prefiling service refactor

This commit is contained in:
Efstratios Giannopoulos 2024-01-05 18:32:24 +02:00
parent 043b43b9be
commit 658310d8ce
74 changed files with 1179 additions and 294 deletions

View File

@ -164,6 +164,10 @@ public final class Permission {
public static String BrowseTenantUser = "BrowseTenantUser"; public static String BrowseTenantUser = "BrowseTenantUser";
public static String EditTenantUser = "EditTenantUser"; public static String EditTenantUser = "EditTenantUser";
public static String DeleteTenantUser = "DeleteTenantUser"; public static String DeleteTenantUser = "DeleteTenantUser";
//Prefilling
public static String BrowsePrefilling = "BrowsePrefilling";
//Lock //Lock
public static String BrowseLock = "BrowseLock"; public static String BrowseLock = "BrowseLock";

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@ -77,15 +77,18 @@ public class DefinitionEntity implements XmlSerializable<DefinitionEntity> {
} }
return this; return this;
} }
public List<FieldEntity> getFieldById(String id){ public List<FieldEntity> getAllField(){
List<FieldEntity> fieldEntities = new ArrayList<>(); List<FieldEntity> fieldEntities = new ArrayList<>();
if (id == null || id.isBlank()) return fieldEntities;
if (this.getSections() != null){ if (this.getSections() != null){
for (SectionEntity sectionEntity: this.getSections()) { for (SectionEntity sectionEntity: this.getSections()) {
fieldEntities.addAll(sectionEntity.getFieldById(id)); fieldEntities.addAll(sectionEntity.getAllField());
} }
} }
return fieldEntities; return fieldEntities;
} }
public List<FieldEntity> getFieldById(String id) {
return this.getAllField().stream().filter(x-> id.equals(x.getId())).toList();
}
} }

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@ -190,11 +190,8 @@ public class FieldSetEntity implements DatabaseViewStyleDefinition, XmlSerializa
this.multiplicity.setTableView(Boolean.parseBoolean(multiplicity.getAttribute("tableView"))); this.multiplicity.setTableView(Boolean.parseBoolean(multiplicity.getAttribute("tableView")));
return this; return this;
} }
public List<FieldEntity> getAllField() {
public List<FieldEntity> getFieldById(String id){ return this.getFields() == null ? new ArrayList<>() : this.getFields();
if (this.getFields() == null || id == null || id.isBlank()) return new ArrayList<>();
return this.getFields().stream().filter(x-> id.equals(x.getId())).toList();
} }
} }

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@ -209,17 +209,16 @@ public class SectionEntity implements DatabaseViewStyleDefinition, XmlSerializab
return this; return this;
} }
public List<FieldEntity> getFieldById(String id){ public List<FieldEntity> getAllField(){
List<FieldEntity> fieldEntities = new ArrayList<>(); List<FieldEntity> fieldEntities = new ArrayList<>();
if (id == null || id.isBlank()) return fieldEntities;
if (this.getFieldSets() != null){ if (this.getFieldSets() != null){
for (FieldSetEntity fieldSetEntity: this.getFieldSets()) { for (FieldSetEntity fieldSetEntity: this.getFieldSets()) {
fieldEntities.addAll(fieldSetEntity.getFieldById(id)); fieldEntities.addAll(fieldSetEntity.getAllField());
} }
} }
if (this.getSections() != null){ if (this.getSections() != null){
for (SectionEntity sectionEntity: this.getSections()) { for (SectionEntity sectionEntity: this.getSections()) {
fieldEntities.addAll(sectionEntity.getFieldById(id)); fieldEntities.addAll(sectionEntity.getAllField());
} }
} }
return fieldEntities; return fieldEntities;

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@ -0,0 +1,65 @@
package eu.eudat.commons.types.prefilling;
import eu.eudat.commons.JsonHandlingService;
import java.util.Map;
public class PrefillingEntity {
private String pid;
private String name;
private Map<String, Object> data;
private String key;
private String tag;
public String getPid() {
return pid;
}
public void setPid(String pid) {
this.pid = pid;
}
public String getName() {
return name;
}
public void setName(String name) {
this.name = name;
}
public Map<String, Object> getData() {
return data;
}
public void setData(Map<String, Object> data) {
this.data = data;
}
public String getKey() {
return key;
}
public void setKey(String key) {
this.key = key;
}
public String getTag() {
return tag;
}
public void setTag(String tag) {
this.tag = tag;
}
public static PrefillingEntity build(Map<String, String> fetchedData, JsonHandlingService jsonHandlingService){
PrefillingEntity m = new PrefillingEntity();
m.setPid(fetchedData.getOrDefault("pid", null));
m.setName(fetchedData.getOrDefault("name", null));
m.setKey(fetchedData.getOrDefault("key", null));
m.setTag(fetchedData.getOrDefault("tag", null));
m.setData(jsonHandlingService.fromJsonSafe(Map.class,fetchedData.getOrDefault("data", null)));
return m;
}
}

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@ -1,13 +1,19 @@
package eu.eudat.models.data.prefilling; package eu.eudat.model;
import java.util.Map; import java.util.Map;
public class Prefilling { public class Prefilling {
private String pid; private String pid;
public static final String _pid = "pid";
private String name; private String name;
public static final String _name = "name";
private Map<String, Object> data; private Map<String, Object> data;
public static final String _data = "data";
private String key; private String key;
public static final String _key = "key";
private String tag; private String tag;
public static final String _tag = "tag";
public String getPid() { public String getPid() {
return pid; return pid;

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@ -0,0 +1,23 @@
package eu.eudat.model;
import eu.eudat.commons.enums.IsActive;
import eu.eudat.query.UserQuery;
import eu.eudat.query.lookup.UserRoleLookup;
import gr.cite.tools.data.query.Lookup;
import gr.cite.tools.data.query.QueryFactory;
import java.util.List;
import java.util.UUID;
public class PrefillingLookup extends Lookup {
private String like;
public String getLike() {
return like;
}
public void setLike(String like) {
this.like = like;
}
}

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@ -0,0 +1,94 @@
package eu.eudat.model.builder;
import eu.eudat.authorization.AuthorizationFlags;
import eu.eudat.commons.enums.ContactInfoType;
import eu.eudat.commons.types.prefilling.PrefillingEntity;
import eu.eudat.convention.ConventionService;
import eu.eudat.data.UserEntity;
import eu.eudat.model.DmpAssociatedUser;
import eu.eudat.model.Prefilling;
import eu.eudat.model.User;
import eu.eudat.model.UserContactInfo;
import eu.eudat.query.UserContactInfoQuery;
import gr.cite.tools.data.builder.BuilderFactory;
import gr.cite.tools.data.query.QueryFactory;
import gr.cite.tools.exception.MyApplicationException;
import gr.cite.tools.fieldset.BaseFieldSet;
import gr.cite.tools.fieldset.FieldSet;
import gr.cite.tools.logging.DataLogEntry;
import gr.cite.tools.logging.LoggerService;
import org.slf4j.LoggerFactory;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.beans.factory.config.ConfigurableBeanFactory;
import org.springframework.context.annotation.Scope;
import org.springframework.stereotype.Component;
import java.util.*;
import java.util.stream.Collectors;
@Component
@Scope(value = ConfigurableBeanFactory.SCOPE_PROTOTYPE)
public class PrefillingBuilder extends BaseBuilder<Prefilling, PrefillingEntity> {
private final QueryFactory queryFactory;
private final BuilderFactory builderFactory;
private EnumSet<AuthorizationFlags> authorize = EnumSet.of(AuthorizationFlags.None);
@Autowired
public PrefillingBuilder(ConventionService conventionService,
QueryFactory queryFactory,
BuilderFactory builderFactory) {
super(conventionService, new LoggerService(LoggerFactory.getLogger(PrefillingBuilder.class)));
this.queryFactory = queryFactory;
this.builderFactory = builderFactory;
}
public PrefillingBuilder authorize(EnumSet<AuthorizationFlags> values) {
this.authorize = values;
return this;
}
@Override
public List<Prefilling> build(FieldSet fields, List<PrefillingEntity> data) throws MyApplicationException {
this.logger.debug("building for {} items requesting {} fields", Optional.ofNullable(data).map(List::size).orElse(0), Optional.ofNullable(fields).map(FieldSet::getFields).map(Set::size).orElse(0));
this.logger.trace(new DataLogEntry("requested fields", fields));
if (fields == null || data == null || fields.isEmpty())
return new ArrayList<>();
List<Prefilling> models = new ArrayList<>();
for (PrefillingEntity d : data) {
Prefilling m = new Prefilling();
if (fields.hasField(this.asIndexer(Prefilling._pid))) m.setPid(d.getPid());
if (fields.hasField(this.asIndexer(Prefilling._name))) m.setName(d.getName());
if (fields.hasField(this.asIndexer(Prefilling._key))) m.setKey(d.getKey());
if (fields.hasField(this.asIndexer(Prefilling._tag))) m.setTag(d.getTag());
if (fields.hasField(this.asIndexer(Prefilling._data))) m.setData(d.getData());
models.add(m);
}
this.logger.debug("build {} items", Optional.of(models).map(List::size).orElse(0));
return models;
}
private Map<UUID, List<UserContactInfo>> collectUserContactInfos(FieldSet fields, List<UserEntity> data) throws MyApplicationException {
if (fields.isEmpty() || data.isEmpty()) return null;
this.logger.debug("checking related - {}", UserContactInfo.class.getSimpleName());
Map<UUID, List<UserContactInfo>> itemMap;
FieldSet clone = new BaseFieldSet(fields.getFields()).ensure(this.asIndexer(UserContactInfo._user, User._id));
UserContactInfoQuery query = this.queryFactory.query(UserContactInfoQuery.class).authorize(this.authorize).userIds(data.stream().map(UserEntity::getId).distinct().collect(Collectors.toList()));
itemMap = this.builderFactory.builder(UserContactInfoBuilder.class).authorize(this.authorize).asMasterKey(query, clone, x -> x.getUser().getId());
if (!fields.hasField(this.asIndexer(UserContactInfo._user, User._id))) {
itemMap.values().stream().flatMap(List::stream).filter(x -> x != null && x.getUser() != null).peek(x -> {
x.getUser().setId(null);
});
}
return itemMap;
}
}

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@ -0,0 +1,39 @@
package eu.eudat.model.censorship;
import eu.eudat.authorization.OwnedResource;
import eu.eudat.authorization.Permission;
import eu.eudat.convention.ConventionService;
import gr.cite.commons.web.authz.service.AuthorizationService;
import gr.cite.tools.fieldset.FieldSet;
import gr.cite.tools.logging.DataLogEntry;
import gr.cite.tools.logging.LoggerService;
import org.slf4j.LoggerFactory;
import org.springframework.beans.factory.config.ConfigurableBeanFactory;
import org.springframework.context.annotation.Scope;
import org.springframework.stereotype.Component;
import java.util.List;
import java.util.UUID;
@Component
@Scope(value = ConfigurableBeanFactory.SCOPE_PROTOTYPE)
public class PrefillingCensor extends BaseCensor {
private static final LoggerService logger = new LoggerService(LoggerFactory.getLogger(PrefillingCensor.class));
protected final AuthorizationService authService;
public PrefillingCensor(ConventionService conventionService, AuthorizationService authService) {
super(conventionService);
this.authService = authService;
}
public void censor(FieldSet fields, UUID userId) {
logger.debug(new DataLogEntry("censoring fields", fields));
if (fields == null || fields.isEmpty())
return;
this.authService.authorizeAtLeastOneForce(userId != null ? List.of(new OwnedResource(userId)) : null, Permission.BrowsePrefilling);
}
}

