reference changes
This commit is contained in:
parent
d50613f416
commit
61560ec8ad
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@ -184,7 +184,7 @@ public class ReferenceServiceImpl implements ReferenceService {
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List<ReferenceEntity> referenceEntities = new ArrayList<>();
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List<ReferenceEntity> referenceEntities = new ArrayList<>();
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for (Map<String, String> result : remoteRepos.getResults()){
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for (Map<String, String> result : remoteRepos.getResults()){
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if (result == null || result.isEmpty()) continue;;
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if (result == null || result.isEmpty()) continue;;
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ReferenceEntity referenceEntity = buildReferenceEntityFromExternalData(result, data, remoteRepos);
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ReferenceEntity referenceEntity = buildReferenceEntityFromExternalData(result, data);
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referenceEntities.add(referenceEntity);
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referenceEntities.add(referenceEntity);
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}
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}
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externalModels = this.builderFactory.builder(ReferenceBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(lookup.getProject(), referenceEntities);
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externalModels = this.builderFactory.builder(ReferenceBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(lookup.getProject(), referenceEntities);
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@ -196,7 +196,7 @@ public class ReferenceServiceImpl implements ReferenceService {
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if (models.stream().noneMatch(x-> x.getReference() != null && x.getSource() != null && x.getReference().equals(externalReference.getReference()) && x.getSource().equals(externalReference.getSource()))) models.add(externalReference);
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if (models.stream().noneMatch(x-> x.getReference() != null && x.getSource() != null && x.getReference().equals(externalReference.getReference()) && x.getSource().equals(externalReference.getSource()))) models.add(externalReference);
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}
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}
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if (!this.conventionService.isNullOrEmpty(like)) { models = models.stream().filter(x -> x.getLabel().toLowerCase().contains(like.toLowerCase())).collect(Collectors.toList()); }
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if (!this.conventionService.isNullOrEmpty(like)) { models = models.stream().filter(x -> x.getLabel().toLowerCase(Locale.ROOT).toLowerCase().contains(like.toLowerCase(Locale.ROOT))).collect(Collectors.toList()); }
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models = models.stream().sorted(Comparator.comparing(Reference::getLabel, Comparator.nullsFirst(Comparator.naturalOrder()))).collect(Collectors.toList());
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models = models.stream().sorted(Comparator.comparing(Reference::getLabel, Comparator.nullsFirst(Comparator.naturalOrder()))).collect(Collectors.toList());
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if (lookup.getPage() != null && !lookup.getPage().isEmpty()){
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if (lookup.getPage() != null && !lookup.getPage().isEmpty()){
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@ -207,7 +207,7 @@ public class ReferenceServiceImpl implements ReferenceService {
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}
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}
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@NotNull
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@NotNull
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private ReferenceEntity buildReferenceEntityFromExternalData(Map<String, String> result, ReferenceTypeEntity data, ExternalDataResult remoteRepos) {
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private ReferenceEntity buildReferenceEntityFromExternalData(Map<String, String> result, ReferenceTypeEntity data) {
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ReferenceEntity referenceEntity = new ReferenceEntity();
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ReferenceEntity referenceEntity = new ReferenceEntity();
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referenceEntity.setTypeId(data.getId());
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referenceEntity.setTypeId(data.getId());
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referenceEntity.setIsActive(IsActive.Active);
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referenceEntity.setIsActive(IsActive.Active);
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@ -220,23 +220,26 @@ public class ReferenceServiceImpl implements ReferenceService {
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DefinitionEntity definitionEntity = new DefinitionEntity();
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DefinitionEntity definitionEntity = new DefinitionEntity();
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definitionEntity.setFields(new ArrayList<>());
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definitionEntity.setFields(new ArrayList<>());
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for (Map.Entry<String, String> resultValue : result.entrySet()){
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for (Map.Entry<String, String> resultValue : result.entrySet()){
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if (resultValue.getKey().equals(ReferenceEntity.KnownFields.ReferenceId)
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|| resultValue.getKey().equals(ReferenceEntity.KnownFields.Abbreviation)
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|| resultValue.getKey().equals(ReferenceEntity.KnownFields.Description)
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|| resultValue.getKey().equals(ReferenceEntity.KnownFields.Label)
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|| resultValue.getKey().equals(ReferenceEntity.KnownFields.SourceLabel)) continue;
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FieldEntity fieldEntity = new FieldEntity();
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FieldEntity fieldEntity = new FieldEntity();
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fieldEntity.setCode(resultValue.getKey());
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fieldEntity.setCode(resultValue.getKey());
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fieldEntity.setValue(resultValue.getValue());
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fieldEntity.setValue(resultValue.getValue());
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fieldEntity.setDataType(ReferenceFieldDataType.Text);
