Add RDA Import
This commit is contained in:
parent
646de5ccfb
commit
7a0e9132d0
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@ -53,6 +53,9 @@ import java.util.List;
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import java.util.Map;
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import java.util.Map;
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import java.util.UUID;
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import java.util.UUID;
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import static org.springframework.http.MediaType.APPLICATION_ATOM_XML;
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import static org.springframework.http.MediaType.APPLICATION_JSON;
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@RestController
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@RestController
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@CrossOrigin
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@CrossOrigin
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@ -224,8 +227,12 @@ public class DMPs extends BaseController {
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}
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}
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@RequestMapping(method = RequestMethod.POST, value = {"/upload"})
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@RequestMapping(method = RequestMethod.POST, value = {"/upload"})
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public ResponseEntity<ResponseItem> dmpXmlUpload(@RequestParam("file") MultipartFile[] files, Principal principal) throws Exception {
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public ResponseEntity<ResponseItem> dmpUpload(@RequestParam("file") MultipartFile[] files, Principal principal) throws Exception {
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if (files[0].getContentType().equals(APPLICATION_JSON.toString())) {
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this.dataManagementPlanManager.createFromRDA(files, principal);
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} else if (files[0].getContentType().equals(APPLICATION_ATOM_XML.toString())) {
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this.dataManagementPlanManager.createDmpFromXml(this.getApiContext(), files, principal);
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this.dataManagementPlanManager.createDmpFromXml(this.getApiContext(), files, principal);
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}
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return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<List>()
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return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<List>()
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.status(ApiMessageCode.SUCCESS_MESSAGE));
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.status(ApiMessageCode.SUCCESS_MESSAGE));
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}
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}
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@ -131,6 +131,13 @@ public class DataManagementPlanManager {
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if (fieldsGroup.equals("listing")) {
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if (fieldsGroup.equals("listing")) {
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itemsFuture = pagedItems.withHint(HintedModelFactory.getHint(DataManagementPlanListingModel.class))
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itemsFuture = pagedItems.withHint(HintedModelFactory.getHint(DataManagementPlanListingModel.class))
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.selectAsync(item -> {
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.selectAsync(item -> {
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if (item.getUsers().stream().noneMatch(userDMP -> userDMP.getRole().equals(UserDMP.UserDMPRoles.OWNER.getValue()))) {
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for (UserDMP userDMP: item.getUsers()) {
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userDMP.setRole(UserDMP.UserDMPRoles.OWNER.getValue());
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databaseRepository.getUserDmpDao().createOrUpdate(userDMP);
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break;
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}
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}
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item.setDataset(
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item.setDataset(
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item.getDataset().stream()
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item.getDataset().stream()
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.filter(dataset -> !dataset.getStatus().equals(Dataset.Status.DELETED.getValue()) && !dataset.getStatus().equals(Dataset.Status.CANCELED.getValue())).collect(Collectors.toList()).stream()
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.filter(dataset -> !dataset.getStatus().equals(Dataset.Status.DELETED.getValue()) && !dataset.getStatus().equals(Dataset.Status.CANCELED.getValue())).collect(Collectors.toList()).stream()
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@ -1329,6 +1336,34 @@ public class DataManagementPlanManager {
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return dataManagementPlans;
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return dataManagementPlans;
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}
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}
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public List<DMP> createFromRDA(MultipartFile[] files, Principal principal) throws IOException {
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if (principal.getId() == null) {
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throw new UnauthorisedException("No user is logged in");
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}
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List<DMP> result = new ArrayList<>();
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for (MultipartFile file: files) {
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DMP dmp = rdaManager.convertToEntity(new String(file.getBytes(), "UTF-8"));
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UserInfo me = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().find(principal.getId());
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dmp.setModified(new Date());
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dmp.setCreator(me);
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dmp.setVersion(0);
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dmp.setStatus((short)0);
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dmp.setGroupId(UUID.randomUUID());
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databaseRepository.getDmpDao().createOrUpdate(dmp);
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assignUser(dmp, me);
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dmp.getDataset().forEach(dataset -> {
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dataset.setStatus(Dataset.Status.SAVED.getValue());
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dataset.setCreated(new Date());
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dataset.setModified(new Date());
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dataset.setDmp(dmp);
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databaseRepository.getDatasetDao().createOrUpdate(dataset);
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});
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result.add(dmp);
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}
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return result;
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}
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public DataTableData<DatasetProfileListingModel> getDatasetProfilesUsedByDMP(DatasetProfileTableRequestItem datasetProfileTableRequestItem, Principal principal) {
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public DataTableData<DatasetProfileListingModel> getDatasetProfilesUsedByDMP(DatasetProfileTableRequestItem datasetProfileTableRequestItem, Principal principal) {
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datasetProfileTableRequestItem.getCriteria().setFilter(DatasetProfileCriteria.DatasetProfileFilter.DMPs.getValue());
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datasetProfileTableRequestItem.getCriteria().setFilter(DatasetProfileCriteria.DatasetProfileFilter.DMPs.getValue());
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datasetProfileTableRequestItem.getCriteria().setUserId(principal.getId());
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datasetProfileTableRequestItem.getCriteria().setUserId(principal.getId());
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@ -10,6 +10,7 @@ import org.springframework.beans.factory.annotation.Autowired;
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import org.springframework.stereotype.Component;
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import org.springframework.stereotype.Component;
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import javax.transaction.Transactional;
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import javax.transaction.Transactional;
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import java.io.IOException;
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import java.text.SimpleDateFormat;
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import java.text.SimpleDateFormat;
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@Component
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@Component
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@ -35,4 +36,12 @@ public class RDAManager {
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return result;
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return result;
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}
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}
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public DMP convertToEntity(String json) throws IOException {
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ObjectMapper mapper = new ObjectMapper();
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mapper.setDateFormat(new SimpleDateFormat("yyyy-MM-dd'T'HH:mm:ss Z"));
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Dmp rda = mapper.readValue(json, Dmp.class);
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return dmpRDAMapper.toEntity(rda);
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}
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}
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}
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@ -38,7 +38,8 @@ import com.fasterxml.jackson.annotation.JsonValue;
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"sensitive_data",
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"sensitive_data",
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"technical_resource",
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"technical_resource",
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"title",
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"title",
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"type"
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"type",
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"additional_properties"
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})
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})
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public class Dataset implements Serializable
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public class Dataset implements Serializable
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{
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{
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@ -182,7 +183,7 @@ public class Dataset implements Serializable
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@JsonProperty("type")
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@JsonProperty("type")
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@JsonPropertyDescription("If appropriate, type according to: DataCite and/or COAR dictionary. Otherwise use the common name for the type, e.g. raw data, software, survey, etc. https://schema.datacite.org/meta/kernel-4.1/doc/DataCite-MetadataKernel_v4.1.pdf http://vocabularies.coar-repositories.org/pubby/resource_type.html")
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@JsonPropertyDescription("If appropriate, type according to: DataCite and/or COAR dictionary. Otherwise use the common name for the type, e.g. raw data, software, survey, etc. https://schema.datacite.org/meta/kernel-4.1/doc/DataCite-MetadataKernel_v4.1.pdf http://vocabularies.coar-repositories.org/pubby/resource_type.html")
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private String type;
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private String type;
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@JsonIgnore
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@JsonProperty("additional_properties")
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private Map<String, Object> additionalProperties = new HashMap<String, Object>();
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private Map<String, Object> additionalProperties = new HashMap<String, Object>();
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private final static long serialVersionUID = -6931119120629009399L;
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private final static long serialVersionUID = -6931119120629009399L;
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@ -524,12 +525,12 @@ public class Dataset implements Serializable
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this.type = type;
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this.type = type;
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}
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}
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@JsonAnyGetter
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@JsonProperty("additional_properties")
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public Map<String, Object> getAdditionalProperties() {
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public Map<String, Object> getAdditionalProperties() {
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return this.additionalProperties;
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return this.additionalProperties;
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}
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}
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@JsonAnySetter
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@JsonProperty("additional_properties")
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public void setAdditionalProperty(String name, Object value) {
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public void setAdditionalProperty(String name, Object value) {
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this.additionalProperties.put(name, value);
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this.additionalProperties.put(name, value);
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}
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}
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@ -34,7 +34,8 @@ import com.fasterxml.jackson.annotation.JsonValue;
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"format",
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"format",
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"host",
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"host",
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"license",
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"license",
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"title"
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"title",
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"additional_properties"
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})
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})
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public class Distribution implements Serializable
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public class Distribution implements Serializable
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{
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{
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@ -131,7 +132,7 @@ public class Distribution implements Serializable
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@JsonProperty("title")
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@JsonProperty("title")
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@JsonPropertyDescription("Title is a property in both Dataset and Distribution, in compliance with W3C DCAT. In some cases these might be identical, but in most cases the Dataset represents a more abstract concept, while the distribution can point to a specific file.")
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@JsonPropertyDescription("Title is a property in both Dataset and Distribution, in compliance with W3C DCAT. In some cases these might be identical, but in most cases the Dataset represents a more abstract concept, while the distribution can point to a specific file.")