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@ -0,0 +1,107 @@
package eu.eudat.model.persist;
import eu.eudat.commons.validation.BaseValidator;
import eu.eudat.commons.validation.specification.Specification;
import eu.eudat.convention.ConventionService;
import eu.eudat.errorcode.ErrorThesaurusProperties;
import gr.cite.tools.fieldset.BaseFieldSet;
import org.springframework.beans.factory.config.ConfigurableBeanFactory;
import org.springframework.context.MessageSource;
import org.springframework.context.annotation.Scope;
import org.springframework.context.i18n.LocaleContextHolder;
import org.springframework.stereotype.Component;
import java.util.Arrays;
import java.util.List;
import java.util.Map;
import java.util.UUID;
public class DescriptionProfilingRequest {
private String prefillId;
public static final String _prefillId = "prefillId";
private String configId;
public static final String _configId = "configId";
private UUID descriptionTemplateId;
public static final String _descriptionTemplateId = "descriptionTemplateId";
private BaseFieldSet project;
public static final String _project = "project";
public String getPrefillId() {
return prefillId;
}
public void setPrefillId(String prefillId) {
this.prefillId = prefillId;
}
public String getConfigId() {
return configId;
}
public void setConfigId(String configId) {
this.configId = configId;
}
public UUID getDescriptionTemplateId() {
return descriptionTemplateId;
}
public void setDescriptionTemplateId(UUID descriptionTemplateId) {
this.descriptionTemplateId = descriptionTemplateId;
}
public BaseFieldSet getProject() {
return project;
}
public void setProject(BaseFieldSet project) {
this.project = project;
}
@Component(DescriptionProfilingRequestValidator.ValidatorName)
@Scope(ConfigurableBeanFactory.SCOPE_PROTOTYPE)
public static class DescriptionProfilingRequestValidator extends BaseValidator<DescriptionProfilingRequest> {
public static final String ValidatorName = "DescriptionProfilingRequestValidator";
private final MessageSource messageSource;
protected DescriptionProfilingRequestValidator(ConventionService conventionService, ErrorThesaurusProperties errors, MessageSource messageSource) {
super(conventionService, errors);
this.messageSource = messageSource;
}
@Override
protected Class<DescriptionProfilingRequest> modelClass() {
return DescriptionProfilingRequest.class;
}
@Override
protected List<Specification> specifications(DescriptionProfilingRequest item) {
return Arrays.asList(
this.spec()
.must(() -> this.isValidGuid(item.getDescriptionTemplateId()))
.failOn(DescriptionProfilingRequest._descriptionTemplateId).failWith(messageSource.getMessage("Validation_Required", new Object[]{DescriptionProfilingRequest._descriptionTemplateId}, LocaleContextHolder.getLocale())),
this.spec()
.must(() -> !this.isEmpty(item.getConfigId()))
.failOn(DescriptionProfilingRequest._configId).failWith(messageSource.getMessage("Validation_Required", new Object[]{DescriptionProfilingRequest._configId}, LocaleContextHolder.getLocale())),
this.spec()
.must(() -> !this.isEmpty(item.getPrefillId()))
.failOn(DescriptionProfilingRequest._prefillId).failWith(messageSource.getMessage("Validation_Required", new Object[]{DescriptionProfilingRequest._prefillId}, LocaleContextHolder.getLocale())),
this.spec()
.must(() -> item.getProject() != null)
.failOn(DescriptionProfilingRequest._project).failWith(messageSource.getMessage("Validation_Required", new Object[]{DescriptionProfilingRequest._project}, LocaleContextHolder.getLocale()))
);
}
}
}

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@ -0,0 +1,106 @@
package eu.eudat.model.persist;
import eu.eudat.commons.validation.BaseValidator;
import eu.eudat.commons.validation.specification.Specification;
import eu.eudat.convention.ConventionService;
import eu.eudat.errorcode.ErrorThesaurusProperties;
import gr.cite.tools.fieldset.BaseFieldSet;
import org.springframework.beans.factory.config.ConfigurableBeanFactory;
import org.springframework.context.MessageSource;
import org.springframework.context.annotation.Scope;
import org.springframework.context.i18n.LocaleContextHolder;
import org.springframework.stereotype.Component;
import java.util.Arrays;
import java.util.List;
import java.util.Map;
import java.util.UUID;
public class DescriptionProfilingWithDataRequest {
private Map<String, Object> data;
public static final String _data = "data";
private String configId;
public static final String _configId = "configId";
private UUID descriptionTemplateId;
public static final String _descriptionTemplateId = "descriptionTemplateId";
private BaseFieldSet project;
public static final String _project = "project";
public Map<String, Object> getData() {
return data;
}
public void setData(Map<String, Object> data) {
this.data = data;
}
public String getConfigId() {
return configId;
}
public void setConfigId(String configId) {
this.configId = configId;
}
public UUID getDescriptionTemplateId() {
return descriptionTemplateId;
}
public void setDescriptionTemplateId(UUID descriptionTemplateId) {
this.descriptionTemplateId = descriptionTemplateId;
}
public BaseFieldSet getProject() {
return project;
}
public void setProject(BaseFieldSet project) {
this.project = project;
}
@Component(DescriptionProfilingWithDataRequestValidator.ValidatorName)
@Scope(ConfigurableBeanFactory.SCOPE_PROTOTYPE)
public static class DescriptionProfilingWithDataRequestValidator extends BaseValidator<DescriptionProfilingWithDataRequest> {
public static final String ValidatorName = "DescriptionProfilingWithDataRequestValidator";
private final MessageSource messageSource;
protected DescriptionProfilingWithDataRequestValidator(ConventionService conventionService, ErrorThesaurusProperties errors, MessageSource messageSource) {
super(conventionService, errors);
this.messageSource = messageSource;
}
@Override
protected Class<DescriptionProfilingWithDataRequest> modelClass() {
return DescriptionProfilingWithDataRequest.class;
}
@Override
protected List<Specification> specifications(DescriptionProfilingWithDataRequest item) {
return Arrays.asList(
this.spec()
.must(() -> this.isValidGuid(item.getDescriptionTemplateId()))
.failOn(DescriptionProfilingWithDataRequest._descriptionTemplateId).failWith(messageSource.getMessage("Validation_Required", new Object[]{DescriptionProfilingWithDataRequest._descriptionTemplateId}, LocaleContextHolder.getLocale())),
this.spec()
.must(() -> !this.isEmpty(item.getConfigId()))
.failOn(DescriptionProfilingWithDataRequest._configId).failWith(messageSource.getMessage("Validation_Required", new Object[]{DescriptionProfilingWithDataRequest._configId}, LocaleContextHolder.getLocale())),
this.spec()
.must(() -> item.getData() != null)
.failOn(DescriptionProfilingWithDataRequest._data).failWith(messageSource.getMessage("Validation_Required", new Object[]{DescriptionProfilingWithDataRequest._data}, LocaleContextHolder.getLocale())),
this.spec()
.must(() -> item.getProject() != null)
.failOn(DescriptionProfilingWithDataRequest._project).failWith(messageSource.getMessage("Validation_Required", new Object[]{DescriptionProfilingWithDataRequest._project}, LocaleContextHolder.getLocale()))
);
}
}
}

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@ -0,0 +1,24 @@
package eu.eudat.service.prefilling;
import eu.eudat.model.Description;
import eu.eudat.model.Prefilling;
import eu.eudat.model.PrefillingLookup;
import eu.eudat.model.persist.DescriptionProfilingRequest;
import eu.eudat.model.persist.DescriptionProfilingWithDataRequest;
import jakarta.xml.bind.JAXBException;
import org.xml.sax.SAXException;
import javax.xml.parsers.ParserConfigurationException;
import java.io.IOException;
import java.util.List;
import java.util.Map;
import java.util.UUID;
public interface PrefillingService {
List<Prefilling> getPrefillings(PrefillingLookup like);
Description getPrefilledDescription(DescriptionProfilingRequest model) throws JAXBException, ParserConfigurationException, IOException, InstantiationException, IllegalAccessException, SAXException;
Description getPrefilledDescriptionUsingData(DescriptionProfilingWithDataRequest model) throws JAXBException, ParserConfigurationException, IOException, InstantiationException, IllegalAccessException, SAXException;
}

