevantDatasets(datasetCriteria, null);
}
private Set<Dataset> retrieveRelevantDatasets (DatasetCriteria datasetCriteria, UUID principal) {
QueryableList<Dataset> datasetItems = apiContext.getOperationsContext().getDatabaseRepository().getDatasetDao().getWithCriteria(datasetCriteria);
if (principal != null) {
UserInfo userInfo = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().find(principal);
List<Integer> roles = new ArrayList<>();
roles.add(0);
roles.add(1);
datasetItems = apiContext.getOperationsContext().getDatabaseRepository().getDatasetDao().getAuthenticated(datasetItems, userInfo, roles);
}
Long maxDatasets = datasetItems.distinct().count();
DatasetTableRequest datasetTableRequest = new DatasetTableRequest();
datasetTableRequest.setOffset(0);
datasetTableRequest.setLength(3);
Set<Dataset> datasetsSet = new LinkedHashSet<>();
try {
datasetItems = PaginationManager.applyPaging(datasetItems, datasetTableRequest);
List<Dataset> datasets = datasetItems.distinct().toList();
datasetsSet.addAll(datasets);
for (int i = 0; i < maxDatasets - datasets.size(); i++) {
Dataset fakedataset = new Dataset();
fakedataset.setId(UUID.randomUUID());
datasetsSet.add(fakedataset);
}
} catch (Exception e) {
logger.error(e.getMessage(), e);
}
return datasetsSet;
}
}

14
dmp-backend/web/src/main/java/eu/eudat/logic/managers/DataManagementPlanManager.java
View File

@ -1,7 +1,5 @@
package eu.eudat.logic.managers;
import com.fasterxml.jackson.core.JsonParser;
import com.fasterxml.jackson.databind.JsonNode;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.eudat.configurations.dynamicgrant.DynamicGrantConfiguration;
import eu.eudat.configurations.dynamicgrant.entities.Property;
@ -33,6 +31,7 @@ import eu.eudat.logic.mapper.elastic.criteria.DmpCriteriaMapper;
import eu.eudat.logic.proxy.config.configloaders.ConfigLoader;
import eu.eudat.logic.services.ApiContext;
import eu.eudat.logic.services.forms.VisibilityRuleService;
import eu.eudat.logic.services.forms.VisibilityRuleServiceImpl;
import eu.eudat.logic.services.operations.DatabaseRepository;
import eu.eudat.logic.services.utilities.UtilitiesService;
import eu.eudat.logic.utilities.builders.XmlBuilder;
@ -106,7 +105,6 @@ public class DataManagementPlanManager {
private ApiContext apiContext;
private DatasetManager datasetManager;
private UtilitiesService utilitiesService;
private DatabaseRepository databaseRepository;
private Environment environment;
private RDAManager rdaManager;
@ -117,7 +115,6 @@ public class DataManagementPlanManager {
public DataManagementPlanManager(ApiContext apiContext, DatasetManager datasetManager, Environment environment, RDAManager rdaManager, UserManager userManager, MetricsManager metricsManager) {
this.apiContext = apiContext;
this.datasetManager = datasetManager;
this.utilitiesService = apiContext.getUtilitiesService();
this.databaseRepository = apiContext.getOperationsContext().getDatabaseRepository();
this.environment = environment;
this.rdaManager = rdaManager;
@ -185,8 +182,9 @@ public class DataManagementPlanManager {
dataTable.setData(dmps1.stream().map(dmp -> {
DatasetCriteria datasetCriteria = new DatasetCriteria();
datasetCriteria.setDmpIds(Collections.singletonList(dmp.getId()));
datasetCriteria.setAllVersions(false);
datasetCriteria.setAllVersions(dataManagementPlanTableRequest.getCriteria().getAllVersions());
datasetCriteria.setIsPublic(dataManagementPlanTableRequest.getCriteria().getIsPublic());
datasetCriteria.setGroupIds(Collections.singletonList(dmp.getGroupId()));
dmp.setDataset(retrieveRelevantDatasets(datasetCriteria, principalID));
@ -210,6 +208,8 @@ public class DataManagementPlanManager {
DatasetCriteria datasetCriteria = new DatasetCriteria();
datasetCriteria.setDmpIds(Collections.singletonList(dmp.getId()));
datasetCriteria.setIsPublic(true);
datasetCriteria.setAllVersions(dataManagementPlanTableRequest.getCriteria().getAllVersions());
datasetCriteria.setGroupIds(Collections.singletonList(dmp.getGroupId()));
dmp.setDataset(retrieveRelevantDatasets(datasetCriteria));
@ -1172,7 +1172,7 @@ public class DataManagementPlanManager {
public FileEnvelope getWordDocument(String id, Principal principal, ConfigLoader configLoader, Boolean versioned) throws IOException {
WordBuilder wordBuilder = new WordBuilder();
VisibilityRuleService visibilityRuleService = this.utilitiesService.getVisibilityRuleService();
VisibilityRuleService visibilityRuleService = new VisibilityRuleServiceImpl();
DatasetWizardModel dataset = new DatasetWizardModel();
XWPFDocument document = configLoader.getDocument();
@ -1341,7 +1341,7 @@ public class DataManagementPlanManager {
private FileEnvelope getXmlDocument(String id, Principal principal) throws InstantiationException, IllegalAccessException, IOException {
ExportXmlBuilder xmlBuilder = new ExportXmlBuilder();
VisibilityRuleService visibilityRuleService = utilitiesService.getVisibilityRuleService();
VisibilityRuleService visibilityRuleService = new VisibilityRuleServiceImpl();
eu.eudat.data.entities.DMP dmp = databaseRepository.getDmpDao().find(UUID.fromString(id));
if (!dmp.isPublic() && dmp.getUsers().stream().filter(userInfo -> userInfo.getUser().getId() == principal.getId()).collect(Collectors.toList()).size() == 0)
throw new UnauthorisedException();

31
dmp-backend/web/src/main/java/eu/eudat/logic/managers/DataManagementProfileManager.java
View File

@ -164,18 +164,23 @@ public class DataManagementProfileManager {
}
private List<Tuple<String, String>> externalAutocompleteRequest(DmpProfileExternalAutoComplete data, String like) {
List<Tuple<String, String>> result = new LinkedList<>();
RestTemplate restTemplate = new RestTemplate();
HttpHeaders headers = new HttpHeaders();
headers.setAccept(Collections.singletonList(MediaType.valueOf("application/vnd.api+json; charset=utf-8")));
headers.setContentType(MediaType.APPLICATION_JSON);
HttpEntity<String> entity = new HttpEntity<>("parameters", headers);
ResponseEntity<Object> response = restTemplate.exchange(data.getUrl() + "?search=" + like, HttpMethod.GET, entity, Object.class);
DocumentContext jsonContext = JsonPath.parse(response.getBody());
List<Map<String, String>> jsonItems = jsonContext.read(data.getOptionsRoot() + "['" + data.getLabel() + "','" + data.getValue() + "']");
jsonItems.forEach(item -> result.add(new Tuple<>(item.get(data.getValue()), item.get(data.getLabel()))));
return result;
return externalAutocompleteRequest(data.getUrl(), data.getOptionsRoot(), data.getLabel(), data.getValue(), like);
}
public static List<Tuple<String, String>> externalAutocompleteRequest(String url, String optionsRoot, String label, String value, String like) {
List<Tuple<String, String>> result = new LinkedList<>();
RestTemplate restTemplate = new RestTemplate();
HttpHeaders headers = new HttpHeaders();
headers.setAccept(Collections.singletonList(MediaType.valueOf("application/vnd.api+json; charset=utf-8")));
headers.setContentType(MediaType.APPLICATION_JSON);
HttpEntity<String> entity = new HttpEntity<>("parameters", headers);
ResponseEntity<Object> response = restTemplate.exchange(url + "?search=" + like, HttpMethod.GET, entity, Object.class);
DocumentContext jsonContext = JsonPath.parse(response.getBody());
List<Map<String, String>> jsonItems = jsonContext.read(optionsRoot + "['" + label + "','" + value + "']");
jsonItems.forEach(item -> result.add(new Tuple<>(item.get(value), item.get(label))));
return result;
}
}

38
dmp-backend/web/src/main/java/eu/eudat/logic/managers/DataRepositoryManager.java
View File

@ -53,6 +53,44 @@ public class DataRepositoryManager {
ObjectMapper mapper = new ObjectMapper().configure(DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES, false);
dataRepositoryModels.addAll(remoteRepos.stream().map(item -> mapper.convertValue(item, DataRepositoryModel.class)).collect(Collectors.toList()));
return dataRepositoryModels;
}
public List<DataRepositoryModel> getPubRepositories(String query, String type, Principal principal) throws HugeResultSet, NoURLFound {
ExternalUrlCriteria externalUrlCriteria = new ExternalUrlCriteria(query);
List<Map<String, String>> remoteRepos = this.apiContext.getOperationsContext().getRemoteFetcher().getPubRepositories(externalUrlCriteria, type);
DataRepositoryCriteria criteria = new DataRepositoryCriteria();
if (!query.isEmpty()) criteria.setLike(query);
criteria.setCreationUserId(principal.getId());
List<DataRepositoryModel> dataRepositoryModels = new LinkedList<>();
if (type.equals("")) {
List<DataRepository> dataRepositoryList = (this.apiContext.getOperationsContext().getDatabaseRepository().getDataRepositoryDao().getWithCriteria(criteria)).toList();
dataRepositoryModels = dataRepositoryList.stream().map(item -> new DataRepositoryModel().fromDataModel(item)).collect(Collectors.toList());
}
ObjectMapper mapper = new ObjectMapper().configure(DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES, false);
dataRepositoryModels.addAll(remoteRepos.stream().map(item -> mapper.convertValue(item, DataRepositoryModel.class)).collect(Collectors.toList()));
return dataRepositoryModels;
}
public List<DataRepositoryModel> getJournals(String query, String type, Principal principal) throws HugeResultSet, NoURLFound {
ExternalUrlCriteria externalUrlCriteria = new ExternalUrlCriteria(query);
List<Map<String, String>> remoteRepos = this.apiContext.getOperationsContext().getRemoteFetcher().getJournals(externalUrlCriteria, type);
DataRepositoryCriteria criteria = new DataRepositoryCriteria();
if (!query.isEmpty()) criteria.setLike(query);
criteria.setCreationUserId(principal.getId());
List<DataRepositoryModel> dataRepositoryModels = new LinkedList<>();
if (type.equals("")) {
List<DataRepository> dataRepositoryList = (this.apiContext.getOperationsContext().getDatabaseRepository().getDataRepositoryDao().getWithCriteria(criteria)).toList();
dataRepositoryModels = dataRepositoryList.stream().map(item -> new DataRepositoryModel().fromDataModel(item)).collect(Collectors.toList());
}
ObjectMapper mapper = new ObjectMapper().configure(DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES, false);
dataRepositoryModels.addAll(remoteRepos.stream().map(item -> mapper.convertValue(item, DataRepositoryModel.class)).collect(Collectors.toList()));
return dataRepositoryModels;
}
}

41
dmp-backend/web/src/main/java/eu/eudat/logic/managers/DatasetManager.java
View File

@ -26,6 +26,7 @@ import eu.eudat.logic.mapper.elastic.criteria.DmpCriteriaMapper;
import eu.eudat.logic.proxy.config.configloaders.ConfigLoader;
import eu.eudat.logic.services.ApiContext;
import eu.eudat.logic.services.forms.VisibilityRuleService;
import eu.eudat.logic.services.forms.VisibilityRuleServiceImpl;
import eu.eudat.logic.services.operations.DatabaseRepository;
import eu.eudat.logic.utilities.documents.helpers.FileEnvelope;
import eu.eudat.logic.utilities.documents.types.ParagraphStyle;
@ -49,7 +50,6 @@ import eu.eudat.models.data.user.composite.PagedDatasetProfile;
import eu.eudat.queryable.QueryableList;
import eu.eudat.types.Authorities;
import eu.eudat.types.MetricNames;
import org.apache.commons.io.IOUtils;
import org.apache.poi.xwpf.extractor.XWPFWordExtractor;
import org.apache.poi.xwpf.usermodel.XWPFDocument;
import org.apache.poi.xwpf.usermodel.XWPFParagraph;
@ -60,11 +60,11 @@ import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.core.env.Environment;
import org.springframework.core.io.FileSystemResource;
import org.springframework.http.*;
import org.springframework.http.HttpHeaders;
import org.springframework.http.HttpStatus;
import org.springframework.http.MediaType;
import org.springframework.http.ResponseEntity;
import org.springframework.stereotype.Component;
import org.springframework.util.LinkedMultiValueMap;
import org.springframework.web.client.RestTemplate;
import org.springframework.web.multipart.MultipartFile;
import org.w3c.dom.Document;
import org.w3c.dom.Element;
@ -91,8 +91,6 @@ import java.time.temporal.ChronoUnit;
import java.util.*;
import java.util.stream.Collectors;
import java.util.stream.Stream;
import java.util.zip.ZipEntry;
import java.util.zip.ZipInputStream;
@Component
public class DatasetManager {
@ -415,6 +413,8 @@ public class DatasetManager {
runDatasetTemplate.setBold(true);
runDatasetTemplate.setFontSize(12);
wordBuilder.addParagraphContent(datasetEntity.getDescription(), document, ParagraphStyle.HTML, BigInteger.ZERO);
/*XWPFParagraph externalReferencesParagraph = document.createParagraph();
externalReferencesParagraph.setStyle("Heading2");
XWPFRun externalReferencesRun = externalReferencesParagraph.createRun();
@ -527,7 +527,7 @@ public class DatasetManager {
public String getWordDocumentText (Dataset datasetEntity) throws Exception {
DatasetWizardModel datasetWizardModel = new DatasetWizardModel().fromDataModel(datasetEntity);
datasetWizardModel.setDatasetProfileDefinition(this.getPagedProfile(datasetWizardModel, datasetEntity));
XWPFDocument document = getLightWordDocument(this.configLoader, datasetWizardModel, this.apiContext.getUtilitiesService().getVisibilityRuleService());
XWPFDocument document = getLightWordDocument(this.configLoader, datasetWizardModel, new VisibilityRuleServiceImpl());
XWPFWordExtractor extractor = new XWPFWordExtractor(document);
return extractor.getText();/*.replaceAll("\n\\s*", " ");*/
}
@ -657,7 +657,7 @@ public class DatasetManager {
JSONObject obj = new JSONObject(dataset.getProperties());
VisibilityRuleService visibilityRuleService = this.apiContext.getUtilitiesService().getVisibilityRuleService();
VisibilityRuleService visibilityRuleService = new VisibilityRuleServiceImpl();
visibilityRuleService.setProperties(obj.toMap());
dataset.setProfile(profile);
@ -666,12 +666,16 @@ public class DatasetManager {
for (String validator : datasetProfileValidators) {
if ((obj.has(validator) && (obj.getString(validator) == null || obj.getString(validator).trim().isEmpty())) && isElementVisible(nodeList, validator, visibilityRuleService)) {
if (obj.has(validator) && isNullOrEmpty(obj.getString(validator)) && isElementVisible(nodeList, validator, visibilityRuleService)) {
throw new Exception("Field value of " + validator + " must be filled.");
}
}
}
private boolean isNullOrEmpty(String value) {
return value == null || value.trim().isEmpty();
}
private boolean isElementVisible(NodeList nodeList, String id, VisibilityRuleService visibilityRuleService) {
Element fieldSet = null;
for (int i = 0; i < nodeList.getLength(); i++) {
@ -1048,20 +1052,19 @@ public class DatasetManager {
Set<JsonNode> tagNodes = new HashSet<>();
tagNodes.addAll(JsonSearcher.findNodes(propertiesJson, "renderStyle", "tags", true));
tagNodes.addAll(JsonSearcher.findNodes(propertiesJson, "rdaProperty", "dataset.keyword"));
if(wizardModel.getTags() == null){
wizardModel.setTags(new ArrayList<>());
}
if (!tagNodes.isEmpty()) {
tagNodes.forEach(node -> {
JsonNode value = node.get("value");
if (!value.toString().equals("\"\"")) {
if (!value.toString().equals("\"\"") && !value.toString().equals("null")) {
String stringValue = value.toString().replaceAll("=", ":");
JSONArray values = new JSONArray(stringValue);
if (values != null) {
values.iterator().forEachRemaining(element -> {
Map<String, Object> data = ((JSONObject) element).toMap();
this.addTag(tags, wizardModel.getTags(), data.get("id").toString(), data.get("name").toString());
});
} else {
this.addTag(tags, wizardModel.getTags(), "", value.asText());
}
values.iterator().forEachRemaining(element -> {
Map<String, Object> data = ((JSONObject) element).toMap();
this.addTag(tags, wizardModel.getTags(), data.get("id").toString(), data.get("name").toString());
});
}
});
}

21
dmp-backend/web/src/main/java/eu/eudat/logic/managers/DatasetProfileManager.java
View File

@ -57,11 +57,12 @@ import java.util.stream.Collectors;
@Component
public class DatasetProfileManager {
private static final Logger logger = LoggerFactory.getLogger(DatasetProfileManager.class);
private static final List<String> cache = new ArrayList<>();
private ApiContext apiContext;
private DatabaseRepository databaseRepository;
private Environment environment;
private List<String> cache;
private final MetricsManager metricsManager;
@Autowired
@ -70,7 +71,6 @@ public class DatasetProfileManager {
this.databaseRepository = apiContext.getOperationsContext().getDatabaseRepository();
this.environment = environment;
this.metricsManager = metricsManager;
this.cache = new ArrayList<>();
}
@Transactional
@ -97,7 +97,6 @@ public class DatasetProfileManager {
DatasetProfile profile = apiContext.getOperationsContext().getDatabaseRepository().getDatasetProfileDao().find(UUID.fromString(id));
apiContext.getOperationsContext().getDatabaseRepository().detachEntity(profile);
profile.setId(null);
metricsManager.increaseValue(MetricNames.DATASET_TEMPLATE, 1, MetricNames.TOTAL);
return profile;
}
@ -134,7 +133,7 @@ public class DatasetProfileManager {
return field;
}
public List<ExternalAutocompleteFieldModel> getAutocomplete(AutoCompleteData data, String like) {
public static List<ExternalAutocompleteFieldModel> getAutocomplete(AutoCompleteData data, String like) {
List<ExternalAutocompleteFieldModel> result = new LinkedList<>();
SimpleClientHttpRequestFactory simpleFactory = new SimpleClientHttpRequestFactory();
@ -183,9 +182,9 @@ public class DatasetProfileManager {
headers.setContentType(MediaType.TEXT_PLAIN);
entity = new HttpEntity<>("parameters", headers);
if (this.cache.size() <= i) {
if (cache.size() <= i) {
response = restTemplate.exchange(singleData.getUrl(), HttpMethod.GET, entity, String.class);
this.cache.add((String) response.getBody());
cache.add((String) response.getBody());
}
jsonContext = JsonPath.parse(cache.get(i));
jsonItems = jsonContext.read(singleData.getOptionsRoot() + "['" + singleData.getAutoCompleteOptions().getLabel() + "','" + singleData.getAutoCompleteOptions().getValue() + "','" + singleData.getAutoCompleteOptions().getSource() + "','" + "uri" + "']");
@ -202,7 +201,7 @@ public class DatasetProfileManager {
//return result;
}
private String parseItem(Object item) {
private static String parseItem(Object item) {
if (item instanceof String) {
return (String) item;
}
@ -211,9 +210,9 @@ public class DatasetProfileManager {
return parseItem(listedItems.get(0));
}
if (item instanceof Map) {
return (String) ((Map)item).get("$");
return String.valueOf(((Map)item).get("$"));
}
return item.toString();
return item != null ? item.toString() : null;
}
public ResponseEntity<byte[]> getDocument(eu.eudat.models.data.user.composite.DatasetProfile datasetProfile, String label) throws IllegalAccessException, IOException, InstantiationException {
@ -253,7 +252,7 @@ public class DatasetProfileManager {
File localFile = convert(multiPartFile);
eu.eudat.logic.utilities.documents.xml.datasetProfileXml.datasetProfileModel.DatasetProfile profile = xmlBuilder.build(localFile);
Files.deleteIfExists(localFile.toPath());
metricsManager.increaseValue(MetricNames.DATASET_TEMPLATE, 1, MetricNames.TOTAL);
metricsManager.increaseValue(MetricNames.DATASET_TEMPLATE, 1, MetricNames.DRAFT);
return profile;
} catch (IOException e) {
logger.error(e.getMessage(), e);
@ -291,6 +290,8 @@ public class DatasetProfileManager {
modelDefinition.setGroupId(oldDatasetProfile.getGroupId());
modelDefinition.setLanguage(oldDatasetProfile.getLanguage());
apiContext.getOperationsContext().getDatabaseRepository().getDatasetProfileDao().createOrUpdate(modelDefinition);
eu.eudat.data.entities.DatasetProfile datasetProfile = apiContext.getOperationsContext().getDatabaseRepository().getDatasetProfileDao().createOrUpdate(modelDefinition);
this.storeDatasetProfileUsers(datasetProfile, profile);
return modelDefinition;
} else {
throw new DatasetProfileNewVersionException("Version to update not the latest.");