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private String title;
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private String title;
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@JsonIgnore
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@JsonProperty("additional_properties")
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private Map<String, Object> additionalProperties = new HashMap<String, Object>();
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private Map<String, Object> additionalProperties = new HashMap<String, Object>();
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private final static long serialVersionUID = -6018365280419917902L;
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private final static long serialVersionUID = -6018365280419917902L;
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@ -359,12 +360,12 @@ public class Distribution implements Serializable
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this.title = title;
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this.title = title;
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}
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}
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@JsonAnyGetter
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@JsonProperty("additional_properties")
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public Map<String, Object> getAdditionalProperties() {
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public Map<String, Object> getAdditionalProperties() {
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return this.additionalProperties;
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return this.additionalProperties;
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}
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}
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@JsonAnySetter
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@JsonProperty("additional_properties")
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public void setAdditionalProperty(String name, Object value) {
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public void setAdditionalProperty(String name, Object value) {
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this.additionalProperties.put(name, value);
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this.additionalProperties.put(name, value);
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}
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}
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@ -39,7 +39,8 @@ import com.fasterxml.jackson.annotation.JsonValue;
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"language",
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"language",
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"modified",
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"modified",
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"project",
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"project",
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"title"
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"title",
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"additional_properties"
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})
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})
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public class Dmp implements Serializable
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public class Dmp implements Serializable
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{
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{
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@ -173,7 +174,7 @@ public class Dmp implements Serializable
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@JsonProperty("title")
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@JsonProperty("title")
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@JsonPropertyDescription("Title of a DMP")
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@JsonPropertyDescription("Title of a DMP")
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private String title;
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private String title;
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@JsonIgnore
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@JsonProperty("additional_properties")
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private Map<String, Object> additionalProperties = new HashMap<String, Object>();
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private Map<String, Object> additionalProperties = new HashMap<String, Object>();
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private final static long serialVersionUID = 4599713332472772292L;
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private final static long serialVersionUID = 4599713332472772292L;
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@ -499,12 +500,12 @@ public class Dmp implements Serializable
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this.title = title;
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this.title = title;
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}
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}
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@JsonAnyGetter
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@JsonProperty("additional_properties")
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public Map<String, Object> getAdditionalProperties() {
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public Map<String, Object> getAdditionalProperties() {
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return this.additionalProperties;
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return this.additionalProperties;
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}
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}
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@JsonAnySetter
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@JsonProperty("additional_properties")
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public void setAdditionalProperty(String name, Object value) {
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public void setAdditionalProperty(String name, Object value) {
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this.additionalProperties.put(name, value);
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this.additionalProperties.put(name, value);
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}
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}
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@ -25,7 +25,8 @@ import com.fasterxml.jackson.annotation.JsonValue;
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@JsonPropertyOrder({
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@JsonPropertyOrder({
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"description",
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"description",
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"language",
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"language",
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"metadata_standard_id"
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"metadata_standard_id",
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"additional_properties"
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})
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})
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public class Metadatum implements Serializable
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public class Metadatum implements Serializable
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{
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{
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@ -58,7 +59,7 @@ public class Metadatum implements Serializable
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*/
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*/
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@JsonProperty("metadata_standard_id")
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@JsonProperty("metadata_standard_id")
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private MetadataStandardId metadataStandardId;
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private MetadataStandardId metadataStandardId;
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@JsonIgnore
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@JsonProperty("additional_properties")
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private Map<String, Object> additionalProperties = new HashMap<String, Object>();
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private Map<String, Object> additionalProperties = new HashMap<String, Object>();
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private final static long serialVersionUID = 6511312853153406190L;
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private final static long serialVersionUID = 6511312853153406190L;
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@ -132,12 +133,12 @@ public class Metadatum implements Serializable
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this.metadataStandardId = metadataStandardId;
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this.metadataStandardId = metadataStandardId;
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}