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@ -0,0 +1,416 @@
package eu.eudat.service.prefilling;
import com.fasterxml.jackson.databind.JsonNode;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.eudat.authorization.AuthorizationFlags;
import eu.eudat.commons.JsonHandlingService;
import eu.eudat.commons.XmlHandlingService;
import eu.eudat.commons.enums.FieldType;
import eu.eudat.commons.types.descriptiontemplate.FieldEntity;
import eu.eudat.commons.types.descriptiontemplate.fielddata.AutoCompleteDataEntity;
import eu.eudat.commons.types.descriptiontemplate.fielddata.ComboBoxDataEntity;
import eu.eudat.commons.types.descriptiontemplate.fielddata.LicenseDataEntity;
import eu.eudat.commons.types.descriptiontemplate.fielddata.WordListDataEntity;
import eu.eudat.commons.types.prefilling.PrefillingEntity;
import eu.eudat.commons.validation.ValidatorFactory;
import eu.eudat.convention.ConventionService;
import eu.eudat.data.DescriptionTemplateEntity;
import eu.eudat.data.ReferenceEntity;
import eu.eudat.file.transformer.utils.helpers.StreamDistinctBy;
import eu.eudat.model.*;
import eu.eudat.model.builder.DescriptionTemplateBuilder;
import eu.eudat.model.builder.PrefillingBuilder;
import eu.eudat.model.builder.ReferenceBuilder;
import eu.eudat.model.descriptionproperties.Field;
import eu.eudat.model.descriptionproperties.PropertyDefinition;
import eu.eudat.model.persist.DescriptionProfilingRequest;
import eu.eudat.model.persist.DescriptionProfilingWithDataRequest;
import eu.eudat.query.ReferenceQuery;
import eu.eudat.service.remotefetcher.ExternalUrlConfigProvider;
import eu.eudat.service.remotefetcher.RemoteFetcherService;
import eu.eudat.service.remotefetcher.config.entities.*;
import eu.eudat.service.remotefetcher.criteria.ExternalReferenceCriteria;
import gr.cite.tools.data.builder.BuilderFactory;
import gr.cite.tools.data.query.QueryFactory;
import gr.cite.tools.exception.MyApplicationException;
import gr.cite.tools.exception.MyNotFoundException;
import gr.cite.tools.fieldset.BaseFieldSet;
import gr.cite.tools.logging.LoggerService;
import gr.cite.tools.logging.MapLogEntry;
import jakarta.persistence.EntityManager;
import jakarta.xml.bind.JAXBException;
import org.json.JSONObject;
import org.slf4j.LoggerFactory;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.context.MessageSource;
import org.springframework.context.i18n.LocaleContextHolder;
import org.springframework.http.HttpEntity;
import org.springframework.http.HttpHeaders;
import org.springframework.http.HttpMethod;
import org.springframework.http.MediaType;
import org.springframework.stereotype.Service;
import org.springframework.web.client.RestTemplate;
import org.xml.sax.SAXException;
import javax.xml.parsers.ParserConfigurationException;
import java.io.IOException;
import java.time.LocalDate;
import java.time.format.DateTimeFormatter;
import java.util.*;
import java.util.stream.Collectors;
@Service
public class PrefillingServiceImpl implements PrefillingService {
private final static String Zenodo = "zenodo";
private static final LoggerService logger = new LoggerService(LoggerFactory.getLogger(PrefillingServiceImpl.class));
private final EntityManager entityManager;
private final BuilderFactory builderFactory;
private final QueryFactory queryFactory;
private final ConventionService conventionService;
private final MessageSource messageSource;
private final RemoteFetcherService remoteFetcherService;
private final JsonHandlingService jsonHandlingService;
private final ExternalUrlConfigProvider externalUrlConfigProvider;
private final XmlHandlingService xmlHandlingService;
private final ValidatorFactory validatorFactory;
@Autowired
public PrefillingServiceImpl(
EntityManager entityManager,
BuilderFactory builderFactory,
QueryFactory queryFactory,
ConventionService conventionService,
MessageSource messageSource,
RemoteFetcherService remoteFetcherService,
JsonHandlingService jsonHandlingService,
ExternalUrlConfigProvider externalUrlConfigProvider,
XmlHandlingService xmlHandlingService,
ValidatorFactory validatorFactory) {
this.entityManager = entityManager;
this.builderFactory = builderFactory;
this.queryFactory = queryFactory;
this.conventionService = conventionService;
this.messageSource = messageSource;
this.remoteFetcherService = remoteFetcherService;
this.jsonHandlingService = jsonHandlingService;
this.externalUrlConfigProvider = externalUrlConfigProvider;
this.xmlHandlingService = xmlHandlingService;
this.validatorFactory = validatorFactory;
}
@Override
public List<Prefilling> getPrefillings(PrefillingLookup lookup) {
logger.debug(new MapLogEntry("persisting data").And("lookup", lookup));
ExternalReferenceCriteria externalReferenceCriteria = new ExternalReferenceCriteria();
externalReferenceCriteria.setLike(lookup.getLike());
List<PrefillingEntity> prefillings = new ArrayList<>();
List<Map<String, String>> map;
Map<String, PrefillingConfig> prefillingConfigs = this.externalUrlConfigProvider.getExternalUrls().getPrefillings();
for (PrefillingConfig prefillingConfig: prefillingConfigs.values()) {
map = remoteFetcherService.getExternalGeneric(externalReferenceCriteria, prefillingConfig.getPrefillingSearch());
prefillings.addAll(map.stream().map(submap -> PrefillingEntity.build(submap, this.jsonHandlingService)).toList());
if (prefillingConfig.getPrefillingSearch().getUrlConfig().isDataInListing()) {
List<Map<String, Object>> mapData = remoteFetcherService.getExternalGenericWithData(externalReferenceCriteria, prefillingConfig.getPrefillingSearch());
for (int i = 0; i < mapData.size(); i++) {
prefillings.get(i).setData(mapData.get(i));
}
prefillings = prefillings.stream().filter(prefilling -> prefilling.getData() != null).collect(Collectors.toList());
}
}
return this.builderFactory.builder(PrefillingBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(BaseFieldSet.build(lookup.getProject(), Prefilling._pid), prefillings);
}
@Override
public Description getPrefilledDescription(DescriptionProfilingRequest model) throws JAXBException, ParserConfigurationException, IOException, InstantiationException, IllegalAccessException, SAXException {
PrefillingConfig prefillingConfig = this.externalUrlConfigProvider.getExternalUrls().getPrefillings().get(model.getConfigId());
PrefillingGet prefillingGet = prefillingConfig.getPrefillingGet();
Map<String, Object> prefillingEntity = getSinglePrefillingData(prefillingGet.getUrl(), model.getPrefillId());
DescriptionProfilingWithDataRequest descriptionProfilingWithDataRequest = new DescriptionProfilingWithDataRequest();
descriptionProfilingWithDataRequest.setConfigId(model.getConfigId());
descriptionProfilingWithDataRequest.setProject(model.getProject());
descriptionProfilingWithDataRequest.setDescriptionTemplateId(model.getDescriptionTemplateId());
descriptionProfilingWithDataRequest.setData(prefillingEntity);
validatorFactory.validator(DescriptionProfilingWithDataRequest.DescriptionProfilingWithDataRequestValidator.ValidatorName).validateForce(descriptionProfilingWithDataRequest);
return this.getPrefilledDescriptionUsingData(descriptionProfilingWithDataRequest);
}
private Map<String, Object> getSinglePrefillingData(String url, String id) {
RestTemplate restTemplate = new RestTemplate();
String parsedUrl = url.replace("{id}", id);
HttpHeaders headers = new HttpHeaders();
headers.setAccept(Collections.singletonList(MediaType.APPLICATION_JSON));
HttpEntity<String> entity = new HttpEntity("", headers);
return restTemplate.exchange(parsedUrl, HttpMethod.GET, entity, LinkedHashMap.class).getBody();
}
@Override
public Description getPrefilledDescriptionUsingData(DescriptionProfilingWithDataRequest model) throws JAXBException, ParserConfigurationException, IOException, InstantiationException, IllegalAccessException, SAXException {
PrefillingConfig prefillingConfig = this.externalUrlConfigProvider.getExternalUrls().getPrefillings().get(model.getConfigId());
PrefillingGet prefillingGet = prefillingConfig.getPrefillingGet();
DescriptionTemplateEntity descriptionTemplateEntity = this.entityManager.find(DescriptionTemplateEntity.class, model.getDescriptionTemplateId());
if (descriptionTemplateEntity == null) throw new MyNotFoundException(messageSource.getMessage("General_ItemNotFound", new Object[]{model.getDescriptionTemplateId(), DescriptionTemplate.class.getSimpleName()}, LocaleContextHolder.getLocale()));
eu.eudat.commons.types.descriptiontemplate.DefinitionEntity descriptionTemplateDefinition = this.xmlHandlingService.fromXml(eu.eudat.commons.types.descriptiontemplate.DefinitionEntity.class, descriptionTemplateEntity.getDefinition());
Description description = new Description();
description.setDescriptionTemplate(this.builderFactory.builder(DescriptionTemplateBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(model.getProject(), descriptionTemplateEntity));
return mapPrefilledEntityToDescription(description, model.getData(), prefillingGet, prefillingConfig.getType(), descriptionTemplateDefinition);
}
//region Description Mapping
private Object getValueFromPath(Map<String, Object> data, String path){
if (path == null || this.conventionService.isNullOrEmpty(path) || data == null) return null;
if (path.contains(".")){
String[] paths = path.split("\\.");
if (paths.length == 0) return null;
else {
Object value = data.getOrDefault(paths[0], null);
if (value instanceof Map) return this.getValueFromPath((Map) value, path.substring(paths[0].length() + 1));
else return null;
}
}else {
return data.getOrDefault(path, null);
}
}
private Description mapPrefilledEntityToDescription(Description description, Map<String, Object> prefilledData, PrefillingGet prefillingGet, String type, eu.eudat.commons.types.descriptiontemplate.DefinitionEntity descriptionTemplateDefinition){
for (DefaultPrefillingMapping prefillingMapping: prefillingGet.getMappings()) {
Object sourceValue = this.getValueFromPath(prefilledData, prefillingMapping.getSource());
try {
setValueToDescription(description, prefillingMapping, sourceValue, descriptionTemplateDefinition, type);
}
catch (Exception e) {
logger.warn("Couldn't map " + (this.conventionService.isNullOrEmpty(prefillingMapping.getSemanticTarget()) ? prefillingMapping.getTarget() : prefillingMapping.getSemanticTarget()));
}
}
for (PrefillingFixedMapping fixedMapping: prefillingGet.getFixedMappings()) {
try {
setValueToDescription(description, fixedMapping, fixedMapping.getValue(), descriptionTemplateDefinition, type);
}
catch (Exception e) {
logger.warn("Couldn't map " + (this.conventionService.isNullOrEmpty(fixedMapping.getSemanticTarget()) ? fixedMapping.getTarget() : fixedMapping.getSemanticTarget()));
}
}
return description;
}
private void setValueToDescription(Description description, PrefillingMapping prefillingMapping, Object value, eu.eudat.commons.types.descriptiontemplate.DefinitionEntity definition, String type) {
JsonNode valueNode = new ObjectMapper().valueToTree(value);
String parsedValue = this.getValueAsString(prefillingMapping, valueNode);
List<String> parsedValues = this.getValueAsStringArray(prefillingMapping, valueNode);
if (prefillingMapping.getTarget() != null) {
this.applyValueToDescriptionObject(description, prefillingMapping, parsedValue, parsedValues);
} else {
// zenodo prefilling customizations
if(type.equals(PrefillingServiceImpl.Zenodo)){
if(prefillingMapping.getSemanticTarget().equals("rda.dataset.distribution.data_access")){
if(parsedValue != null && parsedValue.equals("open")){
List<FieldEntity> issuedFieldEntities = definition.getAllField().stream().filter(x-> x.getSchematics() != null && x.getSchematics().contains("rda.dataset.issued")).toList();
if(this.conventionService.isListNullOrEmpty(issuedFieldEntities)){
String issuedIdNode = issuedFieldEntities.getFirst().getId();
String issuedValue = description.getProperties().getFields().stream().filter(x-> x.getKey().equals(issuedIdNode)).map(Field::getValue).findFirst().orElse(null);//TODO
List<FieldEntity> licStartEntities = definition.getAllField().stream().filter(x-> x.getSchematics() != null && x.getSchematics().contains("rda.dataset.distribution.license.start_date")).toList();
if(this.conventionService.isListNullOrEmpty(licStartEntities)) {
for (FieldEntity licStartDateNode : licStartEntities) {
String licStartDateId = licStartDateNode.getId();
Field field = new Field();
field.setKey(licStartDateId);
field.setValue(issuedValue);
description.getProperties().getFields().add(field);
}
}
}
}
}
if (prefillingMapping.getSemanticTarget().equals("rda.dataset.distribution.available_until") && parsedValue != null && !parsedValue.equals("null")) {
DateTimeFormatter formatter = DateTimeFormatter.ofPattern("uuuu-MM-dd");
LocalDate date = LocalDate.parse(parsedValue, formatter);
date = date.plusYears(20);
parsedValue = date.toString();
}
}
List<FieldEntity> fieldEntities = definition.getAllField().stream().filter(x-> x.getSchematics() != null && x.getSchematics().contains(prefillingMapping.getSemanticTarget())).toList();
for (FieldEntity fieldEntity: fieldEntities) {
if (description.getProperties() == null) description.setProperties(new PropertyDefinition());
if (description.getProperties().getFields() == null) description.getProperties().setFields(new ArrayList<>());
description.getProperties().getFields().add(buildFieldValue(fieldEntity, parsedValue, parsedValues, type));
}
}
}
private void applyValueToDescriptionObject(Description description, PrefillingMapping prefillingMapping, String parsedValue, List<String> parsedValues){
switch (prefillingMapping.getTarget()){
case Description._description:{
description.setDescription(parsedValue);
}
case Description._label:{
description.setLabel(parsedValue);
}
case Description._descriptionTags:{
if (!parsedValues.isEmpty()){
for (String tagString : parsedValues){
if (description.getDescriptionTags() == null) description.setDescriptionTags(new ArrayList<>());
if(description.getDescriptionTags().stream().anyMatch(x-> x.getTag() !=null && x.getTag().getLabel().equals(tagString))) continue;
DescriptionTag descriptionTag = new DescriptionTag();
Tag tag = new Tag();
tag.setLabel(tagString.trim());
descriptionTag.setTag(tag);
description.getDescriptionTags().add(descriptionTag);
}
}
}
}
}
private Field buildFieldValue(FieldEntity fieldEntity, String parsedValue, List<String> parsedValues, String type){
String id = fieldEntity.getId();
Field field = new Field();
field.setKey(id);
switch (fieldEntity.getData().getFieldType()) {
case COMBO_BOX:
case AUTO_COMPLETE:
case WORD_LIST: {
if (!parsedValues.stream().allMatch(Objects::isNull)) {
field.setValue(this.jsonHandlingService.toJsonSafe(parseComboBoxValues(fieldEntity, parsedValues)));
}
break;
}
case TAGS: {
if (!parsedValues.isEmpty()) {
field.setValue(jsonHandlingService.toJsonSafe(parseTags(String.join(", ", parsedValues))));
}
break;
}
case DATASET_IDENTIFIER: {
JSONObject datasetID = new JSONObject();
datasetID.put("identifier", parsedValue);
if (type.equals(PrefillingServiceImpl.Zenodo)) {
datasetID.put("type", "doi");
}
field.setValue(datasetID.toString());
break;
}
case LICENSES: {
List<ReferenceEntity> licenses = this.queryFactory.query(ReferenceQuery.class).references(parsedValues).collect();
LicenseDataEntity wordListDataEntity = (LicenseDataEntity) fieldEntity.getData();
if (licenses != null && !licenses.isEmpty() && wordListDataEntity != null) {
boolean isMultiAutocomplete = wordListDataEntity.getMultiAutoComplete();
List<Reference> licenseModels = this.builderFactory.builder(ReferenceBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(new BaseFieldSet(), licenses);
if (isMultiAutocomplete) {
field.setValue(jsonHandlingService.toJsonSafe(licenseModels));
} else {
field.setValue(jsonHandlingService.toJsonSafe(licenseModels.getFirst()));
}
}
break;
}
default:
field.setValue(parsedValue);
break;
}
return field;
}
private List<String> getValueAsStringArray(PrefillingMapping prefillingMapping, Object value){
String trimRegex = !this.conventionService.isNullOrEmpty(prefillingMapping.getTrimRegex()) ? prefillingMapping.getTrimRegex() : "";
List<String> parsedValues = new ArrayList<>();
if (value instanceof String){
parsedValues.add(((String) value).replace(trimRegex, ""));
} else if (value.getClass().isArray()){
if (value instanceof String[]){
List<String> values = new LinkedList<>();
for (String val : (String[]) value) {
parsedValues.add(val.replace(trimRegex, ""));
}
} else {
if (prefillingMapping.getSubSource() == null || prefillingMapping.getSubSource().isEmpty()) {
throw new MyApplicationException("Source value is an array but no subSource field have been set");
}
for (Object obj : (Object[]) value) {
if (obj instanceof Map) {
Object property = ((Map)obj).getOrDefault(prefillingMapping.getSubSource(), null);
if (property instanceof String) {
parsedValues.add(((String) property).replaceAll(trimRegex, ""));
}
}
}
}
}
parsedValues = parsedValues.stream().distinct().collect(Collectors.toList());
return parsedValues;
}
private String getValueAsString(PrefillingMapping prefillingMapping, Object value){
List<String> parsedValues = this.getValueAsStringArray(prefillingMapping, value);
return parsedValues.isEmpty() ? null : String.join(", ", parsedValues);
}
private Object parseComboBoxValues(FieldEntity fieldEntity, List<String> parsedValues) {
List<String> normalizedValues = new ArrayList<>();
boolean isMultiSelect;
if(fieldEntity.getData().getFieldType().equals(FieldType.AUTO_COMPLETE)) {
AutoCompleteDataEntity autoCompleteData = (AutoCompleteDataEntity)fieldEntity.getData();
isMultiSelect = autoCompleteData.getMultiAutoComplete();
// for (String format : parsedValues) {
// List<ExternalAutocompleteFieldModel> result = new ArrayList<>();
// try {
// result = datasetProfileManager.getAutocomplete(autoCompleteData, format);
// }
// catch (Exception e) {
// logger.error(e.getMessage(), e);
// }
// result = result.stream().filter(StreamDistinctBy.distinctByKey(ExternalAutocompleteFieldModel::getId)).collect(Collectors.toList());
// if(!result.isEmpty()){
// List<String> tempValues = new LinkedList<>();
// for (ExternalAutocompleteFieldModel f : result) {
// if (format.equals(f.getId()) || f.getLabel().toUpperCase(Locale.ROOT).contains(format.toUpperCase(Locale.ROOT)))
// tempValues.add(mapper.valueToTree(f).toString());
// }
// if (isMultiSelect)
// normalizedValues.addAll(tempValues);
// else if (!tempValues.isEmpty())
// normalizedValues.add(tempValues.get(0));
// }
// }
return !normalizedValues.isEmpty() ? (isMultiSelect ? normalizedValues : normalizedValues.getFirst()) : null;
} else {
WordListDataEntity wordListDataEntity = (WordListDataEntity)fieldEntity.getData();
isMultiSelect = wordListDataEntity.getMultiList();
if (wordListDataEntity.getOptions() != null) {
for (ComboBoxDataEntity.Option option : wordListDataEntity.getOptions()) {
if (parsedValues.contains(option.getValue())) {
normalizedValues.add(option.getValue());
}
}
}
List<String> normalizedStringValues = normalizedValues.stream().map(Object::toString).collect(Collectors.toList());
return !normalizedValues.isEmpty() ? (isMultiSelect ? String.join(", ", normalizedStringValues) : normalizedValues.getFirst()) : null;
}
}
private static List<Tag> parseTags(String value) {
if (value == null || value.isEmpty())
return new LinkedList<>();
String[] rawTags = value.split(",");
List<Tag> parsedTags = new LinkedList<>();
for (String rawTag : rawTags) {
Tag tag = new Tag();
tag.setLabel(rawTag.trim());
parsedTags.add(tag);
}
return parsedTags;
}
//endregion aa
}