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fieldEntity.setDataType(ReferenceFieldDataType.Text);
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definitionEntity.getFields().add(fieldEntity);
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definitionEntity.getFields().add(fieldEntity);
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}
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}
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referenceEntity.setDefinition(this.xmlHandlingService.toXmlSafe(definitionEntity));
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if (!definitionEntity.getFields().isEmpty()) referenceEntity.setDefinition(this.xmlHandlingService.toXmlSafe(definitionEntity));
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return referenceEntity;
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return referenceEntity;
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}
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}
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private List<Reference> fetchReferenceFromDb(ReferenceSearchLookup lookup){
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private List<Reference> fetchReferenceFromDb(ReferenceSearchLookup lookup){
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ReferenceQuery query = lookup.enrich(this.queryFactory).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).sourceTypes(ReferenceSourceType.Internal).typeIds(lookup.getTypeId());
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ReferenceQuery query = lookup.enrich(this.queryFactory).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).sourceTypes(ReferenceSourceType.Internal).typeIds(lookup.getTypeId());
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//TODO: Stratis update db for references.
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//List<ReferenceEntity> data = query.collectAs(lookup.getProject());
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List<ReferenceEntity> data = query.collectAs(lookup.getProject());
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//return this.builderFactory.builder(ReferenceBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(lookup.getProject(), data);
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return this.builderFactory.builder(ReferenceBuilder.class).authorize(AuthorizationFlags.OwnerOrDmpAssociatedOrPermissionOrPublic).build(lookup.getProject(), data);
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return new ArrayList<>();
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}
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}
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private ExternalDataResult getReferenceData(ReferenceTypeEntity referenceType, ExternalReferenceCriteria externalReferenceCriteria, String key) {
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private ExternalDataResult getReferenceData(ReferenceTypeEntity referenceType, ExternalReferenceCriteria externalReferenceCriteria, String key) {
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@ -250,257 +253,5 @@ public class ReferenceServiceImpl implements ReferenceService {
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return results;
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return results;
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}
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}
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// private List<Map<String, String>> getAll ( List<ReferenceTypeSourceBaseConfigurationEntity> sources, ReferenceDefinitionSearchLookup lookup){
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// List<Map<String, String>> results = new LinkedList<>();
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//
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// if (sources == null || sources.isEmpty()) {
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// return results;
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// }
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//
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// sources.sort(Comparator.comparing(ReferenceTypeSourceBaseConfigurationEntity::getOrdinal));
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//
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// List<ReferenceTypeSourceExternalApiConfigurationEntity> apiSources = sources.stream().filter(x-> ReferenceTypeSourceType.API.equals(x.getType())).map(x-> (ReferenceTypeSourceExternalApiConfigurationEntity)x).toList();
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// apiSources.forEach(source -> {
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// try {
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// String auth = null;
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// if (source.getAuth()!= null) {
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// //auth = this.getAuthentication(source.getAuth());
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// }
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// results.addAll(getAllApiResultsFromUrl(source.getUrl(), null, source.getResults(), source.getPaginationPath(), lookup, source.getLabel(), source.getKey(), source.getContentType(), source.getFirstPage(), source.getRequestBody(), source.getHttpMethod(), source.getFilterType(), source.getQueries(), auth));
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// } catch (Exception e) {
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// logger.error(e.getLocalizedMessage(), e);
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// }
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// });
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// List<ReferenceTypeSourceStaticOptionConfigurationEntity> staticSources = sources.stream().filter(x-> ReferenceTypeSourceType.STATIC.equals(x.getType())).map(x-> (ReferenceTypeSourceStaticOptionConfigurationEntity)x).toList();
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// staticSources.forEach(source -> {
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// Map<String, String> map = new HashMap<>();
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// source.getOptions().forEach(option -> {
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// map.put(option.getCode(), option.getValue());
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// map.put("tag", source.getLabel());
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// map.put("key", source.getKey());
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// });
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// results.add(map);
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// });
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//
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// return results;
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// }
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// private String getAuthentication(AuthenticationConfigurationEntity authenticationConfiguration) {
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// HttpMethod method = HttpMethod.valueOf(authenticationConfiguration.getAuthMethod().name());