26
dmp-backend/web/src/main/java/eu/eudat/logic/managers/MetricsManager.java
View File

@ -3,7 +3,6 @@ package eu.eudat.logic.managers;
import eu.eudat.data.dao.criteria.*;
import eu.eudat.data.entities.DatasetProfile;
import eu.eudat.logic.services.ApiContext;
import eu.eudat.logic.utilities.helpers.StreamDistinctBy;
import eu.eudat.types.MetricNames;
import io.micrometer.prometheus.PrometheusMeterRegistry;
import io.prometheus.client.Gauge;
@ -23,7 +22,10 @@ import java.text.ParseException;
import java.text.SimpleDateFormat;
import java.time.LocalDate;
import java.time.ZoneId;
import java.util.*;
import java.util.Collections;
import java.util.Date;
import java.util.List;
import java.util.Map;
import java.util.stream.Collectors;
import java.util.stream.Stream;
@ -32,6 +34,11 @@ public class MetricsManager {
private final static Logger logger = LoggerFactory.getLogger(MetricsManager.class);
private final Map<String, Gauge> gauges;
public static final Map<Short, String> datasetTemplateStatus = Stream.of(new Object[][] {
{ DatasetProfile.Status.SAVED.getValue(), MetricNames.DRAFT },
{ DatasetProfile.Status.FINALIZED.getValue(), MetricNames.ACTIVE },
}).collect(Collectors.toMap(data -> (Short) data[0], data -> (String) data[1]));
public void increaseValue(String name, int amount, String label) {
if(label != null) {
@ -397,17 +404,10 @@ public class MetricsManager {
criteria.setStatus(1);
criteria.setAllVersions(false);
if (countNexus) criteria.setPeriodStart(getNexusDate());
List<DatasetProfile> datasetProfiles = apiContext.getOperationsContext().getDatabaseRepository().getDatasetProfileDao().getWithCriteria(criteria).toList();
List<DatasetProfile> filteredProfiles = new ArrayList<>();
for (DatasetProfile datasetProfile : datasetProfiles) {
DatasetCriteria datasetCriteria = new DatasetCriteria();
datasetCriteria.setDatasetTemplates(Collections.singletonList(datasetProfile.getId()));
Long datasetCount = apiContext.getOperationsContext().getDatabaseRepository().getDatasetDao().getWithCriteria(datasetCriteria).count();
if (datasetCount > 0) {
filteredProfiles.add(datasetProfile);
}
}
return filteredProfiles.stream().filter(StreamDistinctBy.distinctByKey(DatasetProfile::getId)).count();
List<DatasetProfile> datasetProfiles = apiContext.getOperationsContext().getDatabaseRepository().getDatasetProfileDao().getWithCriteria(criteria).withFields(Collections.singletonList("id")).toList();
DatasetCriteria datasetCriteria = new DatasetCriteria();
datasetCriteria.setDatasetTemplates(datasetProfiles.stream().map(DatasetProfile::getId).collect(Collectors.toList()));
return apiContext.getOperationsContext().getDatabaseRepository().getDatasetDao().getWithCriteria(datasetCriteria).select(root -> root.getProfile().getId()).stream().distinct().count();
}
}

65
dmp-backend/web/src/main/java/eu/eudat/logic/managers/PrefillingManager.java Normal file
View File

@ -0,0 +1,65 @@
package eu.eudat.logic.managers;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.eudat.data.entities.DatasetProfile;
import eu.eudat.logic.mapper.prefilling.PrefillingMapper;
import eu.eudat.logic.proxy.config.ExternalUrlCriteria;
import eu.eudat.logic.proxy.config.configloaders.ConfigLoader;
import eu.eudat.logic.proxy.config.entities.PrefillingConfig;
import eu.eudat.logic.proxy.config.entities.PrefillingGet;
import eu.eudat.logic.services.ApiContext;
import eu.eudat.models.data.datasetwizard.DatasetWizardModel;
import eu.eudat.models.data.prefilling.Prefilling;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.http.HttpEntity;
import org.springframework.http.HttpHeaders;
import org.springframework.http.HttpMethod;
import org.springframework.http.MediaType;
import org.springframework.stereotype.Service;
import org.springframework.web.client.RestTemplate;
import java.util.*;
import java.util.stream.Collectors;
@Service
public class PrefillingManager {
private final ApiContext apiContext;
private final ConfigLoader configLoader;
private final ObjectMapper objectMapper;
private final DatasetManager datasetManager;
@Autowired
public PrefillingManager(ApiContext apiContext, ConfigLoader configLoader, DatasetManager datasetManager) {
this.apiContext = apiContext;
this.configLoader = configLoader;
this.objectMapper = new ObjectMapper();
this.datasetManager = datasetManager;
}
public List<Prefilling> getPrefillings(String like, String configId) {
PrefillingConfig prefillingConfig = configLoader.getExternalUrls().getPrefillings().get(configId);
ExternalUrlCriteria externalUrlCriteria = new ExternalUrlCriteria();
externalUrlCriteria.setLike(like);
List<Map<String, String>> map = apiContext.getOperationsContext().getRemoteFetcher().getExternalGeneric(externalUrlCriteria, prefillingConfig.getPrefillingSearch());
return map.stream().map(submap -> objectMapper.convertValue(submap, Prefilling.class)).collect(Collectors.toList());
}
public DatasetWizardModel getPrefilledDataset(String prefillId, String configId, UUID profileId) throws Exception {
PrefillingConfig prefillingConfig = configLoader.getExternalUrls().getPrefillings().get(configId);
PrefillingGet prefillingGet = prefillingConfig.getPrefillingGet();
Map<String, Object> prefillingEntity = getSingle(prefillingGet.getUrl(), prefillId);
DatasetProfile datasetProfile = apiContext.getOperationsContext().getDatabaseRepository().getDatasetProfileDao().find(profileId);
return PrefillingMapper.mapPrefilledEntityToDatasetWizard(prefillingEntity, prefillingGet, prefillingConfig.getType(), datasetProfile, datasetManager);
}
private Map<String, Object> getSingle(String url, String id) {
RestTemplate restTemplate = new RestTemplate();
String parsedUrl = url.replace("{id}", id);
HttpHeaders headers = new HttpHeaders();
headers.setAccept(Collections.singletonList(MediaType.APPLICATION_JSON));
HttpEntity<String> entity = new HttpEntity("", headers);
return restTemplate.exchange(parsedUrl, HttpMethod.GET, entity, LinkedHashMap.class).getBody();
}
}

42
dmp-backend/web/src/main/java/eu/eudat/logic/managers/PublicationManager.java Normal file
View File

@ -0,0 +1,42 @@
package eu.eudat.logic.managers;
import com.fasterxml.jackson.databind.DeserializationFeature;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.eudat.data.dao.criteria.DataRepositoryCriteria;
import eu.eudat.logic.proxy.config.ExternalUrlCriteria;
import eu.eudat.logic.proxy.config.exceptions.HugeResultSet;
import eu.eudat.logic.proxy.config.exceptions.NoURLFound;
import eu.eudat.logic.services.ApiContext;
import eu.eudat.models.data.publication.PublicationModel;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.stereotype.Component;
import java.util.LinkedList;
import java.util.List;
import java.util.Map;
import java.util.stream.Collectors;
@Component
public class PublicationManager {
private ApiContext apiContext;
@Autowired
public PublicationManager(ApiContext apiContext) {
this.apiContext = apiContext;
}
public List<PublicationModel> getPublications(String query, String type) throws HugeResultSet, NoURLFound {
ExternalUrlCriteria externalUrlCriteria = new ExternalUrlCriteria(query);
List<Map<String, String>> remoteRepos = this.apiContext.getOperationsContext().getRemoteFetcher().getPublications(externalUrlCriteria, type);
DataRepositoryCriteria criteria = new DataRepositoryCriteria();
if (!query.isEmpty()) criteria.setLike(query);
List<PublicationModel> publicationModels = new LinkedList<>();
ObjectMapper mapper = new ObjectMapper().configure(DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES, false);
publicationModels.addAll(remoteRepos.stream().map(item -> mapper.convertValue(item, PublicationModel.class)).collect(Collectors.toList()));
// publicationModels = publicationModels.stream().filter(publicationModel -> publicationModel.getName().toLowerCase().contains(query.toLowerCase())).collect(Collectors.toList());
return publicationModels;
}
}

43
dmp-backend/web/src/main/java/eu/eudat/logic/managers/TaxonomyManager.java Normal file
View File

@ -0,0 +1,43 @@
package eu.eudat.logic.managers;
import com.fasterxml.jackson.databind.DeserializationFeature;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.eudat.data.dao.criteria.DataRepositoryCriteria;
import eu.eudat.logic.proxy.config.ExternalUrlCriteria;
import eu.eudat.logic.proxy.config.exceptions.HugeResultSet;
import eu.eudat.logic.proxy.config.exceptions.NoURLFound;
import eu.eudat.logic.services.ApiContext;
import eu.eudat.models.data.taxonomy.TaxonomyModel;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.stereotype.Component;
import java.util.LinkedList;
import java.util.List;
import java.util.Map;
import java.util.stream.Collectors;
@Component
public class TaxonomyManager {
private ApiContext apiContext;
@Autowired
public TaxonomyManager(ApiContext apiContext) {
this.apiContext = apiContext;
}
public List<TaxonomyModel> getTaxonomies(String query, String type) throws HugeResultSet, NoURLFound {
ExternalUrlCriteria externalUrlCriteria = new ExternalUrlCriteria(query);
List<Map<String, String>> remoteRepos = this.apiContext.getOperationsContext().getRemoteFetcher().getTaxonomies(externalUrlCriteria, type);
DataRepositoryCriteria criteria = new DataRepositoryCriteria();
if (!query.isEmpty()) criteria.setLike(query);
List<TaxonomyModel> taxonomyModels = new LinkedList<>();
ObjectMapper mapper = new ObjectMapper().configure(DeserializationFeature.FAIL_ON_UNKNOWN_PROPERTIES, false);
taxonomyModels.addAll(remoteRepos.stream().map(item -> mapper.convertValue(item, TaxonomyModel.class)).collect(Collectors.toList()));
taxonomyModels = taxonomyModels.stream().filter(licenseModel -> licenseModel.getName().toLowerCase().contains(query.toLowerCase())).collect(Collectors.toList());
return taxonomyModels;
}
}

220
dmp-backend/web/src/main/java/eu/eudat/logic/mapper/prefilling/PrefillingMapper.java Normal file
View File

@ -0,0 +1,220 @@
package eu.eudat.logic.mapper.prefilling;
import com.fasterxml.jackson.core.JsonProcessingException;
import com.fasterxml.jackson.databind.DeserializationFeature;
import com.fasterxml.jackson.databind.JsonNode;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.eudat.data.entities.Dataset;
import eu.eudat.data.entities.DatasetProfile;
import eu.eudat.elastic.entities.Tag;
import eu.eudat.logic.managers.DatasetManager;
import eu.eudat.logic.managers.DatasetProfileManager;
import eu.eudat.logic.proxy.config.entities.DefaultPrefillingMapping;
import eu.eudat.logic.proxy.config.entities.PrefillingFixedMapping;
import eu.eudat.logic.proxy.config.entities.PrefillingGet;
import eu.eudat.logic.proxy.config.entities.PrefillingMapping;
import eu.eudat.logic.utilities.helpers.StreamDistinctBy;
import eu.eudat.logic.utilities.json.JsonSearcher;
import eu.eudat.models.data.components.commons.datafield.AutoCompleteData;
import eu.eudat.models.data.datasetprofile.DatasetProfileOverviewModel;
import eu.eudat.models.data.datasetprofile.RenderStyle;
import eu.eudat.models.data.datasetwizard.DatasetWizardModel;
import eu.eudat.models.data.externaldataset.ExternalAutocompleteFieldModel;
import org.json.JSONObject;
import java.lang.reflect.InvocationTargetException;
import java.lang.reflect.Method;
import java.time.LocalDate;
import java.time.format.DateTimeFormatter;
import java.util.*;
import java.util.stream.Collectors;
public class PrefillingMapper {
private static final ObjectMapper mapper = new ObjectMapper().configure(DeserializationFeature.ACCEPT_SINGLE_VALUE_AS_ARRAY, true);
public static DatasetWizardModel mapPrefilledEntityToDatasetWizard(Map<String, Object> prefilledEntity, PrefillingGet prefillingGet, String type,
DatasetProfile profile, DatasetManager datasetManager) throws Exception {
DatasetWizardModel datasetWizardModel = new DatasetWizardModel();
datasetWizardModel.setProfile(new DatasetProfileOverviewModel().fromDataModel(profile));
Dataset dataset = new Dataset();
dataset.setProfile(profile);
Map<String, Object> properties = new HashMap<>();
JsonNode parentNode = mapper.readTree(mapper.writeValueAsString(datasetManager.getPagedProfile(datasetWizardModel, dataset)));
for (DefaultPrefillingMapping prefillingMapping: prefillingGet.getMappings()) {
List<String> sourceKeys = Arrays.asList(prefillingMapping.getSource().split("\\."));
Object sourceValue = null;
for (String sourceKey: sourceKeys) {
if (sourceValue == null) {
sourceValue = prefilledEntity.get(sourceKey);
} else if (sourceValue instanceof Map) {
sourceValue = ((Map)sourceValue).get(sourceKey);
}
}
setValue(prefillingMapping, mapper.writeValueAsString(sourceValue), datasetWizardModel, parentNode, properties, type);
}
for (PrefillingFixedMapping fixedMapping: prefillingGet.getFixedMappings()) {
setValue(fixedMapping, fixedMapping.getValue(), datasetWizardModel, parentNode, properties, type);
}
dataset.setProperties(mapper.writeValueAsString(properties));
datasetWizardModel.setDatasetProfileDefinition(datasetManager.getPagedProfile(datasetWizardModel, dataset));
return datasetWizardModel;
}
private static void setValue(PrefillingMapping prefillingMapping, String value, DatasetWizardModel datasetWizardModel, JsonNode parentNode, Map<String, Object> properties, String type) throws InvocationTargetException, IllegalAccessException, JsonProcessingException {
String trimRegex = prefillingMapping.getTrimRegex() != null ? prefillingMapping.getTrimRegex() : "";
if (!value.startsWith("\"") && !value.startsWith("[") && !value.equals("null")) {
value = "\"" + value + "\"";
}
JsonNode valueNode = mapper.readTree(value);
List<String> parsedValues = new ArrayList<>();
if (valueNode.isArray() && (!valueNode.get(0).isTextual())) {
if (prefillingMapping.getSubSource() == null || prefillingMapping.getSubSource().isEmpty()) {
throw new IllegalArgumentException("Source value is an array but no subSource field have been set");
}
String parsedValue;
for(int i = 0; i < valueNode.size(); i++){
JsonNode jsonObj = valueNode.get(i);
String subSource = jsonObj.get(prefillingMapping.getSubSource()).asText();
parsedValue = subSource.replaceAll(trimRegex, "");
parsedValues.add(parsedValue);
}
parsedValues = parsedValues.stream().distinct().collect(Collectors.toList());
}
String parsedValue = null;
if (valueNode.isTextual()) {
parsedValue = valueNode.textValue().replace(trimRegex, "");
}else if (valueNode.isArray() && valueNode.get(0).isTextual()) {
List<String> values = new LinkedList<>();
for (int i = 0; i < valueNode.size(); i++) {
values.add(valueNode.get(i).textValue().replace(trimRegex, ""));
}
parsedValue = String.join(", ", values);
}
if (prefillingMapping.getTarget() != null) {
try {
String methodName = "set" + prefillingMapping.getTarget().substring(0, 1).toUpperCase(Locale.ROOT) + prefillingMapping.getTarget().substring(1);
Method setterMethod = Arrays.stream(DatasetWizardModel.class.getDeclaredMethods())
.filter(method -> method.getName().equals(methodName)).collect(Collectors.toList()).get(0);
Class<?>[] params = setterMethod.getParameterTypes();
//GK: Tags Special logic
if (parsedValue != null && !parsedValue.equals("null") && prefillingMapping.getTarget().equals("tags")) {
parsedValue = mapper.valueToTree(parseTags(parsedValue)).toString();
} else {
parsedValue = mapper.valueToTree(parsedValue).toString();
}
setterMethod.invoke(datasetWizardModel, mapper.readValue(parsedValue, params[0]));
}catch (InvocationTargetException | IllegalAccessException | JsonProcessingException e) {
throw e;
}
} else {
List<JsonNode> nodes = JsonSearcher.findNodes(parentNode, "rdaProperty", prefillingMapping.getMaDmpTarget());
// zenodo prefilling customizations
if(type.equals("zenodo")){
if(prefillingMapping.getMaDmpTarget().equals("dataset.distribution.data_access")){
if(parsedValue != null && parsedValue.equals("open")){
List<JsonNode> issuedNodes = JsonSearcher.findNodes(parentNode, "rdaProperty", "dataset.issued");
if(!issuedNodes.isEmpty()){
String issuedIdNode = issuedNodes.get(0).get("id").asText();
String issuedValue = (String) properties.get(issuedIdNode);
List<JsonNode> licStartDateNodes = JsonSearcher.findNodes(parentNode, "rdaProperty", "dataset.distribution.license.start_date");
for (JsonNode licStartDateNode : licStartDateNodes) {
String licStartDateId = licStartDateNode.get(0) != null ? licStartDateNode.get(0).get("id").asText() : licStartDateNode.get("id").asText();
properties.put(licStartDateId, issuedValue);
}
}
}
}
if (prefillingMapping.getMaDmpTarget().equals("dataset.distribution.available_until") && parsedValue != null && !parsedValue.equals("null")) {
DateTimeFormatter formatter = DateTimeFormatter.ofPattern("uuuu-MM-dd");
LocalDate date = LocalDate.parse(parsedValue, formatter);
date = date.plusYears(20);
parsedValue = date.toString();
}
}
for (JsonNode node: nodes) {
String id = node.isArray() ? node.get(0).get("id").asText() : node.get("id").asText();
String renderStyle = node.isArray() ? node.get(0).get("viewStyle").get("renderStyle").asText() : node.get("viewStyle").get("renderStyle").asText();
switch (RenderStyle.fromValue(renderStyle)) {
case COMBO_BOX:
if (parsedValues.isEmpty())
parsedValues.add(parsedValue);
properties.put(id, parseComboBoxValues(node, parsedValues));
break;
case TAGS:
properties.put(id, mapper.valueToTree(parseTags(parsedValue)).toString());
break;
case DATASET_IDENTIFIER:
JSONObject datasetID = new JSONObject();
datasetID.put("identifier", parsedValue);
if(type.equals("zenodo")){
datasetID.put("type", "doi");
}
properties.put(id, datasetID.toString());
break;
default:
if (!parsedValues.isEmpty())
properties.put(id, String.join(", ", parsedValues));
else {
properties.put(id, parsedValue);
}
break;
}
}
}
}
private static Object parseComboBoxValues(JsonNode node, List<String> parsedValues) throws JsonProcessingException {
List<Object> normalizedValues = new ArrayList<>();
boolean isMultiSelect;
String type = node.isArray() ? node.get(0).get("data").get("type").asText() : node.get("data").get("type").asText();
if(type.equals("autocomplete")) {
JsonNode dataNode = node.isArray() ? node.get(0).get("data") : node.get("data");
AutoCompleteData autoCompleteData = mapper.treeToValue(dataNode, AutoCompleteData.class);
isMultiSelect = autoCompleteData.getMultiAutoComplete();
for (String format : parsedValues) {
List<ExternalAutocompleteFieldModel> result = DatasetProfileManager.getAutocomplete(autoCompleteData, format);
result = result.stream().filter(StreamDistinctBy.distinctByKey(ExternalAutocompleteFieldModel::getId)).collect(Collectors.toList());
if(!result.isEmpty()){
List<String> tempValues = new LinkedList<>();
for (ExternalAutocompleteFieldModel f : result) {
if (format.equals(f.getId()) || f.getLabel().toUpperCase(Locale.ROOT).contains(format.toUpperCase(Locale.ROOT)))
tempValues.add(mapper.valueToTree(f).toString());
}
if (isMultiSelect)
normalizedValues.addAll(tempValues);
else if (!tempValues.isEmpty())
normalizedValues.add(tempValues.get(0));
}
}
return !normalizedValues.isEmpty() ? (isMultiSelect ? normalizedValues : normalizedValues.get(0)) : null;
} else {
JsonNode optionsNode = node.isArray() ? node.get(0).get("data").get("options") : node.get("data").get("options");
isMultiSelect = node.isArray() ? node.get(0).get("data").get("multiList").booleanValue() : node.get("data").get("multiList").booleanValue();
for (int i = 0; i < optionsNode.size(); i++) {
String value = optionsNode.get(i).get("value").textValue();
if (parsedValues.contains(value)) {
normalizedValues.add(value);
}
}
List<String> normalizedStringValues = normalizedValues.stream().map(Object::toString).collect(Collectors.toList());
return !normalizedValues.isEmpty() ? (isMultiSelect ? String.join(", ", normalizedStringValues) : normalizedValues.get(0)) : null;
}
}
private static List<Tag> parseTags(String value) throws JsonProcessingException {
if (value == null || value.isEmpty())
return new LinkedList<>();
String[] rawTags = value.split(", ");
List<Tag> parsedTags = new LinkedList<>();
for (String rawTag : rawTags) {
parsedTags.add(new Tag(rawTag, rawTag));
}
return parsedTags;
}
}