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}
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@JsonAnyGetter
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@JsonProperty("additional_properties")
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public Map<String, Object> getAdditionalProperties() {
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public Map<String, Object> getAdditionalProperties() {
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return this.additionalProperties;
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return this.additionalProperties;
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}
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}
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@JsonAnySetter
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@JsonProperty("additional_properties")
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public void setAdditionalProperty(String name, Object value) {
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public void setAdditionalProperty(String name, Object value) {
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this.additionalProperties.put(name, value);
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this.additionalProperties.put(name, value);
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}
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}
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@ -22,7 +22,8 @@ import com.fasterxml.jackson.annotation.JsonPropertyOrder;
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@JsonInclude(JsonInclude.Include.NON_NULL)
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@JsonInclude(JsonInclude.Include.NON_NULL)
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@JsonPropertyOrder({
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@JsonPropertyOrder({
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"description",
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"description",
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"title"
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"title",
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"additional_properties"
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})
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})
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public class SecurityAndPrivacy implements Serializable
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public class SecurityAndPrivacy implements Serializable
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{
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{
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@ -46,7 +47,7 @@ public class SecurityAndPrivacy implements Serializable
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@JsonProperty("title")
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@JsonProperty("title")
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@JsonPropertyDescription("Title")
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@JsonPropertyDescription("Title")
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private String title;
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private String title;
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@JsonIgnore
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@JsonProperty("additional_properties")
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private Map<String, Object> additionalProperties = new HashMap<String, Object>();
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private Map<String, Object> additionalProperties = new HashMap<String, Object>();
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private final static long serialVersionUID = 7863747935827682977L;
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private final static long serialVersionUID = 7863747935827682977L;
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@ -96,12 +97,12 @@ public class SecurityAndPrivacy implements Serializable
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this.title = title;
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this.title = title;
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}
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}
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@JsonAnyGetter
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@JsonProperty("additional_properties")
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public Map<String, Object> getAdditionalProperties() {
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public Map<String, Object> getAdditionalProperties() {
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return this.additionalProperties;
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return this.additionalProperties;
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}
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}
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@JsonAnySetter
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@JsonProperty("additional_properties")
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public void setAdditionalProperty(String name, Object value) {
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public void setAdditionalProperty(String name, Object value) {
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this.additionalProperties.put(name, value);
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this.additionalProperties.put(name, value);
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}
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}
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@ -22,7 +22,8 @@ import com.fasterxml.jackson.annotation.JsonPropertyOrder;
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@JsonInclude(JsonInclude.Include.NON_NULL)
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@JsonInclude(JsonInclude.Include.NON_NULL)
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@JsonPropertyOrder({
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@JsonPropertyOrder({
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"description",
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"description",
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"name"
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"name",
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"additional_properties"
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})
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})
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public class TechnicalResource implements Serializable
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public class TechnicalResource implements Serializable
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{
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{
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@ -46,7 +47,7 @@ public class TechnicalResource implements Serializable
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@JsonProperty("name")
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@JsonProperty("name")
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@JsonPropertyDescription("Name of the technical resource")
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@JsonPropertyDescription("Name of the technical resource")
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private String name;
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private String name;
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@JsonIgnore
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@JsonProperty("additional_properties")
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private Map<String, Object> additionalProperties = new HashMap<String, Object>();
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private Map<String, Object> additionalProperties = new HashMap<String, Object>();
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private final static long serialVersionUID = -7451757227129483110L;
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private final static long serialVersionUID = -7451757227129483110L;
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@ -96,12 +97,12 @@ public class TechnicalResource implements Serializable
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this.name = name;
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this.name = name;
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}
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}
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@JsonAnyGetter
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@JsonProperty("additional_properties")
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public Map<String, Object> getAdditionalProperties() {
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public Map<String, Object> getAdditionalProperties() {
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return this.additionalProperties;
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return this.additionalProperties;
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}
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}
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@JsonAnySetter
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@JsonProperty("additional_properties")
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public void setAdditionalProperty(String name, Object value) {