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// Map<String, Object> response = this.client.method(method).uri(authenticationConfiguration.getAuthUrl())
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// .contentType(MediaType.APPLICATION_JSON)
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// .bodyValue(this.parseBodyString(authenticationConfiguration.getAuthRequestBody()))
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// .exchangeToMono(mono -> mono.bodyToMono(new ParameterizedTypeReference<Map<String, Object>>() {
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// })).block();
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//
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//
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//
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// return authenticationConfiguration.getType() + " " + response.get(authenticationConfiguration.getAuthTokenPath());
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// }
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// private String parseBodyString(String bodyString) {
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// String finalBodyString = bodyString;
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// if (bodyString.contains("{env:")) {
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// int index = bodyString.indexOf("{env: ");
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// while (index >= 0) {
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// int endIndex = bodyString.indexOf("}", index + 6);
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// String envName = bodyString.substring(index + 6, endIndex);
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// finalBodyString = finalBodyString.replace("{env: " + envName + "}", System.getenv(envName));
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// index = bodyString.indexOf("{env: ", index + 6);
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// }
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// }
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// return finalBodyString;
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// }
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// private List<Map<String, String>> getAllApiResultsFromUrl(String urlPath, FetchStrategy fetchStrategy, final ResultsConfigurationEntity resultsEntity, final String jsonPaginationPath, ReferenceDefinitionSearchLookup lookup, String label, String key, String contentType, String firstPage, String requestBody, ReferenceTypeExternalApiHTTPMethodType requestType, String filterType, List<QueryConfigEntity> queries, String auth) throws Exception {
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// Set<Integer> pages = new HashSet<>();
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//
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// String replacedUrlPath = replaceLookupFields(urlPath, lookup, firstPage, queries);
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// String replacedUrlBody = replaceLookupFields(requestBody, lookup, firstPage, queries);
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//
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// ExternalDataResult externalRefernceResult = getResultsFromUrl(replacedUrlPath, resultsEntity, jsonPaginationPath, contentType, replacedUrlBody, requestType, auth);
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// if(externalRefernceResult != null) {
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// if (filterType != null && filterType.equals("local") && (lookup.getLike() != null && !lookup.getLike().isEmpty())) {
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// externalRefernceResult.setResults(externalRefernceResult.getResults().stream()
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// .filter(r -> r.get("name").toLowerCase().contains(lookup.getLike().toLowerCase()))
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// .collect(Collectors.toList()));
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// }
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// if (fetchStrategy == FetchStrategy.FIRST)
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// return externalRefernceResult.getResults().stream().peek(x -> x.put("tag", label)).peek(x -> x.put("key", key)).collect(Collectors.toList());
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//
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// //Long maxResults = configLoader.getExternalUrls().getMaxresults();
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// Long maxResults = Long.valueOf(1000);
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// if (externalRefernceResult.getResults().size() > maxResults)
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// throw new HugeResultSetException("The submitted search query " + lookup.getLike() + " is about to return " + externalRefernceResult.getResults().size() + " results... Please submit a more detailed search query");
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//
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// Optional<ExternalDataResult> optionalResults = pages.parallelStream()
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// .map(page -> getResultsFromUrl(urlPath + "&page=" + page, resultsEntity, jsonPaginationPath, contentType, replacedUrlBody, requestType, auth))
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// .filter(Objects::nonNull)
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// .reduce((result1, result2) -> {
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// result1.getResults().addAll(result2.getResults());
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// return result1;
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// });
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// ExternalDataResult remainingExternalDataResult = optionalResults.orElseGet(ExternalDataResult::new);
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// remainingExternalDataResult.getResults().addAll(externalRefernceResult.getResults());
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//
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// return remainingExternalDataResult.getResults().stream().peek(x -> x.put("tag", label)).peek(x -> x.put("key", key)).collect(Collectors.toList());
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// }
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// else {
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// return new LinkedList<>();
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// }
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// }
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// private String replaceLookupFields(String urlPath, ReferenceDefinitionSearchLookup lookup, String firstPage, List<QueryConfigEntity> queries){
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// String completedPath = urlPath;
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//
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// if (urlPath.contains("openaire") || urlPath.contains("orcid") ){
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// if (lookup.getLike() != null) {
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// completedPath = completedPath.replace("{like}", lookup.getLike());