57
dmp-backend/web/src/main/java/eu/eudat/logic/proxy/config/ExternalUrls.java
View File

@ -2,10 +2,13 @@ package eu.eudat.logic.proxy.config;
import eu.eudat.logic.proxy.config.entities.*;
import eu.eudat.logic.proxy.config.prefilling.PrefillingConfigMapAdapter;
import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlRootElement;
import javax.xml.bind.annotation.adapters.XmlJavaTypeAdapter;
import java.io.Serializable;
import java.util.Map;
@XmlRootElement
public class ExternalUrls implements Serializable {
@ -18,6 +21,10 @@ public class ExternalUrls implements Serializable {
ProjectUrls projects;
RegistryUrls registries;
RepositoryUrls repositories;
PubRepositoryUrls pubRepositories;
JournalUrls journals;
TaxonomiesUrls taxonomies;
PublicationsUrls publications;
ServiceUrls services;
ResearcherUrls researchers;
OrganisationUrls organisations;
@ -26,6 +33,7 @@ public class ExternalUrls implements Serializable {
FunderUrls funders;
LicenseUrls licenses;
ValidationUrls validations;
Map<String, PrefillingConfig> prefillings;
public RegistryUrls getRegistries() {
@ -47,6 +55,45 @@ public class ExternalUrls implements Serializable {
this.repositories = repositories;
}
public PubRepositoryUrls getPubRepositories() {
return pubRepositories;
}
public void setPubRepositories(PubRepositoryUrls pubRepositories) {
this.pubRepositories = pubRepositories;
}
public void setJournals(JournalUrls journals) {
this.journals = journals;
}
public JournalUrls getJournals() {
return journals;
}
public JournalUrls getJournal() {
return journals;
}
@XmlElement(name = "journals")
public void setJournal(JournalUrls journal) {
this.journals = journal;
}
public TaxonomiesUrls getTaxonomies() {
return taxonomies;
}
@XmlElement(name = "taxonomies")
public void setTaxonomies(TaxonomiesUrls taxonomies) {
this.taxonomies = taxonomies;
}
public PublicationsUrls getPublications() {
return publications;
}
public void setPublications(PublicationsUrls publications) {
this.publications = publications;
}
public ServiceUrls getServices() {
return services;
@ -153,6 +200,16 @@ public class ExternalUrls implements Serializable {
public void setValidations(ValidationUrls validations) {
this.validations = validations;
}
public Map<String, PrefillingConfig> getPrefillings() {
return prefillings;
}
@XmlJavaTypeAdapter(PrefillingConfigMapAdapter.class)
@XmlElement(name = "prefillings")
public void setPrefillings(Map<String, PrefillingConfig> prefillings) {
this.prefillings = prefillings;
}
}

2
dmp-backend/web/src/main/java/eu/eudat/logic/proxy/config/entities/DatasetUrls.java
View File

@ -8,7 +8,7 @@ import javax.xml.bind.annotation.XmlElementWrapper;
import java.util.List;
public class DatasetUrls {
public class DatasetUrls extends GenericUrls{
List<UrlConfiguration> urls;
FetchStrategy fetchMode;

58
dmp-backend/web/src/main/java/eu/eudat/logic/proxy/config/entities/DefaultPrefillingMapping.java Normal file
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@ -0,0 +1,58 @@
package eu.eudat.logic.proxy.config.entities;
import javax.xml.bind.annotation.XmlAttribute;
import javax.xml.bind.annotation.XmlRootElement;
@XmlRootElement(name = "mapping")
public class DefaultPrefillingMapping implements PrefillingMapping{
private String source;
private String target;
private String maDmpTarget;
private String subSource;
private String trimRegex;
public String getSource() {
return source;
}
@XmlAttribute(name = "source")
public void setSource(String source) {
this.source = source;
}
public String getTarget() {
return target;
}
@XmlAttribute(name = "target")
public void setTarget(String target) {
this.target = target;
}
public String getMaDmpTarget() {
return maDmpTarget;
}
@XmlAttribute(name = "maDmpTarget")
public void setMaDmpTarget(String maDmpTarget) {
this.maDmpTarget = maDmpTarget;
}
public String getSubSource() {
return subSource;
}
@XmlAttribute(name = "subSource")
public void setSubSource(String subSource) {
this.subSource = subSource;
}
public String getTrimRegex() {
return trimRegex;
}
@XmlAttribute(name = "trimRegex")
public void setTrimRegex(String trimRegex) {
this.trimRegex = trimRegex;
}
}

2
dmp-backend/web/src/main/java/eu/eudat/logic/proxy/config/entities/FunderUrls.java
View File

@ -7,7 +7,7 @@ import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlElementWrapper;
import java.util.List;
public class FunderUrls {
public class FunderUrls extends GenericUrls{
List<UrlConfiguration> urls;
FetchStrategy fetchMode;

12
dmp-backend/web/src/main/java/eu/eudat/logic/proxy/config/entities/GenericUrls.java Normal file
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@ -0,0 +1,12 @@
package eu.eudat.logic.proxy.config.entities;
import eu.eudat.logic.proxy.config.FetchStrategy;
import eu.eudat.logic.proxy.config.UrlConfiguration;
import java.util.List;
public abstract class GenericUrls {
public abstract List<UrlConfiguration> getUrls();
public abstract FetchStrategy getFetchMode();
}

2
dmp-backend/web/src/main/java/eu/eudat/logic/proxy/config/entities/GrantUrls.java
View File

@ -8,7 +8,7 @@ import javax.xml.bind.annotation.XmlElementWrapper;
import java.util.List;
public class GrantUrls {
public class GrantUrls extends GenericUrls{
List<UrlConfiguration> urls;
FetchStrategy fetchMode;

34
dmp-backend/web/src/main/java/eu/eudat/logic/proxy/config/entities/JournalUrls.java Normal file
View File

@ -0,0 +1,34 @@
package eu.eudat.logic.proxy.config.entities;
import eu.eudat.logic.proxy.config.FetchStrategy;
import eu.eudat.logic.proxy.config.UrlConfiguration;
import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlElementWrapper;
import java.util.List;
public class JournalUrls extends GenericUrls{
List<UrlConfiguration> urls;
FetchStrategy fetchMode;
public List<UrlConfiguration> getUrls() {
return urls;
}
@XmlElementWrapper
@XmlElement(name = "urlConfig")
public void setUrls(List<UrlConfiguration> urls) {
this.urls = urls;
}
public FetchStrategy getFetchMode() {
return fetchMode;
}
@XmlElement(name = "fetchMode")
public void setFetchMode(FetchStrategy fetchMode) {
this.fetchMode = fetchMode;
}
}

2
dmp-backend/web/src/main/java/eu/eudat/logic/proxy/config/entities/LicenseUrls.java
View File

@ -8,7 +8,7 @@ import javax.xml.bind.annotation.XmlElementWrapper;
import java.util.List;
public class LicenseUrls {
public class LicenseUrls extends GenericUrls{
List<UrlConfiguration> urls;
FetchStrategy fetchMode;

2
dmp-backend/web/src/main/java/eu/eudat/logic/proxy/config/entities/OrganisationUrls.java
View File

@ -7,7 +7,7 @@ import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlElementWrapper;
import java.util.List;
public class OrganisationUrls {
public class OrganisationUrls extends GenericUrls{
List<UrlConfiguration> urls;
FetchStrategy fetchMode;

41
dmp-backend/web/src/main/java/eu/eudat/logic/proxy/config/entities/PrefillingConfig.java Normal file
View File

@ -0,0 +1,41 @@
package eu.eudat.logic.proxy.config.entities;
import javax.xml.bind.annotation.XmlAttribute;
import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlRootElement;
@XmlRootElement(name = "config")
public class PrefillingConfig {
private PrefillingSearch prefillingSearch;
private PrefillingGet prefillingGet;
private String type;
public PrefillingSearch getPrefillingSearch() {
return prefillingSearch;
}
@XmlElement(name = "prefillingSearch")
public void setPrefillingSearch(PrefillingSearch prefillingSearch) {
this.prefillingSearch = prefillingSearch;
}
public PrefillingGet getPrefillingGet() {
return prefillingGet;
}
@XmlElement(name = "prefillingGet")
public void setPrefillingGet(PrefillingGet prefillingGet) {
this.prefillingGet = prefillingGet;
}
@XmlAttribute(name = "type")
public void setType(String type) {
this.type = type;
}
public String getType(){
return type;
}
}

48
dmp-backend/web/src/main/java/eu/eudat/logic/proxy/config/entities/PrefillingFixedMapping.java Normal file
View File

@ -0,0 +1,48 @@
package eu.eudat.logic.proxy.config.entities;
import javax.xml.bind.annotation.XmlAttribute;
import javax.xml.bind.annotation.XmlRootElement;
@XmlRootElement(name = "fixedMapping")
public class PrefillingFixedMapping implements PrefillingMapping{
private String target;
private String maDmpTarget;
private String value;
public String getTarget() {
return target;
}
@XmlAttribute(name = "target")
public void setTarget(String target) {
this.target = target;
}
public String getMaDmpTarget() {
return maDmpTarget;
}
@XmlAttribute(name = "maDmpTarget")
public void setMaDmpTarget(String maDmpTarget) {
this.maDmpTarget = maDmpTarget;
}
@Override
public String getSubSource() {
return "";
}
@Override
public String getTrimRegex() {
return "";
}
public String getValue() {
return value;
}
@XmlAttribute(name = "value")
public void setValue(String value) {
this.value = value;
}
}

40
dmp-backend/web/src/main/java/eu/eudat/logic/proxy/config/entities/PrefillingGet.java Normal file
View File

@ -0,0 +1,40 @@
package eu.eudat.logic.proxy.config.entities;
import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlElementWrapper;
import java.util.List;
public class PrefillingGet{
private String url;
private List<DefaultPrefillingMapping> mappings;
private List<PrefillingFixedMapping> fixedMappings;
public String getUrl() {
return url;
}
@XmlElement(name = "url")
public void setUrl(String url) {
this.url = url;
}
public List<DefaultPrefillingMapping> getMappings() {
return mappings;
}
@XmlElement(name = "mapping")
@XmlElementWrapper
public void setMappings(List<DefaultPrefillingMapping> mappings) {
this.mappings = mappings;
}
public List<PrefillingFixedMapping> getFixedMappings() {
return fixedMappings;
}
@XmlElement(name = "fixedMapping")
@XmlElementWrapper
public void setFixedMappings(List<PrefillingFixedMapping> fixedMappings) {
this.fixedMappings = fixedMappings;
}
}

17
dmp-backend/web/src/main/java/eu/eudat/logic/proxy/config/entities/PrefillingMapping.java Normal file
View File

@ -0,0 +1,17 @@
package eu.eudat.logic.proxy.config.entities;
import javax.xml.bind.annotation.XmlAttribute;
public interface PrefillingMapping {
String getTarget();
void setTarget(String target);
String getMaDmpTarget();
void setMaDmpTarget(String maDmpTarget);
String getSubSource();
String getTrimRegex();
}

33
dmp-backend/web/src/main/java/eu/eudat/logic/proxy/config/entities/PrefillingSearch.java Normal file
View File

@ -0,0 +1,33 @@
package eu.eudat.logic.proxy.config.entities;
import eu.eudat.logic.proxy.config.FetchStrategy;
import eu.eudat.logic.proxy.config.UrlConfiguration;
import javax.xml.bind.annotation.XmlElement;
import java.util.ArrayList;
import java.util.List;
public class PrefillingSearch extends GenericUrls{
private UrlConfiguration urlConfig;
public UrlConfiguration getUrlConfig() {
return urlConfig;
}
@XmlElement(name = "urlConfig")
public void setUrlConfig(UrlConfiguration urlConfig) {
this.urlConfig = urlConfig;
}
@Override
public List<UrlConfiguration> getUrls() {
List<UrlConfiguration> urls = new ArrayList<>();
urls.add(urlConfig);
return urls;
}
@Override
public FetchStrategy getFetchMode() {
return null;
}
}

2
dmp-backend/web/src/main/java/eu/eudat/logic/proxy/config/entities/ProjectUrls.java
View File

@ -7,7 +7,7 @@ import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlElementWrapper;
import java.util.List;
public class ProjectUrls {
public class ProjectUrls extends GenericUrls{
List<UrlConfiguration> urls;
FetchStrategy fetchMode;

34
dmp-backend/web/src/main/java/eu/eudat/logic/proxy/config/entities/PubRepositoryUrls.java Normal file
View File

@ -0,0 +1,34 @@
package eu.eudat.logic.proxy.config.entities;
import eu.eudat.logic.proxy.config.FetchStrategy;
import eu.eudat.logic.proxy.config.UrlConfiguration;
import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlElementWrapper;
import java.util.List;
public class PubRepositoryUrls extends GenericUrls{
List<UrlConfiguration> urls;
FetchStrategy fetchMode;
public List<UrlConfiguration> getUrls() {
return urls;
}
@XmlElementWrapper
@XmlElement(name = "urlConfig")
public void setUrls(List<UrlConfiguration> urls) {
this.urls = urls;
}
public FetchStrategy getFetchMode() {
return fetchMode;
}
@XmlElement(name = "fetchMode")
public void setFetchMode(FetchStrategy fetchMode) {
this.fetchMode = fetchMode;
}
}

34
dmp-backend/web/src/main/java/eu/eudat/logic/proxy/config/entities/PublicationsUrls.java Normal file
View File

@ -0,0 +1,34 @@
package eu.eudat.logic.proxy.config.entities;
import eu.eudat.logic.proxy.config.FetchStrategy;
import eu.eudat.logic.proxy.config.UrlConfiguration;
import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlElementWrapper;
import java.util.List;
public class PublicationsUrls extends GenericUrls{
List<UrlConfiguration> urls;
FetchStrategy fetchMode;
public List<UrlConfiguration> getUrls() {
return urls;
}
@XmlElementWrapper
@XmlElement(name = "urlConfig")
public void setUrls(List<UrlConfiguration> urls) {
this.urls = urls;
}
public FetchStrategy getFetchMode() {
return fetchMode;
}
@XmlElement(name = "fetchMode")
public void setFetchMode(FetchStrategy fetchMode) {
this.fetchMode = fetchMode;
}
}

2
dmp-backend/web/src/main/java/eu/eudat/logic/proxy/config/entities/RegistryUrls.java
View File

@ -7,7 +7,7 @@ import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlElementWrapper;
import java.util.List;
public class RegistryUrls {
public class RegistryUrls extends GenericUrls{
List<UrlConfiguration> urls;
FetchStrategy fetchMode;

2
dmp-backend/web/src/main/java/eu/eudat/logic/proxy/config/entities/RepositoryUrls.java
View File