View File

@ -1,6 +1,6 @@
package eu.eudat.service.reference; package eu.eudat.service.reference;
import eu.eudat.service.reference.external.criteria.ExternalReferenceCriteria; import eu.eudat.service.remotefetcher.criteria.ExternalReferenceCriteria;
import gr.cite.tools.cache.CacheService; import gr.cite.tools.cache.CacheService;
import org.springframework.beans.factory.annotation.Autowired; import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.stereotype.Service; import org.springframework.stereotype.Service;

View File

@ -29,10 +29,10 @@ import eu.eudat.query.ReferenceQuery;
import eu.eudat.query.ReferenceTypeQuery; import eu.eudat.query.ReferenceTypeQuery;
import eu.eudat.query.lookup.ReferenceDefinitionSearchLookup; import eu.eudat.query.lookup.ReferenceDefinitionSearchLookup;
import eu.eudat.query.lookup.ReferenceSearchLookup; import eu.eudat.query.lookup.ReferenceSearchLookup;
import eu.eudat.service.reference.external.RemoteFetcher; import eu.eudat.service.remotefetcher.RemoteFetcherService;
import eu.eudat.service.reference.external.criteria.ExternalReferenceCriteria; import eu.eudat.service.remotefetcher.criteria.ExternalReferenceCriteria;
import eu.eudat.service.reference.external.criteria.FetchStrategy; import eu.eudat.service.remotefetcher.criteria.FetchStrategy;
import eu.eudat.service.reference.external.models.ExternalRefernceResult; import eu.eudat.service.remotefetcher.models.ExternalRefernceResult;
import gr.cite.commons.web.authz.service.AuthorizationService; import gr.cite.commons.web.authz.service.AuthorizationService;
import gr.cite.tools.data.builder.BuilderFactory; import gr.cite.tools.data.builder.BuilderFactory;
import gr.cite.tools.data.deleter.DeleterFactory; import gr.cite.tools.data.deleter.DeleterFactory;
@ -74,7 +74,7 @@ import java.util.stream.Collectors;
public class ReferenceServiceImpl implements ReferenceService { public class ReferenceServiceImpl implements ReferenceService {
private static final LoggerService logger = new LoggerService(LoggerFactory.getLogger(ReferenceServiceImpl.class)); private static final LoggerService logger = new LoggerService(LoggerFactory.getLogger(ReferenceServiceImpl.class));
private final RemoteFetcher remoteFetcher; private final RemoteFetcherService remoteFetcherService;
private final EntityManager entityManager; private final EntityManager entityManager;
private final AuthorizationService authorizationService; private final AuthorizationService authorizationService;
private final DeleterFactory deleterFactory; private final DeleterFactory deleterFactory;
@ -86,16 +86,16 @@ public class ReferenceServiceImpl implements ReferenceService {
private final WebClient client; private final WebClient client;
public ReferenceServiceImpl(RemoteFetcher remoteFetcher, public ReferenceServiceImpl(RemoteFetcherService remoteFetcherService,
EntityManager entityManager, EntityManager entityManager,
AuthorizationService authorizationService, AuthorizationService authorizationService,
DeleterFactory deleterFactory, DeleterFactory deleterFactory,
BuilderFactory builderFactory, BuilderFactory builderFactory,
ConventionService conventionService, ConventionService conventionService,
MessageSource messageSource, MessageSource messageSource,
QueryFactory queryFactory, QueryFactory queryFactory,
XmlHandlingService xmlHandlingService) { XmlHandlingService xmlHandlingService) {
this.remoteFetcher = remoteFetcher; this.remoteFetcherService = remoteFetcherService;
this.entityManager = entityManager; this.entityManager = entityManager;
this.authorizationService = authorizationService; this.authorizationService = authorizationService;
this.deleterFactory = deleterFactory; this.deleterFactory = deleterFactory;
@ -205,7 +205,7 @@ public class ReferenceServiceImpl implements ReferenceService {
ExternalReferenceCriteria externalReferenceCriteria = new ExternalReferenceCriteria(lookup.getLike()); ExternalReferenceCriteria externalReferenceCriteria = new ExternalReferenceCriteria(lookup.getLike());
List<Map<String, String>> remoteRepos = remoteFetcher.getReferences(lookup.getType(), externalReferenceCriteria, lookup.getKey()); List<Map<String, String>> remoteRepos = remoteFetcherService.getReferences(lookup.getType(), externalReferenceCriteria, lookup.getKey());
List<Reference> externalModels = this.builderFactory.builder(ReferenceSearchBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(lookup.getProject(), remoteRepos); List<Reference> externalModels = this.builderFactory.builder(ReferenceSearchBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(lookup.getProject(), remoteRepos);
List<Reference> models = this.fetchFromDb(lookup); List<Reference> models = this.fetchFromDb(lookup);

View File

@ -1,12 +0,0 @@
package eu.eudat.service.reference.external.config.entities;
import eu.eudat.service.reference.external.criteria.FetchStrategy;
import eu.eudat.service.reference.external.config.UrlConfiguration;
import java.util.List;
public abstract class GenericUrls {
public abstract List<UrlConfiguration> getUrls();
public abstract FetchStrategy getFetchMode();
}

View File

@ -1,35 +0,0 @@
package eu.eudat.service.reference.external.config.entities;
import eu.eudat.service.reference.external.config.entities.GenericUrls;
import eu.eudat.service.reference.external.criteria.FetchStrategy;
import eu.eudat.service.reference.external.config.UrlConfiguration;
import jakarta.xml.bind.annotation.XmlElement;
import jakarta.xml.bind.annotation.XmlElementWrapper;
import java.util.List;
public class RepositoryUrls extends GenericUrls {
List<UrlConfiguration> urls;
FetchStrategy fetchMode;
public List<UrlConfiguration> getUrls() {
return urls;
}
@XmlElementWrapper
@XmlElement(name = "urlConfig")
public void setUrls(List<UrlConfiguration> urls) {
this.urls = urls;
}
public FetchStrategy getFetchMode() {
return fetchMode;
}
@XmlElement(name = "fetchMode")
public void setFetchMode(FetchStrategy fetchMode) {
this.fetchMode = fetchMode;
}
}

View File

@ -1,35 +0,0 @@
package eu.eudat.service.reference.external.config.entities;
import eu.eudat.service.reference.external.config.entities.GenericUrls;
import eu.eudat.service.reference.external.criteria.FetchStrategy;
import eu.eudat.service.reference.external.config.UrlConfiguration;
import jakarta.xml.bind.annotation.XmlElement;
import jakarta.xml.bind.annotation.XmlElementWrapper;
import java.util.List;
public class TaxonomiesUrls extends GenericUrls {
List<UrlConfiguration> urls;
FetchStrategy fetchMode;
public List<UrlConfiguration> getUrls() {
return urls;
}
@XmlElementWrapper
@XmlElement(name = "urlConfig")
public void setUrls(List<UrlConfiguration> urls) {
this.urls = urls;
}
public FetchStrategy getFetchMode() {
return fetchMode;
}
@XmlElement(name = "fetchMode")
public void setFetchMode(FetchStrategy fetchMode) {
this.fetchMode = fetchMode;
}
}

View File

@ -1,8 +0,0 @@
package eu.eudat.service.reference.external.criteria;
public enum FetchStrategy {
FIRST,
ALL
}

View File

@ -1,6 +1,6 @@
package eu.eudat.service.reference.external; package eu.eudat.service.remotefetcher;
import eu.eudat.service.reference.external.config.ExternalUrls; import eu.eudat.service.remotefetcher.config.ExternalUrls;
import eu.eudat.service.storage.StorageFileService; import eu.eudat.service.storage.StorageFileService;
import jakarta.xml.bind.JAXBContext; import jakarta.xml.bind.JAXBContext;
import jakarta.xml.bind.Unmarshaller; import jakarta.xml.bind.Unmarshaller;

View File

@ -0,0 +1,22 @@
package eu.eudat.service.remotefetcher;
import eu.eudat.commons.enums.ReferenceType;
import eu.eudat.commons.exceptions.HugeResultSetException;
import eu.eudat.service.remotefetcher.config.entities.GenericUrls;
import eu.eudat.service.remotefetcher.criteria.ExternalReferenceCriteria;
import gr.cite.tools.exception.MyNotFoundException;
import java.util.List;
import java.util.Map;
public interface RemoteFetcherService {
List<Map<String, String>> getReferences(ReferenceType referenceType, ExternalReferenceCriteria externalReferenceCriteria, String key) throws MyNotFoundException, HugeResultSetException;
GenericUrls getExternalUrls(ReferenceType referenceType);
Integer countEntries(ExternalReferenceCriteria externalReferenceCriteria, String key) throws MyNotFoundException, HugeResultSetException;
List<Map<String, String>> getExternalGeneric(ExternalReferenceCriteria externalReferenceCriteria, GenericUrls genericUrls);
List<Map<String, Object>> getExternalGenericWithData(ExternalReferenceCriteria externalReferenceCriteria, GenericUrls genericUrls);
}

View File

@ -1,4 +1,4 @@
package eu.eudat.service.reference.external; package eu.eudat.service.remotefetcher;
import com.fasterxml.jackson.core.type.TypeReference; import com.fasterxml.jackson.core.type.TypeReference;
import com.fasterxml.jackson.databind.JsonNode; import com.fasterxml.jackson.databind.JsonNode;
@ -7,11 +7,14 @@ import com.jayway.jsonpath.DocumentContext;
import com.jayway.jsonpath.JsonPath; import com.jayway.jsonpath.JsonPath;
import eu.eudat.commons.enums.ReferenceType; import eu.eudat.commons.enums.ReferenceType;
import eu.eudat.commons.exceptions.HugeResultSetException; import eu.eudat.commons.exceptions.HugeResultSetException;
import eu.eudat.service.reference.external.config.*; import eu.eudat.service.remotefetcher.config.AuthenticationConfiguration;
import eu.eudat.service.reference.external.config.entities.GenericUrls; import eu.eudat.service.remotefetcher.config.DataUrlConfiguration;
import eu.eudat.service.reference.external.models.ExternalRefernceResult; import eu.eudat.service.remotefetcher.config.QueryConfig;
import eu.eudat.service.reference.external.criteria.ExternalReferenceCriteria; import eu.eudat.service.remotefetcher.config.UrlConfiguration;
import eu.eudat.service.reference.external.criteria.FetchStrategy; import eu.eudat.service.remotefetcher.config.entities.GenericUrls;
import eu.eudat.service.remotefetcher.models.ExternalRefernceResult;
import eu.eudat.service.remotefetcher.criteria.ExternalReferenceCriteria;
import eu.eudat.service.remotefetcher.criteria.FetchStrategy;
import gr.cite.tools.exception.MyNotFoundException; import gr.cite.tools.exception.MyNotFoundException;
import jakarta.xml.bind.JAXBContext; import jakarta.xml.bind.JAXBContext;
import jakarta.xml.bind.Unmarshaller; import jakarta.xml.bind.Unmarshaller;
@ -35,13 +38,13 @@ import java.util.*;
import java.util.stream.Collectors; import java.util.stream.Collectors;
@Service @Service
public class RemoteFetcher { public class RemoteFetcherServiceImpl implements RemoteFetcherService {
private static final Logger logger = LoggerFactory.getLogger(RemoteFetcher.class); private static final Logger logger = LoggerFactory.getLogger(RemoteFetcherServiceImpl.class);
private WebClient webClient; private WebClient webClient;
private final ExternalUrlConfigProvider externalUrlConfigProvider; private final ExternalUrlConfigProvider externalUrlConfigProvider;
@Autowired @Autowired
public RemoteFetcher(ExternalUrlConfigProvider externalUrlConfigProvider) { public RemoteFetcherServiceImpl(ExternalUrlConfigProvider externalUrlConfigProvider) {
this.externalUrlConfigProvider = externalUrlConfigProvider; this.externalUrlConfigProvider = externalUrlConfigProvider;
} }
@ -56,6 +59,7 @@ public class RemoteFetcher {
return webClient; return webClient;
} }
@Override
public List<Map<String, String>> getReferences(ReferenceType referenceType, ExternalReferenceCriteria externalReferenceCriteria, String key) throws MyNotFoundException, HugeResultSetException { public List<Map<String, String>> getReferences(ReferenceType referenceType, ExternalReferenceCriteria externalReferenceCriteria, String key) throws MyNotFoundException, HugeResultSetException {
FetchStrategy fetchStrategy = null; FetchStrategy fetchStrategy = null;
GenericUrls exGenericUrls = this.getExternalUrls(referenceType); GenericUrls exGenericUrls = this.getExternalUrls(referenceType);
@ -69,6 +73,7 @@ public class RemoteFetcher {
return results; return results;
} }
@Override
public GenericUrls getExternalUrls(ReferenceType referenceType) { public GenericUrls getExternalUrls(ReferenceType referenceType) {
return switch (referenceType) { return switch (referenceType) {
case Taxonomies -> this.externalUrlConfigProvider.getExternalUrls().getTaxonomies(); case Taxonomies -> this.externalUrlConfigProvider.getExternalUrls().getTaxonomies();
@ -89,6 +94,7 @@ public class RemoteFetcher {
}; };
} }
@Override
public Integer countEntries(ExternalReferenceCriteria externalReferenceCriteria, String key) throws MyNotFoundException, HugeResultSetException { public Integer countEntries(ExternalReferenceCriteria externalReferenceCriteria, String key) throws MyNotFoundException, HugeResultSetException {
List<UrlConfiguration> urlConfigs = List<UrlConfiguration> urlConfigs =
key != null && !key.isEmpty() ? this.externalUrlConfigProvider.getExternalUrls().getValidations().getUrls().stream().filter(item -> item.getKey().equals(key)).collect(Collectors.toList()) key != null && !key.isEmpty() ? this.externalUrlConfigProvider.getExternalUrls().getValidations().getUrls().stream().filter(item -> item.getKey().equals(key)).collect(Collectors.toList())
@ -98,12 +104,14 @@ public class RemoteFetcher {
return data.size(); return data.size();
} }
@Override
public List<Map<String, String>> getExternalGeneric(ExternalReferenceCriteria externalReferenceCriteria, GenericUrls genericUrls) { public List<Map<String, String>> getExternalGeneric(ExternalReferenceCriteria externalReferenceCriteria, GenericUrls genericUrls) {
List<UrlConfiguration> urlConfigurations = genericUrls.getUrls(); List<UrlConfiguration> urlConfigurations = genericUrls.getUrls();
FetchStrategy fetchStrategy = genericUrls.getFetchMode(); FetchStrategy fetchStrategy = genericUrls.getFetchMode();
return getAll(urlConfigurations, fetchStrategy, externalReferenceCriteria); return getAll(urlConfigurations, fetchStrategy, externalReferenceCriteria);
} }
@Override
public List<Map<String, Object>> getExternalGenericWithData(ExternalReferenceCriteria externalReferenceCriteria, GenericUrls genericUrls) { public List<Map<String, Object>> getExternalGenericWithData(ExternalReferenceCriteria externalReferenceCriteria, GenericUrls genericUrls) {
List<UrlConfiguration> urlConfigurations = genericUrls.getUrls(); List<UrlConfiguration> urlConfigurations = genericUrls.getUrls();
return getAllWithData(urlConfigurations, externalReferenceCriteria); return getAllWithData(urlConfigurations, externalReferenceCriteria);