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public void setAdditionalProperty(String name, Object value) {
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this.additionalProperties.put(name, value);
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this.additionalProperties.put(name, value);
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}
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}
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@ -12,4 +12,8 @@ public class ContactIdRDAMapper {
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rda.setType(ContactId.Type.OTHER);
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rda.setType(ContactId.Type.OTHER);
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return rda;
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return rda;
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}
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}
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public static UUID toEntity(ContactId rda) {
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return UUID.fromString(rda.getIdentifier());
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}
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}
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}
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@ -13,4 +13,12 @@ public class ContactRDAMapper {
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rda.setContactId(ContactIdRDAMapper.toRDA(creator.getId()));
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rda.setContactId(ContactIdRDAMapper.toRDA(creator.getId()));
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return rda;
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return rda;
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}
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}
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public static UserInfo toEntity(Contact rda) {
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UserInfo entity = new UserInfo();
|
||||||
|
entity.setId(ContactIdRDAMapper.toEntity(rda.getContactId()));
|
||||||
|
entity.setName(rda.getName());
|
||||||
|
entity.setEmail(rda.getMbox());
|
||||||
|
return entity;
|
||||||
|
}
|
||||||
}
|
}
|
||||||
|
|
|
@ -2,28 +2,34 @@ package eu.eudat.models.rda.mapper;
|
||||||
|
|
||||||
import com.fasterxml.jackson.databind.JsonNode;
|
import com.fasterxml.jackson.databind.JsonNode;
|
||||||
import com.fasterxml.jackson.databind.ObjectMapper;
|
import com.fasterxml.jackson.databind.ObjectMapper;
|
||||||
|
import eu.eudat.data.entities.DatasetProfile;
|
||||||
import eu.eudat.logic.managers.DatasetManager;
|
import eu.eudat.logic.managers.DatasetManager;
|
||||||
|
import eu.eudat.logic.services.ApiContext;
|
||||||
import eu.eudat.logic.utilities.json.JsonSearcher;
|
import eu.eudat.logic.utilities.json.JsonSearcher;
|
||||||
import eu.eudat.models.data.datasetwizard.DatasetWizardModel;
|
import eu.eudat.models.data.datasetwizard.DatasetWizardModel;
|
||||||
import eu.eudat.models.rda.Dataset;
|
import eu.eudat.models.rda.Dataset;
|
||||||
|
import org.json.JSONObject;
|
||||||
import org.slf4j.Logger;
|
import org.slf4j.Logger;
|
||||||
import org.slf4j.LoggerFactory;
|
import org.slf4j.LoggerFactory;
|
||||||
import org.springframework.beans.factory.annotation.Autowired;
|
import org.springframework.beans.factory.annotation.Autowired;
|
||||||
import org.springframework.stereotype.Component;
|
import org.springframework.stereotype.Component;
|
||||||
|
|
||||||
import javax.transaction.Transactional;
|
import javax.transaction.Transactional;
|
||||||
import java.util.List;
|
import java.util.*;
|
||||||
import java.util.stream.Collectors;
|
import java.util.stream.Collectors;
|
||||||
|
import java.util.stream.Stream;
|
||||||
|
|
||||||
@Component
|
@Component
|
||||||
public class DatasetRDAMapper {
|
public class DatasetRDAMapper {
|
||||||
private static final Logger logger = LoggerFactory.getLogger(DatasetRDAMapper.class);
|
private static final Logger logger = LoggerFactory.getLogger(DatasetRDAMapper.class);
|
||||||
|
|
||||||
private DatasetManager datasetManager;
|
private DatasetManager datasetManager;
|
||||||
|
private ApiContext apiContext;
|
||||||
|
|
||||||
@Autowired
|
@Autowired
|
||||||
public DatasetRDAMapper(DatasetManager datasetManager) {
|
public DatasetRDAMapper(DatasetManager datasetManager, ApiContext apiContext) {
|
||||||
this.datasetManager = datasetManager;
|
this.datasetManager = datasetManager;
|
||||||
|
this.apiContext = apiContext;
|
||||||
}
|
}
|
||||||
|
|
||||||
@Transactional
|
@Transactional
|
||||||
|
@ -32,9 +38,10 @@ public class DatasetRDAMapper {
|
||||||
rda.setDatasetId(DatasetIdRDAMapper.toRDA(dataset.getId()));
|
rda.setDatasetId(DatasetIdRDAMapper.toRDA(dataset.getId()));
|
||||||
rda.setTitle(dataset.getLabel());
|
rda.setTitle(dataset.getLabel());
|
||||||
rda.setDescription(dataset.getDescription());
|
rda.setDescription(dataset.getDescription());
|
||||||
// rda.setAdditionalProperty("template", dataset.getProfile().getId());
|
rda.setAdditionalProperty("template", dataset.getProfile().getId());
|
||||||
try {
|
try {
|
||||||
|
JSONObject jObject = new JSONObject(dataset.getProperties());
|
||||||
|
Map<String, Object> templateIdsToValues = jObject.toMap();
|
||||||
DatasetWizardModel datasetWizardModel = new DatasetWizardModel().fromDataModel(dataset);
|
DatasetWizardModel datasetWizardModel = new DatasetWizardModel().fromDataModel(dataset);
|
||||||
datasetWizardModel.setDatasetProfileDefinition(datasetManager.getPagedProfile(datasetWizardModel, dataset));
|
datasetWizardModel.setDatasetProfileDefinition(datasetManager.getPagedProfile(datasetWizardModel, dataset));
|
||||||
ObjectMapper mapper = new ObjectMapper();
|
ObjectMapper mapper = new ObjectMapper();
|
||||||
|
@ -55,6 +62,9 @@ public class DatasetRDAMapper {
|
||||||
List<JsonNode> qaNodes = JsonSearcher.findNodes(datasetDescriptionObj, "rdaProperty", "dataset.data_quality_assurance");
|
List<JsonNode> qaNodes = JsonSearcher.findNodes(datasetDescriptionObj, "rdaProperty", "dataset.data_quality_assurance");
|
||||||
if (!qaNodes.isEmpty()) {
|
if (!qaNodes.isEmpty()) {
|
||||||
rda.setDataQualityAssurance(qaNodes.stream().map(qaNode -> qaNode.get("value").asText()).collect(Collectors.toList()));
|
rda.setDataQualityAssurance(qaNodes.stream().map(qaNode -> qaNode.get("value").asText()).collect(Collectors.toList()));
|
||||||
|
for (int i = 0; i < qaNodes.size(); i++) {
|
||||||
|
rda.setAdditionalProperty("qa" + (i + 1), qaNodes.get(i).get("id").asText());
|
||||||
|
}
|
||||||
}
|
}
|
||||||
List<JsonNode> preservationNodes = JsonSearcher.findNodes(datasetDescriptionObj, "rdaProperty", "dataset.preservation_statement");
|
List<JsonNode> preservationNodes = JsonSearcher.findNodes(datasetDescriptionObj, "rdaProperty", "dataset.preservation_statement");
|
||||||
if (!preservationNodes.isEmpty()) {
|
if (!preservationNodes.isEmpty()) {
|
||||||
|
@ -67,6 +77,9 @@ public class DatasetRDAMapper {
|
||||||
List<JsonNode> keywordNodes = JsonSearcher.findNodes(datasetDescriptionObj, "rdaProperty", "dataset.keyword");
|
List<JsonNode> keywordNodes = JsonSearcher.findNodes(datasetDescriptionObj, "rdaProperty", "dataset.keyword");
|
||||||
if (!keywordNodes.isEmpty()) {
|
if (!keywordNodes.isEmpty()) {
|
||||||
rda.setKeyword(keywordNodes.stream().map(keywordNode -> keywordNode.get("value").asText()).collect(Collectors.toList()));
|
rda.setKeyword(keywordNodes.stream().map(keywordNode -> keywordNode.get("value").asText()).collect(Collectors.toList()));
|
||||||
|
for (int i = 0; i < keywordNodes.size(); i++) {
|
||||||
|
rda.setAdditionalProperty("keyword" + (i + 1), keywordNodes.get(i).get("id").asText());
|
||||||
|
}
|
||||||
}
|
}
|
||||||
List<JsonNode> personalDataNodes = JsonSearcher.findNodes(datasetDescriptionObj, "rdaProperty", "dataset.personal_data");
|
List<JsonNode> personalDataNodes = JsonSearcher.findNodes(datasetDescriptionObj, "rdaProperty", "dataset.personal_data");
|
||||||
if (!personalDataNodes.isEmpty()) {
|
if (!personalDataNodes.isEmpty()) {
|
||||||
|
@ -84,6 +97,14 @@ public class DatasetRDAMapper {
|
||||||
if (!technicalResourceNodes.isEmpty()) {
|
if (!technicalResourceNodes.isEmpty()) {
|
||||||
rda.setTechnicalResource(TechnicalResourceRDAMapper.toRDAList(technicalResourceNodes));
|
rda.setTechnicalResource(TechnicalResourceRDAMapper.toRDAList(technicalResourceNodes));
|
||||||
}
|
}
|
||||||
|
List<JsonNode> foundNodes = Stream.of(typeNodes, languageNodes, metadataNodes, qaNodes, preservationNodes, distributionNodes,
|
||||||
|
keywordNodes, personalDataNodes, securityAndPrivacyNodes, sensitiveDataNodes, technicalResourceNodes).flatMap(Collection::stream).collect(Collectors.toList());
|
||||||
|
templateIdsToValues.entrySet().forEach(entry -> {
|
||||||
|
boolean isFound = foundNodes.stream().anyMatch(node -> node.get("id").asText().equals(entry.getKey()));
|
||||||
|
if (!isFound && entry.getValue() != null && !entry.getValue().toString().isEmpty()) {
|
||||||
|
rda.setAdditionalProperty(entry.getKey(), entry.getValue());
|
||||||
|
}
|
||||||
|
});
|
||||||
|
|
||||||
|
|
||||||
} catch (Exception e) {
|
} catch (Exception e) {
|
||||||
|
@ -93,4 +114,87 @@ public class DatasetRDAMapper {
|
||||||
|
|
||||||
return rda;
|
return rda;
|
||||||
}
|
}
|
||||||
|
|
||||||
|
|
||||||
|
public eu.eudat.data.entities.Dataset toEntity(Dataset rda) {