@ -7,7 +7,7 @@ import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlElementWrapper;
import java.util.List;
public class RepositoryUrls {
public class RepositoryUrls extends GenericUrls{
List<UrlConfiguration> urls;
FetchStrategy fetchMode;

2
dmp-backend/web/src/main/java/eu/eudat/logic/proxy/config/entities/ResearcherUrls.java
View File

@ -7,7 +7,7 @@ import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlElementWrapper;
import java.util.List;
public class ResearcherUrls {
public class ResearcherUrls extends GenericUrls{
List<UrlConfiguration> urls;
FetchStrategy fetchMode;

2
dmp-backend/web/src/main/java/eu/eudat/logic/proxy/config/entities/ServiceUrls.java
View File

@ -7,7 +7,7 @@ import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlElementWrapper;
import java.util.List;
public class ServiceUrls {
public class ServiceUrls extends GenericUrls{
List<UrlConfiguration> urls;
FetchStrategy fetchMode;

2
dmp-backend/web/src/main/java/eu/eudat/logic/proxy/config/entities/TagUrls.java
View File

@ -10,7 +10,7 @@ import java.util.List;
/**
* Created by ikalyvas on 7/9/2018.
*/
public class TagUrls {
public class TagUrls extends GenericUrls{
List<UrlConfiguration> urls;
FetchStrategy fetchMode;

34
dmp-backend/web/src/main/java/eu/eudat/logic/proxy/config/entities/TaxonomiesUrls.java Normal file
View File

@ -0,0 +1,34 @@
package eu.eudat.logic.proxy.config.entities;
import eu.eudat.logic.proxy.config.FetchStrategy;
import eu.eudat.logic.proxy.config.UrlConfiguration;
import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlElementWrapper;
import java.util.List;
public class TaxonomiesUrls extends GenericUrls{
List<UrlConfiguration> urls;
FetchStrategy fetchMode;
public List<UrlConfiguration> getUrls() {
return urls;
}
@XmlElementWrapper
@XmlElement(name = "urlConfig")
public void setUrls(List<UrlConfiguration> urls) {
this.urls = urls;
}
public FetchStrategy getFetchMode() {
return fetchMode;
}
@XmlElement(name = "fetchMode")
public void setFetchMode(FetchStrategy fetchMode) {
this.fetchMode = fetchMode;
}
}

2
dmp-backend/web/src/main/java/eu/eudat/logic/proxy/config/entities/ValidationUrls.java
View File

@ -8,7 +8,7 @@ import javax.xml.bind.annotation.XmlElementWrapper;
import eu.eudat.logic.proxy.config.FetchStrategy;
import eu.eudat.logic.proxy.config.UrlConfiguration;
public class ValidationUrls {
public class ValidationUrls extends GenericUrls{
List<UrlConfiguration> urls;
FetchStrategy fetchMode;

35
dmp-backend/web/src/main/java/eu/eudat/logic/proxy/config/prefilling/PrefillingConfigMapAdapter.java Normal file
View File

@ -0,0 +1,35 @@
package eu.eudat.logic.proxy.config.prefilling;
import eu.eudat.logic.proxy.config.entities.PrefillingConfig;
import org.w3c.dom.Element;
import javax.xml.bind.JAXBContext;
import javax.xml.bind.Unmarshaller;
import javax.xml.bind.annotation.adapters.XmlAdapter;
import java.util.HashMap;
import java.util.Map;
public class PrefillingConfigMapAdapter extends XmlAdapter<Object, Map<String, PrefillingConfig>> {
@Override
public Map<String, PrefillingConfig> unmarshal(Object v) throws Exception {
Map<String, PrefillingConfig> configMap = new HashMap<>();
Element element = (Element) v;
JAXBContext jaxbContext = JAXBContext.newInstance(PrefillingConfig.class);
Unmarshaller jaxbUnmarshaller = jaxbContext.createUnmarshaller();
for (int i = 0; i < element.getChildNodes().getLength(); i++) {
if (element.getChildNodes().item(i).getAttributes() == null) {
continue;
}
String id = element.getChildNodes().item(i).getAttributes().getNamedItem("id").getNodeValue();
PrefillingConfig prefillingConfig = (PrefillingConfig) jaxbUnmarshaller.unmarshal(element.getChildNodes().item(i));
prefillingConfig = configMap.put(id, prefillingConfig);
System.out.println(prefillingConfig);
}
return configMap;
}
@Override
public Object marshal(Map<String, PrefillingConfig> v) throws Exception {
return null;
}
}

56
dmp-backend/web/src/main/java/eu/eudat/logic/proxy/fetching/RemoteFetcher.java
View File

@ -10,6 +10,7 @@ import eu.eudat.logic.proxy.config.ExternalUrlCriteria;
import eu.eudat.logic.proxy.config.FetchStrategy;
import eu.eudat.logic.proxy.config.UrlConfiguration;
import eu.eudat.logic.proxy.config.configloaders.ConfigLoader;
import eu.eudat.logic.proxy.config.entities.GenericUrls;
import eu.eudat.logic.proxy.config.exceptions.HugeResultSet;
import eu.eudat.logic.proxy.config.exceptions.NoURLFound;
import eu.eudat.logic.proxy.fetching.entities.Results;
@ -49,6 +50,38 @@ public class RemoteFetcher {
FetchStrategy fetchStrategy = configLoader.getExternalUrls().getRepositories().getFetchMode();
return getAll(urlConfigs, fetchStrategy, externalUrlCriteria);
}
@Cacheable(value = "pubrepos", keyGenerator = "externalUrlsKeyGenerator")
public List<Map<String, String>> getPubRepositories(ExternalUrlCriteria externalUrlCriteria, String key) throws NoURLFound, HugeResultSet {
List<UrlConfiguration> urlConfigs =
key != null && !key.isEmpty() ? configLoader.getExternalUrls().getPubRepositories().getUrls().stream().filter(item -> item.getKey().equals(key)).collect(Collectors.toList())
: configLoader.getExternalUrls().getPubRepositories().getUrls();
FetchStrategy fetchStrategy = configLoader.getExternalUrls().getPubRepositories().getFetchMode();
return getAll(urlConfigs, fetchStrategy, externalUrlCriteria);
}
@Cacheable(value = "journals", keyGenerator = "externalUrlsKeyGenerator")
public List<Map<String, String>> getJournals(ExternalUrlCriteria externalUrlCriteria, String key) throws NoURLFound, HugeResultSet {
List<UrlConfiguration> urlConfigs =
key != null && !key.isEmpty() ? configLoader.getExternalUrls().getJournals().getUrls().stream().filter(item -> item.getKey().equals(key)).collect(Collectors.toList())
: configLoader.getExternalUrls().getJournals().getUrls();
FetchStrategy fetchStrategy = configLoader.getExternalUrls().getJournals().getFetchMode();
return getAll(urlConfigs, fetchStrategy, externalUrlCriteria);
}
@Cacheable(value = "taxonomies", keyGenerator = "externalUrlsKeyGenerator")
public List<Map<String, String>> getTaxonomies(ExternalUrlCriteria externalUrlCriteria, String key) throws NoURLFound, HugeResultSet {
List<UrlConfiguration> urlConfigs =
key != null && !key.isEmpty() ? configLoader.getExternalUrls().getTaxonomies().getUrls().stream().filter(item -> item.getKey().equals(key)).collect(Collectors.toList())
: configLoader.getExternalUrls().getTaxonomies().getUrls();
FetchStrategy fetchStrategy = configLoader.getExternalUrls().getTaxonomies().getFetchMode();
return getAll(urlConfigs, fetchStrategy, externalUrlCriteria);
}
@Cacheable(value = "publications", keyGenerator = "externalUrlsKeyGenerator")
public List<Map<String, String>> getPublications(ExternalUrlCriteria externalUrlCriteria, String key) throws NoURLFound, HugeResultSet {
List<UrlConfiguration> urlConfigs =
key != null && !key.isEmpty() ? configLoader.getExternalUrls().getPublications().getUrls().stream().filter(item -> item.getKey().equals(key)).collect(Collectors.toList())
: configLoader.getExternalUrls().getPublications().getUrls();
FetchStrategy fetchStrategy = configLoader.getExternalUrls().getPublications().getFetchMode();
return getAll(urlConfigs, fetchStrategy, externalUrlCriteria);
}
@Cacheable(value = "grants", keyGenerator = "externalUrlsKeyGenerator")
public List<Map<String, String>> getGrants(ExternalUrlCriteria externalUrlCriteria) throws NoURLFound, HugeResultSet {
@ -143,6 +176,12 @@ public class RemoteFetcher {
return data.size();
}
public List<Map<String, String>> getExternalGeneric(ExternalUrlCriteria externalUrlCriteria, GenericUrls genericUrls) {
List<UrlConfiguration> urlConfigurations = genericUrls.getUrls();
FetchStrategy fetchStrategy = genericUrls.getFetchMode();
return getAll(urlConfigurations, fetchStrategy, externalUrlCriteria);
}
private List<Map<String, String>> getAll(List<UrlConfiguration> urlConfigs, FetchStrategy fetchStrategy, ExternalUrlCriteria externalUrlCriteria) {
@ -297,21 +336,12 @@ public class RemoteFetcher {
if (response.getHeaders().get("Content-Type").get(0).contains("json")) {
DocumentContext jsonContext = JsonPath.parse(response.getBody());
if (jsonDataPath.getFieldsUrlConfiguration().getSource() != null) {
results = RemoteFetcherUtils.getFromJsonWithSource(jsonContext, jsonDataPath);
} else if (jsonDataPath.getFieldsUrlConfiguration().getCount() != null) { // parsing services.openaire.eu
results = RemoteFetcherUtils.getFromJsonWithParsedData(jsonContext, jsonDataPath);
} else if (jsonDataPath.getFieldsUrlConfiguration().getPath() != null) {
if (jsonDataPath.getFieldsUrlConfiguration().getPath() != null) {
results = RemoteFetcherUtils.getFromJsonWithRecursiveFetching(jsonContext, jsonDataPath, this, requestBody, requestType);
} else if (jsonDataPath.getFieldsUrlConfiguration().getTypes() != null) {
results = RemoteFetcherUtils.getFromJsonWithType(jsonContext, jsonDataPath);
} else if (jsonDataPath.getFieldsUrlConfiguration().getFirstName() != null) {
results = RemoteFetcherUtils.getFromJsonWithFirstAndLastName(jsonContext, jsonDataPath);
} else {
results = new Results(jsonContext.read(jsonDataPath.getPath()
+ "[" + jsonDataPath.getFieldsUrlConfiguration().getName() + "," + jsonDataPath.getFieldsUrlConfiguration().getDescription()
+ "," + jsonDataPath.getFieldsUrlConfiguration().getUri() + "," + jsonDataPath.getFieldsUrlConfiguration().getId() + "]"),
new HashMap<>(1, 1));
results = RemoteFetcherUtils.getFromJson(jsonContext, jsonDataPath);
}
results.setResults(results.getResults().stream().map(e -> e.entrySet().stream().collect(Collectors.toMap(x -> this.transformKey(jsonDataPath,x.getKey()), Map.Entry::getValue)))
.collect(Collectors.toList()));
@ -370,6 +400,10 @@ public class RemoteFetcher {
results = new Results(values, new HashMap<>(1, 1));
}
if (results.getPagination().size() == 0) {
results.getPagination().put("pages", 1);
results.getPagination().put("count", results.getResults().size());
}
return results;
}
} catch (Exception exception) {

136
dmp-backend/web/src/main/java/eu/eudat/logic/proxy/fetching/RemoteFetcherUtils.java
View File

@ -1,67 +1,30 @@
package eu.eudat.logic.proxy.fetching;
import com.jayway.jsonpath.Configuration;
import com.jayway.jsonpath.DocumentContext;
import com.jayway.jsonpath.spi.json.JacksonJsonProvider;
import eu.eudat.logic.proxy.config.DataUrlConfiguration;
import eu.eudat.logic.proxy.config.ExternalUrlCriteria;
import eu.eudat.logic.proxy.fetching.entities.Results;
import net.minidev.json.JSONArray;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import java.lang.reflect.InvocationTargetException;
import java.lang.reflect.Method;
import java.util.*;
import java.util.stream.Collectors;
public class RemoteFetcherUtils {
private final static Logger logger = LoggerFactory.getLogger(RemoteFetcherUtils.class);
public static Results getFromJsonWithSource(DocumentContext jsonContext, DataUrlConfiguration jsonDataPath) {
return new Results(jsonContext.read(jsonDataPath.getPath()
+ "[" + jsonDataPath.getFieldsUrlConfiguration().getName() + "," + jsonDataPath.getFieldsUrlConfiguration().getDescription()
+ "," + jsonDataPath.getFieldsUrlConfiguration().getUri() + "," + jsonDataPath.getFieldsUrlConfiguration().getId()
+ "," + jsonDataPath.getFieldsUrlConfiguration().getSource() + "]"),
public static Results getFromJson(DocumentContext jsonContext, DataUrlConfiguration jsonDataPath) {
return new Results(parseData(jsonContext, jsonDataPath),
new HashMap<>(1, 1));
}
public static Results getFromJsonWithParsedData(DocumentContext jsonContext, DataUrlConfiguration jsonDataPath) {
Results results = new Results(jsonContext.read(jsonDataPath.getPath()
+ "[" + jsonDataPath.getFieldsUrlConfiguration().getName()
+ "," + jsonDataPath.getFieldsUrlConfiguration().getId() + "]"),
new HashMap<>(1, 1));
List<Map<String, String>> fixedResults = results.getResults().stream().map(item -> {
for (int i = 0; i < 2; i++) {
String id;
if (i == 0) {
id = jsonDataPath.getFieldsUrlConfiguration().getId().replace("'", "");
} else {
id = jsonDataPath.getFieldsUrlConfiguration().getName().replace("'", "");
}
if (!(item.get(id) instanceof String)) {
Object obj = item.get(id);
if (obj instanceof JSONArray) {
JSONArray jarr = (JSONArray) obj;
if (jarr.get(0) instanceof String) {
item.put(id, jarr.get(0).toString());
} else {
for (int j = 0; j < jarr.size(); j++) {
mapToMap(id, (Map<String, String>)jarr.get(j), item, i == 1);
}
}
} else {
if (obj instanceof Map) {
mapToMap(id, (Map<String, String>) obj, item, i == 1);
} else if (obj != null){
item.put(id, obj.toString());
}
}
}
}
return item;
}).collect(Collectors.toList());
return new Results(fixedResults, new HashMap<>(1, 1));
}
public static Results getFromJsonWithRecursiveFetching(DocumentContext jsonContext, DataUrlConfiguration jsonDataPath, RemoteFetcher remoteFetcher, String requestBody, String requestType) {
Results results = new Results(jsonContext.read(jsonDataPath.getPath()
+ "[" + jsonDataPath.getFieldsUrlConfiguration().getPath()
+ "," + jsonDataPath.getFieldsUrlConfiguration().getHost() + "]"),
Results results = new Results(parseData(jsonContext, jsonDataPath),
new HashMap<>(1, 1));
List<Map<String, String>> multiResults = results.getResults().stream().map(result -> {
@ -74,34 +37,8 @@ public class RemoteFetcherUtils {
return new Results(multiResults, new HashMap<>(1, 1));
}
public static Results getFromJsonWithType(DocumentContext jsonContext, DataUrlConfiguration jsonDataPath) {
List<Map<String, Object>> tempRes = jsonContext.read(jsonDataPath.getPath()
+ "[" + jsonDataPath.getFieldsUrlConfiguration().getId() + "," + jsonDataPath.getFieldsUrlConfiguration().getName()
+ "," + jsonDataPath.getFieldsUrlConfiguration().getTypes() + "," + jsonDataPath.getFieldsUrlConfiguration().getUri() + "]");
List<Map<String, String>> finalRes = new ArrayList<>();
tempRes.forEach(map -> {
Map<String, String> resMap = new HashMap<>();
map.forEach((key, value) -> {
if (key.equals(jsonDataPath.getFieldsUrlConfiguration().getTypes().substring(1, jsonDataPath.getFieldsUrlConfiguration().getTypes().length() - 1))) {
resMap.put("tags", ((JSONArray) value).toJSONString());
} else if (key.equals(jsonDataPath.getFieldsUrlConfiguration().getUri().substring(1, jsonDataPath.getFieldsUrlConfiguration().getTypes().length() - 1))) {
resMap.put(key, ((JSONArray) value).toJSONString());
} else {
resMap.put(key, (String) value);
}
});
finalRes.add(resMap);
});
return new Results(finalRes,
new HashMap<>(1, 1));
}
public static Results getFromJsonWithFirstAndLastName(DocumentContext jsonContext, DataUrlConfiguration jsonDataPath) {
Results results = new Results(jsonContext.read(jsonDataPath.getPath()
+ "[" + jsonDataPath.getFieldsUrlConfiguration().getId() + "," + jsonDataPath.getFieldsUrlConfiguration().getFirstName()
+ "," + jsonDataPath.getFieldsUrlConfiguration().getLastName() + "]"),
Results results = new Results(parseData(jsonContext, jsonDataPath),
new HashMap<>(1, 1));
results.getResults().stream().forEach(entry -> {
String name = entry.get(jsonDataPath.getFieldsUrlConfiguration().getFirstName().replace("'", "")) + " " + entry.get(jsonDataPath.getFieldsUrlConfiguration().getLastName().replace("'", ""));
@ -112,17 +49,48 @@ public class RemoteFetcherUtils {
return results;
}
private static void mapToMap(String key, Map<String, String> source, Map<String, String> destination, boolean isTitle) {
if (source != null) {
String content = source.get("content");
/*if (isTitle) {
String classId = source.get("classid");
if (classId.equals("main title")) {
destination.put(key, content);
private static List<Map<String, String>> parseData (DocumentContext jsonContext, DataUrlConfiguration jsonDataPath) {
List <Map<String, Object>> rawData = jsonContext.read(jsonDataPath.getPath());
List<Map<String, String>> parsedData = new ArrayList<>();
rawData.forEach(stringObjectMap -> {
parsedData.add(new LinkedHashMap<>());
Arrays.stream(jsonDataPath.getFieldsUrlConfiguration().getClass().getDeclaredFields()).forEach(field -> {
String getterMethodName = "get" + field.getName().substring(0, 1).toUpperCase(Locale.ROOT) + field.getName().substring(1);
Method getterMethod = Arrays.stream(jsonDataPath.getFieldsUrlConfiguration().getClass().getDeclaredMethods()).filter(method -> method.getName().equals(getterMethodName)).collect(Collectors.toList()).get(0);
try {
String value = ((String) getterMethod.invoke(jsonDataPath.getFieldsUrlConfiguration()));
if (value != null) {
value = value.replace("'", "");
if (stringObjectMap.containsKey(value)) {
parsedData.get(parsedData.size() - 1).put(field.getName().equals("types") ? "tags" : value, normalizeValue(stringObjectMap.get(value), (field.getName().equals("types") || field.getName().equals("uri"))));
}
}
} catch (IllegalAccessException | InvocationTargetException e) {
logger.error(e.getLocalizedMessage(), e);
}
} else {*/
destination.put(key, content);
// }
});
});
return parsedData;
}
private static String normalizeValue(Object value, boolean jsonString) {
if (value instanceof JSONArray) {
if (jsonString) {
return ((JSONArray)value).toJSONString();
}
JSONArray jarr = (JSONArray) value;
if (jarr.get(0) instanceof String) {
return jarr.get(0).toString();
} else {
for (Object o : jarr) {
if ((o instanceof Map) && ((Map) o).containsKey("content")) {
return ((Map<String, String>) o).get("content");
}
}
}
} else if (value instanceof Map) {
return ((Map<String, String>)value).get("content");
}
return value != null ? value.toString() : null;
}
}