View File

@ -1,10 +1,10 @@
package eu.eudat.service.reference.external; package eu.eudat.service.remotefetcher;
import com.fasterxml.jackson.databind.ObjectMapper; import com.fasterxml.jackson.databind.ObjectMapper;
import com.jayway.jsonpath.DocumentContext; import com.jayway.jsonpath.DocumentContext;
import eu.eudat.service.reference.external.config.DataUrlConfiguration; import eu.eudat.service.remotefetcher.config.DataUrlConfiguration;
import eu.eudat.service.reference.external.criteria.ExternalReferenceCriteria; import eu.eudat.service.remotefetcher.criteria.ExternalReferenceCriteria;
import eu.eudat.service.reference.external.models.ExternalRefernceResult; import eu.eudat.service.remotefetcher.models.ExternalRefernceResult;
import net.minidev.json.JSONArray; import net.minidev.json.JSONArray;
import org.slf4j.Logger; import org.slf4j.Logger;
import org.slf4j.LoggerFactory; import org.slf4j.LoggerFactory;
@ -23,7 +23,7 @@ public class RemoteFetcherUtils {
new HashMap<>(1, 1)); new HashMap<>(1, 1));
} }
public static ExternalRefernceResult getFromJsonWithRecursiveFetching(DocumentContext jsonContext, DataUrlConfiguration jsonDataPath, RemoteFetcher remoteFetcher, String requestBody, String requestType, String auth) { public static ExternalRefernceResult getFromJsonWithRecursiveFetching(DocumentContext jsonContext, DataUrlConfiguration jsonDataPath, RemoteFetcherServiceImpl remoteFetcherService, String requestBody, String requestType, String auth) {
ExternalRefernceResult externalRefernceResult = new ExternalRefernceResult(parseData(jsonContext, jsonDataPath), ExternalRefernceResult externalRefernceResult = new ExternalRefernceResult(parseData(jsonContext, jsonDataPath),
new HashMap<>(1, 1)); new HashMap<>(1, 1));
@ -31,8 +31,8 @@ public class RemoteFetcherUtils {
ExternalReferenceCriteria externalReferenceCriteria = new ExternalReferenceCriteria(); ExternalReferenceCriteria externalReferenceCriteria = new ExternalReferenceCriteria();
externalReferenceCriteria.setPath(result.get("path")); externalReferenceCriteria.setPath(result.get("path"));
externalReferenceCriteria.setHost(result.get("host")); externalReferenceCriteria.setHost(result.get("host"));
String replacedPath = remoteFetcher.replaceCriteriaOnUrl(jsonDataPath.getUrlConfiguration().getUrl(), externalReferenceCriteria, jsonDataPath.getUrlConfiguration().getFirstpage(), jsonDataPath.getUrlConfiguration().getQueries()); String replacedPath = remoteFetcherService.replaceCriteriaOnUrl(jsonDataPath.getUrlConfiguration().getUrl(), externalReferenceCriteria, jsonDataPath.getUrlConfiguration().getFirstpage(), jsonDataPath.getUrlConfiguration().getQueries());
return remoteFetcher.getResultsFromUrl(replacedPath, jsonDataPath.getUrlConfiguration().getData(), jsonDataPath.getUrlConfiguration().getData().getPath(), jsonDataPath.getUrlConfiguration().getContentType(), requestBody, requestType, auth); return remoteFetcherService.getResultsFromUrl(replacedPath, jsonDataPath.getUrlConfiguration().getData(), jsonDataPath.getUrlConfiguration().getData().getPath(), jsonDataPath.getUrlConfiguration().getContentType(), requestBody, requestType, auth);
}).filter(Objects::nonNull).map(externalRefernceResult1 -> externalRefernceResult1.getResults().get(0)).collect(Collectors.toList()); }).filter(Objects::nonNull).map(externalRefernceResult1 -> externalRefernceResult1.getResults().get(0)).collect(Collectors.toList());
return new ExternalRefernceResult(multiResults, new HashMap<>(1, 1)); return new ExternalRefernceResult(multiResults, new HashMap<>(1, 1));
} }

View File

@ -1,4 +1,4 @@
package eu.eudat.service.reference.external.config; package eu.eudat.service.remotefetcher.config;
import jakarta.xml.bind.annotation.XmlElement; import jakarta.xml.bind.annotation.XmlElement;

View File

@ -1,4 +1,4 @@
package eu.eudat.service.reference.external.config; package eu.eudat.service.remotefetcher.config;
import jakarta.xml.bind.annotation.XmlElement; import jakarta.xml.bind.annotation.XmlElement;

View File

@ -1,6 +1,5 @@
package eu.eudat.service.reference.external.config; package eu.eudat.service.remotefetcher.config;
import eu.eudat.service.reference.external.config.UrlConfiguration;
import jakarta.xml.bind.annotation.XmlElement; import jakarta.xml.bind.annotation.XmlElement;
import jakarta.xml.bind.annotation.XmlElementWrapper; import jakarta.xml.bind.annotation.XmlElementWrapper;
import java.util.List; import java.util.List;

View File

@ -1,9 +1,9 @@
package eu.eudat.service.reference.external.config; package eu.eudat.service.remotefetcher.config;
import eu.eudat.service.reference.external.config.prefilling.PrefillingConfigMapAdapter; import eu.eudat.service.remotefetcher.config.prefilling.PrefillingConfigMapAdapter;
import eu.eudat.service.reference.external.config.entities.*; import eu.eudat.service.remotefetcher.config.entities.*;
import jakarta.xml.bind.annotation.XmlElement; import jakarta.xml.bind.annotation.XmlElement;
import jakarta.xml.bind.annotation.XmlRootElement; import jakarta.xml.bind.annotation.XmlRootElement;
import jakarta.xml.bind.annotation.adapters.XmlJavaTypeAdapter; import jakarta.xml.bind.annotation.adapters.XmlJavaTypeAdapter;

View File

@ -1,4 +1,4 @@
package eu.eudat.service.reference.external.config; package eu.eudat.service.remotefetcher.config;
import jakarta.xml.bind.annotation.XmlElement; import jakarta.xml.bind.annotation.XmlElement;

View File

@ -1,4 +1,4 @@
package eu.eudat.service.reference.external.config; package eu.eudat.service.remotefetcher.config;
import jakarta.xml.bind.annotation.XmlElement; import jakarta.xml.bind.annotation.XmlElement;

View File

@ -1,7 +1,7 @@
package eu.eudat.service.reference.external.config.entities; package eu.eudat.service.remotefetcher.config.entities;
import eu.eudat.service.reference.external.criteria.FetchStrategy; import eu.eudat.service.remotefetcher.criteria.FetchStrategy;
import eu.eudat.service.reference.external.config.UrlConfiguration; import eu.eudat.service.remotefetcher.config.UrlConfiguration;
import jakarta.xml.bind.annotation.XmlElement; import jakarta.xml.bind.annotation.XmlElement;
import jakarta.xml.bind.annotation.XmlElementWrapper; import jakarta.xml.bind.annotation.XmlElementWrapper;

View File

@ -1,4 +1,4 @@
package eu.eudat.service.reference.external.config.entities; package eu.eudat.service.remotefetcher.config.entities;
import jakarta.xml.bind.annotation.XmlAttribute; import jakarta.xml.bind.annotation.XmlAttribute;
import jakarta.xml.bind.annotation.XmlRootElement; import jakarta.xml.bind.annotation.XmlRootElement;

View File

@ -1,7 +1,7 @@
package eu.eudat.service.reference.external.config.entities; package eu.eudat.service.remotefetcher.config.entities;
import eu.eudat.service.reference.external.criteria.FetchStrategy; import eu.eudat.service.remotefetcher.criteria.FetchStrategy;
import eu.eudat.service.reference.external.config.UrlConfiguration; import eu.eudat.service.remotefetcher.config.UrlConfiguration;
import jakarta.xml.bind.annotation.XmlElement; import jakarta.xml.bind.annotation.XmlElement;
import jakarta.xml.bind.annotation.XmlElementWrapper; import jakarta.xml.bind.annotation.XmlElementWrapper;

View File

@ -1,8 +1,7 @@
package eu.eudat.service.reference.external.config.entities; package eu.eudat.service.remotefetcher.config.entities;
import eu.eudat.service.reference.external.config.entities.GenericUrls; import eu.eudat.service.remotefetcher.criteria.FetchStrategy;
import eu.eudat.service.reference.external.criteria.FetchStrategy; import eu.eudat.service.remotefetcher.config.UrlConfiguration;
import eu.eudat.service.reference.external.config.UrlConfiguration;
import java.util.ArrayList; import java.util.ArrayList;
import java.util.List; import java.util.List;

View File

@ -0,0 +1,12 @@
package eu.eudat.service.remotefetcher.config.entities;
import eu.eudat.service.remotefetcher.criteria.FetchStrategy;
import eu.eudat.service.remotefetcher.config.UrlConfiguration;
import java.util.List;
public abstract class GenericUrls {
public abstract List<UrlConfiguration> getUrls();
public abstract FetchStrategy getFetchMode();
}

View File

@ -1,7 +1,7 @@
package eu.eudat.service.reference.external.config.entities; package eu.eudat.service.remotefetcher.config.entities;
import eu.eudat.service.reference.external.criteria.FetchStrategy; import eu.eudat.service.remotefetcher.criteria.FetchStrategy;
import eu.eudat.service.reference.external.config.UrlConfiguration; import eu.eudat.service.remotefetcher.config.UrlConfiguration;
import jakarta.xml.bind.annotation.XmlElement; import jakarta.xml.bind.annotation.XmlElement;
import jakarta.xml.bind.annotation.XmlElementWrapper; import jakarta.xml.bind.annotation.XmlElementWrapper;

View File

@ -1,7 +1,7 @@
package eu.eudat.service.reference.external.config.entities; package eu.eudat.service.remotefetcher.config.entities;
import eu.eudat.service.reference.external.criteria.FetchStrategy; import eu.eudat.service.remotefetcher.criteria.FetchStrategy;
import eu.eudat.service.reference.external.config.UrlConfiguration; import eu.eudat.service.remotefetcher.config.UrlConfiguration;
import jakarta.xml.bind.annotation.XmlElement; import jakarta.xml.bind.annotation.XmlElement;
import jakarta.xml.bind.annotation.XmlElementWrapper; import jakarta.xml.bind.annotation.XmlElementWrapper;

View File

@ -1,7 +1,7 @@
package eu.eudat.service.reference.external.config.entities; package eu.eudat.service.remotefetcher.config.entities;
import eu.eudat.service.reference.external.criteria.FetchStrategy; import eu.eudat.service.remotefetcher.criteria.FetchStrategy;
import eu.eudat.service.reference.external.config.UrlConfiguration; import eu.eudat.service.remotefetcher.config.UrlConfiguration;
import jakarta.xml.bind.annotation.XmlElement; import jakarta.xml.bind.annotation.XmlElement;
import jakarta.xml.bind.annotation.XmlElementWrapper; import jakarta.xml.bind.annotation.XmlElementWrapper;