|
||||||
|
eu.eudat.data.entities.Dataset entity = new eu.eudat.data.entities.Dataset();
|
||||||
|
entity.setLabel(rda.getTitle());
|
||||||
|
entity.setDescription(rda.getDescription());
|
||||||
|
try {
|
||||||
|
DatasetProfile profile = apiContext.getOperationsContext().getDatabaseRepository().getDatasetProfileDao().find(UUID.fromString(rda.getAdditionalProperties().get("template").toString()));
|
||||||
|
entity.setProfile(profile);
|
||||||
|
}catch(Exception e) {
|
||||||
|
logger.warn(e.getMessage(), e);
|
||||||
|
}
|
||||||
|
try {
|
||||||
|
Map<String, Object> properties = new HashMap<>();
|
||||||
|
DatasetWizardModel datasetWizardModel = new DatasetWizardModel();
|
||||||
|
datasetWizardModel.setProfile(entity.getProfile().getId());
|
||||||
|
datasetWizardModel.setDatasetProfileDefinition(datasetManager.getPagedProfile(datasetWizardModel, entity));
|
||||||
|
ObjectMapper mapper = new ObjectMapper();
|
||||||
|
String datasetDescriptionJson = mapper.writeValueAsString(datasetWizardModel.getDatasetProfileDefinition());
|
||||||
|
JsonNode datasetDescriptionObj = mapper.readTree(datasetDescriptionJson);
|
||||||
|
|
||||||
|
List<JsonNode> typeNodes = JsonSearcher.findNodes(datasetDescriptionObj, "rdaProperty", "dataset.type");
|
||||||
|
if (!typeNodes.isEmpty()) {
|
||||||
|
properties.put(typeNodes.get(0).get("id").asText(), rda.getType());
|
||||||
|
}
|
||||||
|
|
||||||
|
List<JsonNode> languageNodes = JsonSearcher.findNodes(datasetDescriptionObj, "rdaProperty", "dataset.language");
|
||||||
|
if (!languageNodes.isEmpty()) {
|
||||||
|
properties.put(languageNodes.get(0).get("id").asText(), rda.getLanguage().value());
|
||||||
|
}
|
||||||
|
|
||||||
|
if (rda.getMetadata() != null) {
|
||||||
|
properties.putAll(MetadataRDAMapper.toProperties(rda.getMetadata()));
|
||||||
|
}
|
||||||
|
|
||||||
|
List <String> qaIds = rda.getAdditionalProperties().entrySet().stream().filter(entry -> entry.getKey().startsWith("qa")).map(entry -> entry.getValue().toString()).collect(Collectors.toList());
|
||||||
|
for (int i = 0; i < qaIds.size(); i++) {
|
||||||
|
properties.put(qaIds.get(i), rda.getDataQualityAssurance().get(i));
|
||||||
|
}
|
||||||
|
|
||||||
|
List<JsonNode> preservationNodes = JsonSearcher.findNodes(datasetDescriptionObj, "rdaProperty", "dataset.preservation_statement");
|
||||||
|
if (!preservationNodes.isEmpty()) {
|
||||||
|
properties.put(preservationNodes.get(0).get("id").asText(), rda.getPreservationStatement());
|
||||||
|
}
|
||||||
|
|
||||||
|
if (rda.getDistribution() != null) {
|
||||||
|
properties.putAll(DistributionRDAMapper.toProperties(rda.getDistribution()));
|
||||||
|
}
|
||||||
|
|
||||||
|
List <String> keywordIds = rda.getAdditionalProperties().entrySet().stream().filter(entry -> entry.getKey().startsWith("keyword")).map(entry -> entry.getValue().toString()).collect(Collectors.toList());
|
||||||
|
for (int i = 0; i < keywordIds.size(); i++) {
|
||||||
|
properties.put(keywordIds.get(i), rda.getKeyword().get(i));
|
||||||
|
}
|
||||||
|
|
||||||
|
List<JsonNode> personalDataNodes = JsonSearcher.findNodes(datasetDescriptionObj, "rdaProperty", "dataset.personal_data");
|
||||||
|
if (!personalDataNodes.isEmpty()) {
|
||||||
|
properties.put(personalDataNodes.get(0).get("id").asText(), rda.getPersonalData().value());
|
||||||
|
}
|
||||||
|
|
||||||
|
if (rda.getSecurityAndPrivacy() != null) {
|
||||||
|
properties.putAll(SecurityAndPrivacyRDAMapper.toProperties(rda.getSecurityAndPrivacy()));
|
||||||
|
}
|
||||||
|
|
||||||
|
List<JsonNode> sensitiveDataNodes = JsonSearcher.findNodes(datasetDescriptionObj, "rdaProperty", "dataset.sensitive_data");
|
||||||
|
if (!sensitiveDataNodes.isEmpty()) {
|
||||||
|
properties.put(sensitiveDataNodes.get(0).get("id").asText(), rda.getSensitiveData().value());
|
||||||
|
}
|
||||||
|
|
||||||
|
if (rda.getTechnicalResource() != null) {
|
||||||
|
properties.putAll(TechnicalResourceRDAMapper.toProperties(rda.getTechnicalResource()));
|
||||||
|
}
|
||||||
|
|
||||||
|
rda.getAdditionalProperties().entrySet().stream()
|
||||||
|
.filter(entry -> !entry.getKey().equals("template") && !entry.getKey().startsWith("qa") && !entry.getKey().startsWith("keyword"))
|
||||||
|
.forEach(entry -> properties.put(entry.getKey(), entry.getValue()));
|
||||||
|
entity.setProperties(new ObjectMapper().writeValueAsString(properties));
|
||||||
|
} catch (Exception e) {
|
||||||
|
logger.error(e.getMessage(), e);
|
||||||
|
}
|
||||||
|
|
||||||
|
|
||||||
|
return entity;
|
||||||
|
}
|
||||||
}
|
}
|
||||||
|
|
|
@ -1,13 +1,17 @@
|
||||||
package eu.eudat.models.rda.mapper;
|
package eu.eudat.models.rda.mapper;
|
||||||
|
|
||||||
import com.fasterxml.jackson.databind.JsonNode;
|
import com.fasterxml.jackson.databind.JsonNode;
|
||||||
|
import com.lowagie.text.ExceptionConverter;
|
||||||
import eu.eudat.logic.utilities.helpers.MyStringUtils;
|
import eu.eudat.logic.utilities.helpers.MyStringUtils;
|
||||||
import eu.eudat.models.rda.Distribution;
|
import eu.eudat.models.rda.Distribution;
|
||||||
|
import org.slf4j.Logger;
|
||||||
|
import org.slf4j.LoggerFactory;
|
||||||
|
|
||||||
import java.net.URI;
|
import java.net.URI;
|
||||||
import java.util.*;
|
import java.util.*;
|
||||||
|
|
||||||
public class DistributionRDAMapper {
|
public class DistributionRDAMapper {
|
||||||
|
private static final Logger logger = LoggerFactory.getLogger(DistributionRDAMapper.class);
|
||||||
|
|
||||||
public static List<Distribution> toRDAList(List<JsonNode> nodes) {
|
public static List<Distribution> toRDAList(List<JsonNode> nodes) {
|
||||||
Map<String, Distribution> rdaMap = new HashMap<>();
|
Map<String, Distribution> rdaMap = new HashMap<>();
|
||||||
|
@ -19,35 +23,43 @@ public class DistributionRDAMapper {
|
||||||
if (!rdaMap.containsValue(rda)) {
|
if (!rdaMap.containsValue(rda)) {
|
||||||
rdaMap.put(node.get("numbering").asText(), rda);
|
rdaMap.put(node.get("numbering").asText(), rda);
|
||||||
}
|
}
|
||||||
for (PropertyName propertyName : PropertyName.values()) {
|
for (ExportPropertyName exportPropertyName : ExportPropertyName.values()) {
|
||||||
if (rdaProperty.contains(propertyName.getName())) {
|
if (rdaProperty.contains(exportPropertyName.getName())) {
|
||||||
switch (propertyName) {
|
switch (exportPropertyName) {
|
||||||
case ACCESS_URL:
|
case ACCESS_URL:
|
||||||
rda.setAccessUrl(rdaValue);
|
rda.setAccessUrl(rdaValue);
|
||||||
|
rda.setAdditionalProperty(ImportPropertyName.ACCESS_URL.getName(), node.get("id").asText());
|
||||||
break;
|
break;
|
||||||
case AVAILABLE_UTIL:
|
case AVAILABLE_UTIL:
|
||||||
rda.setAvailableUntil(rdaValue);
|
rda.setAvailableUntil(rdaValue);
|
||||||
|
rda.setAdditionalProperty(ImportPropertyName.AVAILABLE_UTIL.getName(), node.get("id").asText());
|
||||||
break;
|
break;
|
||||||
case DOWNLOAD_URL:
|
case DOWNLOAD_URL:
|
||||||
rda.setDownloadUrl(URI.create(rdaValue));
|
rda.setDownloadUrl(URI.create(rdaValue));
|
||||||
|
rda.setAdditionalProperty(ImportPropertyName.DOWNLOAD_URL.getName(), node.get("id").asText());
|
||||||
break;
|
break;
|
||||||
case DESCRIPTION:
|
case DESCRIPTION:
|
||||||
rda.setDescription(rdaValue);
|
rda.setDescription(rdaValue);
|
||||||
|
rda.setAdditionalProperty(ImportPropertyName.DESCRIPTION.getName(), node.get("id").asText());
|
||||||
break;
|
break;
|
||||||
case DATA_ACCESS:
|
case DATA_ACCESS:
|
||||||
rda.setDataAccess(Distribution.DataAccess.fromValue(rdaValue));
|
rda.setDataAccess(Distribution.DataAccess.fromValue(rdaValue));
|
||||||
|
rda.setAdditionalProperty(ImportPropertyName.DATA_ACCESS.getName(), node.get("id").asText());
|
||||||
break;
|
break;
|
||||||
case BYTE_SIZE:
|
case BYTE_SIZE:
|
||||||
rda.setByteSize(Integer.parseInt(rdaValue));
|
rda.setByteSize(Integer.parseInt(rdaValue));
|
||||||
|
rda.setAdditionalProperty(ImportPropertyName.BYTE_SIZE.getName(), node.get("id").asText());
|
||||||
break;
|
break;
|
||||||
case LICENSE:
|
case LICENSE:
|
||||||
rda.setLicense(Collections.singletonList(LicenseRDAMapper.toRDA(node)));
|
rda.setLicense(Collections.singletonList(LicenseRDAMapper.toRDA(node)));
|
||||||
break;
|
break;
|
||||||
case FORMAT:
|
case FORMAT:
|
||||||
rda.setFormat(Collections.singletonList(rdaValue));
|
rda.setFormat(Collections.singletonList(rdaValue));
|
||||||
|
rda.setAdditionalProperty(ImportPropertyName.FORMAT.getName(), node.get("id").asText());
|
||||||
break;
|
break;
|
||||||
case TITLE:
|
case TITLE:
|
||||||
rda.setTitle(rdaValue);
|
rda.setTitle(rdaValue);
|
||||||
|
rda.setAdditionalProperty(ImportPropertyName.TITLE.getName(), node.get("id").asText());
|
||||||
break;
|
break;
|
||||||
case HOST:
|
case HOST:
|
||||||
rda.setHost(HostRDAMapper.toRDA(nodes, node.get("numbering").asText()));
|
rda.setHost(HostRDAMapper.toRDA(nodes, node.get("numbering").asText()));
|
||||||
|
@ -60,6 +72,49 @@ public class DistributionRDAMapper {
|
||||||
return new ArrayList<>(rdaMap.values());
|
return new ArrayList<>(rdaMap.values());
|
||||||
}
|
}
|
||||||
|
|
||||||
|
public static Map<String, String> toProperties(List<Distribution> rdas) {
|
||||||
|
Map<String, String> properties = new HashMap<>();
|
||||||
|
|
||||||
|
rdas.forEach(rda -> {
|
||||||
|
rda.getAdditionalProperties().entrySet().forEach(entry -> {
|
||||||
|
try {
|
||||||
|
ImportPropertyName importPropertyName = ImportPropertyName.fromString(entry.getKey());
|
||||||
|
switch (importPropertyName) {
|
||||||
|
case ACCESS_URL:
|
||||||
|