34
dmp-backend/web/src/main/java/eu/eudat/logic/services/forms/VisibilityRuleServiceImpl.java
View File

@ -1,30 +1,26 @@
package eu.eudat.logic.services.forms;
import eu.eudat.models.data.user.components.commons.Rule;
import org.springframework.stereotype.Service;
import java.util.*;
/**
* Created by ikalyvas on 3/5/2018.
*/
@Service("visibilityRuleService")
public class VisibilityRuleServiceImpl implements VisibilityRuleService {
private Map<String, Boolean> elementVisibility = new HashMap<>();
private VisibilityContext visibilityContext;
private final Map<String, Boolean> elementVisibility = new HashMap<>();
private Map<String, Object> properties;
public boolean isElementVisible(String id) {
if (!this.elementVisibility.containsKey(id) || this.elementVisibility.get(id)) return true;
return false;
return !this.elementVisibility.containsKey(id) || this.elementVisibility.get(id);
}
public void setProperties(Map<String, Object> properties) {
this.properties = properties;
this.properties.entrySet().stream()
.filter(stringObjectEntry -> stringObjectEntry.getValue() instanceof String && ((String) stringObjectEntry.getValue()).startsWith("[") && ((String) stringObjectEntry.getValue()).endsWith("]")).forEach(stringObjectEntry -> {
stringObjectEntry.setValue(parseArray((String) stringObjectEntry.getValue()));
});
.filter(stringObjectEntry -> stringObjectEntry.getValue() instanceof String && ((String) stringObjectEntry.getValue()).startsWith("[")
&& ((String) stringObjectEntry.getValue()).endsWith("]"))
.forEach(stringObjectEntry -> stringObjectEntry.setValue(parseArray((String) stringObjectEntry.getValue())));
}
private List<String> parseArray(String original) {
@ -33,19 +29,20 @@ public class VisibilityRuleServiceImpl implements VisibilityRuleService {
}
public void buildVisibilityContext(List<Rule> sources) {
this.visibilityContext = new VisibilityContext();
this.visibilityContext.buildVisibilityContext(sources);
this.visibilityContext.getVisibilityRules().forEach(item-> this.evaluateVisibility(item));
VisibilityContext visibilityContext = new VisibilityContext();
visibilityContext.buildVisibilityContext(sources);
visibilityContext.getVisibilityRules().forEach(this::evaluateVisibility);
}
private void evaluateVisibility(VisibilityRule rule) {
List<VisibilityRuleSource> sources = rule.getVisibilityRuleSources();
for(int i = 0; i < sources.size(); i++){
if (properties.containsKey(sources.get(i).getVisibilityRuleSourceId()) && (isContained(properties.get(sources.get(i).getVisibilityRuleSourceId()), sources.get(i).getVisibilityRuleSourceValue()) || properties.get(sources.get(i).getVisibilityRuleSourceId()).equals(sources.get(i).getVisibilityRuleSourceValue()))) {
for(VisibilityRuleSource source: sources){
if (properties.containsKey(source.getVisibilityRuleSourceId())
&& isContained(properties.get(source.getVisibilityRuleSourceId()), source.getVisibilityRuleSourceValue())) {
this.elementVisibility.put(rule.getVisibilityRuleTargetId(), true);
}else{
this.elementVisibility.put(rule.getVisibilityRuleTargetId(), false);
return;
} else {
this.elementVisibility.put(rule.getVisibilityRuleTargetId(),
this.elementVisibility.getOrDefault(rule.getVisibilityRuleTargetId(), false));
}
}
}
@ -53,7 +50,8 @@ public class VisibilityRuleServiceImpl implements VisibilityRuleService {
private Boolean isContained(Object values, String source) {
if (values instanceof List) {
return ((Collection<?>) values).contains(source);
} else {
return values.equals(source);
}
return false;
}
}

2
dmp-backend/web/src/main/java/eu/eudat/logic/services/utilities/UtilitiesService.java
View File

@ -11,7 +11,5 @@ public interface UtilitiesService {
MailService getMailService();
VisibilityRuleService getVisibilityRuleService();
ConfirmationEmailService getConfirmationEmailService();
}

10
dmp-backend/web/src/main/java/eu/eudat/logic/services/utilities/UtilitiesServiceImpl.java
View File

@ -1,6 +1,7 @@
package eu.eudat.logic.services.utilities;
import eu.eudat.logic.services.forms.VisibilityRuleService;
import eu.eudat.logic.services.forms.VisibilityRuleServiceImpl;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.stereotype.Service;
@ -12,22 +13,15 @@ public class UtilitiesServiceImpl implements UtilitiesService {
private InvitationService invitationService;
private MailService mailService;
private VisibilityRuleService visibilityRuleService;
private ConfirmationEmailService confirmationEmailService;
@Autowired
public UtilitiesServiceImpl(InvitationService invitationService, MailService mailService, VisibilityRuleService visibilityRuleService, ConfirmationEmailService confirmationEmailService) {
public UtilitiesServiceImpl(InvitationService invitationService, MailService mailService, ConfirmationEmailService confirmationEmailService) {
this.invitationService = invitationService;
this.mailService = mailService;
this.visibilityRuleService = visibilityRuleService;
this.confirmationEmailService = confirmationEmailService;
}
@Override
public VisibilityRuleService getVisibilityRuleService() {
return visibilityRuleService;
}
@Override
public ConfirmationEmailService getConfirmationEmailService() {
return confirmationEmailService;

10
dmp-backend/web/src/main/java/eu/eudat/logic/utilities/builders/ModelBuilder.java
View File

@ -88,6 +88,11 @@ public class ModelBuilder {
if (type.equals("datePicker")) return (FieldData<U>) new DatePickerData().fromData(data);
if (type.equals("externalDatasets")) return (FieldData<U>) new ExternalDatasetsData().fromData(data);
if (type.equals("dataRepositories")) return (FieldData<U>) new DataRepositoriesData().fromData(data);
if (type.equals("pubRepositories")) return (FieldData<U>) new DataRepositoriesData().fromData(data);
if (type.equals("journalRepositories")) return (FieldData<U>) new DataRepositoriesData().fromData(data);
if (type.equals("taxonomies")) return (FieldData<U>) new TaxonomiesData().fromData(data);
if (type.equals("licenses")) return (FieldData<U>) new LicensesData().fromData(data);
if (type.equals("publications")) return (FieldData<U>) new PublicationsData().fromData(data);
if (type.equals("registries")) return (FieldData<U>) new RegistriesData().fromData(data);
if (type.equals("services")) return (FieldData<U>) new ServicesData().fromData(data);
if (type.equals("tags")) return (FieldData<U>) new TagsData().fromData(data);
@ -128,6 +133,11 @@ public class ModelBuilder {
if (type.equals("datePicker")) return (FieldData<U>) new DatePickerData().fromData(data);
if (type.equals("externalDatasets")) return (FieldData<U>) new ExternalDatasetsData().fromData(data);
if (type.equals("dataRepositories")) return (FieldData<U>) new DataRepositoriesData().fromData(data);
if (type.equals("pubRepositories")) return (FieldData<U>) new DataRepositoriesData().fromData(data);
if (type.equals("journalRepositories")) return (FieldData<U>) new DataRepositoriesData().fromData(data);
if (type.equals("taxonomies")) return (FieldData<U>) new TaxonomiesData().fromData(data);
if (type.equals("licenses")) return (FieldData<U>) new LicensesData().fromData(data);
if (type.equals("publications")) return (FieldData<U>) new PublicationsData().fromData(data);
if (type.equals("registries")) return (FieldData<U>) new RegistriesData().fromData(data);
if (type.equals("services")) return (FieldData<U>) new ServicesData().fromData(data);
if (type.equals("tags")) return (FieldData<U>) new TagsData().fromData(data);

72
dmp-backend/web/src/main/java/eu/eudat/logic/utilities/documents/word/WordBuilder.java
View File

@ -27,7 +27,9 @@ import java.io.IOException;
import java.math.BigInteger;
import java.text.SimpleDateFormat;
import java.time.Instant;
import java.time.LocalDate;
import java.time.ZoneId;
import java.time.ZoneOffset;
import java.time.format.DateTimeFormatter;
import java.time.format.DateTimeParseException;
import java.time.temporal.TemporalAccessor;
@ -131,7 +133,7 @@ public class WordBuilder {
this.options.put(ParagraphStyle.COMMENT, (mainDocumentPart, item) -> {
XWPFParagraph paragraph = mainDocumentPart.createParagraph();
XWPFRun run = paragraph.createRun();
run.setText(item);
run.setText(" " + item);
run.setItalic(true);
return paragraph;
});
@ -178,7 +180,7 @@ public class WordBuilder {
number.setVal(BigInteger.valueOf(indent));
paragraphPos = mainDocumentPart.getPosOfParagraph(paragraph);
}
createSections(section.getSections(), mainDocumentPart, ParagraphStyle.HEADER5, 1, createListing, visibilityRuleService, page, tempSectionString);
createSections(section.getSections(), mainDocumentPart, ParagraphStyle.HEADER4, 1, createListing, visibilityRuleService, page, tempSectionString);
hasValue = createCompositeFields(section.getCompositeFields(), mainDocumentPart, 2, createListing, visibilityRuleService, page, tempSectionString);
if (!hasValue && paragraphPos > -1) {
@ -191,20 +193,35 @@ public class WordBuilder {
private Boolean createCompositeFields(List<FieldSet> compositeFields, XWPFDocument mainDocumentPart, Integer indent, Boolean createListing, VisibilityRuleService visibilityRuleService, Integer page, String section) {
if (createListing) this.addListing(mainDocumentPart, indent, true, true);
boolean hasValue = false;
boolean returnedValue = false;
for (FieldSet compositeField: compositeFields) {
if (visibilityRuleService.isElementVisible(compositeField.getId()) && hasVisibleFields(compositeField, visibilityRuleService)) {
char c = 'a';
int paragraphPos = -1;
if (compositeField.getTitle() != null && !compositeField.getTitle().isEmpty() && !createListing) {
XWPFParagraph paragraph = addParagraphContent(page + "." + section + "." + (compositeField.getOrdinal() +1) + " " + compositeField.getTitle(), mainDocumentPart, ParagraphStyle.HEADER6, numId);
CTDecimalNumber number = paragraph.getCTP().getPPr().getNumPr().addNewIlvl();
number.setVal(BigInteger.valueOf(indent));
paragraphPos = mainDocumentPart.getPosOfParagraph(paragraph);
if(compositeField.getMultiplicityItems() != null && !compositeField.getMultiplicityItems().isEmpty()){
addParagraphContent(c + ".\n", mainDocumentPart, ParagraphStyle.HEADER6, numId);
}
}
hasValue = createFields(compositeField.getFields(), mainDocumentPart, 3, createListing, visibilityRuleService);
if(hasValue){
returnedValue = true;
}
if (compositeField.getMultiplicityItems() != null && !compositeField.getMultiplicityItems().isEmpty()) {
List<FieldSet> list = compositeField.getMultiplicityItems().stream().sorted(Comparator.comparingInt(FieldSet::getOrdinal)).collect(Collectors.toList());
for (FieldSet multiplicityFieldset : list) {
hasValue = createFields(multiplicityFieldset.getFields(), mainDocumentPart, 3, createListing, visibilityRuleService);
if(!createListing){
c++;
addParagraphContent(c + ".\n", mainDocumentPart, ParagraphStyle.HEADER6, numId);
}
hasValue = createFields(multiplicityFieldset.getFields(), mainDocumentPart, 3, createListing, visibilityRuleService);
if(hasValue){
returnedValue = true;
}
}
}
if (hasValue && compositeField.getHasCommentField() && compositeField.getCommentFieldValue() != null && !compositeField.getCommentFieldValue().isEmpty() && !createListing) {
@ -217,20 +234,38 @@ public class WordBuilder {
}
}
}
return hasValue;
return returnedValue;
}
private Boolean createFields(List<Field> fields, XWPFDocument mainDocumentPart, Integer indent, Boolean createListing, VisibilityRuleService visibilityRuleService) {
if (createListing) this.addListing(mainDocumentPart, indent, false, false);
boolean hasValue = false;
List<Field> tempFields = fields.stream().sorted(Comparator.comparingInt(Field::getOrdinal)).collect(Collectors.toList());
List<Field> formats = tempFields.stream().filter(f -> {
try {
String fTemp = this.formatter(f);
return fTemp != null && !fTemp.isEmpty();
} catch (IOException e) {
logger.error(e.getMessage(), e);
}
return false;
}).collect(Collectors.toList());
for (Field field: tempFields) {
if (visibilityRuleService.isElementVisible(field.getId())) {
if (!createListing) {
try {
if (field.getValue() != null && !field.getValue().toString().isEmpty()) {
this.indent = indent;
XWPFParagraph paragraph = addParagraphContent(this.formatter(field), mainDocumentPart, field.getViewStyle().getRenderStyle().equals("richTextarea") ? ParagraphStyle.HTML : ParagraphStyle.TEXT, numId);
String format = this.formatter(field);
if(format != null && !format.isEmpty()){
if(format.charAt(0) == '['){
format = format.substring(1, format.length() - 1).replaceAll(",", ", ");
}
if(formats.size() > 1){
format = "\t• " + format;
}
}
XWPFParagraph paragraph = addParagraphContent(format, mainDocumentPart, field.getViewStyle().getRenderStyle().equals("richTextarea") ? ParagraphStyle.HTML : ParagraphStyle.TEXT, numId);
if (paragraph != null) {
CTDecimalNumber number = paragraph.getCTP().getPPr().getNumPr().addNewIlvl();
number.setVal(BigInteger.valueOf(indent));
@ -284,12 +319,20 @@ public class WordBuilder {
private String formatter(Field field) throws IOException {
String comboboxType = null;
if (field.getValue() == null) {
return null;
}
switch (field.getViewStyle().getRenderStyle()) {
case "researchers":
case "projects":
case "organizations":
case "externalDatasets":
case "dataRepositories":
case "pubRepositories":
case "journalRepositories":
case "taxonomies":
case "licenses":
case "publications":
case "registries":
case "services":
case "tags":
@ -320,7 +363,7 @@ public class WordBuilder {
for (Map<String, Object> map: mapList) {
for (Map.Entry<String, Object> entry : map.entrySet()) {
if (entry.getValue() != null && (entry.getKey().equals("label") || entry.getKey().equals("description") || entry.getKey().equals("name"))) {
sb.append(entry.getValue().toString());
sb.append(entry.getValue());
break;
}
}
@ -331,9 +374,9 @@ public class WordBuilder {
} else if (comboboxType.equals("wordlist")) {
WordListData wordListData = (WordListData) field.getData();
if (field.getValue() != null){
ComboBoxData<WordListData>.Option selectedOption = null;
ComboBoxData.Option selectedOption = null;
if (!wordListData.getOptions().isEmpty()) {
for (ComboBoxData<WordListData>.Option option : wordListData.getOptions()) {
for (ComboBoxData.Option option : wordListData.getOptions()) {
if (option.getValue().equals(field.getValue())) {
selectedOption = option;
}
@ -357,12 +400,15 @@ public class WordBuilder {
case "datepicker":
case "datePicker":{
Instant instant;
try {
instant = Instant.parse((String) field.getValue());
} catch (DateTimeParseException ex) {
instant = (Instant) DateTimeFormatter.ofPattern("yyyy-MM-dd").parse((String)field.getValue());
if (!((String)field.getValue()).isEmpty()) {
try {
instant = Instant.parse((String) field.getValue());
} catch (DateTimeParseException ex) {
instant = LocalDate.parse((String) field.getValue()).atStartOfDay().toInstant(ZoneOffset.UTC);
}
return field.getValue() != null ? DateTimeFormatter.ofPattern("yyyy-MM-dd").withZone(ZoneId.systemDefault()).format(instant) : "";
}
return field.getValue() != null ? DateTimeFormatter.ofPattern("yyyy-MM-dd").withZone(ZoneId.systemDefault()).format(instant) : "";
return (String) field.getValue();
}
case "freetext":
case "textarea":

23
dmp-backend/web/src/main/java/eu/eudat/logic/utilities/documents/xml/datasetProfileXml/ExportXmlBuilderDatasetProfile.java
View File

@ -120,6 +120,7 @@ public class ExportXmlBuilderDatasetProfile {
Element multiplicity = element.createElement("multiplicity");
multiplicity.setAttribute("max", "" + field.getMultiplicity().getMax());
multiplicity.setAttribute("min", "" + field.getMultiplicity().getMin());
multiplicity.setAttribute("placeholder", field.getMultiplicity().getPlaceholder());
composite.appendChild(multiplicity);
}
if (field.getTitle() != null && !field.getTitle().isEmpty()) {
@ -162,6 +163,11 @@ public class ExportXmlBuilderDatasetProfile {
numbering.setTextContent(field.getNumbering());
elementField.appendChild(numbering);
}
if (field.getRdaProperty() != null) {
Element rdaProperty = element.createElement("rdaProperty");
rdaProperty.setTextContent(field.getRdaProperty());
elementField.appendChild(rdaProperty);
}
if (field.getValidations() != null) {
Element validations = element.createElement("validations");
field.getValidations().forEach(validation -> {
@ -294,10 +300,27 @@ public class ExportXmlBuilderDatasetProfile {
dataOut.setAttribute("type", externalDatasetsData.getType());
break;
case DATA_REPOSITORIES:
case JOURNAL_REPOSITORIES:
case PUB_REPOSITORIES:
DataRepositoriesData dataRepositoriesData = (DataRepositoriesData) field.getData();
dataOut.setAttribute("label", dataRepositoriesData.getLabel());
dataOut.setAttribute("multiAutocomplete", dataRepositoriesData.getMultiAutoComplete().toString());
break;
case TAXONOMIES:
TaxonomiesData taxonomiesData = (TaxonomiesData) field.getData();
dataOut.setAttribute("label", taxonomiesData.getLabel());
dataOut.setAttribute("multiAutocomplete", taxonomiesData.getMultiAutoComplete().toString());
break;
case LICENSES:
LicensesData licensesData = (LicensesData) field.getData();
dataOut.setAttribute("label", licensesData.getLabel());
dataOut.setAttribute("multiAutocomplete", licensesData.getMultiAutoComplete().toString());
break;
case PUBLICATIONS:
PublicationsData publicationsData = (PublicationsData) field.getData();
dataOut.setAttribute("label", publicationsData.getLabel());
dataOut.setAttribute("multiAutocomplete", publicationsData.getMultiAutoComplete().toString());
break;
case ORGANIZATIONS:
OrganizationsData organizationsData = (OrganizationsData) field.getData();
dataOut.setAttribute("label", organizationsData.getLabel());

12
dmp-backend/web/src/main/java/eu/eudat/logic/utilities/documents/xml/datasetProfileXml/datasetProfileModel/Fields/Field.java
View File

@ -29,6 +29,8 @@ public class Field {
private Object data;
private String rdaProperty;
@XmlAttribute(name = "id")
public String getId() {
return id;
@ -101,6 +103,15 @@ public class Field {
this.data = data;
}
@XmlElement(name = "rdaProperty")
public String getRdaProperty() {
return rdaProperty;
}
public void setRdaProperty(String rdaProperty) {
this.rdaProperty = rdaProperty;
}
public eu.eudat.models.data.admin.components.datasetprofile.Field toAdminCompositeModelSection() {
eu.eudat.models.data.admin.components.datasetprofile.Field fieldEntity =new eu.eudat.models.data.admin.components.datasetprofile.Field();
@ -120,6 +131,7 @@ public class Field {
if (data != null) {
fieldEntity.setData(data.toMap((Element) this.data));
}
fieldEntity.setRdaCommonStandard(this.rdaProperty);
return fieldEntity;
}
}

11
dmp-backend/web/src/main/java/eu/eudat/logic/utilities/documents/xml/datasetProfileXml/datasetProfileModel/Multiplicity.java
View File

@ -8,6 +8,7 @@ import javax.xml.bind.annotation.XmlRootElement;
public class Multiplicity {
private int max;
private int min;
private String placeholder;
@XmlAttribute(name = "max")
public int getMax() {
@ -27,10 +28,20 @@ public class Multiplicity {
this.min = min;
}
@XmlAttribute(name = "placeholder")
public String getPlaceholder() {
return placeholder;
}
public void setPlaceholder(String placeholder) {
this.placeholder = placeholder;
}
public eu.eudat.models.data.components.commons.Multiplicity toAdminCompositeModelSection() {
eu.eudat.models.data.components.commons.Multiplicity multiplicityEntity = new eu.eudat.models.data.components.commons.Multiplicity();
multiplicityEntity.setMax(max);
multiplicityEntity.setMin(min);
multiplicityEntity.setPlaceholder(placeholder);
return multiplicityEntity;
}
}

10
dmp-backend/web/src/main/java/eu/eudat/logic/utilities/documents/xml/datasetProfileXml/datasetProfileModel/Section.java
View File

@ -18,6 +18,7 @@ public class Section {
private String extendedDescription;
private String title;
private List<Section> section;
private Boolean multiplicity;
@XmlAttribute(name = "id")
public String getId() {
@ -134,4 +135,13 @@ public class Section {
public void setSection(List<Section> section) {
this.section = section;
}
@XmlAttribute(name = "multiplicity")
public Boolean getMultiplicity() {
return multiplicity;
}
public void setMultiplicity(Boolean multiplicity) {
this.multiplicity = multiplicity;
}
}

11
dmp-backend/web/src/main/java/eu/eudat/logic/utilities/documents/xml/datasetProfileXml/datasetProfileModel/Sections.java
View File

@ -18,6 +18,7 @@ public class Sections {
private String title;
private List<Section> section;
private FieldSets fieldSets;
private Boolean multiplicity;
@XmlAttribute(name = "id")
public String getId() {
@ -100,6 +101,15 @@ public class Sections {
this.fieldSets = fieldSets;
}
@XmlAttribute(name = "multiplicity")
public Boolean getMultiplicity() {
return multiplicity;
}
public void setMultiplicity(Boolean multiplicity) {
this.multiplicity = multiplicity;
}
public eu.eudat.models.data.admin.components.datasetprofile.Section toAdminCompositeModelSection() {
eu.eudat.models.data.admin.components.datasetprofile.Section sectionEntity = new eu.eudat.models.data.admin.components.datasetprofile.Section();
List<eu.eudat.models.data.admin.components.datasetprofile.Section> sectionsListEntity = new LinkedList<>();
@ -118,6 +128,7 @@ public class Sections {
sectionEntity.setDescription(description);
sectionEntity.setPage(this.page);
sectionEntity.setFieldSets(toAdminCompositeModelSectionFieldSets());
sectionEntity.setMultiplicity(this.multiplicity);
sectionEntity.setSections(sectionsListEntity);

6
dmp-backend/web/src/main/java/eu/eudat/logic/utilities/json/JavaToJson.java
View File

@ -4,10 +4,10 @@ public class JavaToJson {
public static String objectStringToJson(String object) {
String result = object.replaceAll("=", "\":\"")
.replaceAll("\\{", "{\"")
//.replaceAll("\\{", "{\"")
.replaceAll(", ", "\", \"")
.replaceAll("}", "\"}" ).
replaceAll("}\", \"\\{", "}, {");
//.replaceAll("}", "\"}" ).
.replaceAll("}\", \"\\{", "}, {");
return result;
}
}

4
dmp-backend/web/src/main/java/eu/eudat/models/data/admin/components/datasetprofile/Field.java
View File

@ -13,7 +13,7 @@ import java.util.stream.Collectors;
public class Field implements ViewStyleDefinition<eu.eudat.models.data.entities.xmlmodels.datasetprofiledefinition.Field>, Comparable {
public enum ValidationType {
NONE((short) 0), REQUIRED((short) 1);
NONE((short) 0), REQUIRED((short) 1), URL((short) 2);
private short value;
private ValidationType(short value) {
@ -30,6 +30,8 @@ public class Field implements ViewStyleDefinition<eu.eudat.models.data.entities.
return NONE;
case 1:
return REQUIRED;
case 2:
return URL;
default:
return NONE;

12
dmp-backend/web/src/main/java/eu/eudat/models/data/admin/components/datasetprofile/Section.java
View File

@ -16,6 +16,7 @@ public class Section implements Comparable, ViewStyleDefinition<eu.eudat.models.
private String id;
private String title;
private String description;
private Boolean multiplicity;
public List<Section> getSections() {
return sections;
@ -81,11 +82,20 @@ public class Section implements Comparable, ViewStyleDefinition<eu.eudat.models.
this.ordinal = ordinal;
}
public Boolean getMultiplicity() {
return multiplicity;
}
public void setMultiplicity(Boolean multiplicity) {
this.multiplicity = multiplicity;
}
@Override
public eu.eudat.models.data.entities.xmlmodels.datasetprofiledefinition.Section toDatabaseDefinition(eu.eudat.models.data.entities.xmlmodels.datasetprofiledefinition.Section item) {
if (this.id == null || this.id.isEmpty()) this.id = "section_" + RandomStringUtils.random(5, true, true);
item.setDefaultVisibility(this.defaultVisibility);
item.setDescription(this.description);
item.setMultiplicity(this.multiplicity);
if (this.fieldSets != null)
item.setFieldSets(new ModelBuilder().toViewStyleDefinition(this.fieldSets, eu.eudat.models.data.entities.xmlmodels.datasetprofiledefinition.FieldSet.class));
item.setId(this.id);
@ -108,6 +118,7 @@ public class Section implements Comparable, ViewStyleDefinition<eu.eudat.models.
this.page = item.getPage();
this.sections = new ModelBuilder().fromViewStyleDefinition(item.getSections(), Section.class);
this.title = item.getTitle();
this.multiplicity = item.getMultiplicity();
}
@Override
@ -134,6 +145,7 @@ public class Section implements Comparable, ViewStyleDefinition<eu.eudat.models.
shortenSection.setId(this.id);
shortenSection.setTitle(this.title);
shortenSection.setDescription(this.description);
shortenSection.setMultiplicity(this.multiplicity);
return shortenSection;
}

7
dmp-backend/web/src/main/java/eu/eudat/models/data/components/commons/Multiplicity.java
View File

@ -4,6 +4,7 @@ public class Multiplicity {
private int min;
private int max;
private String placeholder;
public int getMin() {
return min;
@ -21,5 +22,11 @@ public class Multiplicity {
this.max = max;
}
public String getPlaceholder() {
return placeholder;
}
public void setPlaceholder(String placeholder) {
this.placeholder = placeholder;
}
}

5
dmp-backend/web/src/main/java/eu/eudat/models/data/components/commons/ViewStyle.java
View File

@ -32,6 +32,11 @@ public class ViewStyle {
DATE_PICKER("datePicker"),
EXTERNAL_DATASETS("externalDatasets"),
DATA_REPOSITORIES("dataRepositories"),
JOURNAL_REPOSITORIES("journalRepositories"),
PUB_REPOSITORIES("pubRepositories"),
LICENSES("licenses"),
TAXONOMIES("taxonomies"),
PUBLICATIONS("publications"),
REGISTRIES("registries"),
SERVICES("services"),
TAGS("tags"),

8
dmp-backend/web/src/main/java/eu/eudat/models/data/components/commons/datafield/AutoCompleteData.java
View File

@ -10,10 +10,10 @@ import java.util.List;
import java.util.Map;
public class AutoCompleteData extends ComboBoxData<AutoCompleteData> {
public class AutoCompleteSingleData {
public static class AutoCompleteSingleData {
private int autocompleteType;
private String url;
private Option autoCompleteOptions;
private ComboBoxData.Option autoCompleteOptions;
private String optionsRoot;
public int getAutocompleteType() {
@ -38,10 +38,10 @@ public class AutoCompleteData extends ComboBoxData<AutoCompleteData> {
this.url = url;
}
public Option getAutoCompleteOptions() {
public ComboBoxData.Option getAutoCompleteOptions() {
return autoCompleteOptions;
}
public void setAutoCompleteOptions(Option autoCompleteOptions) {
public void setAutoCompleteOptions(ComboBoxData.Option autoCompleteOptions) {
this.autoCompleteOptions = autoCompleteOptions;
}
}

4
dmp-backend/web/src/main/java/eu/eudat/models/data/components/commons/datafield/ComboBoxData.java
View File

@ -8,7 +8,7 @@ import java.util.HashMap;
import java.util.Map;
public abstract class ComboBoxData<T> extends FieldData<T> {
public class Option implements XmlSerializable<Option> {
public static class Option implements XmlSerializable<Option> {
private String label;
private String value;
private String source;
@ -54,7 +54,7 @@ public abstract class ComboBoxData<T> extends FieldData<T> {
}
@Override
public Option fromXml(Element item) {
public ComboBoxData.Option fromXml(Element item) {
this.label = item.getAttribute("label");
this.value = item.getAttribute("value");
this.source = item.getAttribute("source");

58
dmp-backend/web/src/main/java/eu/eudat/models/data/components/commons/datafield/LicensesData.java Normal file
View File

@ -0,0 +1,58 @@
package eu.eudat.models.data.components.commons.datafield;
import org.w3c.dom.Document;
import org.w3c.dom.Element;
import java.util.HashMap;
import java.util.Map;
public class LicensesData extends FieldData<LicensesData> {
private Boolean multiAutoComplete;
public Boolean getMultiAutoComplete() {
return multiAutoComplete;
}
public void setMultiAutoComplete(Boolean multiAutoComplete) {
this.multiAutoComplete = multiAutoComplete;
}
@Override
public LicensesData fromData(Object data) {
if (data != null) {
this.setLabel((String) ((Map<String, Object>) data).get("label"));
this.setMultiAutoComplete(((Map<String, Object>) data).get("multiAutoComplete") != null && !((Map<String, Object>) data).get("multiAutoComplete").toString().isEmpty()? Boolean.parseBoolean(((Map<String, Object>) data).get("multiAutoComplete").toString()) : false);
}
return this;
}
@Override
public Object toData() {
return null;
}
@Override
public Element toXml(Document doc) {
Element root = doc.createElement("data");
root.setAttribute("label", this.getLabel());
if (this.getMultiAutoComplete() != null) {
root.setAttribute("multiAutoComplete", this.getMultiAutoComplete().toString());
}
return root;
}
@Override
public LicensesData fromXml(Element item) {
this.setLabel(item != null ? item.getAttribute("label") : "");
this.setMultiAutoComplete(Boolean.parseBoolean(item.getAttribute("multiAutoComplete")));
return this;
}
@Override
public Map<String, Object> toMap(Element item) {
HashMap dataMap = new HashMap();
dataMap.put("label", item != null && item.getAttributes().getLength() > 0? item.getAttribute("label") : "");
dataMap.put("multiAutoComplete", item != null && item.getAttributes().getLength() > 0 ? item.getAttribute("multiAutocomplete") : false);
return dataMap;
}
}

58
dmp-backend/web/src/main/java/eu/eudat/models/data/components/commons/datafield/PublicationsData.java Normal file
View File

@ -0,0 +1,58 @@
package eu.eudat.models.data.components.commons.datafield;
import org.w3c.dom.Document;
import org.w3c.dom.Element;
import java.util.HashMap;
import java.util.Map;
public class PublicationsData extends FieldData<PublicationsData> {
private Boolean multiAutoComplete;
public Boolean getMultiAutoComplete() {
return multiAutoComplete;
}
public void setMultiAutoComplete(Boolean multiAutoComplete) {
this.multiAutoComplete = multiAutoComplete;
}
@Override
public PublicationsData fromData(Object data) {
if (data != null) {
this.setLabel((String) ((Map<String, Object>) data).get("label"));
this.setMultiAutoComplete(((Map<String, Object>) data).get("multiAutoComplete") != null && !((Map<String, Object>) data).get("multiAutoComplete").toString().isEmpty()? Boolean.parseBoolean(((Map<String, Object>) data).get("multiAutoComplete").toString()) : false);
}
return this;
}
@Override
public Object toData() {
return null;
}
@Override
public Element toXml(Document doc) {
Element root = doc.createElement("data");
root.setAttribute("label", this.getLabel());
if (this.getMultiAutoComplete() != null) {
root.setAttribute("multiAutoComplete", this.getMultiAutoComplete().toString());
}
return root;
}
@Override
public PublicationsData fromXml(Element item) {
this.setLabel(item != null ? item.getAttribute("label") : "");
this.setMultiAutoComplete(Boolean.parseBoolean(item.getAttribute("multiAutoComplete")));
return this;
}
@Override
public Map<String, Object> toMap(Element item) {
HashMap dataMap = new HashMap();
dataMap.put("label", item != null && item.getAttributes().getLength() > 0? item.getAttribute("label") : "");
dataMap.put("multiAutoComplete", item != null && item.getAttributes().getLength() > 0 ? item.getAttribute("multiAutocomplete") : false);
return dataMap;
}
}

58
dmp-backend/web/src/main/java/eu/eudat/models/data/components/commons/datafield/TaxonomiesData.java Normal file
View File

@ -0,0 +1,58 @@
package eu.eudat.models.data.components.commons.datafield;
import org.w3c.dom.Document;
import org.w3c.dom.Element;
import java.util.HashMap;
import java.util.Map;
public class TaxonomiesData extends FieldData<TaxonomiesData> {
private Boolean multiAutoComplete;
public Boolean getMultiAutoComplete() {
return multiAutoComplete;
}
public void setMultiAutoComplete(Boolean multiAutoComplete) {
this.multiAutoComplete = multiAutoComplete;
}
@Override
public TaxonomiesData fromData(Object data) {
if (data != null) {
this.setLabel((String) ((Map<String, Object>) data).get("label"));
this.setMultiAutoComplete(((Map<String, Object>) data).get("multiAutoComplete") != null && !((Map<String, Object>) data).get("multiAutoComplete").toString().isEmpty()? Boolean.parseBoolean(((Map<String, Object>) data).get("multiAutoComplete").toString()) : false);
}
return this;
}
@Override
public Object toData() {
return null;
}
@Override
public Element toXml(Document doc) {
Element root = doc.createElement("data");
root.setAttribute("label", this.getLabel());
if (this.getMultiAutoComplete() != null) {
root.setAttribute("multiAutoComplete", this.getMultiAutoComplete().toString());
}
return root;
}
@Override
public TaxonomiesData fromXml(Element item) {
this.setLabel(item != null ? item.getAttribute("label") : "");
this.setMultiAutoComplete(Boolean.parseBoolean(item.getAttribute("multiAutoComplete")));
return this;
}
@Override
public Map<String, Object> toMap(Element item) {
HashMap dataMap = new HashMap();
dataMap.put("label", item != null && item.getAttributes().getLength() > 0? item.getAttribute("label") : "");
dataMap.put("multiAutoComplete", item != null && item.getAttributes().getLength() > 0 ? item.getAttribute("multiAutocomplete") : false);
return dataMap;
}
}

36
dmp-backend/web/src/main/java/eu/eudat/models/data/dashboard/recent/model/RecentActivityModel.java
View File

@ -11,17 +11,13 @@ import java.util.List;
public abstract class RecentActivityModel<T extends DataEntity, S extends DataModel> implements DataModel<T, S> {
private String id;
private String title;
private String description;
private Date created;
private Date modified;
private int status;
private int version;
private String grant;
private String grantAbbreviation;
private String grantId;
private Date finalizedAt;
private Date publishedAt;
private DatasetProfileOverviewModel profile;
private int type;
private List<UserInfoListingModel> users;
private Boolean isPublic;
@ -42,14 +38,6 @@ public abstract class RecentActivityModel<T extends DataEntity, S extends DataMo
this.title = title;
}
public String getDescription() {
return description;
}
public void setDescription(String description) {
this.description = description;
}
public Date getCreated() {
return created;
}
@ -90,22 +78,6 @@ public abstract class RecentActivityModel<T extends DataEntity, S extends DataMo
this.grant = grant;
}
public String getGrantAbbreviation() {
return grantAbbreviation;
}
public void setGrantAbbreviation(String grantAbbreviation) {
this.grantAbbreviation = grantAbbreviation;
}
public String getGrantId() {
return grantId;
}
public void setGrantId(String grantId) {
this.grantId = grantId;
}
public Date getFinalizedAt() {
return finalizedAt;
}
@ -122,14 +94,6 @@ public abstract class RecentActivityModel<T extends DataEntity, S extends DataMo
this.publishedAt = publishedAt;
}
public DatasetProfileOverviewModel getProfile() {
return profile;
}
public void setProfile(DatasetProfileOverviewModel profile) {
this.profile = profile;
}
public int getType() {
return type;
}

42
dmp-backend/web/src/main/java/eu/eudat/models/data/dashboard/recent/model/RecentDatasetModel.java
View File