View File

@ -1,7 +1,7 @@
package eu.eudat.service.reference.external.config.entities; package eu.eudat.service.remotefetcher.config.entities;
import eu.eudat.service.reference.external.criteria.FetchStrategy; import eu.eudat.service.remotefetcher.criteria.FetchStrategy;
import eu.eudat.service.reference.external.config.UrlConfiguration; import eu.eudat.service.remotefetcher.config.UrlConfiguration;
import jakarta.xml.bind.annotation.XmlElement; import jakarta.xml.bind.annotation.XmlElement;
import jakarta.xml.bind.annotation.XmlElementWrapper; import jakarta.xml.bind.annotation.XmlElementWrapper;

View File

@ -1,6 +1,5 @@
package eu.eudat.service.reference.external.config.entities; package eu.eudat.service.remotefetcher.config.entities;
import eu.eudat.service.reference.external.config.entities.PrefillingSearch;
import jakarta.xml.bind.annotation.XmlAttribute; import jakarta.xml.bind.annotation.XmlAttribute;
import jakarta.xml.bind.annotation.XmlElement; import jakarta.xml.bind.annotation.XmlElement;
import jakarta.xml.bind.annotation.XmlRootElement; import jakarta.xml.bind.annotation.XmlRootElement;

View File

@ -1,4 +1,4 @@
package eu.eudat.service.reference.external.config.entities; package eu.eudat.service.remotefetcher.config.entities;
import jakarta.xml.bind.annotation.XmlAttribute; import jakarta.xml.bind.annotation.XmlAttribute;
import jakarta.xml.bind.annotation.XmlRootElement; import jakarta.xml.bind.annotation.XmlRootElement;

View File

@ -1,4 +1,4 @@
package eu.eudat.service.reference.external.config.entities; package eu.eudat.service.remotefetcher.config.entities;
import jakarta.xml.bind.annotation.XmlElement; import jakarta.xml.bind.annotation.XmlElement;
import jakarta.xml.bind.annotation.XmlElementWrapper; import jakarta.xml.bind.annotation.XmlElementWrapper;

View File

@ -1,6 +1,4 @@
package eu.eudat.service.reference.external.config.entities; package eu.eudat.service.remotefetcher.config.entities;
import jakarta.xml.bind.annotation.XmlAttribute;
public interface PrefillingMapping { public interface PrefillingMapping {
String getTarget(); String getTarget();

View File

@ -1,8 +1,7 @@
package eu.eudat.service.reference.external.config.entities; package eu.eudat.service.remotefetcher.config.entities;
import eu.eudat.service.reference.external.config.entities.GenericUrls; import eu.eudat.service.remotefetcher.criteria.FetchStrategy;
import eu.eudat.service.reference.external.criteria.FetchStrategy; import eu.eudat.service.remotefetcher.config.UrlConfiguration;
import eu.eudat.service.reference.external.config.UrlConfiguration;
import jakarta.xml.bind.annotation.XmlElement; import jakarta.xml.bind.annotation.XmlElement;
import java.util.ArrayList; import java.util.ArrayList;

View File

@ -1,7 +1,7 @@
package eu.eudat.service.reference.external.config.entities; package eu.eudat.service.remotefetcher.config.entities;
import eu.eudat.service.reference.external.criteria.FetchStrategy; import eu.eudat.service.remotefetcher.criteria.FetchStrategy;
import eu.eudat.service.reference.external.config.UrlConfiguration; import eu.eudat.service.remotefetcher.config.UrlConfiguration;
import jakarta.xml.bind.annotation.XmlElement; import jakarta.xml.bind.annotation.XmlElement;
import jakarta.xml.bind.annotation.XmlElementWrapper; import jakarta.xml.bind.annotation.XmlElementWrapper;

View File

@ -1,7 +1,7 @@
package eu.eudat.service.reference.external.config.entities; package eu.eudat.service.remotefetcher.config.entities;
import eu.eudat.service.reference.external.criteria.FetchStrategy; import eu.eudat.service.remotefetcher.criteria.FetchStrategy;
import eu.eudat.service.reference.external.config.UrlConfiguration; import eu.eudat.service.remotefetcher.config.UrlConfiguration;
import jakarta.xml.bind.annotation.XmlElement; import jakarta.xml.bind.annotation.XmlElement;
import jakarta.xml.bind.annotation.XmlElementWrapper; import jakarta.xml.bind.annotation.XmlElementWrapper;

View File

@ -1,7 +1,7 @@
package eu.eudat.service.reference.external.config.entities; package eu.eudat.service.remotefetcher.config.entities;
import eu.eudat.service.reference.external.criteria.FetchStrategy; import eu.eudat.service.remotefetcher.criteria.FetchStrategy;
import eu.eudat.service.reference.external.config.UrlConfiguration; import eu.eudat.service.remotefetcher.config.UrlConfiguration;
import jakarta.xml.bind.annotation.XmlElement; import jakarta.xml.bind.annotation.XmlElement;
import jakarta.xml.bind.annotation.XmlElementWrapper; import jakarta.xml.bind.annotation.XmlElementWrapper;

View File

@ -1,7 +1,7 @@
package eu.eudat.service.reference.external.config.entities; package eu.eudat.service.remotefetcher.config.entities;
import eu.eudat.service.reference.external.criteria.FetchStrategy; import eu.eudat.service.remotefetcher.criteria.FetchStrategy;
import eu.eudat.service.reference.external.config.UrlConfiguration; import eu.eudat.service.remotefetcher.config.UrlConfiguration;
import jakarta.xml.bind.annotation.XmlElement; import jakarta.xml.bind.annotation.XmlElement;
import jakarta.xml.bind.annotation.XmlElementWrapper; import jakarta.xml.bind.annotation.XmlElementWrapper;

View File

@ -0,0 +1,34 @@
package eu.eudat.service.remotefetcher.config.entities;
import eu.eudat.service.remotefetcher.criteria.FetchStrategy;
import eu.eudat.service.remotefetcher.config.UrlConfiguration;
import jakarta.xml.bind.annotation.XmlElement;
import jakarta.xml.bind.annotation.XmlElementWrapper;
import java.util.List;
public class RepositoryUrls extends GenericUrls {
List<UrlConfiguration> urls;
FetchStrategy fetchMode;
public List<UrlConfiguration> getUrls() {
return urls;
}
@XmlElementWrapper
@XmlElement(name = "urlConfig")
public void setUrls(List<UrlConfiguration> urls) {
this.urls = urls;
}
public FetchStrategy getFetchMode() {
return fetchMode;
}
@XmlElement(name = "fetchMode")
public void setFetchMode(FetchStrategy fetchMode) {
this.fetchMode = fetchMode;
}
}

View File

@ -1,7 +1,7 @@
package eu.eudat.service.reference.external.config.entities; package eu.eudat.service.remotefetcher.config.entities;
import eu.eudat.service.reference.external.criteria.FetchStrategy; import eu.eudat.service.remotefetcher.criteria.FetchStrategy;
import eu.eudat.service.reference.external.config.UrlConfiguration; import eu.eudat.service.remotefetcher.config.UrlConfiguration;
import jakarta.xml.bind.annotation.XmlElement; import jakarta.xml.bind.annotation.XmlElement;
import jakarta.xml.bind.annotation.XmlElementWrapper; import jakarta.xml.bind.annotation.XmlElementWrapper;

View File

@ -1,7 +1,7 @@
package eu.eudat.service.reference.external.config.entities; package eu.eudat.service.remotefetcher.config.entities;
import eu.eudat.service.reference.external.criteria.FetchStrategy; import eu.eudat.service.remotefetcher.criteria.FetchStrategy;
import eu.eudat.service.reference.external.config.UrlConfiguration; import eu.eudat.service.remotefetcher.config.UrlConfiguration;
import jakarta.xml.bind.annotation.XmlElement; import jakarta.xml.bind.annotation.XmlElement;
import jakarta.xml.bind.annotation.XmlElementWrapper; import jakarta.xml.bind.annotation.XmlElementWrapper;

View File

@ -1,7 +1,7 @@
package eu.eudat.service.reference.external.config.entities; package eu.eudat.service.remotefetcher.config.entities;
import eu.eudat.service.reference.external.criteria.FetchStrategy; import eu.eudat.service.remotefetcher.criteria.FetchStrategy;
import eu.eudat.service.reference.external.config.UrlConfiguration; import eu.eudat.service.remotefetcher.config.UrlConfiguration;
import jakarta.xml.bind.annotation.XmlElement; import jakarta.xml.bind.annotation.XmlElement;
import jakarta.xml.bind.annotation.XmlElementWrapper; import jakarta.xml.bind.annotation.XmlElementWrapper;

View File

@ -0,0 +1,34 @@
package eu.eudat.service.remotefetcher.config.entities;
import eu.eudat.service.remotefetcher.criteria.FetchStrategy;
import eu.eudat.service.remotefetcher.config.UrlConfiguration;
import jakarta.xml.bind.annotation.XmlElement;
import jakarta.xml.bind.annotation.XmlElementWrapper;
import java.util.List;
public class TaxonomiesUrls extends GenericUrls {
List<UrlConfiguration> urls;
FetchStrategy fetchMode;
public List<UrlConfiguration> getUrls() {
return urls;
}
@XmlElementWrapper
@XmlElement(name = "urlConfig")
public void setUrls(List<UrlConfiguration> urls) {
this.urls = urls;
}
public FetchStrategy getFetchMode() {
return fetchMode;
}
@XmlElement(name = "fetchMode")
public void setFetchMode(FetchStrategy fetchMode) {
this.fetchMode = fetchMode;
}
}

View File

@ -1,14 +1,12 @@
package eu.eudat.service.reference.external.config.entities; package eu.eudat.service.remotefetcher.config.entities;
import java.util.List; import java.util.List;
import eu.eudat.service.reference.external.config.entities.GenericUrls; import eu.eudat.service.remotefetcher.config.UrlConfiguration;
import eu.eudat.service.remotefetcher.criteria.FetchStrategy;
import jakarta.xml.bind.annotation.XmlElement; import jakarta.xml.bind.annotation.XmlElement;
import jakarta.xml.bind.annotation.XmlElementWrapper; import jakarta.xml.bind.annotation.XmlElementWrapper;
import eu.eudat.service.reference.external.criteria.FetchStrategy;
import eu.eudat.service.reference.external.config.UrlConfiguration;
public class ValidationUrls extends GenericUrls { public class ValidationUrls extends GenericUrls {
List<UrlConfiguration> urls; List<UrlConfiguration> urls;

View File

@ -1,6 +1,6 @@
package eu.eudat.service.reference.external.config.prefilling; package eu.eudat.service.remotefetcher.config.prefilling;
import eu.eudat.service.reference.external.config.entities.PrefillingConfig; import eu.eudat.service.remotefetcher.config.entities.PrefillingConfig;
import org.w3c.dom.Element; import org.w3c.dom.Element;
import jakarta.xml.bind.JAXBContext; import jakarta.xml.bind.JAXBContext;

View File

@ -1,4 +1,4 @@
package eu.eudat.service.reference.external.criteria; package eu.eudat.service.remotefetcher.criteria;
public class ExternalReferenceCriteria { public class ExternalReferenceCriteria {
private String like; private String like;

View File

@ -0,0 +1,8 @@
package eu.eudat.service.remotefetcher.criteria;
public enum FetchStrategy {
FIRST,
ALL
}

View File

@ -1,4 +1,4 @@
package eu.eudat.service.reference.external.models; package eu.eudat.service.remotefetcher.models;
import java.util.ArrayList; import java.util.ArrayList;
import java.util.HashMap; import java.util.HashMap;

View File

@ -1,6 +1,6 @@
package eu.eudat.configurations.dynamicfunder.entities; package eu.eudat.configurations.dynamicfunder.entities;
import eu.eudat.service.reference.external.config.UrlConfiguration; import eu.eudat.service.remotefetcher.config.UrlConfiguration;
import jakarta.xml.bind.annotation.XmlElement; import jakarta.xml.bind.annotation.XmlElement;
import jakarta.xml.bind.annotation.XmlElementWrapper; import jakarta.xml.bind.annotation.XmlElementWrapper;

View File

@ -1,6 +1,6 @@
package eu.eudat.configurations.dynamicgrant.entities; package eu.eudat.configurations.dynamicgrant.entities;
import eu.eudat.service.reference.external.config.UrlConfiguration; import eu.eudat.service.remotefetcher.config.UrlConfiguration;
import jakarta.xml.bind.annotation.XmlElement; import jakarta.xml.bind.annotation.XmlElement;
import jakarta.xml.bind.annotation.XmlElementWrapper; import jakarta.xml.bind.annotation.XmlElementWrapper;

View File

@ -1,6 +1,6 @@
package eu.eudat.configurations.dynamicproject.entities; package eu.eudat.configurations.dynamicproject.entities;
import eu.eudat.service.reference.external.config.UrlConfiguration; import eu.eudat.service.remotefetcher.config.UrlConfiguration;
import jakarta.xml.bind.annotation.XmlElement; import jakarta.xml.bind.annotation.XmlElement;
import jakarta.xml.bind.annotation.XmlElementWrapper; import jakarta.xml.bind.annotation.XmlElementWrapper;