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// } else {
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// completedPath = completedPath.replace("{like}", "*");
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// }
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// }
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//
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// if (urlPath.contains("{like}")){
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// if (lookup.getLike() != null) {
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// completedPath = completedPath.replace("{like}", lookup.getLike());
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// } else {
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// completedPath = completedPath.replace("{like}", "");
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// }
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// }
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//
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// if (urlPath.contains("{page}")) {
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// if (lookup.getPage() != null && lookup.getPage().getOffset() > 0) {
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// completedPath = completedPath.replace("{page}", String.valueOf(lookup.getPage().getOffset()));
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// } else if (firstPage != null) {
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// completedPath = completedPath.replace("{page}", firstPage);
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// } else {
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// completedPath = completedPath.replace("{page}", "1");
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// }
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// }
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//
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// if (urlPath.contains("{pageSize}")){
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// if (lookup.getPage() != null && lookup.getPage().getSize() > 0) {
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// completedPath = completedPath.replace("{pageSize}", String.valueOf(lookup.getPage().getSize()));
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// } else {
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// completedPath = completedPath.replace("{pageSize}", "100");
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// }
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// }
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//
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//
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// return completedPath;
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// }
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// protected ExternalDataResult getResultsFromUrl(String urlString, ResultsConfigurationEntity resultsEntity, String jsonPaginationPath, String contentType, String requestBody, ReferenceTypeExternalApiHTTPMethodType httpMethod, String auth) {
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//
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// try {
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// ResponseEntity<String> response;
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// JsonNode jsonBody = new ObjectMapper().readTree(requestBody);
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//
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// response = this.client.method(HttpMethod.valueOf(httpMethod.name())).uri(urlString).headers(httpHeaders -> {
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// if (contentType != null && !contentType.isEmpty()) {
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// httpHeaders.setAccept(Collections.singletonList(MediaType.valueOf(contentType)));
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// httpHeaders.setContentType(MediaType.valueOf(contentType));
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// }
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// if (auth != null) {
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// httpHeaders.set("Authorization", auth);
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// }
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// }).bodyValue(jsonBody).retrieve().toEntity(String.class).block();
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// if (response.getStatusCode() == HttpStatus.OK) { // success
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// ExternalDataResult externalDataResult = new ExternalDataResult();
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// if (response.getHeaders().get("Content-Type").get(0).contains("json")) {
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// DocumentContext jsonContext = JsonPath.parse(response.getBody());
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// externalDataResult = this.getFromJson(jsonContext, resultsEntity);
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// }
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//
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// return externalDataResult;
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// }
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// } catch (Exception exception) {
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// logger.error(exception.getMessage(), exception);
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// }
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//
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// return null;
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// }
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// public static ExternalDataResult getFromJson(DocumentContext jsonContext, ResultsConfigurationEntity resultsEntity) {
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// return new ExternalDataResult(parseData(jsonContext, resultsEntity));
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// }
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// private static List<Map<String, String>> parseData (DocumentContext jsonContext, ResultsConfigurationEntity resultsEntity) {
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// List <Map<String, String>> rawData = jsonContext.read(resultsEntity.getResultsArrayPath());
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// List<Map<String, String>> parsedData = new ArrayList<>();
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//
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// for (Map<String, String> stringObjectMap: rawData){
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// Map<String, String> map = new HashMap<>();
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// for(ResultFieldsMappingConfigurationEntity field: resultsEntity.getFieldsMapping()){
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// String pathValue = field.getResponsePath();
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// if (!pathValue.contains(".")){
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// if (stringObjectMap.containsKey(pathValue)) {
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// //map.put(field.getCode(), stringObjectMap.get(pathValue));
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// map.put(field.getCode(), normalizeValue(stringObjectMap.get(pathValue)));
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// }
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// }else {
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// if (stringObjectMap.containsKey(pathValue.split("\\.")[0])){
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// String value = null;
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// Object fieldObj = stringObjectMap.get(pathValue.split("\\.")[0]);
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// if (fieldObj != null){
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// if (fieldObj instanceof Map){
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// Object o = ((Map<String, Object>) fieldObj).get(pathValue.split("\\.")[1]);
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// if(o instanceof String){
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// value = (String)o;
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// }
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// else if(o instanceof Integer){
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// value = String.valueOf(o);
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// }
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// } else if (fieldObj instanceof List) {
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// Object o = ((List<Map<String,?>>) fieldObj).get(0).get(pathValue.split("\\.")[1]);
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// if(o instanceof String){
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// value = (String)o;
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// }
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// else if(o instanceof Integer){
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// value = String.valueOf(o);
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// }
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// }
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// }
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// if (value != null){
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// map.put(field.getCode(), value);
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// }
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// }
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// }
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// }
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// parsedData.add(map);
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// }
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// return parsedData;
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// }
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//
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//
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// private static String normalizeValue(Object value) {
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// if (value instanceof JSONArray) {
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// JSONArray jarr = (JSONArray) value;
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// if (jarr.get(0) instanceof String) {
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// return jarr.get(0).toString();
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// } else {
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// for (Object o : jarr) {
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// if ((o instanceof Map) && ((Map) o).containsKey("content")) {
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// try {
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// return ((Map<String, String>) o).get("content");
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// }
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// catch (ClassCastException e){
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// if(((Map<?, ?>) o).get("content") instanceof Integer) {
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// return String.valueOf(((Map<?, ?>) o).get("content"));
|
|
||||||
// }
|
|
||||||
// return null;
|
|
||||||
// }
|
|
||||||
// }
|
|
||||||
// }
|
|
||||||
// }
|
|
||||||
// } else if (value instanceof Map) {
|
|
||||||
// String key = ((Map<String, String>)value).containsKey("$") ? "$" : "content";
|
|
||||||
// return ((Map<String, String>)value).get(key);
|
|
||||||
// }
|
|
||||||
// return value != null ? value.toString() : null;
|
|
||||||
// }
|
|
||||||
|
|
||||||
}
|
}
|
||||||
|
|
|
||||||
|
|
@ -24,7 +24,6 @@ spring:
|
||||||
optional:classpath:config/deposit.yml[.yml], optional:classpath:config/deposit-${spring.profiles.active}.yml[.yml], optional:file:../config/deposit-${spring.profiles.active}.yml[.yml],
|
optional:classpath:config/deposit.yml[.yml], optional:classpath:config/deposit-${spring.profiles.active}.yml[.yml], optional:file:../config/deposit-${spring.profiles.active}.yml[.yml],
|
||||||
optional:classpath:config/errors.yml[.yml], optional:classpath:config/errors-${spring.profiles.active}.yml[.yml], optional:file:../config/errors-${spring.profiles.active}.yml[.yml],
|
optional:classpath:config/errors.yml[.yml], optional:classpath:config/errors-${spring.profiles.active}.yml[.yml], optional:file:../config/errors-${spring.profiles.active}.yml[.yml],
|
||||||
optional:classpath:config/storage.yml[.yml], optional:classpath:config/storage-${spring.profiles.active}.yml[.yml], optional:file:../config/storage-${spring.profiles.active}.yml[.yml],
|
optional:classpath:config/storage.yml[.yml], optional:classpath:config/storage-${spring.profiles.active}.yml[.yml], optional:file:../config/storage-${spring.profiles.active}.yml[.yml],
|
||||||
optional:classpath:config/reference-type.yml[.yml], optional:classpath:config/reference-type-${spring.profiles.active}.yml[.yml], optional:file:../config/reference-type-${spring.profiles.active}.yml[.yml],
|
|
||||||
optional:classpath:config/tenant.yml[.yml], optional:classpath:config/tenant-${spring.profiles.active}.yml[.yml], optional:file:../config/tenant-${spring.profiles.active}.yml[.yml],
|
optional:classpath:config/tenant.yml[.yml], optional:classpath:config/tenant-${spring.profiles.active}.yml[.yml], optional:file:../config/tenant-${spring.profiles.active}.yml[.yml],
|
||||||
optional:classpath:config/queue.yml[.yml], optional:classpath:config/queue-${spring.profiles.active}.yml[.yml], optional:file:../config/queue-${spring.profiles.active}.yml[.yml],
|
optional:classpath:config/queue.yml[.yml], optional:classpath:config/queue-${spring.profiles.active}.yml[.yml], optional:file:../config/queue-${spring.profiles.active}.yml[.yml],
|
||||||
optional:classpath:config/notification.yml[.yml], optional:classpath:config/notification-${spring.profiles.active}.yml[.yml], optional:file:../config/notification-${spring.profiles.active}.yml[.yml],
|
optional:classpath:config/notification.yml[.yml], optional:classpath:config/notification-${spring.profiles.active}.yml[.yml], optional:file:../config/notification-${spring.profiles.active}.yml[.yml],
|
||||||
|
|
|
||||||
Loading…
Reference in New Issue