@ -1,10 +1,6 @@
package eu.eudat.models.data.dashboard.recent.model;
import eu.eudat.data.entities.Dataset;
import eu.eudat.logic.utilities.helpers.LabelBuilder;
import eu.eudat.models.data.dataset.DataRepository;
import eu.eudat.models.data.dataset.Service;
import eu.eudat.models.data.datasetprofile.DatasetProfileOverviewModel;
import eu.eudat.models.data.listingmodels.UserInfoListingModel;
import java.util.Date;
@ -13,9 +9,6 @@ import java.util.stream.Collectors;
public class RecentDatasetModel extends RecentActivityModel<Dataset, RecentDatasetModel> {
private String dmp;
private String dmpId;
private String dataRepositories;
private String registries;
private String services;
public String getDmp() {
return dmp;
@ -33,51 +26,20 @@ public class RecentDatasetModel extends RecentActivityModel<Dataset, RecentDatas
this.dmpId = dmpId;
}
public String getDataRepositories() {
return dataRepositories;
}
public void setDataRepositories(String dataRepositories) {
this.dataRepositories = dataRepositories;
}
public String getRegistries() {
return registries;
}
public void setRegistries(String registries) {
this.registries = registries;
}
public String getServices() {
return services;
}
public void setServices(String services) {
this.services = services;
}
@Override
public RecentActivityModel fromEntity(Dataset entity) {
this.setType(RecentActivityType.DATASET.getIndex());
this.setId(entity.getId().toString());
this.setTitle(entity.getLabel());
this.setDescription(entity.getDescription());
this.setCreated(entity.getCreated());
this.setModified(entity.getModified());
this.setStatus(entity.getStatus());
this.setVersion(entity.getDmp() != null ? entity.getDmp().getVersion(): 0);
this.setFinalizedAt(entity.getFinalizedAt());
this.setGrantAbbreviation(entity.getDmp() != null ? entity.getDmp().getGrant().getAbbreviation() : "");
this.setPublishedAt(entity.getDmp() != null ? entity.getDmp().getPublishedAt() : new Date());
this.setGrantId(entity.getDmp() != null ? entity.getDmp().getGrant().getId().toString() : "");
this.setProfile(entity.getProfile() != null ? new DatasetProfileOverviewModel().fromDataModel(entity.getProfile()): null);
this.setGrant(entity.getDmp() != null ? entity.getDmp().getGrant().getLabel() : "");
this.setDataRepositories(entity.getDatasetDataRepositories() != null && !entity.getDatasetDataRepositories().isEmpty()? LabelBuilder.getLabel(entity.getDatasetDataRepositories().stream().map(item -> new DataRepository().fromDataModel(item.getDataRepository())).collect(Collectors.toList())) : "");
this.setDmp( entity.getDmp() != null ? entity.getDmp().getLabel() : "");
this.setDmpId(entity.getDmp() != null ? entity.getDmp().getId().toString() : "");
this.setRegistries(LabelBuilder.getLabel(entity.getRegistries().stream().map(item -> new eu.eudat.models.data.dataset.Registry().fromDataModel(item)).collect(Collectors.toList())));
this.setServices(LabelBuilder.getLabel(entity.getServices().stream().map(item -> new Service().fromDataModel(item.getService())).collect(Collectors.toList())));
this.setPublic(entity.getDmp().isPublic());
this.setUsers(entity.getDmp().getUsers().stream().map(x -> new UserInfoListingModel().fromDataModel(x)).collect(Collectors.toList()));
return this;
@ -87,16 +49,12 @@ public class RecentDatasetModel extends RecentActivityModel<Dataset, RecentDatas
this.setType(RecentActivityType.DATASET.getIndex());
this.setId(entity.getId().toString());
this.setTitle(entity.getLabel());
this.setDescription(entity.getDescription());
this.setCreated(entity.getCreated());
this.setModified(entity.getModified());
this.setStatus(entity.getStatus());
this.setVersion(entity.getDmp() != null ? entity.getDmp().getVersion(): 0);
this.setFinalizedAt(entity.getFinalizedAt());
this.setGrantAbbreviation(entity.getDmp() != null ? entity.getDmp().getGrant().getAbbreviation() : "");
this.setPublishedAt(entity.getDmp() != null ? entity.getDmp().getPublishedAt() : new Date());
this.setGrantId(entity.getDmp() != null ? entity.getDmp().getGrant().getId().toString() : "");
this.setProfile(entity.getProfile() != null ? new DatasetProfileOverviewModel().fromDataModel(entity.getProfile()) : null);
this.setGrant(entity.getDmp() != null ? entity.getDmp().getGrant().getLabel() : "");
this.setDmp( entity.getDmp() != null ? entity.getDmp().getLabel() : "");
this.setDmpId(entity.getDmp() != null ? entity.getDmp().getId().toString() : "");

38
dmp-backend/web/src/main/java/eu/eudat/models/data/dashboard/recent/model/RecentDmpModel.java
View File

@ -1,9 +1,6 @@
package eu.eudat.models.data.dashboard.recent.model;
import eu.eudat.data.entities.DMP;
import eu.eudat.logic.utilities.helpers.LabelBuilder;
import eu.eudat.models.data.dmp.AssociatedProfile;
import eu.eudat.models.data.dmp.Organisation;
import eu.eudat.models.data.listingmodels.UserInfoListingModel;
import eu.eudat.models.data.urls.DatasetUrlListing;
@ -14,22 +11,10 @@ import java.util.UUID;
import java.util.stream.Collectors;
public class RecentDmpModel extends RecentActivityModel<DMP, RecentDmpModel> {
private String doi;
private Map<String, Object> extraProperties;
private List<DatasetUrlListing> datasets;
private List<AssociatedProfile> associatedProfiles;
private String organisations;
private UUID groupId;
public String getDoi() {
return doi;
}
public void setDoi(String doi) {
this.doi = doi;
}
public Map<String, Object> getExtraProperties() {
return extraProperties;
}
@ -46,22 +31,6 @@ public class RecentDmpModel extends RecentActivityModel<DMP, RecentDmpModel> {
this.datasets = datasets;
}
public List<AssociatedProfile> getAssociatedProfiles() {
return associatedProfiles;
}
public void setAssociatedProfiles(List<AssociatedProfile> associatedProfiles) {
this.associatedProfiles = associatedProfiles;
}
public String getOrganisations() {
return organisations;
}
public void setOrganisations(String organisations) {
this.organisations = organisations;
}
public UUID getGroupId() {
return groupId;
}
@ -76,22 +45,15 @@ public class RecentDmpModel extends RecentActivityModel<DMP, RecentDmpModel> {
this.setType(RecentActivityType.DMP.getIndex());
this.setId(entity.getId().toString());
this.setTitle(entity.getLabel());
this.setDescription(entity.getDescription());
this.setCreated(entity.getCreated());
this.setModified(entity.getModified());
this.setStatus(entity.getStatus());
this.setVersion(entity.getVersion());
//this.datasets = entity.getDataset().stream().map(dataset -> new RecentDatasetModel().fromDmpEntity(dataset)).collect(Collectors.toList());
this.datasets = entity.getDataset().stream().map(dataset -> new DatasetUrlListing().fromDataModel(dataset)).collect(Collectors.toList());
this.associatedProfiles = entity.getAssociatedDmps().stream().map(item -> new AssociatedProfile().fromData(item)).collect(Collectors.toList());
this.setFinalizedAt(entity.getFinalizedAt());
this.setGrant(entity.getGrant().getLabel());
this.setGrantAbbreviation(entity.getGrant().getAbbreviation());
this.setGrantId(entity.getGrant().getId().toString());
this.groupId = entity.getGroupId();
this.setPublic(entity.isPublic());
this.organisations = LabelBuilder.getLabel(entity.getOrganisations().stream().map(item -> new Organisation().fromDataModel(item)).collect(Collectors.toList()));
//if (entity.getProfile() != null) this.setProfile(new DatasetProfileOverviewModel().fromDataModel(entity.getProfile()));
this.setPublishedAt(entity.getPublishedAt());
this.setUsers(entity.getUsers().stream().map(x -> new UserInfoListingModel().fromDataModel(x)).collect(Collectors.toList()));
return this;

7
dmp-backend/web/src/main/java/eu/eudat/models/data/datasetprofile/DatasetProfileOverviewModel.java
View File

@ -31,8 +31,11 @@ public class DatasetProfileOverviewModel implements DataModel<DatasetProfile, Da
}
@Override
public DatasetProfile toDataModel() throws Exception {
return null;
public DatasetProfile toDataModel() {
DatasetProfile entity = new DatasetProfile();
entity.setId(this.getId());
entity.setLabel(this.getLabel());
return entity;
}
@Override

42
dmp-backend/web/src/main/java/eu/eudat/models/data/datasetprofile/RenderStyle.java Normal file
View File

@ -0,0 +1,42 @@
package eu.eudat.models.data.datasetprofile;
public enum RenderStyle {
COMBO_BOX("combobox"),
INTERNAL_DMP_ENTITIES("internalDmpEntities"),
BOOLEAN_DECISION("booleanDecision"),
RADIO_BOX("radiobox"),
CHECKBOX("checkBox"),
FREETEXT("freetext"),
TEXTAREA("textarea"),
RICH_TEXTAREA("richTextarea"),
DATE_PICKER("datePicker"),
EXTERNAL_DATASETS("externalDatasets"),
DATASET_REPOSITORIES("dataRepositories"),
REGISTRIES("registries"),
SERVICES("services"),
TAGS("tags"),
RESEARCHERS("researchers"),
ORGANIZATIONS("organizations"),
DATASET_IDENTIFIER("datasetIdentifier"),
CURRENCY("currency"),
VALIDATION("validation");
private final String name;
RenderStyle(String name) {
this.name = name;
}
public String getName() {
return name;
}
public static RenderStyle fromValue(String value) {
for(RenderStyle renderStyle: RenderStyle.values()) {
if (renderStyle.getName().equals(value)) {
return renderStyle;
}
}
throw new IllegalArgumentException("RenderStyle [" + value + "] is not available");
}
}

1
dmp-backend/web/src/main/java/eu/eudat/models/data/datasetwizard/DatasetWizardModel.java
View File

@ -297,6 +297,7 @@ public class DatasetWizardModel implements DataModel<Dataset, DatasetWizardModel
return entity;
}
@Override
public String getHint() {
return "datasetWizardModel";

2
dmp-backend/web/src/main/java/eu/eudat/models/data/entities/xmlmodels/datasetprofiledefinition/FieldSet.java
View File

@ -121,6 +121,7 @@ public class FieldSet implements DatabaseViewStyleDefinition, XmlSerializable<Fi
Element multiplicity = doc.createElement("multiplicity");
multiplicity.setAttribute("min", "" + this.multiplicity.getMin());
multiplicity.setAttribute("max", "" + this.multiplicity.getMax());
multiplicity.setAttribute("placeholder", this.multiplicity.getPlaceholder());
Element commentField = doc.createElement("commentField");
commentField.setAttribute("hasCommentField", "" + this.hasCommentField);
@ -183,6 +184,7 @@ public class FieldSet implements DatabaseViewStyleDefinition, XmlSerializable<Fi
this.multiplicity.setMin(Integer.parseInt(multiplicity.getAttribute("min")));
this.multiplicity.setMax(Integer.parseInt(multiplicity.getAttribute("max")));
this.multiplicity.setPlaceholder(multiplicity.getAttribute("placeholder"));
return this;
}

11
dmp-backend/web/src/main/java/eu/eudat/models/data/entities/xmlmodels/datasetprofiledefinition/Section.java
View File

@ -21,6 +21,7 @@ public class Section implements DatabaseViewStyleDefinition, XmlSerializable<Sec
private String extendedDescription;
private List<Section> sections;
private List<FieldSet> fieldSets;
private Boolean multiplicity;
public String getId() {
return id;
@ -102,6 +103,14 @@ public class Section implements DatabaseViewStyleDefinition, XmlSerializable<Sec
this.numbering = numbering;
}
public Boolean getMultiplicity() {
return multiplicity;
}
public void setMultiplicity(Boolean multiplicity) {
this.multiplicity = multiplicity;
}
@Override
public Element toXml(Document doc) {
Element rootElement = doc.createElement("section");
@ -109,6 +118,7 @@ public class Section implements DatabaseViewStyleDefinition, XmlSerializable<Sec
rootElement.setAttribute("ordinal", "" + this.ordinal);
rootElement.setAttribute("defaultVisibility", "" + this.defaultVisibility);
rootElement.setAttribute("page", "" + this.page);
rootElement.setAttribute("multiplicity", (this.multiplicity != null ? "" + this.multiplicity : "false"));
Element description = doc.createElement("description");
description.setTextContent(this.description);
@ -155,6 +165,7 @@ public class Section implements DatabaseViewStyleDefinition, XmlSerializable<Sec
this.ordinal = Integer.parseInt(element.getAttribute("ordinal"));
this.defaultVisibility = Boolean.valueOf(element.getAttribute("defaultVisibility"));
this.page = element.getAttribute("page");
this.multiplicity = element.hasAttribute("multiplicity") ? Boolean.valueOf(element.getAttribute("multiplicity")) : false;
Element description = XmlBuilder.getNodeFromListByTagName(element.getChildNodes(), "description");
if (description != null) this.description = description.getTextContent();

93
dmp-backend/web/src/main/java/eu/eudat/models/data/listingmodels/DataManagementPlanListingModel.java
View File

@ -1,20 +1,12 @@
package eu.eudat.models.data.listingmodels;
import eu.eudat.data.entities.DMP;
import eu.eudat.data.entities.DatasetProfile;
import eu.eudat.logic.utilities.builders.XmlBuilder;
import eu.eudat.data.entities.Grant;
import eu.eudat.models.DataModel;
import eu.eudat.models.data.dmp.AssociatedProfile;
import eu.eudat.models.data.dmp.Organisation;
import eu.eudat.logic.utilities.helpers.LabelBuilder;
import eu.eudat.models.data.urls.DatasetUrlListing;
import org.w3c.dom.Document;
import org.w3c.dom.Element;
import org.w3c.dom.Node;
import org.w3c.dom.NodeList;
import java.util.Date;
import java.util.LinkedList;
import java.util.LinkedHashSet;
import java.util.List;
import java.util.UUID;
import java.util.stream.Collectors;
@ -24,19 +16,13 @@ public class DataManagementPlanListingModel implements DataModel<DMP, DataManage
private String id;
private String label;
private String grant;
// private String profile;
private Date creationTime;
private Date modifiedTime;
//private String organisations;
private int version;
private int status;
private UUID groupId;
private List<DatasetUrlListing> datasets;
// private List<AssociatedProfile> associatedProfiles;
private List<UserInfoListingModel> users;
private String description;
// private String grantAbbreviation;
// private String grantId;
private Date finalizedAt;
private Boolean isPublic;
private Date publishedAt;
@ -63,13 +49,6 @@ public class DataManagementPlanListingModel implements DataModel<DMP, DataManage
this.grant = grant;
}
/* public String getProfile() {
return profile;
}
public void setProfile(String profile) {
this.profile = profile;
}*/
public Date getCreationTime() {
return creationTime;
}
@ -84,13 +63,6 @@ public class DataManagementPlanListingModel implements DataModel<DMP, DataManage
this.modifiedTime = modifiedTime;
}
/*public String getOrganisations() {
return organisations;
}
public void setOrganisations(String organisations) {
this.organisations = organisations;
}*/
public int getVersion() {
return version;
}
@ -119,13 +91,6 @@ public class DataManagementPlanListingModel implements DataModel<DMP, DataManage
this.status = status;
}
/*public List<AssociatedProfile> getAssociatedProfiles() {
return associatedProfiles;
}
public void setAssociatedProfiles(List<AssociatedProfile> associatedProfiles) {
this.associatedProfiles = associatedProfiles;
}*/
public List<UserInfoListingModel> getUsers() {
return users;
}
@ -133,27 +98,6 @@ public class DataManagementPlanListingModel implements DataModel<DMP, DataManage
this.users = users;
}
public String getDescription() {
return description;
}
public void setDescription(String description) {
this.description = description;
}
/*public String getGrantAbbreviation() {
return grantAbbreviation;
}
public void setGrantAbbreviation(String grantAbbreviation) {
this.grantAbbreviation = grantAbbreviation;
}*/
/*public String getGrantId() {
return grantId;
}
public void setGrantId(String grantId) {
this.grantId = grantId;
}*/
public Date getFinalizedAt() {
return finalizedAt;
}
@ -188,7 +132,6 @@ public class DataManagementPlanListingModel implements DataModel<DMP, DataManage
this.label = entity.getLabel();
this.groupId = entity.getGroupId();
this.creationTime = entity.getCreated();
// this.associatedProfiles = entity.getAssociatedDmps().stream().map(item -> new AssociatedProfile().fromData(item)).collect(Collectors.toList());
return this;
}
@ -205,33 +148,37 @@ public class DataManagementPlanListingModel implements DataModel<DMP, DataManage
this.status = entity.getStatus();
this.version = entity.getVersion();
this.grant = entity.getGrant().getLabel();
/*if (entity.getProfile() != null) this.profile = entity.getProfile().getLabel(); */
this.creationTime = entity.getCreated();
this.modifiedTime = entity.getModified();
// this.organisations = LabelBuilder.getLabel(entity.getOrganisations().stream().map(item -> new Organisation().fromDataModel(item)).collect(Collectors.toList()));
this.datasets = entity.getDataset().stream().map(x-> new DatasetUrlListing().fromDataModel(x)).collect(Collectors.toList());
this.users = entity.getUsers().stream().map(x -> new UserInfoListingModel().fromDataModel(x)).collect(Collectors.toList());
this.description = entity.getDescription();
// this.grantAbbreviation = entity.getGrant().getAbbreviation();
// this.grantId = entity.getGrant().getId().toString();
this.finalizedAt = entity.getFinalizedAt();
this.isPublic = entity.isPublic();
this.publishedAt = entity.getPublishedAt();
/*if (entity.getAssociatedDmps() != null && !entity.getAssociatedDmps().isEmpty()) {
this.associatedProfiles = new LinkedList<>();
for (DatasetProfile datasetProfile: entity.getAssociatedDmps()) {
AssociatedProfile associatedProfile = new AssociatedProfile().fromData(datasetProfile);
this.associatedProfiles.add(associatedProfile);
}
}*/
return this;
}
@Override
public DMP toDataModel() {
return null;
DMP entity = new DMP();
entity.setId(UUID.fromString(this.getId()));
entity.setLabel(this.getLabel());
entity.setGroupId(this.getGroupId());
entity.setStatus(Integer.valueOf(this.getStatus()).shortValue());
entity.setCreated(this.getCreationTime());
entity.setFinalizedAt(this.getFinalizedAt());
entity.setModified(this.getModifiedTime());
entity.setPublic(this.getPublic());
entity.setPublishedAt(this.getPublishedAt());
entity.setVersion(this.getVersion());
entity.setDataset(this.getDatasets().stream().map(DatasetUrlListing::toDataModel).collect(Collectors.toCollection(LinkedHashSet::new)));
Grant grant = new Grant();
grant.setLabel(this.getGrant());
entity.setGrant(grant);
entity.setUsers(this.getUsers().stream().map(UserInfoListingModel::toDataModel).collect(Collectors.toSet()));
return entity;
}
@Override

93
dmp-backend/web/src/main/java/eu/eudat/models/data/listingmodels/DatasetListingModel.java
View File

@ -1,15 +1,14 @@
package eu.eudat.models.data.listingmodels;
import eu.eudat.data.entities.DMP;
import eu.eudat.data.entities.Dataset;
import eu.eudat.data.entities.Grant;
import eu.eudat.models.DataModel;
import eu.eudat.models.data.dataset.DataRepository;
import eu.eudat.models.data.dataset.Service;
import eu.eudat.logic.utilities.helpers.LabelBuilder;
import eu.eudat.models.data.datasetprofile.DatasetProfileOverviewModel;
import java.util.ArrayList;
import java.util.Date;
import java.util.List;
import java.util.UUID;
import java.util.stream.Collectors;
@ -19,22 +18,15 @@ public class DatasetListingModel implements DataModel<Dataset, DatasetListingMod
private String grant;
private String dmp;
private String dmpId;
private DatasetProfileOverviewModel profile;
private String dataRepositories;
private String registries;
private String services;
private int status;
private Date created;
private Date modified;
private String description;
private String grantAbbreviation;
private String grantId;
private Date finalizedAt;
private Date dmpPublishedAt;
private int version;
private List<UserInfoListingModel> users;
private Boolean isPublic;
private Boolean isProfileLatestVersion;
public String getId() {
return id;
@ -71,35 +63,6 @@ public class DatasetListingModel implements DataModel<Dataset, DatasetListingMod
this.dmpId = dmpId;
}
public DatasetProfileOverviewModel getProfile() {
return profile;
}
public void setProfile(DatasetProfileOverviewModel profile) {
this.profile = profile;
}
public String getDataRepositories() {
return dataRepositories;
}
public void setDataRepositories(String dataRepositories) {
this.dataRepositories = dataRepositories;
}
public String getRegistries() {
return registries;
}
public void setRegistries(String registries) {
this.registries = registries;
}
public String getServices() {
return services;
}
public void setServices(String services) {
this.services = services;
}
public int getStatus() {
return status;
}
@ -128,20 +91,6 @@ public class DatasetListingModel implements DataModel<Dataset, DatasetListingMod
this.description = description;
}
public String getGrantAbbreviation() {
return grantAbbreviation;
}
public void setGrantAbbreviation(String grantAbbreviation) {
this.grantAbbreviation = grantAbbreviation;
}
public String getGrantId() {
return grantId;
}
public void setGrantId(String grantId) {
this.grantId = grantId;
}
public Date getFinalizedAt() {
return finalizedAt;
}
@ -179,14 +128,6 @@ public class DatasetListingModel implements DataModel<Dataset, DatasetListingMod
isPublic = aPublic;
}
public Boolean getProfileLatestVersion() {
return isProfileLatestVersion;
}
public void setProfileLatestVersion(Boolean profileLatestVersion) {
isProfileLatestVersion = profileLatestVersion;
}
@Override
public DatasetListingModel fromDataModel(Dataset entity) {
this.id = entity.getId() != null ? entity.getId().toString() : "";
@ -196,14 +137,8 @@ public class DatasetListingModel implements DataModel<Dataset, DatasetListingMod
this.grant = entity.getDmp() != null ? entity.getDmp().getGrant().getLabel() : "";
this.dmp = entity.getDmp() != null ? entity.getDmp().getLabel() : "";
this.dmpId = entity.getDmp() != null ? entity.getDmp().getId().toString() : "";
this.profile = entity.getProfile() != null ? new DatasetProfileOverviewModel().fromDataModel(entity.getProfile()) : null;
this.description = entity.getDescription();
this.status = entity.getStatus();
//this.grantAbbreviation = entity.getDmp() != null ? entity.getDmp().getGrant().getAbbreviation() : "";
// this.grantId = entity.getDmp() != null ? entity.getDmp().getGrant().getId().toString() : "";
//this.registries = LabelBuilder.getLabel(entity.getRegistries().stream().map(item -> new eu.eudat.models.data.dataset.Registry().fromDataModel(item)).collect(Collectors.toList()));
// this.dataRepositories = LabelBuilder.getLabel(entity.getDatasetDataRepositories().stream().map(item -> new DataRepository().fromDataModel(item.getDataRepository())).collect(Collectors.toList()));
//this.services = LabelBuilder.getLabel(entity.getServices().stream().map(item -> new Service().fromDataModel(item.getService())).collect(Collectors.toList()));
if (entity.getFinalizedAt() == null && entity.getStatus() == Dataset.Status.FINALISED.getValue()) {
this.finalizedAt = entity.getDmp().getFinalizedAt();
} else {
@ -218,7 +153,27 @@ public class DatasetListingModel implements DataModel<Dataset, DatasetListingMod
@Override
public Dataset toDataModel() {
return null;
Dataset entity = new Dataset();
entity.setId(UUID.fromString(this.getId()));
entity.setLabel(this.getLabel());
entity.setCreated(this.getCreated());
entity.setModified(this.getModified());
entity.setDescription(this.getDescription());
entity.setFinalizedAt(this.getFinalizedAt());
entity.setStatus(Integer.valueOf(this.getStatus()).shortValue());
DMP dmp = new DMP();
Grant grant = new Grant();
grant.setLabel(this.getGrant());
dmp.setGrant(grant);
dmp.setLabel(this.getDmp());
dmp.setId(UUID.fromString(this.getDmpId()));
dmp.setPublishedAt(this.getDmpPublishedAt());
dmp.setVersion(this.getVersion());
dmp.setUsers(this.getUsers().stream().map(UserInfoListingModel::toDataModel).collect(Collectors.toSet()));
dmp.setPublic(this.getPublic());
dmp.setFinalizedAt(this.getFinalizedAt());
entity.setDmp(dmp);
return entity;
}
@Override

11
dmp-backend/web/src/main/java/eu/eudat/models/data/listingmodels/UserInfoListingModel.java
View File

@ -51,8 +51,15 @@ public class UserInfoListingModel implements DataModel<UserDMP, UserInfoListingM
}
@Override
public UserDMP toDataModel() throws Exception {
return null;
public UserDMP toDataModel() {
UserDMP entity = new UserDMP();
entity.setId(this.getId());
entity.setRole(this.getRole());
UserInfo userInfo = new UserInfo();
userInfo.setName(this.getName());
userInfo.setEmail(this.getEmail());
entity.setUser(userInfo);
return entity;
}
@Override

31
dmp-backend/web/src/main/java/eu/eudat/models/data/prefilling/Prefilling.java Normal file
View File

@ -0,0 +1,31 @@
package eu.eudat.models.data.prefilling;
public class Prefilling {
private String pid;
private String name;
private String tag;
public String getPid() {
return pid;
}
public void setPid(String pid) {
this.pid = pid;
}
public String getName() {
return name;
}
public void setName(String name) {
this.name = name;
}
public String getTag() {
return tag;
}
public void setTag(String tag) {
this.tag = tag;
}
}

157
dmp-backend/web/src/main/java/eu/eudat/models/data/publication/PublicationModel.java Normal file
View File

@ -0,0 +1,157 @@
package eu.eudat.models.data.publication;
import eu.eudat.data.entities.DataRepository;
import eu.eudat.data.entities.UserInfo;
import eu.eudat.models.DataModel;
import java.util.ArrayList;
import java.util.Date;
import java.util.List;
import java.util.UUID;
public class PublicationModel implements DataModel<DataRepository, PublicationModel> {
private UUID id;
private List<String> titles;
private List<String> ids;
private String name;
private String pid;
private String abbreviation;
private String uri;
private Date created;
private Date modified;
private String tag; // Api fetching the data
private String source; // Actual harvested source
public UUID getId() {
return id;
}
public void setId(UUID id) {
this.id = id;
}
public List<String> getTitles() {
return titles;
}
public void setTitles(List<String> titles) {
this.titles = titles;
}
public List<String> getIds() {
return ids;
}
public void setIds(List<String> ids) {
this.ids = ids;
}
public String getAbbreviation() {
return abbreviation;
}
public void setAbbreviation(String abbreviation) {
this.abbreviation = abbreviation;
}
public String getUri() {
return uri;
}
public void setUri(String uri) {
this.uri = uri;
}
public Date getCreated() {
return created;
}
public void setCreated(Date created) {
this.created = created;
}
public Date getModified() {
return modified;
}
public void setModified(Date modified) {
this.modified = modified;
}
public String getTag() {
return tag;
}
public void setTag(String tag) {
this.tag = tag;
}
public String getSource() {
return source;
}
public void setSource(String source) {
this.source = source;
}
public String getPid() {
return pid;
}
public void setPid(String pid) {
this.pid = pid;
}
public String getName() {
return name;
}
public void setName(String name) {
this.name = name;
}
@Override
public PublicationModel fromDataModel(DataRepository entity) {
this.setAbbreviation(entity.getAbbreviation());
this.setName(entity.getLabel());
this.setTitles(new ArrayList<>());
this.getTitles().add(entity.getLabel());
this.setUri(entity.getUri());
this.setId(entity.getId());
this.setPid(entity.getReference());
String source1 = entity.getReference().substring(0, entity.getReference().indexOf(":"));
if (source1.equals("dmp")) {
this.source = "Internal";
} else {
this.source = source1;
}
return this;
}
@Override
public DataRepository toDataModel() throws Exception {
DataRepository dataRepository = new DataRepository();
dataRepository.setId(this.id != null ? this.id : UUID.randomUUID());
dataRepository.setAbbreviation(this.abbreviation);
dataRepository.setCreated(this.created != null ? this.created : new Date());
dataRepository.setModified(new Date());
dataRepository.setLabel(this.name);
if (this.source != null) {
if (this.source.equals("Internal") || this.source.equals(this.id.toString().substring(0, this.source.length()))) {
dataRepository.setReference(this.id.toString());
} else {
dataRepository.setReference(this.source + ":" + dataRepository.getId());
}
} else {
dataRepository.setReference("dmp:" + dataRepository.getId());
}
dataRepository.setUri(this.uri);
dataRepository.setStatus((short) 0);
dataRepository.setCreationUser(new UserInfo());
return dataRepository;
}
@Override
public String getHint() {
return null;
}
}

134
dmp-backend/web/src/main/java/eu/eudat/models/data/taxonomy/TaxonomyModel.java Normal file
View File

@ -0,0 +1,134 @@
package eu.eudat.models.data.taxonomy;
import eu.eudat.data.entities.DataRepository;
import eu.eudat.data.entities.UserInfo;
import eu.eudat.models.DataModel;
import java.util.Date;
import java.util.UUID;
public class TaxonomyModel implements DataModel<DataRepository, TaxonomyModel> {
private UUID id;
private String name;
private String pid;
private String abbreviation;
private String uri;
private Date created;
private Date modified;
private String tag; // Api fetching the data
private String source; // Actual harvested source
public UUID getId() {
return id;
}
public void setId(UUID id) {
this.id = id;
}
public String getName() {
return name;
}
public void setName(String name) {
this.name = name;
}
public String getAbbreviation() {
return abbreviation;
}
public void setAbbreviation(String abbreviation) {
this.abbreviation = abbreviation;
}
public String getUri() {
return uri;
}
public void setUri(String uri) {
this.uri = uri;
}
public Date getCreated() {
return created;
}
public void setCreated(Date created) {
this.created = created;
}
public Date getModified() {
return modified;
}
public void setModified(Date modified) {
this.modified = modified;
}
public String getTag() {
return tag;
}
public void setTag(String tag) {
this.tag = tag;
}
public String getSource() {
return source;
}
public void setSource(String source) {
this.source = source;
}
public String getPid() {
return pid;
}
public void setPid(String pid) {
this.pid = pid;
}
@Override
public TaxonomyModel fromDataModel(DataRepository entity) {
this.setAbbreviation(entity.getAbbreviation());
this.setName(entity.getLabel());
this.setUri(entity.getUri());
this.setId(entity.getId());
this.setPid(entity.getReference());
String source1 = entity.getReference().substring(0, entity.getReference().indexOf(":"));
if (source1.equals("dmp")) {
this.source = "Internal";
} else {
this.source = source1;
}
return this;
}
@Override
public DataRepository toDataModel() throws Exception {
DataRepository dataRepository = new DataRepository();
dataRepository.setId(this.id != null ? this.id : UUID.randomUUID());
dataRepository.setAbbreviation(this.abbreviation);
dataRepository.setCreated(this.created != null ? this.created : new Date());
dataRepository.setModified(new Date());
dataRepository.setLabel(this.name);
if (this.source != null) {
if (this.source.equals("Internal") || this.source.equals(this.id.toString().substring(0, this.source.length()))) {
dataRepository.setReference(this.id.toString());
} else {
dataRepository.setReference(this.source + ":" + dataRepository.getId());
}
} else {
dataRepository.setReference("dmp:" + dataRepository.getId());
}
dataRepository.setUri(this.uri);
dataRepository.setStatus((short) 0);
dataRepository.setCreationUser(new UserInfo());
return dataRepository;
}
@Override
public String getHint() {
return null;
}
}

9
dmp-backend/web/src/main/java/eu/eudat/models/data/urls/DatasetUrlListing.java
View File

@ -2,6 +2,8 @@ package eu.eudat.models.data.urls;
import eu.eudat.data.entities.Dataset;
import java.util.UUID;
/**
* Created by ikalyvas on 7/23/2018.
*/
@ -14,8 +16,11 @@ public class DatasetUrlListing extends UrlListing<Dataset, DatasetUrlListing> {
}
@Override
public Dataset toDataModel() throws Exception {
return null;
public Dataset toDataModel() {
Dataset entity = new Dataset();
entity.setId(UUID.fromString(this.getUrl()));
entity.setLabel(this.getLabel());
return entity;
}
@Override

11
dmp-backend/web/src/main/java/eu/eudat/models/data/user/components/datasetprofile/Section.java
View File

@ -19,6 +19,7 @@ public class Section implements Comparable, ViewStyleDefinition<eu.eudat.models.
private String id;
private String title;
private String description;
private Boolean multiplicity;
public List<Section> getSections() {
Collections.sort(sections);
@ -94,6 +95,14 @@ public class Section implements Comparable, ViewStyleDefinition<eu.eudat.models.
this.numbering = numbering;
}
public Boolean getMultiplicity() {
return multiplicity;
}
public void setMultiplicity(Boolean multiplicity) {
this.multiplicity = multiplicity;
}
@Override
public eu.eudat.models.data.entities.xmlmodels.datasetprofiledefinition.Section toDatabaseDefinition(eu.eudat.models.data.entities.xmlmodels.datasetprofiledefinition.Section item) {
item.setDefaultVisibility(this.defaultVisibility);
@ -106,6 +115,7 @@ public class Section implements Comparable, ViewStyleDefinition<eu.eudat.models.
if (this.sections != null)
item.setSections(new ModelBuilder().toViewStyleDefinition(this.sections, eu.eudat.models.data.entities.xmlmodels.datasetprofiledefinition.Section.class));
item.setTitle(this.title);
item.setMultiplicity(this.multiplicity);
return item;
}
@ -120,6 +130,7 @@ public class Section implements Comparable, ViewStyleDefinition<eu.eudat.models.
this.page = item.getPage();
this.sections = new ModelBuilder().fromViewStyleDefinition(item.getSections(), Section.class);
this.title = item.getTitle();
this.multiplicity = item.getMultiplicity();
}
@Override

4
dmp-backend/web/src/main/java/eu/eudat/models/rda/Contact.java
View File

@ -133,12 +133,12 @@ public class Contact implements Serializable
this.name = name;
}
@JsonAnyGetter
@JsonProperty("additional_properties")
public Map<String, Object> getAdditionalProperties() {
return this.additionalProperties;
}
@JsonAnySetter
@JsonProperty("additional_properties")
public void setAdditionalProperty(String name, Object value) {
this.additionalProperties.put(name, value);
}

4
dmp-backend/web/src/main/java/eu/eudat/models/rda/ContactId.java
View File

@ -100,12 +100,12 @@ public class ContactId implements Serializable
this.type = type;
}
@JsonAnyGetter
@JsonProperty("additional_properties")
public Map<String, Object> getAdditionalProperties() {
return this.additionalProperties;
}
@JsonAnySetter
@JsonProperty("additional_properties")
public void setAdditionalProperty(String name, Object value) {
this.additionalProperties.put(name, value);
}

4
dmp-backend/web/src/main/java/eu/eudat/models/rda/Contributor.java
View File

@ -168,12 +168,12 @@ public class Contributor implements Serializable
this.role = role;
}
@JsonAnyGetter
@JsonProperty("additional_properties")
public Map<String, Object> getAdditionalProperties() {
return this.additionalProperties;
}
@JsonAnySetter
@JsonProperty("additional_properties")
public void setAdditionalProperty(String name, Object value) {
this.additionalProperties.put(name, value);
}

4
dmp-backend/web/src/main/java/eu/eudat/models/rda/ContributorId.java
View File

@ -101,12 +101,12 @@ public class ContributorId implements Serializable
this.type = type;
}
@JsonAnyGetter
@JsonProperty("additional_properties")
public Map<String, Object> getAdditionalProperties() {
return this.additionalProperties;
}
@JsonAnySetter
@JsonProperty("additional_properties")
public void setAdditionalProperty(String name, Object value) {
this.additionalProperties.put(name, value);
}

4
dmp-backend/web/src/main/java/eu/eudat/models/rda/Cost.java
View File

@ -162,12 +162,12 @@ public class Cost implements Serializable
this.value = value;
}
@JsonAnyGetter
@JsonProperty("additional_properties")
public Map<String, Object> getAdditionalProperties() {
return this.additionalProperties;
}
@JsonAnySetter
@JsonProperty("additional_properties")
public void setAdditionalProperty(String name, Object value) {
this.additionalProperties.put(name, value);
}

4
dmp-backend/web/src/main/java/eu/eudat/models/rda/DatasetId.java
View File

@ -109,12 +109,12 @@ public class DatasetId implements Serializable
this.type = type;
}
@JsonAnyGetter
@JsonProperty("additional_properties")
public Map<String, Object> getAdditionalProperties() {
return this.additionalProperties;
}
@JsonAnySetter
@JsonProperty("additional_properties")
public void setAdditionalProperty(String name, Object value) {
this.additionalProperties.put(name, value);
}

4
dmp-backend/web/src/main/java/eu/eudat/models/rda/DmpId.java
View File

@ -101,12 +101,12 @@ public class DmpId implements Serializable
this.type = type;
}
@JsonAnyGetter
@JsonProperty("additional_properties")
public Map<String, Object> getAdditionalProperties() {
return this.additionalProperties;
}
@JsonAnySetter
@JsonProperty("additional_properties")
public void setAdditionalProperty(String name, Object value) {
this.additionalProperties.put(name, value);
}

4
dmp-backend/web/src/main/java/eu/eudat/models/rda/FunderId.java
View File

@ -101,12 +101,12 @@ public class FunderId implements Serializable
this.type = type;
}
@JsonAnyGetter
@JsonProperty("additional_properties")
public Map<String, Object> getAdditionalProperties() {
return this.additionalProperties;
}
@JsonAnySetter
@JsonProperty("additional_properties")
public void setAdditionalProperty(String name, Object value) {
this.additionalProperties.put(name, value);
}

4
dmp-backend/web/src/main/java/eu/eudat/models/rda/Funding.java
View File

@ -133,12 +133,12 @@ public class Funding implements Serializable
this.grantId = grantId;
}
@JsonAnyGetter
@JsonProperty("additional_properties")
public Map<String, Object> getAdditionalProperties() {
return this.additionalProperties;
}
@JsonAnySetter
@JsonProperty("additional_properties")
public void setAdditionalProperty(String name, Object value) {
this.additionalProperties.put(name, value);
}

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