View File

@ -1,21 +1,16 @@
package eu.eudat.controllers; package eu.eudat.controllers;
import eu.eudat.configurations.dynamicgrant.DynamicGrantConfiguration;
import eu.eudat.configurations.dynamicgrant.entities.Language;
import eu.eudat.logic.managers.CommonsManager; import eu.eudat.logic.managers.CommonsManager;
import eu.eudat.logic.proxy.config.configloaders.ConfigLoader; import eu.eudat.logic.proxy.config.configloaders.ConfigLoader;
import eu.eudat.models.data.externalurl.ExternalSourcesConfiguration; import eu.eudat.models.data.externalurl.ExternalSourcesConfiguration;
import eu.eudat.models.data.helpers.responses.ResponseItem; import eu.eudat.models.data.helpers.responses.ResponseItem;
import eu.eudat.service.reference.external.ExternalUrlConfigProvider; import eu.eudat.service.remotefetcher.ExternalUrlConfigProvider;
import eu.eudat.service.storage.StorageFileService;
import eu.eudat.types.ApiMessageCode; import eu.eudat.types.ApiMessageCode;
import org.springframework.beans.factory.annotation.Autowired; import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.http.HttpStatus; import org.springframework.http.HttpStatus;
import org.springframework.http.ResponseEntity; import org.springframework.http.ResponseEntity;
import org.springframework.web.bind.annotation.*; import org.springframework.web.bind.annotation.*;
import java.util.List;
/** /**
* Created by ikalyvas on 3/28/2018. * Created by ikalyvas on 3/28/2018.
*/ */

View File

@ -3,7 +3,7 @@ package eu.eudat.controllers;
import eu.eudat.logic.managers.PrefillingManager; import eu.eudat.logic.managers.PrefillingManager;
import eu.eudat.models.data.datasetwizard.DatasetWizardModel; import eu.eudat.models.data.datasetwizard.DatasetWizardModel;
import eu.eudat.models.data.helpers.responses.ResponseItem; import eu.eudat.models.data.helpers.responses.ResponseItem;
import eu.eudat.models.data.prefilling.Prefilling; import eu.eudat.commons.types.prefilling.PrefillingEntity;
import eu.eudat.types.ApiMessageCode; import eu.eudat.types.ApiMessageCode;
import org.springframework.beans.factory.annotation.Autowired; import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.http.HttpStatus; import org.springframework.http.HttpStatus;
@ -27,9 +27,9 @@ public class Prefillings {
} }
@RequestMapping(method = RequestMethod.GET, value = {"/prefilling/list"}, produces = "application/json") @RequestMapping(method = RequestMethod.GET, value = {"/prefilling/list"}, produces = "application/json")
public ResponseEntity<ResponseItem<List<Prefilling>>> getPrefillingList(@RequestParam String like) { public ResponseEntity<ResponseItem<List<PrefillingEntity>>> getPrefillingList(@RequestParam String like) {
List<Prefilling> prefillingList = prefillingManager.getPrefillings(like); List<PrefillingEntity> prefillingList = prefillingManager.getPrefillings(like);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<List<Prefilling>>().payload(prefillingList).status(ApiMessageCode.NO_MESSAGE)); return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<List<PrefillingEntity>>().payload(prefillingList).status(ApiMessageCode.NO_MESSAGE));
} }
@RequestMapping(method = RequestMethod.GET, value = {"/prefilling/generate/{id}"}, produces = "application/json") @RequestMapping(method = RequestMethod.GET, value = {"/prefilling/generate/{id}"}, produces = "application/json")

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@ -33,7 +33,6 @@ public class DepositController extends BaseController {
private static final LoggerService logger = new LoggerService(LoggerFactory.getLogger(DepositController.class)); private static final LoggerService logger = new LoggerService(LoggerFactory.getLogger(DepositController.class));
private final AuthorizationService authorizationService;
private final DepositService depositService; private final DepositService depositService;
@ -44,7 +43,6 @@ public class DepositController extends BaseController {
@Autowired @Autowired
public DepositController(ApiContext apiContext, AuthorizationService authorizationService, DepositService depositService, CensorFactory censorFactory, AuditService auditService) { public DepositController(ApiContext apiContext, AuthorizationService authorizationService, DepositService depositService, CensorFactory censorFactory, AuditService auditService) {
super(apiContext); super(apiContext);
this.authorizationService = authorizationService;
this.depositService = depositService; this.depositService = depositService;
this.censorFactory = censorFactory; this.censorFactory = censorFactory;
this.auditService = auditService; this.auditService = auditService;

View File

@ -2,15 +2,8 @@ package eu.eudat.logic.managers;
import eu.eudat.models.data.externalurl.ExternalSourcesConfiguration; import eu.eudat.models.data.externalurl.ExternalSourcesConfiguration;
import eu.eudat.logic.proxy.config.configloaders.ConfigLoader; import eu.eudat.logic.proxy.config.configloaders.ConfigLoader;
import eu.eudat.service.reference.external.ExternalUrlConfigProvider; import eu.eudat.service.remotefetcher.ExternalUrlConfigProvider;
import eu.eudat.service.reference.external.config.ExternalUrls;
import eu.eudat.service.storage.StorageFileService;
import jakarta.xml.bind.JAXBContext;
import jakarta.xml.bind.Unmarshaller;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import java.io.ByteArrayInputStream;
import java.util.stream.Collectors; import java.util.stream.Collectors;
/** /**

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@ -5,17 +5,17 @@ import eu.eudat.commons.types.descriptiontemplate.fielddata.AutoCompleteDataEnti
import eu.eudat.commons.types.xml.XmlBuilder; import eu.eudat.commons.types.xml.XmlBuilder;
import eu.eudat.data.DescriptionTemplateEntity; import eu.eudat.data.DescriptionTemplateEntity;
import eu.eudat.logic.proxy.config.configloaders.ConfigLoader; import eu.eudat.logic.proxy.config.configloaders.ConfigLoader;
import eu.eudat.service.reference.external.config.entities.GeneralUrls; import eu.eudat.service.remotefetcher.config.entities.GeneralUrls;
import eu.eudat.service.reference.external.RemoteFetcher; import eu.eudat.service.remotefetcher.RemoteFetcherService;
import eu.eudat.logic.services.ApiContext; import eu.eudat.logic.services.ApiContext;
import eu.eudat.logic.services.operations.DatabaseRepository; import eu.eudat.logic.services.operations.DatabaseRepository;
import eu.eudat.models.data.externaldataset.ExternalAutocompleteFieldModel; import eu.eudat.models.data.externaldataset.ExternalAutocompleteFieldModel;
import eu.eudat.service.reference.external.config.AuthenticationConfiguration; import eu.eudat.service.remotefetcher.config.AuthenticationConfiguration;
import eu.eudat.service.reference.external.config.DataFieldsUrlConfiguration; import eu.eudat.service.remotefetcher.config.DataFieldsUrlConfiguration;
import eu.eudat.service.reference.external.config.DataUrlConfiguration; import eu.eudat.service.remotefetcher.config.DataUrlConfiguration;
import eu.eudat.service.reference.external.config.UrlConfiguration; import eu.eudat.service.remotefetcher.config.UrlConfiguration;
import eu.eudat.service.reference.external.criteria.ExternalReferenceCriteria; import eu.eudat.service.remotefetcher.criteria.ExternalReferenceCriteria;
import eu.eudat.service.reference.external.criteria.FetchStrategy; import eu.eudat.service.remotefetcher.criteria.FetchStrategy;
import org.slf4j.Logger; import org.slf4j.Logger;
import org.slf4j.LoggerFactory; import org.slf4j.LoggerFactory;
import org.springframework.beans.factory.annotation.Autowired; import org.springframework.beans.factory.annotation.Autowired;
@ -50,13 +50,13 @@ public class DatasetProfileManager {
private final DatabaseRepository databaseRepository; private final DatabaseRepository databaseRepository;
private final ConfigLoader configLoader; private final ConfigLoader configLoader;
private final RemoteFetcher remoteFetcher; private final RemoteFetcherService remoteFetcherService;
@Autowired @Autowired
public DatasetProfileManager(ApiContext apiContext, ConfigLoader configLoader, RemoteFetcher remoteFetcher) { public DatasetProfileManager(ApiContext apiContext, ConfigLoader configLoader, RemoteFetcherService remoteFetcherService) {
this.databaseRepository = apiContext.getOperationsContext().getDatabaseRepository(); this.databaseRepository = apiContext.getOperationsContext().getDatabaseRepository();
this.configLoader = configLoader; this.configLoader = configLoader;
this.remoteFetcher = remoteFetcher; this.remoteFetcherService = remoteFetcherService;
} }
public FieldEntity queryForField(String xml, String fieldId) throws XPathExpressionException { public FieldEntity queryForField(String xml, String fieldId) throws XPathExpressionException {
@ -189,7 +189,7 @@ public class DatasetProfileManager {
urlConfiguration.setAuth(authenticationConfiguration); urlConfiguration.setAuth(authenticationConfiguration);
} }
genericUrls.getUrls().add(urlConfiguration); genericUrls.getUrls().add(urlConfiguration);
List<Map<String, String>> singleResults = this.remoteFetcher.getExternalGeneric(urlCriteria, genericUrls); List<Map<String, String>> singleResults = this.remoteFetcherService.getExternalGeneric(urlCriteria, genericUrls);
if (!singleResults.isEmpty() && !singleResults.get(0).containsKey("source") && !singleData.getAutoCompleteOptions().getSource().isEmpty()) { if (!singleResults.isEmpty() && !singleResults.get(0).containsKey("source") && !singleData.getAutoCompleteOptions().getSource().isEmpty()) {
singleResults.forEach(singleResult -> singleResult.put("source", singleData.getAutoCompleteOptions().getSource())); singleResults.forEach(singleResult -> singleResult.put("source", singleData.getAutoCompleteOptions().getSource()));
} }

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@ -4,19 +4,13 @@ import com.fasterxml.jackson.databind.DeserializationFeature;
import com.fasterxml.jackson.databind.ObjectMapper; import com.fasterxml.jackson.databind.ObjectMapper;
import eu.eudat.data.DescriptionTemplateEntity; import eu.eudat.data.DescriptionTemplateEntity;
import eu.eudat.logic.mapper.prefilling.PrefillingMapper; import eu.eudat.logic.mapper.prefilling.PrefillingMapper;
import eu.eudat.service.reference.external.ExternalUrlConfigProvider; import eu.eudat.service.remotefetcher.ExternalUrlConfigProvider;
import eu.eudat.service.reference.external.RemoteFetcher; import eu.eudat.service.remotefetcher.criteria.ExternalReferenceCriteria;
import eu.eudat.service.reference.external.config.ExternalUrls; import eu.eudat.service.remotefetcher.config.entities.PrefillingConfig;
import eu.eudat.service.reference.external.criteria.ExternalReferenceCriteria; import eu.eudat.service.remotefetcher.config.entities.PrefillingGet;
import eu.eudat.logic.proxy.config.configloaders.ConfigLoader;
import eu.eudat.service.reference.external.config.entities.PrefillingConfig;
import eu.eudat.service.reference.external.config.entities.PrefillingGet;
import eu.eudat.logic.services.ApiContext; import eu.eudat.logic.services.ApiContext;
import eu.eudat.models.data.datasetwizard.DatasetWizardModel; import eu.eudat.models.data.datasetwizard.DatasetWizardModel;
import eu.eudat.models.data.prefilling.Prefilling; import eu.eudat.commons.types.prefilling.PrefillingEntity;
import eu.eudat.service.storage.StorageFileService;
import jakarta.xml.bind.JAXBContext;
import jakarta.xml.bind.Unmarshaller;
import org.slf4j.Logger; import org.slf4j.Logger;
import org.slf4j.LoggerFactory; import org.slf4j.LoggerFactory;
import org.springframework.beans.factory.annotation.Autowired; import org.springframework.beans.factory.annotation.Autowired;
@ -24,7 +18,6 @@ import org.springframework.http.*;
import org.springframework.stereotype.Service; import org.springframework.stereotype.Service;
import org.springframework.web.client.RestTemplate; import org.springframework.web.client.RestTemplate;
import java.io.ByteArrayInputStream;
import java.util.*; import java.util.*;
import java.util.stream.Collectors; import java.util.stream.Collectors;
@ -49,15 +42,15 @@ public class PrefillingManager {
// this.licenseManager = licenseManager; // this.licenseManager = licenseManager;
} }
public List<Prefilling> getPrefillings(String like) { public List<PrefillingEntity> getPrefillings(String like) {
ExternalReferenceCriteria externalReferenceCriteria = new ExternalReferenceCriteria(); ExternalReferenceCriteria externalReferenceCriteria = new ExternalReferenceCriteria();
externalReferenceCriteria.setLike(like); externalReferenceCriteria.setLike(like);
List<Prefilling> prefillings = new ArrayList<>(); List<PrefillingEntity> prefillings = new ArrayList<>();
List<Map<String, String>> map; List<Map<String, String>> map;
Map<String, PrefillingConfig> prefillingConfigs = this.externalUrlConfigProvider.getExternalUrls().getPrefillings(); Map<String, PrefillingConfig> prefillingConfigs = this.externalUrlConfigProvider.getExternalUrls().getPrefillings();
for (PrefillingConfig prefillingConfig: prefillingConfigs.values()) { for (PrefillingConfig prefillingConfig: prefillingConfigs.values()) {
map = apiContext.getOperationsContext().getRemoteFetcher().getExternalGeneric(externalReferenceCriteria, prefillingConfig.getPrefillingSearch()); map = apiContext.getOperationsContext().getRemoteFetcher().getExternalGeneric(externalReferenceCriteria, prefillingConfig.getPrefillingSearch());
prefillings.addAll(map.stream().map(submap -> objectMapper.convertValue(submap, Prefilling.class)).collect(Collectors.toList())); prefillings.addAll(map.stream().map(submap -> objectMapper.convertValue(submap, PrefillingEntity.class)).collect(Collectors.toList()));
if (prefillingConfig.getPrefillingSearch().getUrlConfig().isDataInListing()) { if (prefillingConfig.getPrefillingSearch().getUrlConfig().isDataInListing()) {
List<Map<String, Object>> mapData = apiContext.getOperationsContext().getRemoteFetcher().getExternalGenericWithData(externalReferenceCriteria, prefillingConfig.getPrefillingSearch()); List<Map<String, Object>> mapData = apiContext.getOperationsContext().getRemoteFetcher().getExternalGenericWithData(externalReferenceCriteria, prefillingConfig.getPrefillingSearch());
for (int i = 0; i < mapData.size(); i++) { for (int i = 0; i < mapData.size(); i++) {