properties.put(entry.getValue().toString(), rda.getAccessUrl());
|
||||||
|
break;
|
||||||
|
case TITLE:
|
||||||
|
properties.put(entry.getValue().toString(), rda.getTitle());
|
||||||
|
break;
|
||||||
|
case DESCRIPTION:
|
||||||
|
properties.put(entry.getValue().toString(), rda.getDescription());
|
||||||
|
break;
|
||||||
|
case FORMAT:
|
||||||
|
properties.put(entry.getValue().toString(), rda.getFormat().get(0));
|
||||||
|
break;
|
||||||
|
case BYTE_SIZE:
|
||||||
|
properties.put(entry.getValue().toString(), rda.getByteSize().toString());
|
||||||
|
break;
|
||||||
|
case DATA_ACCESS:
|
||||||
|
properties.put(entry.getValue().toString(), rda.getDataAccess().value());
|
||||||
|
break;
|
||||||
|
case DOWNLOAD_URL:
|
||||||
|
properties.put(entry.getValue().toString(), rda.getDownloadUrl().toString());
|
||||||
|
break;
|
||||||
|
case AVAILABLE_UTIL:
|
||||||
|
properties.put(entry.getValue().toString(), rda.getAvailableUntil());
|
||||||
|
break;
|
||||||
|
}
|
||||||
|
} catch (Exception e) {
|
||||||
|
logger.error(e.getMessage(), e);
|
||||||
|
}
|
||||||
|
|
||||||
|
});
|
||||||
|
});
|
||||||
|
|
||||||
|
return properties;
|
||||||
|
}
|
||||||
|
|
||||||
public static Distribution toRDA(JsonNode node) {
|
public static Distribution toRDA(JsonNode node) {
|
||||||
Distribution rda = new Distribution();
|
Distribution rda = new Distribution();
|
||||||
String rdaProperty = node.get("rdaProperty").asText();
|
String rdaProperty = node.get("rdaProperty").asText();
|
||||||
|
@ -95,7 +150,7 @@ public class DistributionRDAMapper {
|
||||||
.max(Comparator.comparingInt(entry -> MyStringUtils.getFirstDifference(entry.getKey(), numbering))).map(Map.Entry::getValue).orElse(new Distribution());
|
.max(Comparator.comparingInt(entry -> MyStringUtils.getFirstDifference(entry.getKey(), numbering))).map(Map.Entry::getValue).orElse(new Distribution());
|
||||||
}
|
}
|
||||||
|
|
||||||
private enum PropertyName {
|
private enum ExportPropertyName {
|
||||||
ACCESS_URL("access_url"),
|
ACCESS_URL("access_url"),
|
||||||
AVAILABLE_UTIL("available_util"),
|
AVAILABLE_UTIL("available_util"),
|
||||||
BYTE_SIZE("byte_size"),
|
BYTE_SIZE("byte_size"),
|
||||||
|
@ -109,7 +164,7 @@ public class DistributionRDAMapper {
|
||||||
|
|
||||||
private final String name;
|
private final String name;
|
||||||
|
|
||||||
PropertyName(String name) {
|
ExportPropertyName(String name) {
|
||||||
this.name = name;
|
this.name = name;
|
||||||
}
|
}
|
||||||
|
|
||||||
|
@ -117,4 +172,36 @@ public class DistributionRDAMapper {
|
||||||
return name;
|
return name;
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
|
private enum ImportPropertyName {
|
||||||
|
ACCESS_URL("accessurlId"),
|
||||||
|
AVAILABLE_UTIL("availableUtilId"),
|
||||||
|
BYTE_SIZE("byteSizeId"),
|
||||||
|
DATA_ACCESS("dataAccessId"),
|
||||||
|
DESCRIPTION("descriptionId"),
|
||||||
|
DOWNLOAD_URL("downloadUrlId"),
|
||||||
|
FORMAT("formatId"),
|
||||||
|
/*HOST("host"),
|
||||||
|
LICENSE("license"),*/
|
||||||
|
TITLE("titleId");
|
||||||
|
|
||||||
|
private final String name;
|
||||||
|
|
||||||
|
ImportPropertyName(String name) {
|
||||||
|
this.name = name;
|
||||||
|
}
|
||||||
|
|
||||||
|
public String getName() {
|
||||||
|
return name;
|
||||||
|
}
|
||||||
|
|
||||||
|
public static ImportPropertyName fromString(String name) throws Exception {
|
||||||
|
for (ImportPropertyName importPropertyName: ImportPropertyName.values()) {
|
||||||
|
if (importPropertyName.getName().equals(name)) {
|
||||||
|
return importPropertyName;
|
||||||
|
}
|
||||||
|
}
|
||||||
|
throw new Exception("No name available");
|
||||||
|
}
|
||||||
|
}
|
||||||
}
|
}
|
||||||
|
|
|
@ -1,24 +1,26 @@
|
||||||
package eu.eudat.models.rda.mapper;
|
package eu.eudat.models.rda.mapper;
|
||||||
|
|
||||||
import eu.eudat.data.entities.DMP;
|
import eu.eudat.data.entities.*;
|
||||||
import eu.eudat.data.entities.UserDMP;
|
import eu.eudat.logic.services.ApiContext;
|
||||||
import eu.eudat.data.entities.UserInfo;
|
|
||||||
import eu.eudat.models.rda.Dmp;
|
import eu.eudat.models.rda.Dmp;
|
||||||
|
import eu.eudat.models.rda.DmpId;
|
||||||
import org.springframework.beans.factory.annotation.Autowired;
|
import org.springframework.beans.factory.annotation.Autowired;
|
||||||
import org.springframework.stereotype.Component;
|
import org.springframework.stereotype.Component;
|
||||||
|
|
||||||
import javax.transaction.Transactional;
|
import javax.transaction.Transactional;
|
||||||
import java.util.Collections;
|
import java.util.*;
|
||||||
import java.util.stream.Collectors;
|
import java.util.stream.Collectors;
|
||||||
|
|
||||||
@Component
|
@Component
|
||||||
public class DmpRDAMapper {
|
public class DmpRDAMapper {
|
||||||
|
|
||||||
private DatasetRDAMapper datasetRDAMapper;
|
private DatasetRDAMapper datasetRDAMapper;
|
||||||
|
private ApiContext apiContext;
|
||||||
|
|
||||||
@Autowired
|
@Autowired
|
||||||
public DmpRDAMapper(DatasetRDAMapper datasetRDAMapper) {
|
public DmpRDAMapper(DatasetRDAMapper datasetRDAMapper, ApiContext apiContext) {
|
||||||
this.datasetRDAMapper = datasetRDAMapper;
|
this.datasetRDAMapper = datasetRDAMapper;
|
||||||
|
this.apiContext = apiContext;
|
||||||
}
|
}
|
||||||
|
|
||||||
@Transactional
|
@Transactional
|
||||||
|
@ -44,8 +46,28 @@ public class DmpRDAMapper {
|
||||||
rda.setContributor(dmp.getUsers().stream().map(ContributorRDAMapper::toRDA).collect(Collectors.toList()));
|
rda.setContributor(dmp.getUsers().stream().map(ContributorRDAMapper::toRDA).collect(Collectors.toList()));
|
||||||
rda.setDataset(dmp.getDataset().stream().map(dataset -> datasetRDAMapper.toRDA(dataset)).collect(Collectors.toList()));
|
rda.setDataset(dmp.getDataset().stream().map(dataset -> datasetRDAMapper.toRDA(dataset)).collect(Collectors.toList()));
|
||||||
rda.setProject(Collections.singletonList(ProjectRDAMapper.toRDA(dmp.getProject(), dmp.getGrant())));
|
rda.setProject(Collections.singletonList(ProjectRDAMapper.toRDA(dmp.getProject(), dmp.getGrant())));
|
||||||
|
rda.setAdditionalProperty("templates", dmp.getAssociatedDmps().stream().map(datasetProfile -> datasetProfile.getId().toString()).toArray());
|
||||||
|
|
||||||
return rda;
|
return rda;
|
||||||
}
|
}
|
||||||
|
|
||||||
|
public DMP toEntity(Dmp rda) {
|
||||||
|
DMP entity = new DMP();
|
||||||
|
entity.setLabel(rda.getTitle());
|
||||||
|
if (rda.getDmpId().getType() == DmpId.Type.DOI) {
|
||||||
|
entity.setDoi(rda.getDmpId().getIdentifier());
|
||||||
|
}
|
||||||
|
entity.setCreated(rda.getCreated());
|
||||||
|
entity.setModified(rda.getModified());
|
||||||
|
entity.setDescription(rda.getDescription());
|
||||||
|
entity.setDataset(rda.getDataset().stream().map(rda1 -> datasetRDAMapper.toEntity(rda1)).collect(Collectors.toSet()));
|
||||||
|
Map<String, Object> result = ProjectRDAMapper.toEntity(rda.getProject().get(0), apiContext);
|
||||||
|
entity.setProject((Project) result.get("project"));
|
||||||
|
result.entrySet().stream().filter(entry -> entry.getKey().startsWith("grant")).forEach(entry -> entity.setGrant((Grant) entry.getValue()));
|
||||||
|
entity.setAssociatedDmps(((List<String>) rda.getAdditionalProperties().get("templates")).stream().map(this::getProfile).collect(Collectors.toSet()));
|
||||||
|
return entity;
|
||||||
|
}
|
||||||
|
|
||||||
|
private DatasetProfile getProfile(String id) {
|
||||||
|
return apiContext.getOperationsContext().getDatabaseRepository().getDatasetProfileDao().find(UUID.fromString(id));
|
||||||
|
}
|
||||||
}
|
}
|
||||||
|
|
|
@ -1,7 +1,8 @@
|
||||||
package eu.eudat.models.rda.mapper;
|
package eu.eudat.models.rda.mapper;
|
||||||
|
|
||||||
import eu.eudat.data.entities.Funder;
|
import eu.eudat.data.dao.criteria.GrantCriteria;
|
||||||
import eu.eudat.data.entities.Grant;
|
import eu.eudat.data.entities.Grant;
|
||||||
|
import eu.eudat.logic.services.ApiContext;
|
||||||
import eu.eudat.models.rda.Funding;
|
import eu.eudat.models.rda.Funding;
|
||||||
|
|
||||||
public class FundingRDAMapper {
|
public class FundingRDAMapper {
|
||||||
|
@ -22,4 +23,10 @@ public class FundingRDAMapper {
|
||||||
rda.setGrantId(GrantIdRDAMapper.toRDA(shortReference));
|
rda.setGrantId(GrantIdRDAMapper.toRDA(shortReference));
|
||||||
return rda;
|
return rda;
|
||||||
}
|
}
|
||||||
|
|
||||||
|
public static Grant toEntity(Funding rda, ApiContext apiContext) {
|
||||||
|
GrantCriteria criteria = new GrantCriteria();
|
||||||
|
criteria.setReference(rda.getGrantId().getIdentifier());
|
||||||
|
return apiContext.getOperationsContext().getDatabaseRepository().getGrantDao().getWithCriteria(criteria).getSingle();
|
||||||
|
}
|
||||||
}
|
}
|
||||||
|
|
|
@ -11,6 +11,7 @@ import org.slf4j.LoggerFactory;
|
||||||
|
|
||||||
import java.io.IOException;
|
import java.io.IOException;
|
||||||
import java.util.*;
|
import java.util.*;
|
||||||
|
import java.util.stream.Collectors;
|
||||||
|
|
||||||
public class MetadataRDAMapper {
|
public class MetadataRDAMapper {
|
||||||
private static final Logger logger = LoggerFactory.getLogger(MetadataRDAMapper.class);
|
private static final Logger logger = LoggerFactory.getLogger(MetadataRDAMapper.class);
|
||||||
|
@ -36,6 +37,7 @@ public class MetadataRDAMapper {
|
||||||
rdas.add(new Metadatum());
|
rdas.add(new Metadatum());
|
||||||
rdas.get(rdas.size() - 1).setMetadataStandardId(MetadataStandardIdRDAMapper.toRDA(data.get("uri").asText()));
|
rdas.get(rdas.size() - 1).setMetadataStandardId(MetadataStandardIdRDAMapper.toRDA(data.get("uri").asText()));
|
||||||
rdas.get(rdas.size() - 1).setDescription(data.get("label").asText());
|
rdas.get(rdas.size() - 1).setDescription(data.get("label").asText());
|
||||||
|
rdas.get(rdas.size() - 1).setAdditionalProperty("fieldId", node.get("id").asText());
|
||||||
rdaMap.put(data.get("uri").asText(), node.get("numbering").asText());
|
rdaMap.put(data.get("uri").asText(), node.get("numbering").asText());
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
@ -45,6 +47,7 @@ public class MetadataRDAMapper {
|
||||||
} else if (rdaValue instanceof TextNode && rdaProperty.contains("identifier") && !rdaValue.asText().isEmpty()) {
|
} else if (rdaValue instanceof TextNode && rdaProperty.contains("identifier") && !rdaValue.asText().isEmpty()) {
|
||||||
rdas.add(new Metadatum());
|
rdas.add(new Metadatum());
|
||||||
rdas.get(rdas.size() - 1).setMetadataStandardId(MetadataStandardIdRDAMapper.toRDA(rdaValue.asText()));
|
rdas.get(rdas.size() - 1).setMetadataStandardId(MetadataStandardIdRDAMapper.toRDA(rdaValue.asText()));
|
||||||
|
rdas.get(rdas.size() - 1).setAdditionalProperty("identifierId", node.get("id").asText());
|
||||||
rdaMap.put(rdaValue.asText(), node.get("numbering").asText());
|
rdaMap.put(rdaValue.asText(), node.get("numbering").asText());
|
||||||
}
|
}
|
||||||
break;
|
break;
|
||||||
|
@ -53,6 +56,7 @@ public class MetadataRDAMapper {
|
||||||
Metadatum rda = getRelative(rdas, rdaMap, node.get("numbering").asText());
|
Metadatum rda = getRelative(rdas, rdaMap, node.get("numbering").asText());
|
||||||
if (rda != null) {
|
if (rda != null) {
|
||||||
rda.setDescription(rdaValue.asText());
|
rda.setDescription(rdaValue.asText());
|
||||||
|
rda.setAdditionalProperty("descriptionId", node.get("id").asText());
|
||||||
} else {
|
} else {
|
||||||
rdas.stream().filter(rda1 -> rda1.getDescription() == null || rda1.getDescription().isEmpty()).forEach(rda1 -> rda1.setDescription(rdaValue.asText()));
|
rdas.stream().filter(rda1 -> rda1.getDescription() == null || rda1.getDescription().isEmpty()).forEach(rda1 -> rda1.setDescription(rdaValue.asText()));
|
||||||
}
|
}
|
||||||
|
@ -64,6 +68,7 @@ public class MetadataRDAMapper {
|
||||||
Metadatum rda = getRelative(rdas, rdaMap, node.get("numbering").asText());
|
Metadatum rda = getRelative(rdas, rdaMap, node.get("numbering").asText());
|
||||||
if (rda != null) {
|
if (rda != null) {
|
||||||
rda.setLanguage(lang);
|
rda.setLanguage(lang);
|
||||||
|
rda.setAdditionalProperty("languageId", node.get("id").asText());
|
||||||
} else {
|
} else {
|
||||||
rdas.forEach(rda1 -> rda1.setLanguage(lang));
|
rdas.forEach(rda1 -> rda1.setLanguage(lang));
|
||||||
}
|
}
|
||||||
|
@ -77,6 +82,40 @@ public class MetadataRDAMapper {
|
||||||
return rdas;
|
return rdas;
|
||||||
}
|
}
|
||||||
|
|
||||||
|
public static Map<String, String> toProperties(List<Metadatum> rdas) {
|
||||||
|
Map<String, String> properties = new HashMap<>();
|
||||||
|
List<Object> standardIds = new ArrayList<>();
|
||||||
|
ObjectMapper mapper = new ObjectMapper();
|
||||||
|
rdas.forEach(rda -> {
|
||||||
|
rda.getAdditionalProperties().entrySet().forEach(entry -> {
|
||||||
|
try {
|
||||||
|
switch (entry.getKey()) {
|
||||||
|
case "fieldId":
|
||||||
|
Map<String, String> metadata = toMap(rda);
|
||||||
|
standardIds.add(metadata);
|
||||||
|
properties.put(entry.getValue().toString(), mapper.writeValueAsString(standardIds));
|
||||||
|
break;
|
||||||
|
case "identifierId":
|
||||||
|
properties.put(entry.getValue().toString(), rda.getMetadataStandardId().getIdentifier());
|
||||||
|
break;
|
||||||
|
case "descriptionId":
|
||||||
|
properties.put(entry.getValue().toString(), rda.getDescription());
|
||||||
|
break;
|
||||||
|
case "languageId":
|
||||||
|
if (rda.getLanguage() != null) {
|
||||||
|
properties.put(entry.getValue().toString(), rda.getLanguage().value());
|
||||||
|
}
|
||||||
|
break;
|
||||||
|
}
|
||||||
|
}catch (Exception e) {
|
||||||
|
logger.error(e.getMessage(), e);
|
||||||
|
}
|
||||||
|
});
|
||||||
|
});
|
||||||
|
|
||||||
|
return properties;
|
||||||
|
}
|
||||||
|
|
||||||
public static Metadatum toRDA(JsonNode node) {
|
public static Metadatum toRDA(JsonNode node) {
|
||||||
Metadatum rda = new Metadatum();
|
Metadatum rda = new Metadatum();
|
||||||
String rdaProperty = node.get("rdaProperty").asText();
|
String rdaProperty = node.get("rdaProperty").asText();
|
||||||
|
@ -122,4 +161,31 @@ public class MetadataRDAMapper {
|
||||||
return name;
|
return name;
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
|
private static Map<String, String> toMap(Metadatum rda) {
|
||||||
|
Map<String, String> result = new HashMap<>();
|
||||||
|
|
||||||
|
ObjectMapper mapper = new ObjectMapper();
|
||||||
|
|
||||||
|
Map<String, Object> metadata = mapper.convertValue(rda, Map.class);
|
||||||
|
|
||||||
|
Map<String, String> metadataStandardId = mapper.convertValue(metadata.get("metadata_standard_id"), Map.class);
|
||||||
|
|
||||||
|
String url = metadataStandardId.remove("identifier");
|
||||||
|
metadataStandardId.remove("type");
|
||||||
|
metadataStandardId.put("uri", url);
|
||||||
|
|
||||||
|
metadata.remove("additional_properties");
|
||||||
|
metadata.remove("metadata_standard_id");
|
||||||
|
|
||||||
|
Map<String, String> newMetadata = metadata.entrySet().stream().collect(Collectors.toMap(Map.Entry::getKey, entry -> entry.getValue().toString()));
|
||||||
|
|
||||||
|
String label = newMetadata.remove("description");
|
||||||
|
newMetadata.put("label", label);
|
||||||
|
|
||||||
|
result.putAll(newMetadata);
|
||||||
|
result.putAll(metadataStandardId);
|
||||||
|
|
||||||
|
return result;
|
||||||
|
}
|
||||||
}
|
}
|
||||||
|
|
|
@ -2,9 +2,10 @@ package eu.eudat.models.rda.mapper;
|
||||||
|
|
||||||
import eu.eudat.data.entities.Funder;
|
import eu.eudat.data.entities.Funder;
|
||||||
import eu.eudat.data.entities.Grant;
|
import eu.eudat.data.entities.Grant;
|
||||||
|
import eu.eudat.logic.services.ApiContext;
|
||||||
import eu.eudat.models.rda.Project;
|
import eu.eudat.models.rda.Project;
|
||||||
|
|
||||||
import java.util.Collections;
|
import java.util.*;
|
||||||
|
|
||||||
public class ProjectRDAMapper {
|
public class ProjectRDAMapper {
|
||||||
|
|
||||||
|
@ -22,4 +23,23 @@ public class ProjectRDAMapper {
|
||||||
|
|
||||||
return rda;
|
return rda;
|
||||||
}
|
}
|
||||||
|
|
||||||
|
public static Map<String, Object> toEntity(Project rda, ApiContext apiContext) {
|
||||||
|
Map<String, Object> entities = new HashMap<>();
|
||||||
|
|
||||||
|
entities.put("project", new eu.eudat.data.entities.Project());
|
||||||
|
((eu.eudat.data.entities.Project) entities.get("project")).setLabel(rda.getTitle());
|
||||||
|
((eu.eudat.data.entities.Project) entities.get("project")).setDescription(rda.getDescription());
|
||||||
|
((eu.eudat.data.entities.Project) entities.get("project")).setId(UUID.randomUUID());
|
||||||
|
((eu.eudat.data.entities.Project) entities.get("project")).setStatus((short)1);
|
||||||
|
((eu.eudat.data.entities.Project) entities.get("project")).setCreated(new Date());
|
||||||
|
((eu.eudat.data.entities.Project) entities.get("project")).setModified(new Date());
|
||||||
|
((eu.eudat.data.entities.Project) entities.get("project")).setType(0);
|
||||||
|
apiContext.getOperationsContext().getDatabaseRepository().getProjectDao().createOrUpdate(((eu.eudat.data.entities.Project) entities.get("project")));
|
||||||
|
for (int i = 0; i < rda.getFunding().size(); i++) {
|
||||||
|
entities.put("grant" + (i + 1), FundingRDAMapper.toEntity(rda.getFunding().get(i), apiContext));
|
||||||
|
}
|
||||||
|
|
||||||
|
return entities;
|
||||||
|
}
|
||||||
}
|
}
|
||||||
|
|
|
@ -3,10 +3,13 @@ package eu.eudat.models.rda.mapper;
|
||||||
import com.fasterxml.jackson.databind.JsonNode;
|
import com.fasterxml.jackson.databind.JsonNode;
|
||||||
import eu.eudat.logic.utilities.helpers.MyStringUtils;
|
import eu.eudat.logic.utilities.helpers.MyStringUtils;
|
||||||
import eu.eudat.models.rda.SecurityAndPrivacy;
|
import eu.eudat.models.rda.SecurityAndPrivacy;
|
||||||
|
import org.slf4j.Logger;
|
||||||
|
import org.slf4j.LoggerFactory;
|
||||||
|
|
||||||
import java.util.*;
|
import java.util.*;
|
||||||
|
|
||||||
public class SecurityAndPrivacyRDAMapper {
|
public class SecurityAndPrivacyRDAMapper {
|
||||||
|
private static final Logger logger = LoggerFactory.getLogger(SecurityAndPrivacyRDAMapper.class);
|
||||||
|
|
||||||
public static List<SecurityAndPrivacy> toRDAList(List<JsonNode> nodes) {
|
public static List<SecurityAndPrivacy> toRDAList(List<JsonNode> nodes) {
|
||||||
Map<String, SecurityAndPrivacy> rdaMap = new HashMap<>();
|
Map<String, SecurityAndPrivacy> rdaMap = new HashMap<>();
|
||||||
|
@ -19,14 +22,16 @@ public class SecurityAndPrivacyRDAMapper {
|
||||||
if (!rdaMap.containsValue(rda)) {
|
if (!rdaMap.containsValue(rda)) {
|
||||||
rdaMap.put(node.get("numbering").asText(), rda);
|
rdaMap.put(node.get("numbering").asText(), rda);
|
||||||
}
|
}
|
||||||
for (PropertyName propertyName: PropertyName.values()) {
|
for (ExportPropertyName exportPropertyName : ExportPropertyName.values()) {
|
||||||
if (rdaProperty.contains(propertyName.getName())) {
|
if (rdaProperty.contains(exportPropertyName.getName())) {
|
||||||
switch (propertyName) {
|
switch (exportPropertyName) {
|
||||||
case TITLE:
|
case TITLE:
|
||||||
rda.setTitle(rdaValue);
|
rda.setTitle(rdaValue);
|
||||||
|
rda.getAdditionalProperties().put(ImportPropertyName.TITLE.getName(), node.get("id").asText());
|
||||||
break;
|
break;
|
||||||
case DESCRIPTION:
|
case DESCRIPTION:
|
||||||
rda.setDescription(rdaValue);
|
rda.setDescription(rdaValue);
|
||||||
|
rda.getAdditionalProperties().put(ImportPropertyName.DESCRIPTION.getName(), node.get("id").asText());
|
||||||
break;
|
break;
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
@ -36,6 +41,27 @@ public class SecurityAndPrivacyRDAMapper {
|
||||||
return new ArrayList<>(rdaMap.values());
|
return new ArrayList<>(rdaMap.values());
|
||||||
}
|
}
|
||||||
|
|
||||||
|
public static Map<String, String> toProperties(List<SecurityAndPrivacy> rdas) {
|
||||||
|
Map<String, String> properties = new HashMap<>();
|
||||||
|
rdas.forEach(rda -> rda.getAdditionalProperties().entrySet().forEach(entry -> {
|
||||||
|
try {
|
||||||
|
ImportPropertyName importPropertyName = ImportPropertyName.fromString(entry.getKey());
|
||||||
|
switch(importPropertyName) {
|
||||||
|
case TITLE:
|
||||||
|
properties.put(entry.getValue().toString(), rda.getTitle());
|
||||||
|
break;
|
||||||
|
case DESCRIPTION:
|
||||||
|
properties.put(entry.getValue().toString(), rda.getDescription());
|
||||||
|
break;
|
||||||
|
}
|
||||||
|
} catch (Exception e) {
|
||||||
|
logger.error(e.getMessage(), e);
|
||||||
|
}
|
||||||
|
}));
|
||||||
|
|
||||||
|
return properties;
|
||||||
|
}
|
||||||
|
|
||||||
public static SecurityAndPrivacy toRDA(JsonNode node) {
|
public static SecurityAndPrivacy toRDA(JsonNode node) {
|
||||||
SecurityAndPrivacy rda = new SecurityAndPrivacy();
|
SecurityAndPrivacy rda = new SecurityAndPrivacy();
|
||||||
String rdaProperty = node.get("rdaProperty").asText();
|
String rdaProperty = node.get("rdaProperty").asText();
|
||||||
|
@ -55,13 +81,13 @@ public class SecurityAndPrivacyRDAMapper {
|
||||||
.max(Comparator.comparingInt(entry -> MyStringUtils.getFirstDifference(entry.getKey(), numbering))).map(Map.Entry::getValue).orElse(new SecurityAndPrivacy());
|
.max(Comparator.comparingInt(entry -> MyStringUtils.getFirstDifference(entry.getKey(), numbering))).map(Map.Entry::getValue).orElse(new SecurityAndPrivacy());
|
||||||
}
|
}
|
||||||
|
|
||||||
private enum PropertyName {
|
private enum ExportPropertyName {
|
||||||
TITLE("title"),
|
TITLE("title"),
|
||||||
DESCRIPTION("description");
|
DESCRIPTION("description");
|
||||||
|
|
||||||
private String name;
|
private String name;
|
||||||
|
|
||||||
PropertyName(String name) {
|
ExportPropertyName(String name) {
|
||||||
this.name = name;
|
this.name = name;
|
||||||
}
|
}
|
||||||
|
|
||||||
|
@ -69,4 +95,28 @@ public class SecurityAndPrivacyRDAMapper {
|
||||||
return name;
|
return name;
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
|
private enum ImportPropertyName {
|
||||||
|
TITLE("titleId"),
|
||||||
|
DESCRIPTION("descriptionId");
|
||||||
|
|
||||||
|
private String name;
|
||||||
|
|
||||||
|
ImportPropertyName(String name) {
|
||||||
|
this.name = name;
|
||||||
|
}
|
||||||
|
|
||||||
|
public String getName() {
|
||||||
|
return name;
|
||||||
|
}
|
||||||
|
|
||||||
|
public static ImportPropertyName fromString(String name) throws Exception {
|
||||||
|
for (ImportPropertyName importPropertyName: ImportPropertyName.values()) {
|
||||||
|
if (importPropertyName.getName().equals(name)) {
|
||||||
|
return importPropertyName;
|
||||||
|
}
|
||||||
|
}
|
||||||
|
throw new Exception("Property not available");
|
||||||
|
}
|
||||||
|
}
|
||||||
}
|
}
|
||||||
|
|
|
@ -2,12 +2,14 @@ package eu.eudat.models.rda.mapper;
|
||||||
|
|
||||||
import com.fasterxml.jackson.databind.JsonNode;
|
import com.fasterxml.jackson.databind.JsonNode;
|
||||||
import eu.eudat.logic.utilities.helpers.MyStringUtils;
|
import eu.eudat.logic.utilities.helpers.MyStringUtils;
|
||||||
import eu.eudat.models.rda.SecurityAndPrivacy;
|
|
||||||
import eu.eudat.models.rda.TechnicalResource;
|
import eu.eudat.models.rda.TechnicalResource;
|
||||||
|
import org.slf4j.Logger;
|
||||||
|
import org.slf4j.LoggerFactory;
|
||||||
|
|
||||||
import java.util.*;
|
import java.util.*;
|
||||||
|
|
||||||
public class TechnicalResourceRDAMapper {
|
public class TechnicalResourceRDAMapper {
|
||||||
|
private static final Logger logger = LoggerFactory.getLogger(TechnicalResourceRDAMapper.class);
|
||||||
|
|
||||||
public static List<TechnicalResource> toRDAList(List<JsonNode> nodes) {
|
public static List<TechnicalResource> toRDAList(List<JsonNode> nodes) {
|
||||||
Map<String, TechnicalResource> rdaMap = new HashMap<>();
|
Map<String, TechnicalResource> rdaMap = new HashMap<>();
|
||||||
|
@ -20,14 +22,16 @@ public class TechnicalResourceRDAMapper {
|
||||||
if (!rdaMap.containsValue(rda)) {
|
if (!rdaMap.containsValue(rda)) {
|
||||||
rdaMap.put(node.get("numbering").asText(), rda);
|
rdaMap.put(node.get("numbering").asText(), rda);
|
||||||
}
|
}
|
||||||
for (PropertyName propertyName: PropertyName.values()) {
|
for (ExportPropertyName exportPropertyName : ExportPropertyName.values()) {
|
||||||
if (rdaProperty.contains(propertyName.getName())) {
|
if (rdaProperty.contains(exportPropertyName.getName())) {
|
||||||
switch (propertyName) {
|
switch (exportPropertyName) {
|
||||||
case NAME:
|
case NAME:
|
||||||
rda.setName(rdaValue);
|
rda.setName(rdaValue);
|
||||||
|
rda.setAdditionalProperty(ImportPropertyName.NAME.getName(), node.get("id").asText());
|
||||||
break;
|
break;
|
||||||
case DESCRIPTION:
|
case DESCRIPTION:
|
||||||
rda.setDescription(rdaValue);
|
rda.setDescription(rdaValue);
|
||||||
|
rda.setAdditionalProperty(ImportPropertyName.DESCRIPTION.getName(), node.get("id").asText());
|
||||||
break;
|
break;
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
@ -37,6 +41,28 @@ public class TechnicalResourceRDAMapper {
|
||||||
return new ArrayList<>(rdaMap.values());
|
return new ArrayList<>(rdaMap.values());
|
||||||
}
|
}
|
||||||
|
|
||||||
|
public static Map<String, String> toProperties(List<TechnicalResource> rdas) {
|
||||||
|
Map<String, String> properties = new HashMap<>();
|
||||||
|
|
||||||
|
rdas.forEach(rda -> rda.getAdditionalProperties().entrySet().forEach(entry -> {
|
||||||
|
try {
|
||||||
|
ImportPropertyName importPropertyName = ImportPropertyName.fromString(entry.getKey());
|
||||||
|
switch(importPropertyName) {
|
||||||
|
case DESCRIPTION:
|
||||||
|
properties.put(entry.getValue().toString(), rda.getDescription());
|
||||||
|
break;
|
||||||
|
case NAME:
|
||||||
|
properties.put(entry.getValue().toString(), rda.getName());
|
||||||
|
break;
|
||||||
|
}
|
||||||
|
} catch (Exception e) {
|
||||||
|
logger.error(e.getMessage(), e);
|
||||||
|
}
|
||||||
|
}));
|
||||||
|
|
||||||
|
return properties;
|
||||||
|
}
|
||||||
|
|
||||||
public static TechnicalResource toRDA(JsonNode node) {
|
public static TechnicalResource toRDA(JsonNode node) {
|
||||||
TechnicalResource rda = new TechnicalResource();
|
TechnicalResource rda = new TechnicalResource();
|
||||||
String rdaProperty = node.get("rdaProperty").asText();
|
String rdaProperty = node.get("rdaProperty").asText();
|
||||||
|
@ -56,13 +82,13 @@ public class TechnicalResourceRDAMapper {
|
||||||
.max(Comparator.comparingInt(entry -> MyStringUtils.getFirstDifference(entry.getKey(), numbering))).map(Map.Entry::getValue).orElse(new TechnicalResource());
|
.max(Comparator.comparingInt(entry -> MyStringUtils.getFirstDifference(entry.getKey(), numbering))).map(Map.Entry::getValue).orElse(new TechnicalResource());
|
||||||
}
|
}
|
||||||
|
|
||||||
private enum PropertyName {
|
private enum ExportPropertyName {
|
||||||
NAME("name"),
|
NAME("name"),
|
||||||
DESCRIPTION("description");
|
DESCRIPTION("description");
|
||||||
|
|
||||||
private String name;
|
private String name;
|
||||||
|
|
||||||
PropertyName(String name) {
|
ExportPropertyName(String name) {
|
||||||
this.name = name;
|
this.name = name;
|
||||||
}
|
}
|
||||||
|
|
||||||
|
@ -70,4 +96,28 @@ public class TechnicalResourceRDAMapper {
|
||||||
return name;
|
return name;
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
|
private enum ImportPropertyName {
|
||||||
|
NAME("nameId"),
|
||||||
|
DESCRIPTION("descriptionId");
|
||||||
|
|
||||||
|
private String name;
|
||||||
|
|
||||||
|
ImportPropertyName(String name) {
|
||||||
|
this.name = name;
|
||||||
|
}
|
||||||
|
|
||||||
|
public String getName() {
|
||||||
|
return name;
|
||||||
|
}
|
||||||
|
|
||||||
|
public static ImportPropertyName fromString(String name) throws Exception {
|
||||||
|
for (ImportPropertyName importPropertyName: ImportPropertyName.values()) {
|
||||||
|
if (importPropertyName.getName().equals(name)) {
|
||||||
|
return importPropertyName;
|
||||||
|
}
|
||||||
|
}
|
||||||
|
throw new Exception("Property name not available");
|
||||||
|
}
|
||||||
|
}
|
||||||
}
|
}
|
||||||
|
|
|
@ -7,7 +7,7 @@
|
||||||
<button class="col-auto attach-file" (click)="fileInput.click()" type="button">
|
<button class="col-auto attach-file" (click)="fileInput.click()" type="button">
|
||||||
<mat-icon color="primary">attach_file</mat-icon>
|
<mat-icon color="primary">attach_file</mat-icon>
|
||||||
</button>
|
</button>
|
||||||
<input class="hidden" #fileInput type="file" (change)="uploadFile($event)" accept="text/xml">
|
<input class="hidden" #fileInput type="file" (change)="uploadFile($event)" accept="text/xml, application/json">
|
||||||
</div>
|
</div>
|
||||||
</div>
|
</div>
|
||||||
<div class="row">
|
<div class="row">
|
||||||
|
|
Loading…
Reference in New Issue