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@ -5,26 +5,26 @@ import gr.cite.tools.exception.MyNotFoundException;
import org.springframework.beans.factory.annotation.Autowired; import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.stereotype.Component; import org.springframework.stereotype.Component;
import eu.eudat.service.reference.external.criteria.ExternalReferenceCriteria; import eu.eudat.service.remotefetcher.criteria.ExternalReferenceCriteria;
import eu.eudat.commons.exceptions.HugeResultSetException; import eu.eudat.commons.exceptions.HugeResultSetException;
import eu.eudat.service.reference.external.RemoteFetcher; import eu.eudat.service.remotefetcher.RemoteFetcherService;
@Component @Component
public class ValidationManager { public class ValidationManager {
private RemoteFetcher remoteFetcher; private RemoteFetcherService remoteFetcherService;
private final UserScope userScope; private final UserScope userScope;
@Autowired @Autowired
public ValidationManager(RemoteFetcher remoteFetcher, UserScope userScope) { public ValidationManager(RemoteFetcherService remoteFetcherService, UserScope userScope) {
super(); super();
this.remoteFetcher = remoteFetcher; this.remoteFetcherService = remoteFetcherService;
this.userScope = userScope; this.userScope = userScope;
} }
public Boolean validateIdentifier(String identifier, String type) throws MyNotFoundException, HugeResultSetException { public Boolean validateIdentifier(String identifier, String type) throws MyNotFoundException, HugeResultSetException {
ExternalReferenceCriteria externalReferenceCriteria = new ExternalReferenceCriteria(identifier); ExternalReferenceCriteria externalReferenceCriteria = new ExternalReferenceCriteria(identifier);
Integer count = this.remoteFetcher.countEntries(externalReferenceCriteria, type); Integer count = this.remoteFetcherService.countEntries(externalReferenceCriteria, type);
return this.userScope.isSet() && count > 0; return this.userScope.isSet() && count > 0;
} }

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@ -9,18 +9,16 @@ import eu.eudat.data.DescriptionTemplateEntity;
import eu.eudat.data.TagEntity; import eu.eudat.data.TagEntity;
import eu.eudat.logic.managers.DatasetManager; import eu.eudat.logic.managers.DatasetManager;
import eu.eudat.logic.managers.DatasetProfileManager; import eu.eudat.logic.managers.DatasetProfileManager;
import eu.eudat.service.reference.external.config.entities.DefaultPrefillingMapping; import eu.eudat.service.remotefetcher.config.entities.DefaultPrefillingMapping;
import eu.eudat.service.reference.external.config.entities.PrefillingFixedMapping; import eu.eudat.service.remotefetcher.config.entities.PrefillingFixedMapping;
import eu.eudat.service.reference.external.config.entities.PrefillingGet; import eu.eudat.service.remotefetcher.config.entities.PrefillingGet;
import eu.eudat.service.reference.external.config.entities.PrefillingMapping; import eu.eudat.service.remotefetcher.config.entities.PrefillingMapping;
import eu.eudat.commons.exceptions.HugeResultSetException;
import eu.eudat.logic.utilities.helpers.StreamDistinctBy; import eu.eudat.logic.utilities.helpers.StreamDistinctBy;
import eu.eudat.logic.utilities.json.JsonSearcher; import eu.eudat.logic.utilities.json.JsonSearcher;
import eu.eudat.commons.types.descriptiontemplate.fielddata.AutoCompleteDataEntity; import eu.eudat.commons.types.descriptiontemplate.fielddata.AutoCompleteDataEntity;
import eu.eudat.models.data.datasetprofile.DatasetProfileOverviewModel; import eu.eudat.models.data.datasetprofile.DatasetProfileOverviewModel;
import eu.eudat.models.data.datasetwizard.DatasetWizardModel; import eu.eudat.models.data.datasetwizard.DatasetWizardModel;
import eu.eudat.models.data.externaldataset.ExternalAutocompleteFieldModel; import eu.eudat.models.data.externaldataset.ExternalAutocompleteFieldModel;
import gr.cite.tools.exception.MyNotFoundException;
import org.json.JSONObject; import org.json.JSONObject;
import org.slf4j.Logger; import org.slf4j.Logger;
import org.slf4j.LoggerFactory; import org.slf4j.LoggerFactory;

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@ -1,11 +1,8 @@
package eu.eudat.logic.proxy.config.configloaders; package eu.eudat.logic.proxy.config.configloaders;
import eu.eudat.service.descriptiontemplate.Semantic;
import eu.eudat.models.data.pid.PidLinks; import eu.eudat.models.data.pid.PidLinks;
import eu.eudat.service.reference.external.config.ExternalUrls;
import org.apache.poi.xwpf.usermodel.XWPFDocument; import org.apache.poi.xwpf.usermodel.XWPFDocument;
import java.util.List;
import java.util.Map; import java.util.Map;
public interface ConfigLoader { public interface ConfigLoader {

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@ -3,7 +3,6 @@ package eu.eudat.logic.proxy.config.configloaders;
import com.fasterxml.jackson.databind.DeserializationFeature; import com.fasterxml.jackson.databind.DeserializationFeature;
import com.fasterxml.jackson.databind.ObjectMapper; import com.fasterxml.jackson.databind.ObjectMapper;
import eu.eudat.models.data.pid.PidLinks; import eu.eudat.models.data.pid.PidLinks;
import eu.eudat.service.reference.external.config.ExternalUrls;
import eu.eudat.service.storage.StorageFileService; import eu.eudat.service.storage.StorageFileService;
import org.apache.poi.xwpf.usermodel.XWPFDocument; import org.apache.poi.xwpf.usermodel.XWPFDocument;
import org.slf4j.Logger; import org.slf4j.Logger;
@ -15,8 +14,6 @@ import org.w3c.dom.Node;
import org.w3c.dom.NodeList; import org.w3c.dom.NodeList;
import org.xml.sax.SAXException; import org.xml.sax.SAXException;
import jakarta.xml.bind.JAXBContext;
import jakarta.xml.bind.Unmarshaller;
import javax.xml.parsers.DocumentBuilder; import javax.xml.parsers.DocumentBuilder;
import javax.xml.parsers.DocumentBuilderFactory; import javax.xml.parsers.DocumentBuilderFactory;
import javax.xml.parsers.ParserConfigurationException; import javax.xml.parsers.ParserConfigurationException;

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@ -1,9 +1,9 @@
package eu.eudat.logic.services; package eu.eudat.logic.services;
import eu.eudat.commons.scope.user.UserScope; import eu.eudat.commons.scope.user.UserScope;
import eu.eudat.service.reference.external.criteria.ExternalReferenceCriteria; import eu.eudat.service.remotefetcher.criteria.ExternalReferenceCriteria;
import eu.eudat.commons.exceptions.HugeResultSetException; import eu.eudat.commons.exceptions.HugeResultSetException;
import eu.eudat.service.reference.external.RemoteFetcher; import eu.eudat.service.remotefetcher.RemoteFetcherService;
import gr.cite.tools.exception.MyNotFoundException; import gr.cite.tools.exception.MyNotFoundException;
import org.springframework.beans.factory.annotation.Autowired; import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.stereotype.Service; import org.springframework.stereotype.Service;
@ -11,19 +11,19 @@ import org.springframework.stereotype.Service;
@Service @Service
public class ExternalValidationService { public class ExternalValidationService {
private RemoteFetcher remoteFetcher; private RemoteFetcherService remoteFetcherService;
private final UserScope userScope; private final UserScope userScope;
@Autowired @Autowired
public ExternalValidationService(RemoteFetcher remoteFetcher, UserScope userScope) { public ExternalValidationService(RemoteFetcherService remoteFetcherService, UserScope userScope) {
super(); super();
this.remoteFetcher = remoteFetcher; this.remoteFetcherService = remoteFetcherService;
this.userScope = userScope; this.userScope = userScope;
} }
public Boolean validateIdentifier(String identifier, String type) throws MyNotFoundException, HugeResultSetException { public Boolean validateIdentifier(String identifier, String type) throws MyNotFoundException, HugeResultSetException {
ExternalReferenceCriteria externalReferenceCriteria = new ExternalReferenceCriteria(identifier); ExternalReferenceCriteria externalReferenceCriteria = new ExternalReferenceCriteria(identifier);
Integer count = this.remoteFetcher.countEntries(externalReferenceCriteria, type); Integer count = this.remoteFetcherService.countEntries(externalReferenceCriteria, type);
return userScope.isSet() && count > 0; return userScope.isSet() && count > 0;
} }

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@ -1,7 +1,7 @@
package eu.eudat.logic.services.operations; package eu.eudat.logic.services.operations;
import eu.eudat.logic.builders.BuilderFactory; import eu.eudat.logic.builders.BuilderFactory;
import eu.eudat.service.reference.external.RemoteFetcher; import eu.eudat.service.remotefetcher.RemoteFetcherService;
import org.springframework.context.ApplicationContext; import org.springframework.context.ApplicationContext;
/** /**
@ -15,7 +15,7 @@ public interface OperationsContext {
BuilderFactory getBuilderFactory(); BuilderFactory getBuilderFactory();
RemoteFetcher getRemoteFetcher(); RemoteFetcherService getRemoteFetcher();
// FileStorageService getFileStorageService(); // FileStorageService getFileStorageService();

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@ -1,7 +1,7 @@
package eu.eudat.logic.services.operations; package eu.eudat.logic.services.operations;
import eu.eudat.logic.builders.BuilderFactory; import eu.eudat.logic.builders.BuilderFactory;
import eu.eudat.service.reference.external.RemoteFetcher; import eu.eudat.service.remotefetcher.RemoteFetcherService;
import org.springframework.beans.factory.annotation.Autowired; import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.context.ApplicationContext; import org.springframework.context.ApplicationContext;
import org.springframework.stereotype.Service; import org.springframework.stereotype.Service;
@ -14,17 +14,17 @@ public class OperationsContextImpl implements OperationsContext {
private final DatabaseRepository databaseRepository; private final DatabaseRepository databaseRepository;
private final ApplicationContext applicationContext; private final ApplicationContext applicationContext;
private final RemoteFetcher remoteFetcher; private final RemoteFetcherService remoteFetcherService;
private final BuilderFactory builderFactory; private final BuilderFactory builderFactory;
// private final FileStorageService fileStorageService; // private final FileStorageService fileStorageService;
// private final ElasticRepository elasticRepository; // private final ElasticRepository elasticRepository;
@Autowired @Autowired
public OperationsContextImpl(DatabaseRepository databaseRepository, ApplicationContext applicationContext, RemoteFetcher remoteFetcher public OperationsContextImpl(DatabaseRepository databaseRepository, ApplicationContext applicationContext, RemoteFetcherService remoteFetcherService
, BuilderFactory builderFactory/*FileStorageService fileStorageService, ElasticRepository elasticRepository*/) { , BuilderFactory builderFactory/*FileStorageService fileStorageService, ElasticRepository elasticRepository*/) {
this.databaseRepository = databaseRepository; this.databaseRepository = databaseRepository;
this.applicationContext = applicationContext; this.applicationContext = applicationContext;
this.remoteFetcher = remoteFetcher; this.remoteFetcherService = remoteFetcherService;
this.builderFactory = builderFactory; this.builderFactory = builderFactory;
// this.fileStorageService = fileStorageService; // this.fileStorageService = fileStorageService;
// this.elasticRepository = elasticRepository; // this.elasticRepository = elasticRepository;
@ -41,8 +41,8 @@ public class OperationsContextImpl implements OperationsContext {
} }
@Override @Override
public RemoteFetcher getRemoteFetcher() { public RemoteFetcherService getRemoteFetcher() {
return remoteFetcher; return remoteFetcherService;
} }
@Override @Override

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@ -669,6 +669,17 @@ permissions:
clients: [ ] clients: [ ]
allowAnonymous: false allowAnonymous: false
allowAuthenticated: false allowAuthenticated: false
# Prefilling
BrowsePrefilling:
roles:
- Admin
- DescriptionTemplateEditor
- Manager
- User
claims: [ ]
clients: [ ]
allowAnonymous: false
allowAuthenticated: false
# Lock Permissions # Lock Permissions
BrowseLock: BrowseLock: